Start: 2022-12-05 05:06:39 GMT [testing] Package: qcumber Version: 2.3.0-2 Installed-Size: 236 Maintainer: Debian Med Packaging Team Architecture: all Replaces: qc-pipeline Provides: qc-pipeline Depends: python3:any, debconf (>= 0.5) | debconf-2.0, python3-jinja2, python3-matplotlib, python3-biopython, libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake Conflicts: qc-pipeline Description: quality control of genomic sequences Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber Description-md5: 380ba80499911de0a248a18cb1009872 Section: science Priority: optional Filename: pool/main/q/qcumber/qcumber_2.3.0-2_all.deb Size: 50488 MD5sum: e8e75d1efdd4265bdbe9e121b7109314 SHA256: 033afeb7358c5e35109c648bbc275842755dc14c328f84007af5a389c06501cb [sid] Package: qcumber Version: 2.3.0-2 Installed-Size: 236 Maintainer: Debian Med Packaging Team Architecture: all Replaces: qc-pipeline Provides: qc-pipeline Depends: python3:any, debconf (>= 0.5) | debconf-2.0, python3-jinja2, python3-matplotlib, python3-biopython, libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake Conflicts: qc-pipeline Description: quality control of genomic sequences Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber Description-md5: 380ba80499911de0a248a18cb1009872 Section: science Priority: optional Filename: pool/main/q/qcumber/qcumber_2.3.0-2_all.deb Size: 50488 MD5sum: e8e75d1efdd4265bdbe9e121b7109314 SHA256: 033afeb7358c5e35109c648bbc275842755dc14c328f84007af5a389c06501cb Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt qcumber=2.3.0-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt qcumber=2.3.0-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpzaihre7j 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpzaihre7j 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/proc'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/proc'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/pts'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/pts'] 0m2.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/ptmx'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/ptmx'] 0m2.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/console'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/console'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/shm'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/shm'] 0m2.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.2s DEBUG: Created policy-rc.d and chmodded it. 0m2.2s DEBUG: Created resolv.conf. 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpzaihre7j/tmp/scripts/ 0m2.3s INFO: Running scripts post_chroot_unpack 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', 'update'] 0m5.3s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [164 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8781 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5930 kB] Fetched 14.9 MB in 2s (6414 kB/s) Reading package lists... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', 'update'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', '-yf', 'dist-upgrade'] 0m7.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: debconf libacl1 libc-bin libc6 libsystemd0 libudev1 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3929 kB of archives. After this operation, 24.6 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-6 [2745 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-6 [604 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 debconf all 1.5.80 [121 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libacl1 amd64 2.3.1-2 [25.2 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.2-1 [329 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.2-1 [106 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3929 kB in 0s (38.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8594 files and directories currently installed.) Preparing to unpack .../libc6_2.36-6_amd64.deb ... Unpacking libc6:amd64 (2.36-6) over (2.36-5) ... Setting up libc6:amd64 (2.36-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8594 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-6_amd64.deb ... Unpacking libc-bin (2.36-6) over (2.36-5) ... Setting up libc-bin (2.36-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8594 files and directories currently installed.) Preparing to unpack .../debconf_1.5.80_all.deb ... Unpacking debconf (1.5.80) over (1.5.79) ... Setting up debconf (1.5.80) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8594 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.1-2_amd64.deb ... Unpacking libacl1:amd64 (2.3.1-2) over (2.3.1-1) ... Setting up libacl1:amd64 (2.3.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8595 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.2-1_amd64.deb ... Unpacking libsystemd0:amd64 (252.2-1) over (252.1-1) ... Setting up libsystemd0:amd64 (252.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8595 files and directories currently installed.) Preparing to unpack .../libudev1_252.2-1_amd64.deb ... Unpacking libudev1:amd64 (252.2-1) over (252.1-1) ... Setting up libudev1:amd64 (252.2-1) ... Processing triggers for libc-bin (2.36-6) ... 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', '-yf', 'dist-upgrade'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.1s DUMP: c06e69d136c4494b1e97bdf68a9f2e15 - 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.1s INFO: Running scripts post_setup 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_setup_dummy_users'] 0m8.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_setup_dummy_users'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_setup_forbid_home'] 0m8.