Start: 2026-11-07 15:45:44 GMT [testing] Package: python3-unifrac Source: unifrac (1.5.1-1) Version: 1.5.1-1+b1 Installed-Size: 763 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libssu0 (>= 1.6.1), python3 (<< 3.15), python3 (>= 3.14~), python3-biom-format, python3-h5py (>= 3.3.0), python3-iow, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-skbio (>= 0.6.1), python3:any Description: high-performance phylogenetic diversity calculations Homepage: https://github.com/biocore/unifrac Description-md5: d968493756bc6c4b0655277bddba48f3 Section: python Priority: optional Filename: pool/main/u/unifrac/python3-unifrac_1.5.1-1+b1_amd64.deb Size: 151360 MD5sum: 7914e1a0c1dd23861035608ccd2d3cdf SHA256: 15450dd87017057d5aa51ab2fd9dc21de4312f6d2e178cd1f7320e5df77e756c [sid] Package: python3-unifrac Source: unifrac (1.5.1-1) Version: 1.5.1-1+b2 Installed-Size: 1054 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libssu0 (>= 1.7), python3 (<< 3.16), python3 (>= 3.14~), python3-biom-format, python3-h5py (>= 3.3.0), python3-iow, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-skbio (>= 0.6.1), python3:any Description: high-performance phylogenetic diversity calculations Homepage: https://github.com/biocore/unifrac Description-md5: d968493756bc6c4b0655277bddba48f3 Section: python Priority: optional Filename: pool/main/u/unifrac/python3-unifrac_1.5.1-1+b2_amd64.deb Size: 188132 MD5sum: c1a57dd2af7529923426c570452f7e05 SHA256: 9d4ef6ee8febf35adb9fb708141e6614e5b070918e3169b0af12aa3555376579 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-unifrac=1.5.1-1+b2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt python3-unifrac=1.5.1-1+b2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.115+deb13.1-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.115-2 (2026-11-01) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpba55xe_g 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpba55xe_g 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/13', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/13', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpba55xe_g/tmp/scripts/ 0m0.6s INFO: Running scripts post_chroot_unpack 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', 'update'] 0m2.7s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6699 kB] Fetched 17.0 MB in 1s (13.9 MB/s) Reading package lists... 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', 'update'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', '-yf', 'dist-upgrade'] 0m5.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following NEW packages will be installed: libcap2 The following packages will be upgraded: apt coreutils libapt-pkg7.0 libdb5.3t64 libpcre2-8-0 tar zlib1g 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 8208 kB of archives. After this operation, 2023 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libcap2 amd64 1:2.78-1+b1 [28.8 kB] Get:2 http://deb.debian.org/debian forky/main amd64 coreutils amd64 9.12-0.3 [3339 kB] Get:3 http://deb.debian.org/debian forky/main amd64 tar amd64 1.35+dfsg-7 [825 kB] Get:4 http://deb.debian.org/debian forky/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.2-4 [92.4 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.3.6 [1292 kB] Get:6 http://deb.debian.org/debian forky/main amd64 apt amd64 3.3.6 [1580 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-12 [737 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.49-1 [313 kB] Fetched 8208 kB in 0s (81.7 MB/s) Selecting previously unselected package libcap2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4948 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.78-1+b1_amd64.deb ... Unpacking libcap2:amd64 (1:2.78-1+b1) ... Setting up libcap2:amd64 (1:2.78-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4957 files and directories currently installed.) Preparing to unpack .../coreutils_9.12-0.3_amd64.deb ... Unpacking coreutils (9.12-0.3) over (9.10-1) ... Setting up coreutils (9.12-0.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4957 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-7_amd64.deb ... Unpacking tar (1.35+dfsg-7) over (1.35+dfsg-6) ... Setting up tar (1.35+dfsg-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4957 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg+really1.3.2-4_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg+really1.3.2-4) over (1:1.3.dfsg+really1.3.2-3) ... Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4957 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.3.6_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.3.6) over (3.3.3) ... Setting up libapt-pkg7.0:amd64 (3.3.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4957 files and directories currently installed.) Preparing to unpack .../archives/apt_3.3.6_amd64.deb ... Unpacking apt (3.3.6) over (3.3.3) ... Setting up apt (3.3.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4957 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-12_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-12) over (5.3.28+dfsg2-11+b1) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4956 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.49-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.49-1) over (10.48-3.1) ... Setting up libpcre2-8-0:amd64 (10.49-1) ... Processing triggers for libselinux1:amd64 (3.11-2.1+b1) ... Processing triggers for libc-bin (2.43-7) ... 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', '-yf', 'dist-upgrade'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.4s DUMP: 9e52a78a888206a14c87596504516375 - 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.4s INFO: Running scripts post_setup 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_setup_dummy_users'] 0m8.1s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_setup_dummy_users'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_setup_forbid_home'] 0m8.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_setup_forbid_home'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.1s DUMP: install ok installed apt apt 3.3.6 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.12-0.3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.6 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1+b1 install ok installed libcap2:amd64 libcap2 1:2.78-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-12 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.49-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b2 install ok installed libselinux1:amd64 libselinux1 3.11-2.1+b1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b2 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-7 install ok installed tzdata tzdata 2026f-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-4 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 0m8.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 0m8.5s INFO: Running scripts is_testable 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/is_testable_uninstallable'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/is_testable_uninstallable'] 0m8.5s INFO: Running scripts pre_test 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_test_exceptions'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_test_exceptions'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_test_root_password'] 0m8.