Start: 2025-01-27 16:01:18 GMT [testing] Package: python3-slow5 Source: libslow5lib (0.7.0+dfsg-3) Version: 0.7.0+dfsg-3+b2 Installed-Size: 8239 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libslow5-0t64 (= 0.7.0+dfsg-3+b2), libc6 (>= 2.34), libstreamvbyte0 (>= 0.4.1), zlib1g (>= 1:1.1.4), python3-numpy (>= 1:1.25.0), python3-numpy-abi9, python3 (<< 3.14), python3 (>= 3.12~) Description: Python3 modul for reading & writing SLOW5 files Homepage: https://github.com/hasindu2008/slow5lib Description-md5: a7ebb83be36b43718b62e6c7b31bd827 Section: python Priority: optional Filename: pool/main/libs/libslow5lib/python3-slow5_0.7.0+dfsg-3+b2_amd64.deb Size: 564028 MD5sum: 68cb0f572b1660300b821aefb0e905fb SHA256: e38c76b1fef04bb5e0a6955584216831c3eff2c627c9efaa6cbcc4ac9480d105 [sid] Package: python3-slow5 Source: libslow5lib (0.7.0+dfsg-3) Version: 0.7.0+dfsg-3+b3 Installed-Size: 8239 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libslow5-0t64 (= 0.7.0+dfsg-3+b3), libc6 (>= 2.34), libstreamvbyte0 (>= 0.4.1), zlib1g (>= 1:1.1.4), python3-numpy2-abi0 | python3-numpy-abi9, python3 (<< 3.14), python3 (>= 3.12~) Description: Python3 modul for reading & writing SLOW5 files Homepage: https://github.com/hasindu2008/slow5lib Description-md5: a7ebb83be36b43718b62e6c7b31bd827 Section: python Priority: optional Filename: pool/main/libs/libslow5lib/python3-slow5_0.7.0+dfsg-3+b3_amd64.deb Size: 562892 MD5sum: c80f6d676e8f38ea2aa8f74b250d6851 SHA256: 1e95f9f2a9d1d4d59aaff8d439477f48ca6c7ed2566e54541c6ee2fa2d010a67 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-slow5=0.7.0+dfsg-3+b3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-slow5=0.7.0+dfsg-3+b3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpedkp2zwj 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpedkp2zwj 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpedkp2zwj/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', 'update'] 0m1.5s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [175 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9404 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6311 kB] Fetched 15.9 MB in 1s (20.4 MB/s) Reading package lists... 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', 'update'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', '-yf', 'dist-upgrade'] 0m1.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', '-yf', 'dist-upgrade'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.9s DUMP: 888f488713dee2c2396f6b7dfc09f023 - 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.9s INFO: Running scripts post_setup 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_setup_dummy_users'] 0m2.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_setup_dummy_users'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_setup_forbid_home'] 0m2.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_setup_forbid_home'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_setup_minimize'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_setup_minimize'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_setup_zz_backports'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_setup_zz_backports'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.3s DUMP: install ok installed apt apt 2.9.23 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.4-1 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-11 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-12 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.23 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libblkid1:amd64 libblkid1 2.40.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-5 install ok installed libc6:amd64 libc6 2.40-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-12 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-4 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-1 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.0-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-12 install ok installed libsystemd0:amd64 libsystemd0 257.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 257.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-1 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.4-1 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.0-2 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl-base perl-base 5.40.0-8 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-5 install ok installed sysvinit-utils sysvinit-utils 3.13-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2024b-6 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m2.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m2.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m2.6s INFO: Running scripts is_testable 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/is_testable_uninstallable'] 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/is_testable_uninstallable'] 0m2.6s INFO: Running scripts pre_test 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_test_exceptions'] 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_test_exceptions'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_test_root_password'] 0m2.