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_setup_forbid_home'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_setup_minimize'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_setup_minimize'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_setup_zz_backports'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_setup_zz_backports'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.8s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.80 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9+b1 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-9 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-6 install ok installed libc6:amd64 libc6 2.36-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.8-0.0 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-2 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b3 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b3 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 252.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 252.2-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-4 install ok installed perl-base perl-base 5.36.0-4 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-4 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.05-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 33 install ok installed usrmerge usrmerge 33 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 0m9.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 0m9.2s INFO: Running scripts is_testable 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/is_testable_uninstallable'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/is_testable_uninstallable'] 0m9.2s INFO: Running scripts pre_test 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_test_exceptions'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_test_exceptions'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_test_root_password'] 0m9.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_test_root_password'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 0m9.6s DUMP: Package: qcumber Version: 2.3.0-2 Installed-Size: 236 Maintainer: Debian Med Packaging Team Architecture: all Replaces: qc-pipeline Provides: qc-pipeline Depends: python3:any, debconf (>= 0.5) | debconf-2.0, python3-jinja2, python3-matplotlib, python3-biopython, libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake Conflicts: qc-pipeline Description-en: quality control of genomic sequences QCPipeline is a tool for quality control. The workflow is as follows: . 1. Quality control with FastQC 2. Trim Reads with Trimmomatic 3. Quality control of trimmed reads with FastQC 4. Map reads against reference using bowtie2 5. Classify reads with Kraken Description-md5: 380ba80499911de0a248a18cb1009872 Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber Section: science Priority: optional Filename: pool/main/q/qcumber/qcumber_2.3.0-2_all.deb Size: 50488 MD5sum: e8e75d1efdd4265bdbe9e121b7109314 SHA256: 033afeb7358c5e35109c648bbc275842755dc14c328f84007af5a389c06501cb 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 0m9.6s INFO: apt-cache knows about the following packages: qcumber 0m9.6s INFO: Running scripts pre_install 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_database-server'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_database-server'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_exceptions'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_exceptions'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_extras'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_extras'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'policy'] 0m9.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'policy'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'policy', 'qcumber'] 0m9.8s DUMP: qcumber: Installed: (none) Candidate: 2.3.0-2 Version table: 2.3.0-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'policy', 'qcumber'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', '-y', 'install', 'qcumber'] 3m42.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cpp cpp-12 docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 gir1.2-glib-2.0 git git-man libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libcurl4 libdatrie1 libdeflate0 liberror-perl libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu72 libimagequant0 libisl23 libitm1 libjbig0 libjpeg62-turbo libjs-angularjs libjs-bootstrap libjs-d3 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 libmd0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsodium23 libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxt6 libyaml-0-2 linux-libc-dev littler media-types openssl python-matplotlib-data python3 python3-adal python3-aiohttp python3-aiosignal python3-all python3-all-dev python3-appdirs python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-beniget python3-biopython python3-blinker python3-boto3 python3-botocore python3-brotli python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-colorama python3-configargparse python3-connection-pool python3-cryptography python3-cycler python3-dateutil python3-datrie python3-decorator python3-dev python3-distutils python3-docutils python3-fastjsonschema python3-fonttools python3-frozenlist python3-fs python3-gast python3-gi python3-git python3-gitdb python3-idna python3-isodate python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-markupsafe python3-marshmallow python3-matplotlib python3-minimal python3-mpmath python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-nbformat python3-numpy python3-oauthlib