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_test_root_password'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'show', '--no-all-versions', 'python3-unifrac'] 0m8.8s DUMP: Package: python3-unifrac Source: unifrac (1.5.1-1) Version: 1.5.1-1+b1 Installed-Size: 763 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libssu0 (>= 1.6.1), python3 (<< 3.15), python3 (>= 3.14~), python3-biom-format, python3-h5py (>= 3.3.0), python3-iow, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-skbio (>= 0.6.1), python3:any Description-en: high-performance phylogenetic diversity calculations The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation. . This package contains the Python3 module. Description-md5: d968493756bc6c4b0655277bddba48f3 Homepage: https://github.com/biocore/unifrac Section: python Priority: optional Filename: pool/main/u/unifrac/python3-unifrac_1.5.1-1+b1_amd64.deb Size: 151360 MD5sum: 7914e1a0c1dd23861035608ccd2d3cdf SHA256: 15450dd87017057d5aa51ab2fd9dc21de4312f6d2e178cd1f7320e5df77e756c 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'show', '--no-all-versions', 'python3-unifrac'] 0m8.8s INFO: apt-cache knows about the following packages: python3-unifrac 0m8.8s INFO: Running scripts pre_install 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'policy'] 0m8.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'policy'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'policy', 'python3-unifrac'] 0m8.9s DUMP: python3-unifrac: Installed: (none) Candidate: 1.5.1-1+b1 Version table: 1.5.1-1+b1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'policy', 'python3-unifrac'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', '-y', 'install', 'python3-unifrac'] 0m37.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: ca-certificates libblas3 libexpat1 libffi8 libgfortran5 libgomp1 libhdf5-320 libhdf5-cpp-320 libhdf5-hl-320 liblapack3 liblapacke liblzf1 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libskbb1 libsqlite3-0 libssu0 libsz2 libtmglib3 media-types netbase openssl python3 python3-array-api-compat python3-biom-format python3-certifi python3-chardet python3-charset-normalizer python3-click python3-dateutil python3-decorator python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-iniconfig python3-iow python3-minimal python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-patsy python3-pluggy python3-pygments python3-pytest python3-pytz python3-requests python3-scipy python3-skbio python3-statsmodels python3-statsmodels-lib python3-urllib3 python3.14 python3.14-minimal readline-common Suggested packages: python3-doc python3-tk python3-venv python-biom-format-doc python-charset-normalizer-doc python-h5py-doc gcc gfortran python-numpy-doc python3-dev python-pandas-doc python-patsy-doc python-pygments-doc ttf-bitstream-vera python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-skbio-doc python-statsmodels-doc python3-brotli python3.14-venv python3.14-doc binutils binfmt-support readline-doc Recommended packages: libgpm2 python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba g++ | c++-compiler python3-pil python3-pooch python3-yaml python3-joblib python3-colorama python3-cvxopt The following NEW packages will be installed: ca-certificates libblas3 libexpat1 libffi8 libgfortran5 libgomp1 libhdf5-320 libhdf5-cpp-320 libhdf5-hl-320 liblapack3 liblapacke liblzf1 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libskbb1 libsqlite3-0 libssu0 libsz2 libtmglib3 media-types netbase openssl python3 python3-array-api-compat python3-biom-format python3-certifi python3-chardet python3-charset-normalizer python3-click python3-dateutil python3-decorator python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-iniconfig python3-iow python3-minimal python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-patsy python3-pluggy python3-pygments python3-pytest python3-pytz python3-requests python3-scipy python3-skbio python3-statsmodels python3-statsmodels-lib python3-unifrac python3-urllib3 python3.14 python3.14-minimal readline-common 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 63.5 MB of archives. After this operation, 367 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.9.0-1 [133 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libpython3.14-minimal amd64 3.14.10-1 [905 kB] Get:3 http://deb.debian.org/debian forky/main amd64 python3.14-minimal amd64 3.14.10-1 [2734 kB] Get:4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:5 http://deb.debian.org/debian forky/main amd64 media-types all 14.0.0 [30.8 kB] Get:6 http://deb.debian.org/debian forky/main amd64 netbase all 6.6 [10.3 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-4 [74.8 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:12 http://deb.debian.org/debian forky/main amd64 libpython3.14-stdlib amd64 3.14.10-1 [2360 kB] Get:13 http://deb.debian.org/debian forky/main amd64 python3.14 amd64 3.14.10-1 [884 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:15 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:16 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-5+b1 [137 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:18 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 16.2.0-3 [879 kB] Get:19 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:20 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.4.6+ds-5+b1 [7252 kB] Get:21 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.6.5-1 [1554 kB] Get:22 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20260816+nmu1 [134 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 16.2.0-3 [151 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:25 http://deb.debian.org/debian forky/main amd64 libhdf5-320 amd64 2.2.0+repack-6 [2175 kB] Get:26 http://deb.debian.org/debian forky/main amd64 libhdf5-cpp-320 amd64 2.2.0+repack-6 [145 kB] Get:27 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-320 amd64 2.2.0+repack-6 [82.3 kB] Get:28 http://deb.debian.org/debian forky/main amd64 libtmglib3 amd64 3.12.1-8 [133 kB] Get:29 http://deb.debian.org/debian forky/main amd64 liblapacke amd64 3.12.1-8 [376 kB] Get:30 http://deb.debian.org/debian forky/main amd64 liblzf1 amd64 3.6-4+b4 [10.1 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Get:32 http://deb.debian.org/debian forky/main amd64 libskbb1 amd64 1.1.0-2 [64.6 kB] Get:33 http://deb.debian.org/debian forky/main amd64 libssu0 amd64 1.7-1 [203 kB] Get:34 http://deb.debian.org/debian forky/main amd64 python3-array-api-compat all 1.11.2-1 [37.8 kB] Get:35 http://deb.debian.org/debian forky/main amd64 python3-h5py-serial amd64 3.16.0-8 [1517 kB] Get:36 http://deb.debian.org/debian forky/main amd64 python3-h5py all 3.16.0-8 [15.1 kB] Get:37 http://deb.debian.org/debian forky/main amd64 python3-click all 8.3.3-3 [107 kB] Get:38 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-5 [78.7 kB] Get:39 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2026.6-1 [34.6 kB] Get:40 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-6 [5515 kB] Get:41 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.3.3+dfsg-6 [2930 kB] Get:42 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.3.1-1 [33.3 kB] Get:43 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.17.1-5+b2 [17.4 MB] Get:44 http://deb.debian.org/debian forky/main amd64 python3-biom-format amd64 2.1.18-1+b1 [204 kB] Get:45 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2026.10.23+ds-1 [9956 B] Get:46 http://deb.debian.org/debian forky/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:47 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.7-2+b3 [224 kB] Get:48 http://deb.debian.org/debian forky/main amd64 python3-hdmedians amd64 0.14.2-6+b4 [167 kB] Get:49 