Start: 2025-02-26 16:12:28 GMT [testing] Package: python3-unifrac Source: unifrac (1.3-4) Version: 1.3-4+b3 Installed-Size: 1022 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libssu0 (>= 1.4), python3 (<< 3.14), python3 (>= 3.12~), python3-biom-format, python3-h5py (>= 3.3.0), python3-iow, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-skbio (>= 0.6.1), python3:any Description: high-performance phylogenetic diversity calculations Homepage: https://github.com/biocore/unifrac Description-md5: d968493756bc6c4b0655277bddba48f3 Section: python Priority: optional Filename: pool/main/u/unifrac/python3-unifrac_1.3-4+b3_amd64.deb Size: 191132 MD5sum: bd5cdd84d9668fe75becfeb1437c72c8 SHA256: ef47206c7f504d719c510dfde288de526d2da816d2d161968c811c8141e211ea [sid] Package: python3-unifrac Source: unifrac (1.3-4) Version: 1.3-4+b4 Installed-Size: 722 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libssu0 (>= 1.4), python3 (<< 3.14), python3 (>= 3.13~), python3-biom-format, python3-h5py (>= 3.3.0), python3-iow, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-skbio (>= 0.6.1), python3:any Description: high-performance phylogenetic diversity calculations Homepage: https://github.com/biocore/unifrac Description-md5: d968493756bc6c4b0655277bddba48f3 Section: python Priority: optional Filename: pool/main/u/unifrac/python3-unifrac_1.3-4+b4_amd64.deb Size: 150952 MD5sum: eb803d12a5adf4cf995518e8845ac302 SHA256: a335c96b1a16c3d76d02f68fa0e2e97a8aece5c114945f08ed6804f84dfc09a0 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-unifrac=1.3-4+b4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-unifrac=1.3-4+b4 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpkxqfl0d3 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpkxqfl0d3 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.6s DEBUG: Created policy-rc.d and chmodded it. 0m0.6s DEBUG: Created resolv.conf. 0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpkxqfl0d3/tmp/scripts/ 0m0.6s INFO: Running scripts post_chroot_unpack 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', 'update'] 0m2.5s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [175 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9489 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6365 kB] Fetched 16.0 MB in 1s (14.1 MB/s) Reading package lists... 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', 'update'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following NEW packages will be installed: libapt-pkg7.0 The following packages will be upgraded: apt bash bsdutils libattr1 libblkid1 libc-bin libc6 libhogweed6t64 libmount1 libnettle8t64 libpcre2-8-0 libselinux1 libsemanage-common libsemanage2 libsmartcols1 libtinfo6 libuuid1 login login.defs mount ncurses-base ncurses-bin passwd util-linux 24 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 13.2 MB of archives. After this operation, 3980 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 bash amd64 5.2.37-1.1 [1500 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.40.4-4 [106 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 ncurses-bin amd64 6.5+20250216-1 [439 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libc6 amd64 2.40-7 [2815 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.40.4-4 [36.5 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.40.4-4 [169 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.40.4-4 [200 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.40.4-4 [140 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.40.4-4 [1206 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.40.4-4 [156 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libpcre2-8-0 amd64 10.45-1 [298 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libselinux1 amd64 3.8-3 [84.6 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libapt-pkg7.0 amd64 2.9.30 [1104 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 apt amd64 2.9.30 [1440 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libc-bin amd64 2.40-7 [631 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 ncurses-base all 6.5+20250216-1 [273 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.40.4-4 [88.7 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libattr1 amd64 1:2.5.2-3 [22.9 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libnettle8t64 amd64 3.10.1-1 [305 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libhogweed6t64 amd64 3.10.1-1 [335 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 libtinfo6 amd64 6.5+20250216-1 [348 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 login.defs all 1:4.17.2-5 [186 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 libsemanage-common all 3.8-1 [7720 B] Get:24 http://deb.debian.org/debian trixie/main amd64 libsemanage2 amd64 3.8-1 [94.4 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 passwd amd64 1:4.17.2-5 [1234 kB] Preconfiguring packages ... Fetched 13.2 MB in 0s (94.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../bash_5.2.37-1.1_amd64.deb ... Unpacking bash (5.2.37-1.1) over (5.2.37-1) ... Setting up bash (5.2.37-1.1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.4-4_amd64.deb ... Unpacking bsdutils (1:2.40.4-4) over (1:2.40.4-3) ... Setting up bsdutils (1:2.40.4-4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../libc6_2.40-7_amd64.deb ... Unpacking libc6:amd64 (2.40-7) over (2.40-6) ... Setting up libc6:amd64 (2.40-7) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../libblkid1_2.40.4-4_amd64.deb ... Unpacking libblkid1:amd64 (2.40.4-4) over (2.40.4-3) ... Setting up libblkid1:amd64 (2.40.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../libmount1_2.40.4-4_amd64.deb ... Unpacking libmount1:amd64 (2.40.4-4) over (2.40.4-3) ... Setting up libmount1:amd64 (2.40.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40.4-4_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40.4-4) over (2.40.4-3) ... Setting up libsmartcols1:amd64 (2.40.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.4-4_amd64.deb ... Unpacking util-linux (2.40.4-4) over (2.40.4-3) ... Setting up util-linux (2.40.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../mount_2.40.4-4_amd64.deb ... Unpacking mount (2.40.4-4) over (2.40.4-3) ... Preparing to unpack .../libpcre2-8-0_10.45-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.45-1) over (10.44-5) ... Setting up libpcre2-8-0:amd64 (10.45-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../libselinux1_3.8-3_amd64.deb ... Unpacking libselinux1:amd64 (3.8-3) over (3.7-3.1) ... Setting up libselinux1:amd64 (3.8-3) ... /var/lib/dpkg/info/libselinux1:amd64.postinst: 6: sestatus: not found Selecting previously unselected package libapt-pkg7.0:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5072 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.40.4-4_amd64.deb ... Unpacking login (1:4.16.0-2+really2.40.4-4) over (1:4.16.0-2+really2.40.4-3) ... Preparing to unpack .../libattr1_1%3a2.5.2-3_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.2-3) over (1:2.5.2-2) ... Setting up libattr1:amd64 (1:2.5.2-3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5071 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.10.1-1_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.10.1-1) over (3.10-1+b1) ... Setting up libhogweed6t64:amd64 (3.10.