python3-packaging python3-paramiko python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-portalocker python3-psutil python3-pulp python3-pyparsing python3-pyrsistent python3-pythran python3-ratelimiter python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-requests-oauthlib python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-scipy python3-six python3-smart-open python3-smmap python3-stopit python3-strictyaml python3-sympy python3-tabulate python3-tk python3-toposort python3-tqdm python3-traitlets python3-typing-extensions python3-tz python3-uamqp python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wrapt python3-yaml python3-yarl python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-minimal r-base-core r-bioc-biocgenerics r-bioc-savr r-cran-caret r-cran-class r-cran-cli r-cran-codetools r-cran-colorspace r-cran-conquer r-cran-cpp11 r-cran-data.table r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-foreach r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-ipred r-cran-isoband r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lava r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-modelmetrics r-cran-munsell r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proc r-cran-prodlim r-cran-progressr r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-recipes r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-scales r-cran-sparsem r-cran-squarem r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml readline-common rpcsvc-proto sensible-utils sgml-base snakemake tk8.6-blt2.5 ucf unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zip zlib1g-dev Suggested packages: binutils-doc blt-demo cpp-doc gcc-12-locales cpp-12-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-12-multilib gcc-12-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc low-memory-monitor krb5-doc krb5-user libjs-jquery-ui-docs liblcms2-utils libstdc++-12-doc tcl8.6 tk8.6 libxsimd-doc python3-doc python3-venv python-attr-doc python-azure-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise python-blinker-doc python-cryptography-doc python3-cryptography-vectors python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-fastjsonschema-doc python-git-doc python-jinja2-doc python-jsonschema-doc python3-pip python3-crypto python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 python-nacl-doc gfortran python-numpy-doc python3-pytest python3-gssapi python-pil-doc python3-setuptools python-ply-doc python-psutil-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3-openssl python3-socks python-requests-doc python-scipy-doc python3-nose texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc binfmt-support python3.11-venv python3.11-doc elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-biobase r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit r-cran-cairo r-cran-testthat r-cran-bradleyterry2 r-cran-covr r-cran-ellipse r-cran-gam r-cran-knitr r-cran-mlbench r-cran-party r-cran-pls r-cran-randomforest r-cran-rann r-cran-rmarkdown r-cran-callr r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-png r-cran-jpeg r-cran-viridis r-cran-bench r-cran-desc r-cran-lobstr r-cran-bit64 r-cran-bit r-cran-curl r-cran-r.utils r-cran-xts r-cran-nanotime r-cran-zoo r-cran-yaml r-cran-unitizer r-cran-r.rsp r-cran-markdown r-cran-crayon r-cran-dbi r-cran-forcats r-cran-rsqlite r-cran-waldo r-cran-tinytest r-cran-profvis r-cran-th.data r-cran-magick r-cran-sf r-cran-fields r-cran-geepack r-bioc-graph r-cran-bookdown r-cran-igraph r-cran-lavasearch2 r-cran-optimx r-cran-polycor r-cran-rgl r-cran-lintr r-cran-tidyverse r-cran-getopt r-cran-base64enc r-cran-r.devices r-cran-formattable r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-doparallel r-cran-itertools r-cran-pbmcapply r-cran-progress r-cran-furrr r-cran-commonmark r-cran-httr r-cran-inline r-cran-splines2 r-cran-fs r-cran-usethis r-cran-dichromat r-cran-blob r-cran-brio r-cran-evaluate r-cran-hms r-cran-pkgbuild r-cran-pkgload r-cran-jsonlite r-cran-readr r-cran-pkgdown r-cran-zeallot readline-doc sgml-base-doc snakemake-doc debhelper Recommended packages: patch less ssh-client manpages manpages-dev libc-devtools libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python-biopython-doc ncbi-blast+ python3-pygments python3-babel python3-json-pointer python3-rfc3987 python3-uritemplate python3-webcolors python3-bs4 python3-html5lib python3-invoke python3-olefile isympy-common r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-earth r-cran-mda r-cran-mlmetrics r-cran-fastica r-cran-kernlab r-cran-themis r-cran-mockery r-cran-decor r-cran-knitr r-cran-brio r-cran-progress r-cran-bench r-cran-broom r-cran-callr r-cran-covr r-cran-dbi r-cran-dbplyr r-cran-lobstr r-cran-rmarkdown r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-pkgload r-cran-ragg r-cran-hexbin r-cran-hmisc r-cran-interp r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-crayon r-cran-devtools r-cran-modeldata r-cran-roxygen2 r-cran-usethis r-cran-mlbench r-cran-lme4 r-cran-mets r-cran-runit r-cran-domc r-cran-abind r-cran-logcondens r-cran-cba r-cran-ddalpha r-cran-dimred r-cran-pls r-cran-rcpproll r-cran-rsample r-cran-rspectra r-cran-igraph r-cran-rann r-cran-bit64 r-cran-hms r-cran-setrng r-cran-htmltools r-cran-htmlwidgets r-cran-mockr r-cran-formattable r-cran-waldo cwltool imagemagick python3-yappi python3-dropbox python3-flask python3-ftputil python3-irodsclient python3-kubernetes libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cpp cpp-12 docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 gir1.2-glib-2.0 git git-man libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libcurl4 libdatrie1 libdeflate0 liberror-perl libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu72 libimagequant0 libisl23 libitm1 libjbig0 libjpeg62-turbo libjs-angularjs libjs-bootstrap libjs-d3 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 libmd0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsodium23 libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxt6 libyaml-0-2 linux-libc-dev littler media-types openssl python-matplotlib-data python3 python3-adal python3-aiohttp python3-aiosignal python3-all python3-all-dev python3-appdirs python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-beniget python3-biopython python3-blinker python3-boto3 python3-botocore python3-brotli python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-colorama python3-configargparse python3-connection-pool python3-cryptography python3-cycler python3-dateutil python3-datrie python3-decorator python3-dev python3-distutils python3-docutils python3-fastjsonschema python3-fonttools python3-frozenlist python3-fs python3-gast python3-gi python3-git python3-gitdb python3-idna python3-isodate python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-markupsafe python3-marshmallow python3-matplotlib python3-minimal python3-mpmath python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-nbformat python3-numpy python3-oauthlib python3-packaging python3-paramiko python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-portalocker python3-psutil python3-pulp python3-pyparsing python3-pyrsistent python3-pythran python3-ratelimiter python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-requests-oauthlib python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-scipy python3-six python3-smart-open python3-smmap python3-stopit python3-strictyaml python3-sympy python3-tabulate python3-tk python3-toposort python3-tqdm python3-traitlets python3-typing-extensions python3-tz python3-uamqp python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wrapt python3-yaml python3-yarl python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-minimal qcumber r-base-core r-bioc-biocgenerics r-bioc-savr r-cran-caret r-cran-class r-cran-cli r-cran-codetools r-cran-colorspace r-cran-conquer r-cran-cpp11 r-cran-data.table r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-foreach r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-ipred r-cran-isoband r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lava r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-modelmetrics r-cran-munsell r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proc r-cran-prodlim r-cran-progressr r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-recipes r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-scales r-cran-sparsem r-cran-squarem r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml readline-common rpcsvc-proto sensible-utils sgml-base snakemake tk8.6-blt2.5 ucf unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zip zlib1g-dev 0 upgraded, 381 newly installed, 0 to remove and 0 not upgraded. Need to get 330 MB of archives. After this operation, 1975 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.7-1 [2008 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-minimal amd64 3.10.8-3 [784 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3.10-minimal amd64 3.10.8-3 [1951 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.10.6-1 [38.7 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 media-types all 8.0.0 [33.4 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.3+20220423-2 [133 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-1 [32.2 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-1 [78.6 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-1 [15.7 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-1 [331 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-1 [134 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.2 [68.5 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.2 [165 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.0-1 [838 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-stdlib amd64 3.10.8-3 [1685 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 python3.10 amd64 3.10.8-3 [506 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.10.6-1 [21.7 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.10.6-1 [38.2 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.0-3 [812 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.0-3 [2064 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.7-1 [1400 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20211016 [156 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043 [74.0 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.39-8 [2330 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.39-8 [548 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.39-8 [153 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.39-8 [89.8 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.39-8 [812 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.39-8 [2177 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.39-8 [64.1 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-1 [1035 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b5 [279 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.38-2 [290 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-3 [420 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.1 [573 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-6 [6374 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.13.1-4.5 [281 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.13.1-4.5 [351 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-1 [117 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.1-2 [308 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.1-2 [772 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-1 [780 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.10.1-2 [156 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-9 [145 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-9 [792 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-2 [6495 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.10.1-2 [2202 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 coinor-libcoinutils3v5 amd64 2.11.4+repack1-2 [440 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 coinor-libosi1v5 amd64 0.108.6+repack1-2 [276 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 coinor-libclp1 amd64 1.17.6-3 [843 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 coinor-libcgl1 amd64 0.60.3+repack1-4 [409 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 coinor-libcbc3 amd64 2.10.8+ds1-1 [715 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 coinor-cbc amd64 2.10.8+ds1-1 [14.8 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1 [690 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.1.0-3 [2012 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.2.1-2 [44.6 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-9 [9769 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-1 [20.0 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 docutils-common all 0.17.1+dfsg-3 [113 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.13.1-4.5 [417 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.6.1-1 [206 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-9 [41.7 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-9 [116 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-9 [26.1 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-9 [9328 B] Get:89 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-9 [2193 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-9 [969 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-9 [2197 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-9 [883 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-9 [2436 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-9 [19.3 MB] Get:95 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-1 [5192 B] Get:96 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-6 [43.1 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.0.10-1 [1688 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-1 [118 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-6 [1897 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-9 [2047 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-9 [10.7 MB] Get:105 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-1 [1636 B] Get:106 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.2-1 [1394 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libgirepository-1.0-1 amd64 1.74.0-2 [112 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 gir1.2-glib-2.0 amd64 1.74.0-2 [170 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-2+b1 [183 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.50.0-1+b1 [73.1 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.86.0-2 [359 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 git-man all 1:2.35.1-1 [1916 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 git amd64 1:2.35.1-1 [5796 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0-17+b2 [9511 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:122 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-6 [587 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.86.0-2 [364 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 5.2.0-2+b1 [1886 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.2-1+b1 [169 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 libjs-angularjs all 1.8.2-2 [817 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 libjs-bootstrap all 3.4.1+dfsg-2 [173 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-2 [116 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 4.5.0-4 [142 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-11 [28.6 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.13.1-1+b1 [153 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-2 [38.4 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-2 [4851 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-2 [50.8 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1 [189 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.10+ds-1 [239 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.10+ds-1 [75.4 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.10+ds-1 [62.4 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 libpython3.10 amd64 3.10.8-3 [1753 kB] Get:160 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-4.1 [193 kB] Get:161 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-dev amd64 3.10.8-3 [4127 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.10.6-1 [22.0 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.10.6-1 [1068 B] Get:164 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.0-3 [1712 kB] Get:165 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get:166 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4 [11.0 kB] Get:167 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 libsodium23 amd64 1.0.18-1 [161 kB] Get:169 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.2-2+b2 [280 kB] Get:170 