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.20-1 [45.8 kB] Get:50 http://deb.debian.org/debian forky/main amd64 python3-iniconfig all 2.1.0-2 [7540 B] Get:51 http://deb.debian.org/debian forky/main amd64 python3-packaging all 26.2-3 [84.3 kB] Get:52 http://deb.debian.org/debian forky/main amd64 python3-pluggy all 1.6.0-2 [27.2 kB] Get:53 http://deb.debian.org/debian forky/main amd64 python3-pygments all 2.20.0+dfsg-2 [850 kB] Get:54 http://deb.debian.org/debian forky/main amd64 python3-pytest all 9.1.1-1 [280 kB] Get:55 http://deb.debian.org/debian forky/main amd64 python3-patsy all 1.0.3-1 [172 kB] Get:56 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.8.0-2 [125 kB] Get:57 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.34.2-1 [77.6 kB] Get:58 http://deb.debian.org/debian forky/main amd64 python3-statsmodels-lib amd64 0.14.6+dfsg-3+b1 [1504 kB] Get:59 http://deb.debian.org/debian forky/main amd64 python3-statsmodels all 0.14.6+dfsg-3 [4822 kB] Get:60 http://deb.debian.org/debian forky/main amd64 python3-skbio amd64 0.7.4-2+b1 [1611 kB] Get:61 http://deb.debian.org/debian forky/main amd64 python3-iow amd64 1.0.8-1+b3 [551 kB] Get:62 http://deb.debian.org/debian forky/main amd64 python3-unifrac amd64 1.5.1-1+b1 [151 kB] Preconfiguring packages ... Fetched 63.5 MB in 1s (82.0 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4960 files and directories currently installed.) Preparing to unpack .../libexpat1_2.9.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.9.0-1) ... Selecting previously unselected package libpython3.14-minimal:amd64. Preparing to unpack .../libpython3.14-minimal_3.14.10-1_amd64.deb ... Unpacking libpython3.14-minimal:amd64 (3.14.10-1) ... Selecting previously unselected package python3.14-minimal. Preparing to unpack .../python3.14-minimal_3.14.10-1_amd64.deb ... Unpacking python3.14-minimal (3.14.10-1) ... Setting up libpython3.14-minimal:amd64 (3.14.10-1) ... Setting up libexpat1:amd64 (2.9.0-1) ... Setting up python3.14-minimal (3.14.10-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5316 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.14.7-3_amd64.deb ... Unpacking python3-minimal (3.14.7-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../03-libffi8_3.8.0-2_amd64.deb ... Unpacking libffi8:amd64 (3.8.0-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../06-libreadline8t64_8.3-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.53.4-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.53.4-2) ... Selecting previously unselected package libpython3.14-stdlib:amd64. Preparing to unpack .../08-libpython3.14-stdlib_3.14.10-1_amd64.deb ... Unpacking libpython3.14-stdlib:amd64 (3.14.10-1) ... Selecting previously unselected package python3.14. Preparing to unpack .../09-python3.14_3.14.10-1_amd64.deb ... Unpacking python3.14 (3.14.10-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../10-libpython3-stdlib_3.14.7-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3-minimal (3.14.7-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5846 files and directories currently installed.) Preparing to unpack .../00-python3_3.14.7-3_amd64.deb ... Unpacking python3 (3.14.7-3) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../01-python3-numpy-dev_1%3a2.4.6+ds-5+b1_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.4.6+ds-5+b1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../02-libblas3_3.12.1-8_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-8) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../03-libgfortran5_16.2.0-3_amd64.deb ... Unpacking libgfortran5:amd64 (16.2.0-3) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../04-liblapack3_3.12.1-8_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-8) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../05-python3-numpy_1%3a2.4.6+ds-5+b1_amd64.deb ... Unpacking python3-numpy (1:2.4.6+ds-5+b1) ... Selecting previously unselected package openssl. Preparing to unpack .../06-openssl_3.6.5-1_amd64.deb ... Unpacking openssl (3.6.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../07-ca-certificates_20260816+nmu1_all.deb ... Unpacking ca-certificates (20260816+nmu1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../08-libgomp1_16.2.0-3_amd64.deb ... Unpacking libgomp1:amd64 (16.2.0-3) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../09-libsz2_1.1.7-1_amd64.deb ... Unpacking libsz2:amd64 (1.1.7-1) ... Selecting previously unselected package libhdf5-320:amd64. Preparing to unpack .../10-libhdf5-320_2.2.0+repack-6_amd64.deb ... Unpacking libhdf5-320:amd64 (2.2.0+repack-6) ... Selecting previously unselected package libhdf5-cpp-320:amd64. Preparing to unpack .../11-libhdf5-cpp-320_2.2.0+repack-6_amd64.deb ... Unpacking libhdf5-cpp-320:amd64 (2.2.0+repack-6) ... Selecting previously unselected package libhdf5-hl-320:amd64. Preparing to unpack .../12-libhdf5-hl-320_2.2.0+repack-6_amd64.deb ... Unpacking libhdf5-hl-320:amd64 (2.2.0+repack-6) ... Selecting previously unselected package libtmglib3:amd64. Preparing to unpack .../13-libtmglib3_3.12.1-8_amd64.deb ... Unpacking libtmglib3:amd64 (3.12.1-8) ... Selecting previously unselected package liblapacke:amd64. Preparing to unpack .../14-liblapacke_3.12.1-8_amd64.deb ... Unpacking liblapacke:amd64 (3.12.1-8) ... Selecting previously unselected package liblzf1:amd64. Preparing to unpack .../15-liblzf1_3.6-4+b4_amd64.deb ... Unpacking liblzf1:amd64 (3.6-4+b4) ... Selecting previously unselected package libqhull-r8.0:amd64. Preparing to unpack .../16-libqhull-r8.0_2020.2-9_amd64.deb ... Unpacking libqhull-r8.0:amd64 (2020.2-9) ... Selecting previously unselected package libskbb1:amd64. Preparing to unpack .../17-libskbb1_1.1.0-2_amd64.deb ... Unpacking libskbb1:amd64 (1.1.0-2) ... Selecting previously unselected package libssu0:amd64. Preparing to unpack .../18-libssu0_1.7-1_amd64.deb ... Unpacking libssu0:amd64 (1.7-1) ... Selecting previously unselected package python3-array-api-compat. Preparing to unpack .../19-python3-array-api-compat_1.11.2-1_all.deb ... Unpacking python3-array-api-compat (1.11.2-1) ... Selecting previously unselected package python3-h5py-serial. Preparing to unpack .../20-python3-h5py-serial_3.16.0-8_amd64.deb ... Unpacking python3-h5py-serial (3.16.0-8) ... Selecting previously unselected package python3-h5py. Preparing to unpack .../21-python3-h5py_3.16.0-8_all.deb ... Unpacking python3-h5py (3.16.0-8) ... Selecting previously unselected package python3-click. Preparing to unpack .../22-python3-click_8.3.3-3_all.deb ... Unpacking python3-click (8.3.3-3) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../23-python3-dateutil_2.9.0-5_all.deb ... Unpacking python3-dateutil (2.9.0-5) ... Selecting previously unselected package python3-pytz. Preparing to unpack .../24-python3-pytz_2026.6-1_all.deb ... Unpacking python3-pytz (2026.6-1) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../25-python3-pandas-lib_2.3.3+dfsg-6_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-6) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../26-python3-pandas_2.3.3+dfsg-6_all.deb ... Unpacking python3-pandas (2.3.3+dfsg-6) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../27-python3-decorator_5.3.1-1_all.deb ... Unpacking python3-decorator (5.3.1-1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../28-python3-scipy_1.17.1-5+b2_amd64.deb ... Unpacking python3-scipy (1.17.1-5+b2) ... Selecting previously unselected package python3-biom-format. Preparing to unpack .../29-python3-biom-format_2.1.18-1+b1_amd64.deb ... Unpacking python3-biom-format (2.1.18-1+b1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../30-python3-certifi_2026.10.23+ds-1_all.deb ... Unpacking python3-certifi (2026.10.23+ds-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../31-python3-chardet_5.2.