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5070 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.5+20250216-1_amd64.deb ... Unpacking libtinfo6:amd64 (6.5+20250216-1) over (6.5+20250125-2) ... Setting up libtinfo6:amd64 (6.5+20250216-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5070 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.17.2-5_all.deb ... Unpacking login.defs (1:4.17.2-5) over (1:4.16.0-7) ... Preparing to unpack .../libsemanage-common_3.8-1_all.deb ... Unpacking libsemanage-common (3.8-1) over (3.7-2.1) ... Preparing to unpack .../libsemanage2_3.8-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.8-1) over (3.7-2.1+b1) ... Preparing to unpack .../passwd_1%3a4.17.2-5_amd64.deb ... Unpacking passwd (1:4.17.2-5) over (1:4.16.0-7) ... Setting up login.defs (1:4.17.2-5) ... Setting up libsemanage-common (3.8-1) ... Setting up mount (2.40.4-4) ... Setting up libsemanage2:amd64 (3.8-1) ... Setting up login (1:4.16.0-2+really2.40.4-4) ... Setting up passwd (1:4.17.2-5) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for debianutils (5.21) ... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.1s DUMP: 1f461f5fd6e5010265ad01f8ee285300 - 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.1s INFO: Running scripts post_setup 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_setup_dummy_users'] 0m8.9s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_setup_dummy_users'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_setup_forbid_home'] 0m8.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_setup_forbid_home'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_setup_minimize'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_setup_minimize'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_setup_zz_backports'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_setup_zz_backports'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.0s DUMP: install ok installed apt apt 2.9.30 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1.1 install ok installed bsdutils bsdutils 1:2.40.4-4 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.15 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-16 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.29 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.30 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libblkid1:amd64 libblkid1 2.40.4-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-7 install ok installed libc6:amd64 libc6 2.40-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-16 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-3 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-4 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.8-3 install ok installed libsemanage-common libsemanage-common 3.8-1 install ok installed libsemanage2:amd64 libsemanage2 3.8-1 install ok installed libsepol2:amd64 libsepol2 3.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-4 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-16 install ok installed libsystemd0:amd64 libsystemd0 257.3-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-1 install ok installed libudev1:amd64 libudev1 257.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.4-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-4 install ok installed login.defs login.defs 1:4.17.2-5 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.40.4-4 install ok installed ncurses-base ncurses-base 6.5+20250216-1 install ok installed ncurses-bin ncurses-bin 6.5+20250216-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.2-5 install ok installed perl-base perl-base 5.40.1-2 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m9.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 0m9.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 0m9.4s INFO: Running scripts is_testable 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/is_testable_uninstallable'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/is_testable_uninstallable'] 0m9.4s INFO: Running scripts pre_test 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_test_exceptions'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_test_exceptions'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_test_root_password'] 0m9.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_test_root_password'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'show', '--no-all-versions', 'python3-unifrac'] 0m9.8s DUMP: Package: python3-unifrac Source: unifrac (1.3-4) Version: 1.3-4+b3 Installed-Size: 1022 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libssu0 (>= 1.4), python3 (<< 3.14), python3 (>= 3.12~), python3-biom-format, python3-h5py (>= 3.3.0), python3-iow, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-skbio (>= 0.6.1), python3:any Description-en: high-performance phylogenetic diversity calculations The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation. . This package contains the Python3 module. Description-md5: d968493756bc6c4b0655277bddba48f3 Homepage: https://github.com/biocore/unifrac Section: python Priority: optional Filename: pool/main/u/unifrac/python3-unifrac_1.3-4+b3_amd64.deb Size: 191132 MD5sum: bd5cdd84d9668fe75becfeb1437c72c8 SHA256: ef47206c7f504d719c510dfde288de526d2da816d2d161968c811c8141e211ea 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'show', '--no-all-versions', 'python3-unifrac'] 0m9.8s INFO: apt-cache knows about the following packages: python3-unifrac 0m9.8s INFO: Running scripts pre_install 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_database-server'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_database-server'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_exceptions'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_exceptions'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_extras'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_extras'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'policy'] 0m9.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'policy'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'policy', 'python3-unifrac'] 0m10.0s DUMP: python3-unifrac: Installed: (none) Candidate: 1.3-4+b3 Version table: 1.3-4+b3 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'policy', 'python3-unifrac'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', '-y', 'install', 'python3-unifrac'] 0m37.