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_test_root_password'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'show', '--no-all-versions', 'python3-slow5'] 0m2.7s DUMP: Package: python3-slow5 Source: libslow5lib (0.7.0+dfsg-3) Version: 0.7.0+dfsg-3+b2 Installed-Size: 8239 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libslow5-0t64 (= 0.7.0+dfsg-3+b2), libc6 (>= 2.34), libstreamvbyte0 (>= 0.4.1), zlib1g (>= 1:1.1.4), python3-numpy (>= 1:1.25.0), python3-numpy-abi9, python3 (<< 3.14), python3 (>= 3.12~) Description-en: Python3 modul for reading & writing SLOW5 files Slow5lib is a software library for reading & writing SLOW5 files. Slow5lib is designed to facilitate use of data in SLOW5 format by third- party software packages. Existing packages that read/write data in FAST5 format can be easily modified to support SLOW5. . SLOW5 is a new file format for storing signal data from Oxford Nanopore Technologies (ONT) devices. SLOW5 was developed to overcome inherent limitations in the standard FAST5 signal data format that prevent efficient, scalable analysis and cause many headaches for developers. SLOW5 can be encoded in human-readable ASCII format, or a more compact and efficient binary format (BLOW5) - this is analogous to the seminal SAM/BAM format for storing DNA sequence alignments. The BLOW5 binary format supports *zlib* (DEFLATE) compression, or other compression methods, thereby minimising the data storage footprint while still permitting efficient parallel access. Detailed benchmarking experiments have shown that SLOW5 format is an order of magnitude faster and significantly smaller than FAST5. . This is the Python3 module. Description-md5: a7ebb83be36b43718b62e6c7b31bd827 Homepage: https://github.com/hasindu2008/slow5lib Section: python Priority: optional Filename: pool/main/libs/libslow5lib/python3-slow5_0.7.0+dfsg-3+b2_amd64.deb Size: 564028 MD5sum: 68cb0f572b1660300b821aefb0e905fb SHA256: e38c76b1fef04bb5e0a6955584216831c3eff2c627c9efaa6cbcc4ac9480d105 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'show', '--no-all-versions', 'python3-slow5'] 0m2.7s INFO: apt-cache knows about the following packages: python3-slow5 0m2.7s INFO: Running scripts pre_install 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_database-server'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_database-server'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_exceptions'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_exceptions'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_extras'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_extras'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'policy'] 0m2.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'policy'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'policy', 'python3-slow5'] 0m2.7s DUMP: python3-slow5: Installed: (none) Candidate: 0.7.0+dfsg-3+b2 Version table: 0.7.0+dfsg-3+b2 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'policy', 'python3-slow5'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', '-y', 'install', 'python3-slow5'] 0m6.2s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libblas3 libexpat1 libffi8 libgfortran5 liblapack3 libncursesw6 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libslow5-0t64 libsqlite3-0 libstreamvbyte0 media-types netbase python3 python3-minimal python3-numpy python3.13 python3.13-minimal readline-common Suggested packages: python3-doc python3-tk python3-venv gcc gfortran python-numpy-doc python3-dev python3-pytest python3.13-venv python3.13-doc binutils binfmt-support readline-doc Recommended packages: libgpm2 ca-certificates The following NEW packages will be installed: libblas3 libexpat1 libffi8 libgfortran5 liblapack3 libncursesw6 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libslow5-0t64 libsqlite3-0 libstreamvbyte0 media-types netbase python3 python3-minimal python3-numpy python3-slow5 python3.13 python3.13-minimal readline-common 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. Need to get 16.1 MB of archives. After this operation, 84.6 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5-2+b1 [136 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.1-3 [740 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get:15 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-12 [836 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libslow5-0t64 amd64 0.7.0+dfsg-3+b2 [66.7 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libstreamvbyte0 amd64 0.4.1-4+b1 [5868 B] Get:21 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 python3-slow5 amd64 0.7.0+dfsg-3+b2 [564 kB] Fetched 16.1 MB in 0s (69.5 MB/s) Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5033 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.1-3_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.1-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.1-3_amd64.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Setting up libpython3.13-minimal:amd64 (3.13.1-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.1-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5367 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.13.1-2_amd64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../03-libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.5-2+b1_amd64.deb ... Unpacking libncursesw6:amd64 (6.5-2+b1) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../06-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../08-libpython3.13-stdlib_3.13.1-3_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.1-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../09-python3.13_3.13.1-3_amd64.