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-2) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../32-python3-charset-normalizer_3.4.7-2+b3_amd64.deb ... Unpacking python3-charset-normalizer (3.4.7-2+b3) ... Selecting previously unselected package python3-hdmedians. Preparing to unpack .../33-python3-hdmedians_0.14.2-6+b4_amd64.deb ... Unpacking python3-hdmedians (0.14.2-6+b4) ... Selecting previously unselected package python3-idna. Preparing to unpack .../34-python3-idna_3.20-1_all.deb ... Unpacking python3-idna (3.20-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../35-python3-iniconfig_2.1.0-2_all.deb ... Unpacking python3-iniconfig (2.1.0-2) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../36-python3-packaging_26.2-3_all.deb ... Unpacking python3-packaging (26.2-3) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../37-python3-pluggy_1.6.0-2_all.deb ... Unpacking python3-pluggy (1.6.0-2) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../38-python3-pygments_2.20.0+dfsg-2_all.deb ... Unpacking python3-pygments (2.20.0+dfsg-2) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../39-python3-pytest_9.1.1-1_all.deb ... Unpacking python3-pytest (9.1.1-1) ... Selecting previously unselected package python3-patsy. Preparing to unpack .../40-python3-patsy_1.0.3-1_all.deb ... Unpacking python3-patsy (1.0.3-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../41-python3-urllib3_2.8.0-2_all.deb ... Unpacking python3-urllib3 (2.8.0-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../42-python3-requests_2.34.2-1_all.deb ... Unpacking python3-requests (2.34.2-1) ... Selecting previously unselected package python3-statsmodels-lib:amd64. Preparing to unpack .../43-python3-statsmodels-lib_0.14.6+dfsg-3+b1_amd64.deb ... Unpacking python3-statsmodels-lib:amd64 (0.14.6+dfsg-3+b1) ... Selecting previously unselected package python3-statsmodels. Preparing to unpack .../44-python3-statsmodels_0.14.6+dfsg-3_all.deb ... Unpacking python3-statsmodels (0.14.6+dfsg-3) ... Selecting previously unselected package python3-skbio. Preparing to unpack .../45-python3-skbio_0.7.4-2+b1_amd64.deb ... Unpacking python3-skbio (0.7.4-2+b1) ... Selecting previously unselected package python3-iow. Preparing to unpack .../46-python3-iow_1.0.8-1+b3_amd64.deb ... Unpacking python3-iow (1.0.8-1+b3) ... Selecting previously unselected package python3-unifrac. Preparing to unpack .../47-python3-unifrac_1.5.1-1+b1_amd64.deb ... Unpacking python3-unifrac (1.5.1-1+b1) ... Setting up media-types (14.0.0) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libqhull-r8.0:amd64 (2020.2-9) ... Setting up libgomp1:amd64 (16.2.0-3) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up liblzf1:amd64 (3.6-4+b4) ... Setting up python3-numpy-dev:amd64 (1:2.4.6+ds-5+b1) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libgfortran5:amd64 (16.2.0-3) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up netbase (6.6) ... Setting up openssl (3.6.5-1) ... Setting up readline-common (8.3-4) ... Setting up libsz2:amd64 (1.1.7-1) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 120 added, 0 removed; done. Setting up libtmglib3:amd64 (3.12.1-8) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up liblapacke:amd64 (3.12.1-8) ... Setting up libhdf5-320:amd64 (2.2.0+repack-6) ... Setting up libhdf5-cpp-320:amd64 (2.2.0+repack-6) ... Setting up libpython3.14-stdlib:amd64 (3.14.10-1) ... Setting up libskbb1:amd64 (1.1.0-2) ... Setting up libhdf5-hl-320:amd64 (2.2.0+repack-6) ... Setting up python3.14 (3.14.10-1) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up libssu0:amd64 (1.7-1) ... Setting up python3 (3.14.7-3) ... Setting up python3-click (8.3.3-3) ... Setting up python3-decorator (5.3.1-1) ... Setting up python3-pygments (2.20.0+dfsg-2) ... Setting up python3-packaging (26.2-3) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2026.10.23+ds-1) ... Setting up python3-idna (3.20-1) ... Setting up python3-numpy (1:2.4.6+ds-5+b1) ... Setting up python3-urllib3 (2.8.0-2) ... Setting up python3-pluggy (1.6.0-2) ... Setting up python3-hdmedians (0.14.2-6+b4) ... Setting up python3-dateutil (2.9.0-5) ... Setting up python3-statsmodels-lib:amd64 (0.14.6+dfsg-3+b1) ... Setting up python3-iniconfig (2.1.0-2) ... Setting up python3-scipy (1.17.1-5+b2) ... Setting up python3-charset-normalizer (3.4.7-2+b3) ... Setting up python3-pytest (9.1.1-1) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-6) ... Setting up python3-array-api-compat (1.11.2-1) ... Setting up python3-h5py-serial (3.16.0-8) ... Setting up python3-pytz (2026.6-1) ... Setting up python3-patsy (1.0.3-1) ... Setting up python3-pandas (2.3.3+dfsg-6) ... Setting up python3-requests (2.34.2-1) ... Setting up python3-h5py (3.16.0-8) ... Setting up python3-statsmodels (0.14.6+dfsg-3) ... Setting up python3-biom-format (2.1.18-1+b1) ... Setting up python3-skbio (0.7.4-2+b1) ... Setting up python3-iow (1.0.8-1+b3) ... Setting up python3-unifrac (1.5.1-1+b1) ... Processing triggers for libc-bin (2.43-7) ... Processing triggers for ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', '-y', 'install', 'python3-unifrac'] 0m37.7s INFO: Running scripts post_install 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_install_exceptions'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_install_exceptions'] 0m37.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 0m38.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 0m38.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpba55xe_g to sid 0m38.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m38.6s INFO: Running scripts pre_distupgrade 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_distupgrade_exceptions'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_distupgrade_exceptions'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', 'update'] 0m42.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7780 kB] Fetched 18.8 MB in 2s (7796 kB/s) Reading package lists... 0m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', 'update'] 0m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', '-yf', 'dist-upgrade'] 0m49.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt gcc-16-base libapt-pkg7.0 libaudit-common libaudit1 libexpat1 libgcc-s1 libgfortran5 libgomp1 libpython3-stdlib libsqlite3-0 libstdc++6 libsystemd0 libsz2 libudev1 python3 python3-dateutil python3-minimal python3-statsmodels python3-statsmodels-lib python3-unifrac 21 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 14.9 MB of archives. After this operation, 17.2 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16.2.0-4 [151 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16.2.0-4 [877 kB] Get:3 http://deb.debian.org/debian sid/main amd64 gcc-16-base amd64 16.2.0-4 [39.3 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 16.2.0-4 [74.1 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 16.2.0-4 [822 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 262.2-1 [513 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 262.2-1 [149 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 3.3.7 [1293 kB] Get:9 http://deb.debian.org/debian sid/main amd64 apt amd64 3.3.7 [1580 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.10.0-1 [135 kB] Get:11 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.14.8-1 [25.8 kB] Get:12 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.14.8-1 [26.3 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.14.8-1 [8520 B] Get:14 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.2.1-1+b1 [59.9 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.54.1-2 [1020 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.8-1 [20.0 kB] Get:18 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 4.0.0-1 [90.7 kB] Get:19 http://deb.debian.org/debian sid/main amd64 python3-statsmodels-lib amd64 0.15.0+dfsg-2 [1829 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3-statsmodels all 0.15.0+dfsg-2 [5943 kB] Get:21 http://deb.debian.org/debian sid/main amd64 python3-unifrac amd64 1.5.1-1+b2 [188 kB] Fetched 14.9 MB in 0s (59.