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates libaec0 libblas3 libbrotli1 libcurl4t64 libexpat1 libffi8 libgfortran5 libgnutls30t64 libgomp1 libgssapi-krb5-2 libhdf5-310 libhdf5-cpp-310 libhdf5-hl-310 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblapacke liblbfgsb0 libldap2 liblzf1 libncursesw6 libnghttp2-14 libnghttp3-9 libp11-kit0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libssu0 libssw0 libsz2 libtasn1-6 libtmglib3 libunistring5 media-types netbase openssl python3 python3-biom-format python3-certifi python3-chardet python3-charset-normalizer python3-click python3-dateutil python3-decorator python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-iow python3-minimal python3-natsort python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-patsy python3-pytz python3-requests python3-scipy python3-skbio python3-statsmodels python3-statsmodels-lib python3-tz python3-urllib3 python3.13 python3.13-minimal readline-common Suggested packages: gnutls-bin krb5-doc krb5-user python3-doc python3-tk python3-venv python-biom-format-doc python-charset-normalizer-doc python-h5py-doc python-natsort-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python-patsy-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-skbio-doc python-statsmodels-doc python3-brotli python3.13-venv python3.13-doc binutils binfmt-support readline-doc Recommended packages: krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba g++ | c++-compiler python3-pil python3-pooch python3-joblib python3-colorama python3-cvxopt The following NEW packages will be installed: ca-certificates libaec0 libblas3 libbrotli1 libcurl4t64 libexpat1 libffi8 libgfortran5 libgnutls30t64 libgomp1 libgssapi-krb5-2 libhdf5-310 libhdf5-cpp-310 libhdf5-hl-310 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblapacke liblbfgsb0 libldap2 liblzf1 libncursesw6 libnghttp2-14 libnghttp3-9 libp11-kit0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libssu0 libssw0 libsz2 libtasn1-6 libtmglib3 libunistring5 media-types netbase openssl python3 python3-biom-format python3-certifi python3-chardet python3-charset-normalizer python3-click python3-dateutil python3-decorator python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-iow python3-minimal python3-natsort python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-patsy python3-pytz python3-requests python3-scipy python3-skbio python3-statsmodels python3-statsmodels-lib python3-tz python3-unifrac python3-urllib3 python3.13 python3.13-minimal readline-common 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 70.6 MB of archives. After this operation, 372 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.2-1 [27.1 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5+20250216-1 [136 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.2-1 [10.0 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.2-1 [28.1 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-2 [138 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-16 [836 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:2.2.3+ds-2 [7517 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20241223 [164 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:28 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-16 [137 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get:46 http://deb.debian.org/debian trixie/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 libtmglib3 amd64 3.12.1-2 [125 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 liblapacke amd64 3.12.1-2 [381 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 libssu0 amd64 1.4-3+b4 [154 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 python3-h5py-serial amd64 3.13.0-1 [1618 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 python3-h5py all 3.13.0-1 [15.0 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 python3-click all 8.1.8-1 [95.2 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 python3-pytz all 2025.1-3 [150 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2025.1-3 [4004 B] Get:61 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-8 [7295 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.14.1-4 [20.5 MB] Get:65 http://deb.debian.org/debian trixie/main amd64 python3-biom-format amd64 2.1.16-1+b4 [174 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:67 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.1-1 [142 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 python3-hdmedians amd64 0.14.2-6 [177 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.3.0-1 [114 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 python3-patsy all 1.0.1-1 [172 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 python3-statsmodels-lib amd64 0.14.4+dfsg-1+b2 [2498 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 python3-statsmodels all 0.14.4+dfsg-1 [4825 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 python3-skbio amd64 0.6.2-4+b1 [1506 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 python3-iow amd64 1.0.7-1+b2 [561 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 python3-unifrac amd64 1.3-4+b3 [191 kB] Preconfiguring packages ... Fetched 70.6 MB in 0s (153 MB/s) Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5070 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../08-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... 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Selecting previously unselected package libhdf5-cpp-310:amd64. Preparing to unpack .../32-libhdf5-cpp-310_1.14.5+repack-3_amd64.deb ... Unpacking libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-hl-310:amd64. Preparing to unpack .../33-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Selecting previously unselected package libtmglib3:amd64. Preparing to unpack .../34-libtmglib3_3.12.1-2_amd64.deb ... Unpacking libtmglib3:amd64 (3.12.1-2) ... Selecting previously unselected package liblapacke:amd64. Preparing to unpack .../35-liblapacke_3.12.1-2_amd64.deb ... Unpacking liblapacke:amd64 (3.12.1-2) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../36-liblbfgsb0_3.0+dfsg.4-1+b2_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Selecting previously unselected package liblzf1:amd64. Preparing to unpack .../37-liblzf1_3.6-4+b3_amd64.deb ... Unpacking liblzf1:amd64 (3.6-4+b3) ... Selecting previously unselected package libssu0:amd64. Preparing to unpack .../38-libssu0_1.4-3+b4_amd64.deb ... Unpacking libssu0:amd64 (1.4-3+b4) ... Selecting previously unselected package libssw0:amd64. Preparing to unpack .../39-libssw0_1.1-15+b2_amd64.deb ... Unpacking libssw0:amd64 (1.1-15+b2) ... Selecting previously unselected package python3-h5py-serial. Preparing to unpack .../40-python3-h5py-serial_3.13.0-1_amd64.deb ... Unpacking python3-h5py-serial (3.13.0-1) ... Selecting previously unselected package python3-h5py. Preparing to unpack .../41-python3-h5py_3.13.0-1_all.deb ... Unpacking python3-h5py (3.13.0-1) ... Selecting previously unselected package python3-click. Preparing to unpack .../42-python3-click_8.1.8-1_all.deb ... Unpacking python3-click (8.1.8-1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../43-python3-dateutil_2.9.0-3_all.deb ... Unpacking python3-dateutil (2.9.0-3) ... Selecting previously unselected package python3-pytz. Preparing to unpack .../44-python3-pytz_2025.1-3_all.deb ... Unpacking python3-pytz (2025.1-3) ... Selecting previously unselected package python3-tz. Preparing to unpack .../45-python3-tz_2025.1-3_all.deb ... Unpacking python3-tz (2025.1-3) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../46-python3-pandas-lib_2.2.3+dfsg-8_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-8) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../47-python3-pandas_2.2.3+dfsg-8_all.deb ... Unpacking python3-pandas (2.2.3+dfsg-8) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../48-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../49-python3-scipy_1.14.1-4_amd64.deb ... Unpacking python3-scipy (1.14.1-4) ... Selecting previously unselected package python3-biom-format. Preparing to unpack .../50-python3-biom-format_2.1.16-1+b4_amd64.deb ... Unpacking python3-biom-format (2.1.16-1+b4) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../51-python3-certifi_2025.1.31+ds-1_all.deb ... Unpacking python3-certifi (2025.1.31+ds-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../52-python3-chardet_5.2.