http://deb.debian.org/debian bookworm/main amd64 libtiff5 amd64 4.4.0-6 [302 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.2-2+b2 [96.3 kB] Get:172 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.2-2+b2 [106 kB] Get:173 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b2 [687 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:175 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:176 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1 [189 kB] Get:177 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:178 http://deb.debian.org/debian bookworm/main amd64 zip amd64 3.0-12 [232 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-27 [172 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:181 http://deb.debian.org/debian bookworm/main amd64 r-base-core amd64 4.2.2.20221110-1 [26.0 MB] Get:182 http://deb.debian.org/debian bookworm/main amd64 r-cran-littler amd64 0.3.17-1 [96.3 kB] Get:183 http://deb.debian.org/debian bookworm/main amd64 littler all 0.3.17-1 [14.4 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.5.2-4 [2725 kB] Get:185 http://deb.debian.org/debian bookworm/main amd64 python3-cffi-backend amd64 1.15.1-3+b1 [94.5 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 python3-cryptography amd64 3.4.8-2 [233 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:188 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-1 [78.2 kB] Get:189 http://deb.debian.org/debian bookworm/main amd64 python3-jwt all 2.4.0-2 [24.4 kB] Get:190 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get:191 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get:192 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1 [39.4 kB] Get:193 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get:194 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 65.5.0-1 [278 kB] Get:195 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 4.0.0-2 [99.1 kB] Get:196 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get:197 http://deb.debian.org/debian bookworm/main amd64 python3-adal all 1.2.7-2 [32.1 kB] Get:198 http://deb.debian.org/debian bookworm/main amd64 python3-multidict amd64 6.0.2-1+b1 [35.6 kB] Get:199 http://deb.debian.org/debian bookworm/main amd64 python3-yarl amd64 1.8.1-1+b1 [66.0 kB] Get:200 http://deb.debian.org/debian bookworm/main amd64 python3-typing-extensions all 4.3.0-2 [43.2 kB] Get:201 http://deb.debian.org/debian bookworm/main amd64 python3-async-timeout all 4.0.2-1 [7476 B] Get:202 http://deb.debian.org/debian bookworm/main amd64 python3-frozenlist amd64 1.3.3-1 [38.8 kB] Get:203 http://deb.debian.org/debian bookworm/main amd64 python3-aiosignal all 1.3.1-1 [6016 B] Get:204 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.1.0-1 [64.1 kB] Get:205 http://deb.debian.org/debian bookworm/main amd64 python3-aiohttp amd64 3.8.3-1+b1 [311 kB] Get:206 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.10.8-1 [77.3 kB] Get:207 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.10.8-1 [139 kB] Get:208 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.10.6-1 [1060 B] Get:209 http://deb.debian.org/debian bookworm/main amd64 python3.10-dev amd64 3.10.8-3 [508 kB] Get:210 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.10.6-1 [25.4 kB] Get:211 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.10.6-1 [1068 B] Get:212 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:213 http://deb.debian.org/debian bookworm/main amd64 python3-avro all 1.11.1+dfsg-1 [70.9 kB] Get:214 http://deb.debian.org/debian bookworm/main amd64 python3-isodate all 0.6.1-1 [25.3 kB] Get:215 http://deb.debian.org/debian bookworm/main amd64 python3-blinker all 1.5-1 [14.7 kB] Get:216 http://deb.debian.org/debian bookworm/main amd64 python3-oauthlib all 3.2.1-2 [95.2 kB] Get:217 http://deb.debian.org/debian bookworm/main amd64 python3-requests-oauthlib all 1.3.0+ds-0.1 [20.9 kB] Get:218 http://deb.debian.org/debian bookworm/main amd64 python3-msrest all 0.6.21-2 [48.0 kB] Get:219 http://deb.debian.org/debian bookworm/main amd64 python3-msrestazure all 0.6.4-2 [26.4 kB] Get:220 http://deb.debian.org/debian bookworm/main amd64 python3-azure-storage all 20221101+git-1 [280 kB] Get:221 http://deb.debian.org/debian bookworm/main amd64 python3-colorama all 0.4.5-3 [28.5 kB] Get:222 http://deb.debian.org/debian bookworm/main amd64 python3-pyrsistent amd64 0.18.1-1+b2 [60.9 kB] Get:223 http://deb.debian.org/debian bookworm/main amd64 python3-jsonschema all 4.7.2-3 [68.5 kB] Get:224 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.7-3 [136 kB] Get:225 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 21.3-1.1 [34.2 kB] Get:226 http://deb.debian.org/debian bookworm/main amd64 python3-marshmallow all 3.18.0-1 [66.3 kB] Get:227 http://deb.debian.org/debian bookworm/main amd64 python3-msal all 1.20.0-1 [85.6 kB] Get:228 http://deb.debian.org/debian bookworm/main amd64 python3-gi amd64 3.42.2-3 [233 kB] Get:229 http://deb.debian.org/debian bookworm/main amd64 python3-portalocker all 2.2.1-1 [18.5 kB] Get:230 http://deb.debian.org/debian bookworm/main amd64 python3-msal-extensions all 1.0.0-2 [16.9 kB] Get:231 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml.clib amd64 0.2.7-1+b1 [154 kB] Get:232 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml all 0.17.16-1 [102 kB] Get:233 http://deb.debian.org/debian bookworm/main amd64 python3-strictyaml all 1.6.1-2 [92.9 kB] Get:234 http://deb.debian.org/debian bookworm/main amd64 python3-tqdm all 4.64.0-2 [96.0 kB] Get:235 http://deb.debian.org/debian bookworm/main amd64 python3-uamqp amd64 1.5.3-1+b3 [819 kB] Get:236 