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13869 files and directories currently installed.) Preparing to unpack .../libgomp1_16.2.0-4_amd64.deb ... Unpacking libgomp1:amd64 (16.2.0-4) over (16.2.0-3) ... Preparing to unpack .../libgfortran5_16.2.0-4_amd64.deb ... Unpacking libgfortran5:amd64 (16.2.0-4) over (16.2.0-3) ... Preparing to unpack .../gcc-16-base_16.2.0-4_amd64.deb ... Unpacking gcc-16-base:amd64 (16.2.0-4) over (16.2.0-3) ... Setting up gcc-16-base:amd64 (16.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13869 files and directories currently installed.) Preparing to unpack .../libgcc-s1_16.2.0-4_amd64.deb ... Unpacking libgcc-s1:amd64 (16.2.0-4) over (16.2.0-3) ... Setting up libgcc-s1:amd64 (16.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13869 files and directories currently installed.) Preparing to unpack .../libstdc++6_16.2.0-4_amd64.deb ... Unpacking libstdc++6:amd64 (16.2.0-4) over (16.2.0-3) ... Setting up libstdc++6:amd64 (16.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13869 files and directories currently installed.) Preparing to unpack .../libsystemd0_262.2-1_amd64.deb ... Unpacking libsystemd0:amd64 (262.2-1) over (262-1) ... Setting up libsystemd0:amd64 (262.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13869 files and directories currently installed.) Preparing to unpack .../libudev1_262.2-1_amd64.deb ... Unpacking libudev1:amd64 (262.2-1) over (262-1) ... Setting up libudev1:amd64 (262.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13869 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.3.7_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.3.7) over (3.3.6) ... Setting up libapt-pkg7.0:amd64 (3.3.7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13869 files and directories currently installed.) Preparing to unpack .../archives/apt_3.3.7_amd64.deb ... Unpacking apt (3.3.7) over (3.3.6) ... Setting up apt (3.3.7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13869 files and directories currently installed.) Preparing to unpack .../libexpat1_2.10.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.10.0-1) over (2.9.0-1) ... Preparing to unpack .../python3-minimal_3.14.8-1_amd64.deb ... Unpacking python3-minimal (3.14.8-1) over (3.14.7-3) ... Setting up python3-minimal (3.14.8-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13869 files and directories currently installed.) Preparing to unpack .../python3_3.14.8-1_amd64.deb ... Unpacking python3 (3.14.8-1) over (3.14.7-3) ... Preparing to unpack .../libpython3-stdlib_3.14.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.14.8-1) over (3.14.7-3) ... Preparing to unpack .../libaudit-common_1%3a4.2.1-1_all.deb ... Unpacking libaudit-common (1:4.2.1-1) over (1:4.1.2-1) ... Setting up libaudit-common (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13869 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.2.1-1+b1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.2.1-1+b1) over (1:4.1.2-1+b2) ... Setting up libaudit1:amd64 (1:4.2.1-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13869 files and directories currently installed.) Preparing to unpack .../0-libsqlite3-0_3.54.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.54.1-2) over (3.53.4-2) ... Preparing to unpack .../1-libsz2_1.1.8-1_amd64.deb ... Unpacking libsz2:amd64 (1.1.8-1) over (1.1.7-1) ... Preparing to unpack .../2-python3-dateutil_4.0.0-1_all.deb ... Unpacking python3-dateutil (4.0.0-1) over (2.9.0-5) ... Preparing to unpack .../3-python3-statsmodels-lib_0.15.0+dfsg-2_amd64.deb ... Unpacking python3-statsmodels-lib:amd64 (0.15.0+dfsg-2) over (0.14.6+dfsg-3+b1) ... Preparing to unpack .../4-python3-statsmodels_0.15.0+dfsg-2_all.deb ... Unpacking python3-statsmodels (0.15.0+dfsg-2) over (0.14.6+dfsg-3) ... Preparing to unpack .../5-python3-unifrac_1.5.1-1+b2_amd64.deb ... Unpacking python3-unifrac (1.5.1-1+b2) over (1.5.1-1+b1) ... Setting up libexpat1:amd64 (2.10.0-1) ... Setting up libsqlite3-0:amd64 (3.54.1-2) ... Setting up libgomp1:amd64 (16.2.0-4) ... Setting up libgfortran5:amd64 (16.2.0-4) ... Setting up libsz2:amd64 (1.1.8-1) ... Setting up libpython3-stdlib:amd64 (3.14.8-1) ... Setting up python3 (3.14.8-1) ... Setting up python3-unifrac (1.5.1-1+b2) ... Setting up python3-dateutil (4.0.0-1) ... Setting up python3-statsmodels-lib:amd64 (0.15.0+dfsg-2) ... Setting up python3-statsmodels (0.15.0+dfsg-2) ... Processing triggers for libc-bin (2.43-7) ... 0m49.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', '-yf', 'dist-upgrade'] 0m49.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m51.0s DUMP: 4aa4b9fbecf2edad38683a939afe54cf - 0m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'show', '--no-all-versions', 'python3-unifrac'] 0m51.3s DUMP: Package: python3-unifrac Source: unifrac (1.5.1-1) Version: 1.5.1-1+b2 Installed-Size: 1054 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libssu0 (>= 1.7), python3 (<< 3.16), python3 (>= 3.14~), python3-biom-format, python3-h5py (>= 3.3.0), python3-iow, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-skbio (>= 0.6.1), python3:any Description-en: high-performance phylogenetic diversity calculations The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation. . This package contains the Python3 module. Description-md5: d968493756bc6c4b0655277bddba48f3 Homepage: https://github.com/biocore/unifrac Section: python Priority: optional Filename: pool/main/u/unifrac/python3-unifrac_1.5.1-1+b2_amd64.deb Size: 188132 MD5sum: c1a57dd2af7529923426c570452f7e05 SHA256: 9d4ef6ee8febf35adb9fb708141e6614e5b070918e3169b0af12aa3555376579 0m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'show', '--no-all-versions', 'python3-unifrac'] 0m51.3s INFO: apt-cache knows about the following packages: python3-unifrac 0m51.3s INFO: Running scripts pre_install 0m51.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_database-server'] 0m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_database-server'] 0m51.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_exceptions'] 0m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_exceptions'] 0m51.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_extras'] 0m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_extras'] 0m51.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_foreign_architecture'] 0m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_foreign_architecture'] 0m51.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m51.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'policy'] 0m51.