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-2) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../53-python3-charset-normalizer_3.4.1-1_amd64.deb ... Unpacking python3-charset-normalizer (3.4.1-1) ... Selecting previously unselected package python3-hdmedians. Preparing to unpack .../54-python3-hdmedians_0.14.2-6_amd64.deb ... Unpacking python3-hdmedians (0.14.2-6) ... Selecting previously unselected package python3-idna. Preparing to unpack .../55-python3-idna_3.10-1_all.deb ... Unpacking python3-idna (3.10-1) ... Selecting previously unselected package python3-natsort. Preparing to unpack .../56-python3-natsort_8.0.2-2_all.deb ... Unpacking python3-natsort (8.0.2-2) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../57-python3-urllib3_2.3.0-1_all.deb ... Unpacking python3-urllib3 (2.3.0-1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../58-python3-requests_2.32.3+dfsg-4_all.deb ... Unpacking python3-requests (2.32.3+dfsg-4) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../59-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-patsy. Preparing to unpack .../60-python3-patsy_1.0.1-1_all.deb ... Unpacking python3-patsy (1.0.1-1) ... Selecting previously unselected package python3-statsmodels-lib:amd64. Preparing to unpack .../61-python3-statsmodels-lib_0.14.4+dfsg-1+b2_amd64.deb ... Unpacking python3-statsmodels-lib:amd64 (0.14.4+dfsg-1+b2) ... Selecting previously unselected package python3-statsmodels. Preparing to unpack .../62-python3-statsmodels_0.14.4+dfsg-1_all.deb ... Unpacking python3-statsmodels (0.14.4+dfsg-1) ... Selecting previously unselected package python3-skbio. Preparing to unpack .../63-python3-skbio_0.6.2-4+b1_amd64.deb ... Unpacking python3-skbio (0.6.2-4+b1) ... Selecting previously unselected package python3-iow. Preparing to unpack .../64-python3-iow_1.0.7-1+b2_amd64.deb ... Unpacking python3-iow (1.0.7-1+b2) ... Selecting previously unselected package python3-unifrac. Preparing to unpack .../65-python3-unifrac_1.3-4+b3_amd64.deb ... Unpacking python3-unifrac (1.3-4+b3) ... Setting up media-types (10.1.0) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libgomp1:amd64 (14.2.0-16) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up liblzf1:amd64 (3.6-4+b3) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-2) ... Setting up libncursesw6:amd64 (6.5+20250216-1) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-16) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up openssl (3.4.1-1) ... Setting up libssw0:amd64 (1.1-15+b2) ... Setting up readline-common (8.2-6) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libtmglib3:amd64 (3.12.1-2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up liblapacke:amd64 (3.12.1-2) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up libpython3-stdlib:amd64 (3.13.2-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up python3.13 (3.13.2-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.2-1) ... Setting up python3-click (8.1.8-1) ... Setting up python3-natsort (8.0.2-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-idna (3.10-1) ... Setting up python3-numpy (1:2.2.3+ds-2) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up python3-hdmedians (0.14.2-6) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-statsmodels-lib:amd64 (0.14.4+dfsg-1+b2) ... Setting up python3-scipy (1.14.1-4) ... Setting up libcurl4t64:amd64 (8.12.1-2) ... Setting up python3-charset-normalizer (3.4.1-1) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-tz (2025.1-3) ... Setting up python3-patsy (1.0.1-1) ... Setting up python3-pandas (2.2.3+dfsg-8) ... Setting up python3-requests (2.32.3+dfsg-4) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up python3-statsmodels (0.14.4+dfsg-1) ... Setting up libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up libssu0:amd64 (1.4-3+b4) ... Setting up python3-h5py-serial (3.13.0-1) ... Setting up python3-h5py (3.13.0-1) ... Setting up python3-biom-format (2.1.16-1+b4) ... Setting up python3-skbio (0.6.2-4+b1) ... Setting up python3-iow (1.0.7-1+b2) ... Setting up python3-unifrac (1.3-4+b3) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', '-y', 'install', 'python3-unifrac'] 0m37.8s INFO: Running scripts post_install 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_install_exceptions'] 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_install_exceptions'] 0m37.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 0m38.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 0m38.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpkxqfl0d3 to sid 0m38.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m38.7s INFO: Running scripts pre_distupgrade 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_distupgrade_exceptions'] 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_distupgrade_exceptions'] 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', 'update'] 0m42.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7380 kB] Fetched 17.7 MB in 3s (5834 kB/s) Reading package lists... 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', 'update'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', '-yf', 'dist-upgrade'] 0m47.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bsdutils gcc-14-base libblkid1 libcap2 libcurl4t64 libgcc-s1 libgfortran5 libgomp1 libmount1 libselinux1 libsmartcols1 libstdc++6 libuuid1 login login.defs media-types mount passwd python3-click python3-iow python3-unifrac sysvinit-utils util-linux 23 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6508 kB of archives. After this operation, 1996 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.4-5 [106 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.4-5 [36.5 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.4-5 [169 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.4-5 [200 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.4-5 [140 kB] Get:6 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.4-5 [1205 kB] Get:7 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.4-5 [156 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.8-4 [84.8 kB] Get:9 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.14-3 [34.0 kB] Get:10 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.40.4-5 [88.7 kB] Get:11 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-17 [49.1 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-17 [713 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-17 [137 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-17 [836 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-17 [72.7 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.73-4 [27.3 kB] Get:17 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.17.3-1 [186 kB] Get:18 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.17.3-1 [1227 kB] Get:19 http://deb.debian.org/debian sid/main amd64 media-types all 12.0.0 [28.9 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.12.1-3 [369 kB] Get:21 http://deb.debian.org/debian sid/main amd64 python3-click all 8.2.0-1 [98.7 kB] Get:22 http://deb.debian.org/debian sid/main amd64 python3-iow amd64 1.0.7-1+b3 [393 kB] Get:23 http://deb.debian.org/debian sid/main amd64 python3-unifrac amd64 1.3-4+b4 [151 kB] Fetched 6508 kB in 0s (29.