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../10-libpython3-stdlib_3.13.1-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5879 files and directories currently installed.) Preparing to unpack .../0-python3_3.13.1-2_amd64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../1-libblas3_3.12.0-4_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-4) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../2-libgfortran5_14.2.0-12_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-12) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../3-liblapack3_3.12.0-4_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-4) ... Selecting previously unselected package libslow5-0t64:amd64. Preparing to unpack .../4-libslow5-0t64_0.7.0+dfsg-3+b2_amd64.deb ... Unpacking libslow5-0t64:amd64 (0.7.0+dfsg-3+b2) ... Selecting previously unselected package libstreamvbyte0:amd64. Preparing to unpack .../5-libstreamvbyte0_0.4.1-4+b1_amd64.deb ... Unpacking libstreamvbyte0:amd64 (0.4.1-4+b1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../6-python3-numpy_1%3a1.26.4+ds-13_amd64.deb ... Unpacking python3-numpy (1:1.26.4+ds-13) ... Selecting previously unselected package python3-slow5. Preparing to unpack .../7-python3-slow5_0.7.0+dfsg-3+b2_amd64.deb ... Unpacking python3-slow5 (0.7.0+dfsg-3+b2) ... Setting up media-types (10.1.0) ... Setting up libstreamvbyte0:amd64 (0.4.1-4+b1) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libslow5-0t64:amd64 (0.7.0+dfsg-3+b2) ... Setting up libncursesw6:amd64 (6.5-2+b1) ... Setting up libgfortran5:amd64 (14.2.0-12) ... Setting up libffi8:amd64 (3.4.6-1) ... Setting up netbase (6.4) ... Setting up readline-common (8.2-6) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libpython3.13-stdlib:amd64 (3.13.1-3) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up python3.13 (3.13.1-3) ... Setting up python3 (3.13.1-2) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-slow5 (0.7.0+dfsg-3+b2) ... Processing triggers for libc-bin (2.40-5) ... 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', '-y', 'install', 'python3-slow5'] 0m6.2s INFO: Running scripts post_install 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_install_exceptions'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_install_exceptions'] 0m6.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m6.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m6.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpedkp2zwj to sid 0m6.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m6.5s INFO: Running scripts pre_distupgrade 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', 'update'] 0m8.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7334 kB] Fetched 17.6 MB in 1s (12.3 MB/s) Reading package lists... 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', 'update'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', '-yf', 'dist-upgrade'] 0m11.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: python3-numpy-dev The following packages will be upgraded: apt dpkg gcc-14-base libapt-pkg6.0t64 libc-bin libc6 libgcc-s1 libgfortran5 liblz4-1 libselinux1 libsemanage-common libsemanage2 libslow5-0t64 libstdc++6 libsystemd0 libudev1 libxxhash0 python3-numpy python3-slow5 tzdata 20 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 18.5 MB of archives. After this operation, 7662 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-14 [48.6 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-14 [72.7 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-14 [837 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-14 [713 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.40-6 [2816 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB] Get:7 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.10.0-3 [63.8 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 257.2-3 [450 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 257.2-3 [149 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.25 [1114 kB] Get:11 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.14 [1537 kB] Get:12 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.25 [1380 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.40-6 [631 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.7-3.1 [76.8 kB] Get:15 http://deb.debian.org/debian sid/main amd64 tzdata all 2025a-1 [259 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.7-2.1 [7208 B] Get:17 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.7-2.1 [91.2 kB] Get:18 http://deb.debian.org/debian sid/main amd64 python3-slow5 amd64 0.7.0+dfsg-3+b3 [563 kB] Get:19 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.2.2+ds-2 [7507 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.2.2+ds-2 [138 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libslow5-0t64 amd64 0.7.0+dfsg-3+b3 [66.8 kB] Preconfiguring packages ... Fetched 18.5 MB in 0s (70.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6847 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14.2.0-14_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-14) over (14.2.0-12) ... Setting up gcc-14-base:amd64 (14.2.0-14) ... (Reading database ... 