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'policy'] 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'policy', 'python3-unifrac'] 0m51.4s DUMP: python3-unifrac: Installed: 1.5.1-1+b2 Candidate: 1.5.1-1+b2 Version table: *** 1.5.1-1+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'policy', 'python3-unifrac'] 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', '-y', 'install', 'python3-unifrac'] 0m52.3s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-unifrac is already the newest version (1.5.1-1+b2). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', '-y', 'install', 'python3-unifrac'] 0m52.3s INFO: Running scripts post_install 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_install_exceptions'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_install_exceptions'] 0m52.3s INFO: Running scripts post_distupgrade 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_distupgrade_exceptions'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_distupgrade_exceptions'] 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_distupgrade_zz_backports'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_distupgrade_zz_backports'] 0m52.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 0m53.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 0m53.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 0m54.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 0m54.3s INFO: Running scripts pre_install 0m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_database-server'] 0m54.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_database-server'] 0m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_exceptions'] 0m54.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_exceptions'] 0m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_extras'] 0m54.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_extras'] 0m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_foreign_architecture'] 0m54.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_foreign_architecture'] 0m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m54.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'policy'] 0m54.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m54.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'policy'] 0m54.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'policy', 'python3-unifrac'] 0m54.4s DUMP: python3-unifrac: Installed: 1.5.1-1+b2 Candidate: 1.5.1-1+b2 Version table: *** 1.5.1-1+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m54.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-cache', 'policy', 'python3-unifrac'] 0m54.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', '-y', 'install', 'python3-unifrac=1.5.1-1+b2'] 0m55.4s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-unifrac is already the newest version (1.5.1-1+b2). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', '-y', 'install', 'python3-unifrac=1.5.1-1+b2'] 0m55.4s INFO: Running scripts post_install 0m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_install_exceptions'] 0m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_install_exceptions'] 0m55.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 0m56.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 0m57.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', '-ac', '--ignore-obsolete'] 0m58.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', '-ac', '--ignore-obsolete'] 0m58.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m58.8s DUMP: 0.17.5+b5 0m58.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m58.8s INFO: Running adequate version 0.17.5+b5 now. 0m58.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'python3-unifrac'] 0m58.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'python3-unifrac'] 0m58.8s INFO: Running scripts pre_remove 0m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m58.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m58.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m58.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m58.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m60.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m60.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m60.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m60.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_remove_exceptions'] 1m0.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/pre_remove_exceptions'] 1m0.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m0.0s DUMP: install ok installed apt apt 3.3.7 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed ca-certificates ca-certificates 20260816+nmu1 install ok installed coreutils coreutils 9.12-0.3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-4 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.7 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1+b1 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1+b1 install ok installed libcap2:amd64 libcap2 1:2.78-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-12 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libexpat1:amd64 libexpat1 2.10.0-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-4 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgomp1:amd64 libgomp1 16.2.0-4 install ok installed libhdf5-320:amd64 libhdf5-320 2.2.0+repack-6 install ok installed libhdf5-cpp-320:amd64 libhdf5-cpp-320 2.2.0+repack-6 install ok installed libhdf5-hl-320:amd64 libhdf5-hl-320 2.2.0+repack-6 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed liblapacke:amd64 liblapacke 3.12.1-8 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzf1:amd64 liblzf1 3.6-4+b4 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.49-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.8-1 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.10-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.10-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-9 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b2 install ok installed libselinux1:amd64 libselinux1 3.11-2.1+b1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b2 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libskbb1:amd64 libskbb1 1.1.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.54.1-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libssu0:amd64 libssu0 1.7-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 262.2-1 install ok installed libsz2:amd64 libsz2 1.1.8-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libtmglib3:amd64 libtmglib3 3.12.1-8 install ok installed libudev1:amd64 libudev1 262.