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b1 [159 kB] Get:237 http://deb.debian.org/debian bookworm/main amd64 python3-azure all 20221101+git-1 [13.3 MB] Get:238 http://deb.debian.org/debian bookworm/main amd64 python3-bcrypt amd64 3.2.0-1+b2 [33.5 kB] Get:239 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:240 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-2 [9808 B] Get:241 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.0-3 [559 kB] Get:242 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.21.5-2 [3845 kB] Get:243 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.11-1+b1 [79.6 kB] Get:244 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.11-1+b1 [40.6 kB] Get:245 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.10.8-1 [106 kB] Get:246 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.2.0-1.1+b1 [72.6 kB] Get:247 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.2.0-1.1+b1 [468 kB] Get:248 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.11-1 [566 kB] Get:249 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:250 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-1 [1601 kB] Get:251 http://deb.debian.org/debian bookworm/main amd64 python3-jmespath all 1.0.1-1 [21.1 kB] Get:252 http://deb.debian.org/debian bookworm/main amd64 python3-botocore all 1.26.8+repack-1 [4865 kB] Get:253 http://deb.debian.org/debian bookworm/main amd64 python3-s3transfer all 0.6.0-1 [53.0 kB] Get:254 http://deb.debian.org/debian bookworm/main amd64 python3-boto3 all 1.23.8+dfsg-1 [155 kB] Get:255 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b5 [281 kB] Get:256 http://deb.debian.org/debian bookworm/main amd64 python3-configargparse all 1.5.3-1 [26.1 kB] Get:257 http://deb.debian.org/debian bookworm/main amd64 python3-connection-pool all 0.0.3-2 [5584 B] Get:258 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:259 http://deb.debian.org/debian bookworm/main amd64 python3-datrie amd64 0.8.2-3+b1 [155 kB] Get:260 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-2 [16.5 kB] Get:261 http://deb.debian.org/debian bookworm/main amd64 python3-roman all 3.3-2 [9808 B] Get:262 http://deb.debian.org/debian bookworm/main amd64 python3-docutils all 0.17.1+dfsg-3 [380 kB] Get:263 http://deb.debian.org/debian bookworm/main amd64 python3-fastjsonschema all 2.15.1-3 [18.9 kB] Get:264 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:265 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:266 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.8.1-14+b1 [17.2 MB] Get:267 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.13.1+dfsg1-1 [32.0 kB] Get:268 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:269 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get:270 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.6-1 [31.8 kB] Get:271 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get:272 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.1-1+b2 [1728 kB] Get:273 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b1 [25.4 kB] Get:274 http://deb.debian.org/debian bookworm/main amd64 python3-unicodedata2 amd64 14.0.0+ds2-1+b1 [301 kB] Get:275 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get:276 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.37.4-1+b1 [1096 kB] Get:277 http://deb.debian.org/debian bookworm/main amd64 python3-smmap all 5.0.0-1 [21.0 kB] Get:278 http://deb.debian.org/debian bookworm/main amd64 python3-gitdb all 4.0.9-2 [45.7 kB] Get:279 http://deb.debian.org/debian bookworm/main amd64 python3-git all 3.1.27-1 [133 kB] Get:280 http://deb.debian.org/debian bookworm/main amd64 python3-markupsafe amd64 2.1.1-1+b1 [13.7 kB] Get:281 http://deb.debian.org/debian bookworm/main amd64 python3-jinja2 all 3.0.3-2 [121 kB] Get:282 http://deb.debian.org/debian bookworm/main amd64 python3-traitlets all 5.5.0-1 [92.4 kB] Get:283 http://deb.debian.org/debian bookworm/main amd64 python3-jupyter-core all 4.11.2-1 [26.7 kB] Get:284 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.3.2-1+b3 [56.9 kB] Get:285 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.5.2-4 [7410 kB] Get:286 http://deb.debian.org/debian bookworm/main amd64 python3-nacl amd64 1.5.0-2 [59.3 kB] Get:287 http://deb.debian.org/debian bookworm/main amd64 python3-nbformat all 5.5.0-1 [43.2 kB] Get:288 http://deb.debian.org/debian bookworm/main amd64 python3-paramiko all 2.10.4-1 [135 kB] Get:289 http://deb.debian.org/debian bookworm/main amd64 python3-psutil amd64 5.9.2-1+b1 [187 kB] Get:290 http://deb.debian.org/debian bookworm/main amd64 python3-pulp all 2.6.0+dfsg-1 [66.0 kB] Get:291 http://deb.debian.org/debian bookworm/main amd64 python3-ratelimiter amd64 1.2.0.post0-3 [5840 B] Get:292 http://deb.debian.org/debian bookworm/main amd64 python3-smart-open all 5.2.1-5 [87.9 kB] Get:293 http://deb.debian.org/debian bookworm/main amd64 python3-stopit all 1.1.2-2 [12.6 kB] Get:294 http://deb.debian.org/debian bookworm/main amd64 python3-tabulate all 0.8.9-1 [35.2 kB] Get:295 http://deb.debian.org/debian bookworm/main amd64 python3-toposort all 1.7-1 [7648 B] Get:296 http://deb.debian.org/debian bookworm/main amd64 python3-wrapt amd64 1.14.1-2+b1 [42.3 kB] Get:297 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocgenerics all 0.44.0-2 [600 kB] Get:298 http://deb.debian.org/debian bookworm/main amd64 r-cran-digest amd64 0.6.30-2 [183 kB] Get:299 http://deb.debian.org/debian bookworm/main amd64 r-cran-glue amd64 1.6.2-1 [152 kB] Get:300 http://deb.debian.org/debian bookworm/main amd64 r-cran-gtable all 0.3.1+dfsg-1 [165 kB] Get:301 http://deb.debian.org/debian bookworm/main amd64 