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Preparing to unpack .../3-python3-slow5_0.7.0+dfsg-3+b3_amd64.deb ... Unpacking python3-slow5 (0.7.0+dfsg-3+b3) over (0.7.0+dfsg-3+b2) ... Preparing to unpack .../4-python3-numpy_1%3a2.2.2+ds-2_amd64.deb ... Unpacking python3-numpy (1:2.2.2+ds-2) over (1:1.26.4+ds-13) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../5-python3-numpy-dev_1%3a2.2.2+ds-2_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.2+ds-2) ... Preparing to unpack .../6-libslow5-0t64_0.7.0+dfsg-3+b3_amd64.deb ... Unpacking libslow5-0t64:amd64 (0.7.0+dfsg-3+b3) over (0.7.0+dfsg-3+b2) ... Setting up libsemanage-common (3.7-2.1) ... Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jan 27 16:01:28 UTC 2025. Universal Time is now: Mon Jan 27 16:01:28 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up python3-numpy-dev:amd64 (1:2.2.2+ds-2) ... Setting up libslow5-0t64:amd64 (0.7.0+dfsg-3+b3) ... Setting up python3-numpy (1:2.2.2+ds-2) ... Setting up libgfortran5:amd64 (14.2.0-14) ... Setting up libsemanage2:amd64 (3.7-2.1) ... Setting up python3-slow5 (0.7.0+dfsg-3+b3) ... Processing triggers for libc-bin (2.40-6) ... 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', '-yf', 'dist-upgrade'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m12.3s DUMP: 1bb1027cb6d8f9fa8448791a6b3537db - 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'show', '--no-all-versions', 'python3-slow5'] 0m12.4s DUMP: Package: python3-slow5 Source: libslow5lib (0.7.0+dfsg-3) Version: 0.7.0+dfsg-3+b3 Installed-Size: 8239 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libslow5-0t64 (= 0.7.0+dfsg-3+b3), libc6 (>= 2.34), libstreamvbyte0 (>= 0.4.1), zlib1g (>= 1:1.1.4), python3-numpy2-abi0 | python3-numpy-abi9, python3 (<< 3.14), python3 (>= 3.12~) Description-en: Python3 modul for reading & writing SLOW5 files Slow5lib is a software library for reading & writing SLOW5 files. Slow5lib is designed to facilitate use of data in SLOW5 format by third- party software packages. Existing packages that read/write data in FAST5 format can be easily modified to support SLOW5. . SLOW5 is a new file format for storing signal data from Oxford Nanopore Technologies (ONT) devices. SLOW5 was developed to overcome inherent limitations in the standard FAST5 signal data format that prevent efficient, scalable analysis and cause many headaches for developers. SLOW5 can be encoded in human-readable ASCII format, or a more compact and efficient binary format (BLOW5) - this is analogous to the seminal SAM/BAM format for storing DNA sequence alignments. The BLOW5 binary format supports *zlib* (DEFLATE) compression, or other compression methods, thereby minimising the data storage footprint while still permitting efficient parallel access. Detailed benchmarking experiments have shown that SLOW5 format is an order of magnitude faster and significantly smaller than FAST5. . This is the Python3 module. Description-md5: a7ebb83be36b43718b62e6c7b31bd827 Homepage: https://github.com/hasindu2008/slow5lib Section: python Priority: optional Filename: pool/main/libs/libslow5lib/python3-slow5_0.7.0+dfsg-3+b3_amd64.deb Size: 562892 MD5sum: c80f6d676e8f38ea2aa8f74b250d6851 SHA256: 1e95f9f2a9d1d4d59aaff8d439477f48ca6c7ed2566e54541c6ee2fa2d010a67 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'show', '--no-all-versions', 'python3-slow5'] 0m12.4s INFO: apt-cache knows about the following packages: python3-slow5 0m12.4s INFO: Running scripts pre_install 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_database-server'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_database-server'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_exceptions'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_exceptions'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_extras'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_extras'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'policy'] 0m12.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'policy'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'policy', 'python3-slow5'] 0m12.5s DUMP: python3-slow5: Installed: 0.7.0+dfsg-3+b3 Candidate: 0.7.0+dfsg-3+b3 Version table: *** 0.7.0+dfsg-3+b3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'policy', 'python3-slow5'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', '-y', 'install', 'python3-slow5'] 0m12.7s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-slow5 is already the newest version (0.7.0+dfsg-3+b3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', '-y', 'install', 'python3-slow5'] 0m12.7s INFO: Running scripts post_install 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_install_exceptions'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_install_exceptions'] 0m12.8s INFO: Running scripts post_distupgrade 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_distupgrade_exceptions'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_distupgrade_exceptions'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m12.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m13.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m13.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m13.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m13.3s INFO: Running scripts pre_install 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_database-server'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_database-server'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_exceptions'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_exceptions'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_extras'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_extras'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'policy'] 0m13.