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14715 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.4-5_amd64.deb ... Unpacking bsdutils (1:2.40.4-5) over (1:2.40.4-4) ... Setting up bsdutils (1:2.40.4-5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14715 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40.4-5_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40.4-5) over (2.40.4-4) ... Setting up libsmartcols1:amd64 (2.40.4-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14715 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.4-5_amd64.deb ... Unpacking util-linux (2.40.4-5) over (2.40.4-4) ... Setting up util-linux (2.40.4-5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14715 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.14-3_amd64.deb ... Unpacking sysvinit-utils (3.14-3) over (3.14-1) ... Setting up sysvinit-utils (3.14-3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14715 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-17_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-17) over (14.2.0-16) ... Setting up libstdc++6:amd64 (14.2.0-17) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14715 files and directories currently installed.) Preparing to unpack .../libgomp1_14.2.0-17_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-17) over (14.2.0-16) ... Preparing to unpack .../libgfortran5_14.2.0-17_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-17) over (14.2.0-16) ... Preparing to unpack .../libgcc-s1_14.2.0-17_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-17) over (14.2.0-16) ... Setting up libgcc-s1:amd64 (14.2.0-17) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14715 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.73-4_amd64.deb ... Unpacking libcap2:amd64 (1:2.73-4) over (1:2.66-5+b1) ... Setting up libcap2:amd64 (1:2.73-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14714 files and directories currently installed.) Preparing to unpack .../0-login.defs_1%3a4.17.3-1_all.deb ... Unpacking login.defs (1:4.17.3-1) over (1:4.17.2-5) ... Preparing to unpack .../1-passwd_1%3a4.17.3-1_amd64.deb ... Unpacking passwd (1:4.17.3-1) over (1:4.17.2-5) ... Preparing to unpack .../2-media-types_12.0.0_all.deb ... Unpacking media-types (12.0.0) over (10.1.0) ... Preparing to unpack .../3-libcurl4t64_8.12.1-3_amd64.deb ... Unpacking libcurl4t64:amd64 (8.12.1-3) over (8.12.1-2) ... Preparing to unpack .../4-python3-click_8.2.0-1_all.deb ... Unpacking python3-click (8.2.0-1) over (8.1.8-1) ... Preparing to unpack .../5-python3-iow_1.0.7-1+b3_amd64.deb ... Unpacking python3-iow (1.0.7-1+b3) over (1.0.7-1+b2) ... Preparing to unpack .../6-python3-unifrac_1.3-4+b4_amd64.deb ... Unpacking python3-unifrac (1.3-4+b4) over (1.3-4+b3) ... Setting up media-types (12.0.0) ... Installing new version of config file /etc/mime.types ... Setting up libcurl4t64:amd64 (8.12.1-3) ... Setting up login.defs (1:4.17.3-1) ... Setting up libgomp1:amd64 (14.2.0-17) ... Setting up python3-click (8.2.0-1) ... Setting up libgfortran5:amd64 (14.2.0-17) ... Setting up passwd (1:4.17.3-1) ... Setting up mount (2.40.4-5) ... Setting up python3-iow (1.0.7-1+b3) ... Setting up login (1:4.16.0-2+really2.40.4-5) ... Setting up python3-unifrac (1.3-4+b4) ... Processing triggers for libc-bin (2.40-7) ... 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', '-yf', 'dist-upgrade'] 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m47.5s DUMP: 4ea0a2cc6085a971c14a89dfae1a8991 - 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'show', '--no-all-versions', 'python3-unifrac'] 0m47.8s DUMP: Package: python3-unifrac Source: unifrac (1.3-4) Version: 1.3-4+b4 Installed-Size: 722 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libssu0 (>= 1.4), python3 (<< 3.14), python3 (>= 3.13~), python3-biom-format, python3-h5py (>= 3.3.0), python3-iow, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-skbio (>= 0.6.1), python3:any Description-en: high-performance phylogenetic diversity calculations The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation. . This package contains the Python3 module. Description-md5: d968493756bc6c4b0655277bddba48f3 Homepage: https://github.com/biocore/unifrac Section: python Priority: optional Filename: pool/main/u/unifrac/python3-unifrac_1.3-4+b4_amd64.deb Size: 150952 MD5sum: eb803d12a5adf4cf995518e8845ac302 SHA256: a335c96b1a16c3d76d02f68fa0e2e97a8aece5c114945f08ed6804f84dfc09a0 0m47.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'show', '--no-all-versions', 'python3-unifrac'] 0m47.8s INFO: apt-cache knows about the following packages: python3-unifrac 0m47.8s INFO: Running scripts pre_install 0m47.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_database-server'] 0m47.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_database-server'] 0m47.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_exceptions'] 0m47.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_exceptions'] 0m47.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_extras'] 0m47.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_extras'] 0m47.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'policy'] 0m47.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'policy'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'policy', 'python3-unifrac'] 0m47.9s DUMP: python3-unifrac: Installed: 1.3-4+b4 Candidate: 1.3-4+b4 Version table: *** 1.3-4+b4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'policy', 'python3-unifrac'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', '-y', 'install', 'python3-unifrac'] 0m48.5s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-unifrac is already the newest version (1.3-4+b4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', '-y', 'install', 'python3-unifrac'] 0m48.5s INFO: Running scripts post_install 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_install_exceptions'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_install_exceptions'] 0m48.5s INFO: Running scripts post_distupgrade 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_distupgrade_exceptions'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_distupgrade_exceptions'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_distupgrade_zz_backports'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_distupgrade_zz_backports'] 0m48.