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed openssl openssl 3.6.5-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed python3 python3 3.14.8-1 install ok installed python3-array-api-compat python3-array-api-compat 1.11.2-1 install ok installed python3-biom-format python3-biom-format 2.1.18-1+b1 install ok installed python3-certifi python3-certifi 2026.10.23+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.7-2+b3 install ok installed python3-click python3-click 8.3.3-3 install ok installed python3-dateutil python3-dateutil 4.0.0-1 install ok installed python3-decorator python3-decorator 5.3.1-1 install ok installed python3-h5py python3-h5py 3.16.0-8 install ok installed python3-h5py-serial python3-h5py-serial 3.16.0-8 install ok installed python3-hdmedians python3-hdmedians 0.14.2-6+b4 install ok installed python3-idna python3-idna 3.20-1 install ok installed python3-iniconfig python3-iniconfig 2.1.0-2 install ok installed python3-iow python3-iow 1.0.8-1+b3 install ok installed python3-minimal python3-minimal 3.14.8-1 install ok installed python3-numpy python3-numpy 1:2.4.6+ds-5+b1 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.4.6+ds-5+b1 install ok installed python3-packaging python3-packaging 26.2-3 install ok installed python3-pandas python3-pandas 2.3.3+dfsg-6 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.3.3+dfsg-6 install ok installed python3-patsy python3-patsy 1.0.3-1 install ok installed python3-pluggy python3-pluggy 1.6.0-2 install ok installed python3-pygments python3-pygments 2.20.0+dfsg-2 install ok installed python3-pytest python3-pytest 9.1.1-1 install ok installed python3-pytz python3-pytz 2026.6-1 install ok installed python3-requests python3-requests 2.34.2-1 install ok installed python3-scipy python3-scipy 1.17.1-5+b2 install ok installed python3-skbio python3-skbio 0.7.4-2+b1 install ok installed python3-statsmodels python3-statsmodels 0.15.0+dfsg-2 install ok installed python3-statsmodels-lib:amd64 python3-statsmodels-lib 0.15.0+dfsg-2 install ok installed python3-unifrac python3-unifrac 1.5.1-1+b2 install ok installed python3-urllib3 python3-urllib3 2.8.0-2 install ok installed python3.14 python3.14 3.14.10-1 install ok installed python3.14-minimal python3.14-minimal 3.14.10-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-7 install ok installed tzdata tzdata 2026f-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-4 1m0.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m0.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-320:amd64', 'libhdf5-cpp-320:amd64', 'libhdf5-hl-320:amd64', 'liblapack3:amd64', 'liblapacke:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libskbb1:amd64', 'libsqlite3-0:amd64', 'libssu0:amd64', 'libsz2:amd64', 'libtmglib3:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-array-api-compat', 'python3-biom-format', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-dateutil', 'python3-decorator', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-iniconfig', 'python3-iow', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-patsy', 'python3-pluggy', 'python3-pygments', 'python3-pytest', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-skbio', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-urllib3', 'python3.14', 'python3.14-minimal', 'readline-common', 'python3-unifrac'] 1m5.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ca-certificates libblas3 libexpat1 libffi8 libgfortran5 libgomp1 libhdf5-320 libhdf5-cpp-320 libhdf5-hl-320 liblapack3 liblapacke liblzf1 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libskbb1 libsqlite3-0 libssu0 libsz2 libtmglib3 media-types netbase openssl python3 python3-array-api-compat python3-biom-format python3-certifi python3-chardet python3-charset-normalizer python3-click python3-dateutil python3-decorator python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-iniconfig python3-iow python3-minimal python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-patsy python3-pluggy python3-pygments python3-pytest python3-pytz python3-requests python3-scipy python3-skbio python3-statsmodels python3-statsmodels-lib python3-unifrac python3-urllib3 python3.14 python3.14-minimal readline-common 0 upgraded, 0 newly installed, 62 to remove and 0 not upgraded. After this operation, 384 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14080 files and directories currently installed.) Removing python3-unifrac (1.5.1-1+b2) ... Removing python3-iow (1.0.8-1+b3) ... Removing python3-skbio (0.7.4-2+b1) ... Removing python3-requests (2.34.2-1) ... Removing python3-certifi (2026.10.23+ds-1) ... Removing ca-certificates (20260816+nmu1) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-statsmodels (0.15.0+dfsg-2) ... Removing python3-biom-format (2.1.18-1+b1) ... Removing python3-scipy (1.17.1-5+b2) ... Removing libssu0:amd64 (1.7-1) ... Removing libskbb1:amd64 (1.1.0-2) ... Removing python3-statsmodels-lib:amd64 (0.15.0+dfsg-2) ... Removing python3-patsy (1.0.3-1) ... Removing python3-hdmedians (0.14.2-6+b4) ... Removing liblapacke:amd64 (3.12.1-8) ... Removing libtmglib3:amd64 (3.12.1-8) ... Removing python3-urllib3 (2.8.0-2) ... Removing python3-pandas (2.3.3+dfsg-6) ... Removing python3-charset-normalizer (3.4.7-2+b3) ... Removing python3-pytz (2026.6-1) ... Removing libgomp1:amd64 (16.2.0-4) ... Removing python3-h5py (3.16.0-8) ... Removing python3-h5py-serial (3.16.0-8) ... Removing libhdf5-hl-320:amd64 (2.2.0+repack-6) ... Removing libhdf5-cpp-320:amd64 (2.2.0+repack-6) ... Removing libhdf5-320:amd64 (2.2.0+repack-6) ... Removing liblzf1:amd64 (3.6-4+b4) ... Removing libqhull-r8.0:amd64 (2020.2-9) ... Removing libsz2:amd64 (1.1.8-1) ... Removing openssl (3.6.5-1) ... Removing python3-array-api-compat (1.11.2-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-click (8.3.3-3) ... Removing python3-dateutil (4.0.0-1) ... Removing python3-decorator (5.3.1-1) ... Removing python3-idna (3.20-1) ... Removing python3-pytest (9.1.1-1) ... Removing python3-iniconfig (2.1.0-2) ... Removing python3-packaging (26.2-3) ... Removing python3-pandas-lib:amd64 (2.3.3+dfsg-6) ... Removing python3-pluggy (1.6.0-2) ... Removing python3-pygments (2.20.0+dfsg-2) ... Removing python3-numpy (1:2.4.6+ds-5+b1) ... Removing python3 (3.14.8-1) ... Removing python3.14 (3.14.10-1) ... Removing python3-minimal (3.14.8-1) ... Removing python3.14-minimal (3.14.10-1) ... Removing libexpat1:amd64 (2.10.0-1) ... Removing libpython3-stdlib:amd64 (3.14.8-1) ... Removing libpython3.14-stdlib:amd64 (3.14.10-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.8.0-2) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libgfortran5:amd64 (16.2.0-4) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libpython3.14-minimal:amd64 (3.14.10-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.54.1-2) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing python3-numpy-dev:amd64 (1:2.4.6+ds-5+b1) ... Removing readline-common (8.3-4) ... Removing libblas3:amd64 (3.12.1-8) ... Processing triggers for libc-bin (2.43-7) ... 1m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-320:amd64', 'libhdf5-cpp-320:amd64', 'libhdf5-hl-320:amd64', 'liblapack3:amd64', 'liblapacke:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libskbb1:amd64', 'libsqlite3-0:amd64', 'libssu0:amd64', 'libsz2:amd64', 'libtmglib3:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-array-api-compat', 'python3-biom-format', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-dateutil', 'python3-decorator', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-iniconfig', 'python3-iow', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-patsy', 'python3-pluggy', 'python3-pygments', 'python3-pytest', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-skbio', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-urllib3', 'python3.14', 'python3.14-minimal', 'readline-common', 'python3-unifrac'] 1m5.9s INFO: Running scripts post_remove 1m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_remove_exceptions'] 1m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_remove_exceptions'] 1m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg', '--purge', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-320:amd64', 'libhdf5-cpp-320:amd64', 'libhdf5-hl-320:amd64', 'liblapack3:amd64', 'liblapacke:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libskbb1:amd64', 'libsqlite3-0:amd64', 'libssu0:amd64', 'libsz2:amd64', 'libtmglib3:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-array-api-compat', 'python3-biom-format', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-dateutil', 'python3-decorator', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-iniconfig', 'python3-iow', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-patsy', 'python3-pluggy', 'python3-pygments', 'python3-pytest', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-skbio', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-urllib3', 'python3.14', 'python3.14-minimal', 'readline-common'] 1m6.0s DUMP: (Reading database ... 