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'policy'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'policy', 'python3-slow5'] 0m13.3s DUMP: python3-slow5: Installed: 0.7.0+dfsg-3+b3 Candidate: 0.7.0+dfsg-3+b3 Version table: *** 0.7.0+dfsg-3+b3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-cache', 'policy', 'python3-slow5'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', '-y', 'install', 'python3-slow5=0.7.0+dfsg-3+b3'] 0m13.6s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-slow5 is already the newest version (0.7.0+dfsg-3+b3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', '-y', 'install', 'python3-slow5=0.7.0+dfsg-3+b3'] 0m13.6s INFO: Running scripts post_install 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_install_exceptions'] 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_install_exceptions'] 0m13.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m13.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m14.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', '-ac', '--ignore-obsolete'] 0m14.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', '-ac', '--ignore-obsolete'] 0m14.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m14.6s DUMP: 0.15.6 0m14.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m14.6s INFO: Running adequate version 0.15.6 now. 0m14.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'python3-slow5'] 0m14.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'python3-slow5'] 0m14.6s INFO: Running scripts pre_remove 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_remove_exceptions'] 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/pre_remove_exceptions'] 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m15.0s DUMP: install ok installed apt apt 2.9.25 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.4-1 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-11 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.14 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-14 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.25 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libblas3:amd64 libblas3 3.12.0-4 install ok installed libblkid1:amd64 libblkid1 2.40.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-6 install ok installed libc6:amd64 libc6 2.40-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libexpat1:amd64 libexpat1 2.6.4-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-14 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-14 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed liblapack3:amd64 liblapack3 3.12.0-4 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-3 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-1 install ok installed libncursesw6:amd64 libncursesw6 6.5-2+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.1-2 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.1-3 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.1-3 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3.1 install ok installed libsemanage-common libsemanage-common 3.7-2.1 install ok installed libsemanage2:amd64 libsemanage2 3.7-2.1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libslow5-0t64:amd64 libslow5-0t64 0.7.0+dfsg-3+b3 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.0-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-14 install ok installed libstreamvbyte0:amd64 libstreamvbyte0 0.4.1-4+b1 install ok installed libsystemd0:amd64 libsystemd0 257.2-3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 257.2-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-1 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40.4-1 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed netbase netbase 6.4 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.0-2 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl-base perl-base 5.40.0-8 install ok installed python3 python3 3.13.1-2 install ok installed python3-minimal python3-minimal 3.13.1-2 install ok installed python3-numpy python3-numpy 1:2.2.2+ds-2 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.2+ds-2 install ok installed python3-slow5 python3-slow5 0.7.0+dfsg-3+b3 install ok installed python3.13 python3.13 3.13.1-3 install ok installed python3.13-minimal python3.13-minimal 3.13.1-3 install ok installed readline-common readline-common 8.2-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-5 install ok installed sysvinit-utils sysvinit-utils 3.13-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-1 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', 'remove', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'liblapack3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libslow5-0t64:amd64', 'libsqlite3-0:amd64', 'libstreamvbyte0:amd64', 'media-types', 'netbase', 'python3', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3.13', 'python3.13-minimal', 'readline-common', 'python3-slow5'] 0m15.