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 0m49.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 0m49.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 0m50.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 0m50.4s INFO: Running scripts pre_install 0m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_database-server'] 0m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_database-server'] 0m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_exceptions'] 0m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_exceptions'] 0m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_extras'] 0m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_extras'] 0m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_foreign_architecture'] 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_foreign_architecture'] 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'policy'] 0m50.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'policy'] 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'policy', 'python3-unifrac'] 0m50.6s DUMP: python3-unifrac: Installed: 1.3-4+b4 Candidate: 1.3-4+b4 Version table: *** 1.3-4+b4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m50.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-cache', 'policy', 'python3-unifrac'] 0m50.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', '-y', 'install', 'python3-unifrac=1.3-4+b4'] 0m51.1s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-unifrac is already the newest version (1.3-4+b4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', '-y', 'install', 'python3-unifrac=1.3-4+b4'] 0m51.1s INFO: Running scripts post_install 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_install_exceptions'] 0m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_install_exceptions'] 0m51.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 0m52.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 0m52.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', '-ac', '--ignore-obsolete'] 0m54.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', '-ac', '--ignore-obsolete'] 0m54.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m54.5s DUMP: 0.15.6 0m54.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m54.5s INFO: Running adequate version 0.15.6 now. 0m54.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'python3-unifrac'] 0m54.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'python3-unifrac'] 0m54.6s INFO: Running scripts pre_remove 0m54.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m54.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m54.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m54.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m54.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m56.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m56.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m57.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m57.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_remove_exceptions'] 0m57.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/pre_remove_exceptions'] 0m57.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m57.2s DUMP: install ok installed apt apt 2.9.30 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1.1 install ok installed bsdutils bsdutils 1:2.40.4-5 install ok installed ca-certificates ca-certificates 20241223 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.15 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-17 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec0:amd64 libaec0 1.1.3-1+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.29 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.30 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libblas3:amd64 libblas3 3.12.1-2 install ok installed libblkid1:amd64 libblkid1 2.40.4-5 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b6 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-7 install ok installed libc6:amd64 libc6 2.40-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.73-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.12.1-3 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libexpat1:amd64 libexpat1 2.6.4-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libffi8:amd64 libffi8 3.4.7-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-17 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-17 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-17 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-4 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-3 install ok installed libhdf5-cpp-310:amd64 libhdf5-cpp-310 1.14.5+repack-3 install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.5+repack-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-4 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-4 install ok installed liblapack3:amd64 liblapack3 3.12.1-2 install ok installed liblapacke:amd64 liblapacke 3.12.1-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b2 install ok installed libldap2:amd64 libldap2 2.6.9+dfsg-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-3 install ok installed liblzf1:amd64 liblzf1 3.6-4+b3 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-5 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.6.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.2-1 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.2-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.2-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-8+b1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-8+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.8-4 install ok installed libsemanage-common libsemanage-common 3.8-1 install ok installed libsemanage2:amd64 libsemanage2 3.8-1 install ok installed libsepol2:amd64 libsepol2 3.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libssu0:amd64 libssu0 1.4-3+b4 install ok installed libssw0:amd64 libssw0 1.1-15+b2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-17 install ok installed libsystemd0:amd64 libsystemd0 257.3-1 install ok installed libsz2:amd64 libsz2 1.1.3-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-1 install ok installed libtmglib3:amd64 libtmglib3 3.12.1-2 install ok installed libudev1:amd64 libudev1 257.3-1 install ok installed libunistring5:amd64 libunistring5 1.