4970 files and directories currently installed.) Purging configuration files for ca-certificates (20260816+nmu1) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libhdf5-320 which is not installed dpkg: warning: ignoring request to remove libhdf5-cpp-320 which is not installed dpkg: warning: ignoring request to remove libhdf5-hl-320 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove liblapacke which is not installed dpkg: warning: ignoring request to remove liblzf1 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.14-minimal:amd64 (3.14.10-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed dpkg: warning: ignoring request to remove libqhull-r8.0 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libskbb1 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libssu0 which is not installed dpkg: warning: ignoring request to remove libsz2 which is not installed dpkg: warning: ignoring request to remove libtmglib3 which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.6) ... Purging configuration files for openssl (3.6.5-1) ... Purging configuration files for python3 (3.14.8-1) ... dpkg: warning: ignoring request to remove python3-array-api-compat which is not installed dpkg: warning: ignoring request to remove python3-biom-format which is not installed dpkg: warning: ignoring request to remove python3-certifi which is not installed dpkg: warning: ignoring request to remove python3-chardet which is not installed dpkg: warning: ignoring request to remove python3-charset-normalizer which is not installed dpkg: warning: ignoring request to remove python3-click which is not installed dpkg: warning: ignoring request to remove python3-dateutil which is not installed dpkg: warning: ignoring request to remove python3-decorator which is not installed dpkg: warning: ignoring request to remove python3-h5py which is not installed dpkg: warning: ignoring request to remove python3-h5py-serial which is not installed dpkg: warning: ignoring request to remove python3-hdmedians which is not installed dpkg: warning: ignoring request to remove python3-idna which is not installed dpkg: warning: ignoring request to remove python3-iniconfig which is not installed dpkg: warning: ignoring request to remove python3-iow which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed Purging configuration files for python3-numpy (1:2.4.6+ds-5+b1) ... dpkg: warning: ignoring request to remove python3-numpy-dev which is not installed dpkg: warning: ignoring request to remove python3-packaging which is not installed dpkg: warning: ignoring request to remove python3-pandas which is not installed dpkg: warning: ignoring request to remove python3-pandas-lib which is not installed dpkg: warning: ignoring request to remove python3-patsy which is not installed dpkg: warning: ignoring request to remove python3-pluggy which is not installed dpkg: warning: ignoring request to remove python3-pygments which is not installed dpkg: warning: ignoring request to remove python3-pytest which is not installed dpkg: warning: ignoring request to remove python3-pytz which is not installed dpkg: warning: ignoring request to remove python3-requests which is not installed dpkg: warning: ignoring request to remove python3-scipy which is not installed dpkg: warning: ignoring request to remove python3-skbio which is not installed dpkg: warning: ignoring request to remove python3-statsmodels which is not installed dpkg: warning: ignoring request to remove python3-statsmodels-lib which is not installed dpkg: warning: ignoring request to remove python3-urllib3 which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.10-1) ... Purging configuration files for readline-common (8.3-4) ... 1m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg', '--purge', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-320:amd64', 'libhdf5-cpp-320:amd64', 'libhdf5-hl-320:amd64', 'liblapack3:amd64', 'liblapacke:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libskbb1:amd64', 'libsqlite3-0:amd64', 'libssu0:amd64', 'libsz2:amd64', 'libtmglib3:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-array-api-compat', 'python3-biom-format', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-dateutil', 'python3-decorator', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-iniconfig', 'python3-iow', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-patsy', 'python3-pluggy', 'python3-pygments', 'python3-pytest', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-skbio', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-urllib3', 'python3.14', 'python3.14-minimal', 'readline-common'] 1m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg', '--purge', 'python3-unifrac'] 1m6.0s DUMP: dpkg: warning: ignoring request to remove python3-unifrac which is not installed 1m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg', '--purge', 'python3-unifrac'] 1m6.0s INFO: Running scripts post_purge 1m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_purge_exceptions'] 1m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_purge_exceptions'] 1m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg', '--purge', '--pending'] 1m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg', '--purge', '--pending'] 1m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg', '--remove', '--pending'] 1m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg', '--remove', '--pending'] 1m6.0s INFO: Running scripts post_test 1m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_test_exceptions'] 1m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'tmp/scripts/post_test_exceptions'] 1m6.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 1m6.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 1m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg-divert', '--list'] 1m6.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'dpkg-divert', '--list'] 1m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', 'clean'] 1m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpba55xe_g', 'apt-get', 'clean'] 1m6.4s DEBUG: Recording chroot state 1m7.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/shm'] 1m7.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/shm'] 1m7.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/console'] 1m7.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/console'] 1m7.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/ptmx'] 1m7.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/ptmx'] 1m7.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/pts'] 1m7.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/dev/pts'] 1m7.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/proc'] 1m7.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpba55xe_g/proc'] 1m7.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 1m7.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpba55xe_g'] 1m7.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpba55xe_g 1m7.6s INFO: PASS: Upgrading between Debian distributions. 1m7.6s INFO: PASS: All tests. 1m7.6s INFO: piuparts run ends. ret=0 End: 2026-11-07 15:46:52 GMT