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libblas3 libexpat1 libffi8 libgfortran5 liblapack3 libncursesw6 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libslow5-0t64 libsqlite3-0 libstreamvbyte0 media-types netbase python3 python3-minimal python3-numpy python3-numpy-dev python3-slow5 python3.13 python3.13-minimal readline-common 0 upgraded, 0 newly installed, 23 to remove and 0 not upgraded. After this operation, 92.1 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6902 files and directories currently installed.) Removing python3-slow5 (0.7.0+dfsg-3+b3) ... Removing python3-numpy (1:2.2.2+ds-2) ... Removing liblapack3:amd64 (3.12.0-4) ... Removing libblas3:amd64 (3.12.0-4) ... Removing python3 (3.13.1-2) ... Removing python3.13 (3.13.1-3) ... Removing python3-minimal (3.13.1-2) ... Removing python3.13-minimal (3.13.1-3) ... Removing libexpat1:amd64 (2.6.4-1) ... Removing libpython3-stdlib:amd64 (3.13.1-2) ... Removing libpython3.13-stdlib:amd64 (3.13.1-3) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.4.6-1) ... Removing libgfortran5:amd64 (14.2.0-14) ... Removing libncursesw6:amd64 (6.5-2+b1) ... Removing libpython3.13-minimal:amd64 (3.13.1-3) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libslow5-0t64:amd64 (0.7.0+dfsg-3+b3) ... Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libstreamvbyte0:amd64 (0.4.1-4+b1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing python3-numpy-dev:amd64 (1:2.2.2+ds-2) ... Removing readline-common (8.2-6) ... Processing triggers for libc-bin (2.40-6) ... 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', 'remove', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'liblapack3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libslow5-0t64:amd64', 'libsqlite3-0:amd64', 'libstreamvbyte0:amd64', 'media-types', 'netbase', 'python3', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3.13', 'python3.13-minimal', 'readline-common', 'python3-slow5'] 0m15.7s INFO: Running scripts post_remove 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_remove_exceptions'] 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_remove_exceptions'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg', '--purge', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'liblapack3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libslow5-0t64:amd64', 'libsqlite3-0:amd64', 'libstreamvbyte0:amd64', 'media-types', 'netbase', 'python3', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3.13', 'python3.13-minimal', 'readline-common'] 0m15.7s DUMP: dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed (Reading database ... 5036 files and directories currently installed.) Purging configuration files for libpython3.13-minimal:amd64 (3.13.1-3) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove libslow5-0t64 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libstreamvbyte0 which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for python3 (3.13.1-2) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.1-3) ... Purging configuration files for readline-common (8.2-6) ... 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg', '--purge', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'liblapack3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libslow5-0t64:amd64', 'libsqlite3-0:amd64', 'libstreamvbyte0:amd64', 'media-types', 'netbase', 'python3', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3.13', 'python3.13-minimal', 'readline-common'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg', '--purge', 'python3-slow5'] 0m15.7s DUMP: dpkg: warning: ignoring request to remove python3-slow5 which isn't installed 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg', '--purge', 'python3-slow5'] 0m15.7s INFO: Running scripts post_purge 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_purge_exceptions'] 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_purge_exceptions'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg', '--purge', '--pending'] 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg', '--purge', '--pending'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg', '--remove', '--pending'] 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg', '--remove', '--pending'] 0m15.7s INFO: Running scripts post_test 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_test_exceptions'] 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'tmp/scripts/post_test_exceptions'] 0m15.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m15.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg-divert', '--list'] 0m15.9s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'dpkg-divert', '--list'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', 'clean'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj', 'apt-get', 'clean'] 0m15.9s DEBUG: Recording chroot state 0m16.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/shm'] 0m16.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/shm'] 0m16.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/console'] 0m16.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/console'] 0m16.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/ptmx'] 0m16.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/ptmx'] 0m16.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/pts'] 0m16.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/dev/pts'] 0m16.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/proc'] 0m16.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj/proc'] 0m16.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m16.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpedkp2zwj'] 0m16.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpedkp2zwj 0m16.5s INFO: PASS: Upgrading between Debian distributions. 0m16.5s INFO: PASS: All tests. 0m16.5s INFO: piuparts run ends. ret=0 End: 2025-01-27 16:01:34 GMT