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.4-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-5 install ok installed login.defs login.defs 1:4.17.3-1 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 12.0.0 install ok installed mount mount 2.40.4-5 install ok installed ncurses-base ncurses-base 6.5+20250216-1 install ok installed ncurses-bin ncurses-bin 6.5+20250216-1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.4.1-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.3-1 install ok installed perl-base perl-base 5.40.1-2 install ok installed python3 python3 3.13.2-1 install ok installed python3-biom-format python3-biom-format 2.1.16-1+b4 install ok installed python3-certifi python3-certifi 2025.1.31+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.1-1 install ok installed python3-click python3-click 8.2.0-1 install ok installed python3-dateutil python3-dateutil 2.9.0-3 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-h5py python3-h5py 3.13.0-1 install ok installed python3-h5py-serial python3-h5py-serial 3.13.0-1 install ok installed python3-hdmedians python3-hdmedians 0.14.2-6 install ok installed python3-idna python3-idna 3.10-1 install ok installed python3-iow python3-iow 1.0.7-1+b3 install ok installed python3-minimal python3-minimal 3.13.2-1 install ok installed python3-natsort python3-natsort 8.0.2-2 install ok installed python3-numpy python3-numpy 1:2.2.3+ds-2 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.3+ds-2 install ok installed python3-packaging python3-packaging 24.2-1 install ok installed python3-pandas python3-pandas 2.2.3+dfsg-8 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.2.3+dfsg-8 install ok installed python3-patsy python3-patsy 1.0.1-1 install ok installed python3-pytz python3-pytz 2025.1-3 install ok installed python3-requests python3-requests 2.32.3+dfsg-4 install ok installed python3-scipy python3-scipy 1.14.1-4 install ok installed python3-skbio python3-skbio 0.6.2-4+b1 install ok installed python3-statsmodels python3-statsmodels 0.14.4+dfsg-1 install ok installed python3-statsmodels-lib:amd64 python3-statsmodels-lib 0.14.4+dfsg-1+b2 install ok installed python3-tz python3-tz 2025.1-3 install ok installed python3-unifrac python3-unifrac 1.3-4+b4 install ok installed python3-urllib3 python3-urllib3 2.3.0-1 install ok installed python3.13 python3.13 3.13.2-1 install ok installed python3.13-minimal python3.13-minimal 3.13.2-1 install ok installed readline-common readline-common 8.2-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-3 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m57.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m57.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', 'remove', 'ca-certificates', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblapacke:amd64', 'liblbfgsb0:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssu0:amd64', 'libssw0:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtmglib3:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-biom-format', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-dateutil', 'python3-decorator', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-iow', 'python3-minimal', 'python3-natsort', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-patsy', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-skbio', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-tz', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'python3-unifrac'] 1m1.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates libaec0 libblas3 libbrotli1 libcurl4t64 libexpat1 libffi8 libgfortran5 libgnutls30t64 libgomp1 libgssapi-krb5-2 libhdf5-310 libhdf5-cpp-310 libhdf5-hl-310 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblapacke liblbfgsb0 libldap2 liblzf1 libncursesw6 libnghttp2-14 libnghttp3-9 libp11-kit0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libssu0 libssw0 libsz2 libtasn1-6 libtmglib3 libunistring5 media-types netbase openssl python3 python3-biom-format python3-certifi python3-chardet python3-charset-normalizer python3-click python3-dateutil python3-decorator python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-iow python3-minimal python3-natsort python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-patsy python3-pytz python3-requests python3-scipy python3-skbio python3-statsmodels python3-statsmodels-lib python3-tz python3-unifrac python3-urllib3 python3.13 python3.13-minimal readline-common 0 upgraded, 0 newly installed, 80 to remove and 0 not upgraded. After this operation, 370 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14706 files and directories currently installed.) Removing python3-unifrac (1.3-4+b4) ... Removing python3-iow (1.0.7-1+b3) ... Removing python3-skbio (0.6.2-4+b1) ... Removing python3-requests (2.32.3+dfsg-4) ... Removing python3-certifi (2025.1.31+ds-1) ... Removing ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libssu0:amd64 (1.4-3+b4) ... Removing python3-biom-format (2.1.16-1+b4) ... Removing python3-h5py (3.13.0-1) ... Removing python3-h5py-serial (3.13.0-1) ... Removing libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Removing python3-statsmodels (0.14.4+dfsg-1) ... Removing python3-scipy (1.14.1-4) ... Removing python3-statsmodels-lib:amd64 (0.14.4+dfsg-1+b2) ... Removing python3-hdmedians (0.14.2-6) ... Removing python3-pandas (2.2.3+dfsg-8) ... Removing python3-pandas-lib:amd64 (2.2.3+dfsg-8) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Removing liblapacke:amd64 (3.12.1-2) ... Removing libtmglib3:amd64 (3.12.1-2) ... Removing python3-charset-normalizer (3.4.1-1) ... Removing python3-urllib3 (2.3.0-1) ... Removing python3-tz (2025.1-3) ... Removing python3-pytz (2025.1-3) ... Removing libgomp1:amd64 (14.2.0-17) ... Removing libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... Removing liblzf1:amd64 (3.6-4+b3) ... Removing libssw0:amd64 (1.1-15+b2) ... Removing openssl (3.4.1-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-click (8.2.0-1) ... Removing python3-dateutil (2.9.0-3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-idna (3.10-1) ... Removing python3-natsort (8.0.2-2) ... Removing python3-packaging (24.2-1) ... Removing python3-patsy (1.0.1-1) ... Removing libhdf5-310:amd64 (1.14.5+repack-3) ... Removing libsz2:amd64 (1.1.3-1+b1) ... Removing libaec0:amd64 (1.1.3-1+b1) ... Removing python3-numpy (1:2.2.3+ds-2) ... Removing libcurl4t64:amd64 (8.12.1-3) ... Removing libbrotli1:amd64 (1.1.0-2+b6) ... Removing python3 (3.13.2-1) ... Removing python3-minimal (3.13.2-1) ... Removing python3.13 (3.13.2-1) ... Removing python3.13-minimal (3.13.2-1) ... Removing libexpat1:amd64 (2.6.4-1) ... Removing libpython3-stdlib:amd64 (3.13.2-1) ... Removing libpython3.13-stdlib:amd64 (3.13.2-1) ... find: '/usr/lib/python3': No such file or directory Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libgnutls30t64:amd64 (3.8.9-2) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libffi8:amd64 (3.4.7-1) ... Removing liblapack3:amd64 (3.12.1-2) ... Removing libgfortran5:amd64 (14.2.0-17) ... Removing libgssapi-krb5-2:amd64 (1.21.3-4) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.7-2+b1) ... Removing libkrb5-3:amd64 (1.21.3-4) ... Removing libk5crypto3:amd64 (1.21.3-4) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-4) ... Removing libldap2:amd64 (2.6.9+dfsg-1) ... Removing libncursesw6:amd64 (6.5+20250216-1) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libnghttp3-9:amd64 (1.6.0-2) ... Removing libpython3.13-minimal:amd64 (3.13.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libunistring5:amd64 (1.3-1) ... Removing media-types (12.0.0) ... Removing netbase (6.4) ... Removing python3-numpy-dev:amd64 (1:2.2.3+ds-2) ... Removing readline-common (8.2-6) ... Removing libblas3:amd64 (3.12.1-2) ... Processing triggers for libc-bin (2.40-7) ... 1m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', 'remove', 'ca-certificates', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblapacke:amd64', 'liblbfgsb0:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssu0:amd64', 'libssw0:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtmglib3:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-biom-format', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-dateutil', 'python3-decorator', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-iow', 'python3-minimal', 'python3-natsort', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-patsy', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-skbio', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-tz', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'python3-unifrac'] 1m1.7s INFO: Running scripts post_remove 1m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_remove_exceptions'] 1m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_remove_exceptions'] 1m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg', '--purge', 'ca-certificates', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblapacke:amd64', 'liblbfgsb0:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssu0:amd64', 'libssw0:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtmglib3:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-biom-format', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-dateutil', 'python3-decorator', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-iow', 'python3-minimal', 'python3-natsort', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-patsy', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-skbio', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-tz', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common'] 1m1.8s DUMP: (Reading database ... 5079 files and directories currently installed.) Purging configuration files for ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-4) ... dpkg: warning: ignoring request to remove libhdf5-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-cpp-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-310 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblapacke which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove libldap2 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.2-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libssu0 which isn't installed dpkg: warning: ignoring request to remove libssw0 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtmglib3 which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed Purging configuration files for media-types (12.0.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.4.1-1) ... Purging configuration files for python3 (3.13.2-1) ... dpkg: warning: ignoring request to remove python3-biom-format which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-hdmedians which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-iow which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-natsort which isn't installed Purging configuration files for python3-numpy (1:2.2.3+ds-2) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-patsy which isn't installed dpkg: warning: ignoring request to remove python3-pytz which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-skbio which isn't installed dpkg: warning: ignoring request to remove python3-statsmodels which isn't installed dpkg: warning: ignoring request to remove python3-statsmodels-lib which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.2-1) ... Purging configuration files for readline-common (8.2-6) ... 1m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg', '--purge', 'ca-certificates', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblapacke:amd64', 'liblbfgsb0:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssu0:amd64', 'libssw0:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtmglib3:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-biom-format', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-dateutil', 'python3-decorator', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-iow', 'python3-minimal', 'python3-natsort', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-patsy', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-skbio', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-tz', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common'] 1m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg', '--purge', 'python3-unifrac'] 1m1.8s DUMP: dpkg: warning: ignoring request to remove python3-unifrac which isn't installed 1m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg', '--purge', 'python3-unifrac'] 1m1.8s INFO: Running scripts post_purge 1m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_purge_exceptions'] 1m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_purge_exceptions'] 1m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg', '--purge', '--pending'] 1m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg', '--purge', '--pending'] 1m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg', '--remove', '--pending'] 1m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg', '--remove', '--pending'] 1m1.9s INFO: Running scripts post_test 1m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_test_exceptions'] 1m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'tmp/scripts/post_test_exceptions'] 1m1.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 1m2.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 1m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg-divert', '--list'] 1m2.3s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'dpkg-divert', '--list'] 1m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', 'clean'] 1m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3', 'apt-get', 'clean'] 1m2.3s DEBUG: Recording chroot state 1m3.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/shm'] 1m3.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/shm'] 1m3.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/console'] 1m3.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/console'] 1m3.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/ptmx'] 1m3.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/ptmx'] 1m3.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/pts'] 1m3.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/dev/pts'] 1m3.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/proc'] 1m3.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3/proc'] 1m3.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 1m3.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpkxqfl0d3'] 1m3.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpkxqfl0d3 1m3.5s INFO: PASS: Upgrading between Debian distributions. 1m3.5s INFO: PASS: All tests. 1m3.5s INFO: piuparts run ends. ret=0 End: 2025-02-26 16:13:31 GMT