r-cran-isoband amd64 0.2.6-1 [1790 kB] Get:302 http://deb.debian.org/debian bookworm/main amd64 r-cran-mass amd64 7.3-58.1-1 [1122 kB] Get:303 http://deb.debian.org/debian bookworm/main amd64 r-cran-lattice amd64 0.20-45-3 [1177 kB] Get:304 http://deb.debian.org/debian bookworm/main amd64 r-cran-nlme amd64 3.1.160-1 [2255 kB] Get:305 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrix amd64 1.5-1-1 [3762 kB] Get:306 http://deb.debian.org/debian bookworm/main amd64 r-cran-mgcv amd64 1.8-41-1 [3171 kB] Get:307 http://deb.debian.org/debian bookworm/main amd64 r-cran-rlang amd64 1.0.6-1 [1618 kB] Get:308 http://deb.debian.org/debian bookworm/main amd64 r-cran-farver amd64 2.1.1-1 [1404 kB] Get:309 http://deb.debian.org/debian bookworm/main amd64 r-cran-labeling all 0.4.2-1 [62.7 kB] Get:310 http://deb.debian.org/debian bookworm/main amd64 r-cran-cli amd64 3.4.1-1 [1245 kB] Get:311 http://deb.debian.org/debian bookworm/main amd64 r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB] Get:312 http://deb.debian.org/debian bookworm/main amd64 r-cran-colorspace amd64 2.0-3+dfsg-1 [1698 kB] Get:313 http://deb.debian.org/debian bookworm/main amd64 r-cran-munsell all 0.5.0-2 [236 kB] Get:314 http://deb.debian.org/debian bookworm/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get:315 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get:316 http://deb.debian.org/debian bookworm/main amd64 r-cran-viridislite all 0.4.1-1 [1299 kB] Get:317 http://deb.debian.org/debian bookworm/main amd64 r-cran-scales all 1.2.1-1 [614 kB] Get:318 http://deb.debian.org/debian bookworm/main amd64 r-cran-fansi amd64 1.0.3-1 [617 kB] Get:319 http://deb.debian.org/debian bookworm/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:320 http://deb.debian.org/debian bookworm/main amd64 r-cran-utf8 amd64 1.2.2-1 [133 kB] Get:321 http://deb.debian.org/debian bookworm/main amd64 r-cran-vctrs amd64 0.5.1-1 [1349 kB] Get:322 http://deb.debian.org/debian bookworm/main amd64 r-cran-pillar all 1.8.1+dfsg-1 [463 kB] Get:323 http://deb.debian.org/debian bookworm/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:324 http://deb.debian.org/debian bookworm/main amd64 r-cran-tibble amd64 3.1.8+dfsg-1 [513 kB] Get:325 http://deb.debian.org/debian bookworm/main amd64 r-cran-withr all 2.5.0-1 [236 kB] Get:326 http://deb.debian.org/debian bookworm/main amd64 r-cran-ggplot2 all 3.3.6+dfsg-1 [3213 kB] Get:327 http://deb.debian.org/debian bookworm/main amd64 r-cran-pkgkitten all 0.2.2-2 [27.0 kB] Get:328 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcpp amd64 1.0.9-1 [2078 kB] Get:329 http://deb.debian.org/debian bookworm/main amd64 r-cran-plyr amd64 1.8.8-1 [832 kB] Get:330 http://deb.debian.org/debian bookworm/main amd64 r-cran-stringi amd64 1.7.8-1+b1 [861 kB] Get:331 http://deb.debian.org/debian bookworm/main amd64 r-cran-stringr all 1.4.1-1 [202 kB] Get:332 http://deb.debian.org/debian bookworm/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get:333 http://deb.debian.org/debian bookworm/main amd64 r-cran-gridextra all 2.3-3 [1024 kB] Get:334 http://deb.debian.org/debian bookworm/main amd64 r-cran-xml amd64 3.99-0.12-1 [1716 kB] Get:335 http://deb.debian.org/debian bookworm/main amd64 r-bioc-savr all 1.36.0-2 [608 kB] Get:336 http://deb.debian.org/debian bookworm/main amd64 r-cran-sparsem amd64 1.81-1 [905 kB] Get:337 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrixmodels all 0.5-1-1 [375 kB] Get:338 http://deb.debian.org/debian bookworm/main amd64 r-cran-survival amd64 3.4-0-1 [5803 kB] Get:339 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrixstats amd64 0.63.0-1 [470 kB] Get:340 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcpparmadillo amd64 0.11.4.2.1-1 [849 kB] Get:341 http://deb.debian.org/debian bookworm/main amd64 r-cran-class amd64 7.3-20-1 [87.8 kB] Get:342 http://deb.debian.org/debian bookworm/main amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] Get:343 http://deb.debian.org/debian bookworm/main amd64 r-cran-e1071 amd64 1.7-12-1 [555 kB] Get:344 http://deb.debian.org/debian bookworm/main amd64 r-cran-codetools all 0.2-18-1 [91.8 kB] Get:345 http://deb.debian.org/debian bookworm/main amd64 r-cran-iterators all 1.0.14-1 [337 kB] Get:346 http://deb.debian.org/debian bookworm/main amd64 r-cran-foreach all 1.5.2-1 [122 kB] Get:347 http://deb.debian.org/debian bookworm/main amd64 r-cran-data.table amd64 1.14.6+dfsg-1 [1711 kB] Get:348 http://deb.debian.org/debian bookworm/main amd64 r-cran-modelmetrics amd64 1.2.2.2-1+b1 [125 kB] Get:349 http://deb.debian.org/debian bookworm/main amd64 r-cran-proc amd64 1.18.0-1+b1 [983 kB] Get:350 http://deb.debian.org/debian bookworm/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get:351 http://deb.debian.org/debian bookworm/main amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [219 kB] Get:352 http://deb.debian.org/debian bookworm/main amd64 r-cran-dplyr amd64 1.0.10-1 [1227 kB] Get:353 http://deb.debian.org/debian bookworm/main amd64 r-cran-ellipsis amd64 0.3.2-2 [35.1 kB] Get:354 http://deb.debian.org/debian bookworm/main amd64 r-cran-gower amd64 1.0.0-1 [157 kB] Get:355 http://deb.debian.org/debian bookworm/main amd64 r-cran-hardhat all 1.2.0+dfsg-1 [622 kB] Get:356 http://deb.debian.org/debian bookworm/main amd64 r-cran-rpart amd64 4.1.19-1 [917 kB] Get:357 http://deb.debian.org/debian bookworm/main amd64 r-cran-nnet amd64 7.3-18-1 [112 kB] Get:358 http://deb.debian.org/debian bookworm/main amd64 r-cran-kernsmooth amd64 2.23-20-1 [91.5 kB] Get:359 http://deb.debian.org/debian bookworm/main amd64 r-cran-globals all 0.16.2-1 [118 kB] Get:360 http://deb.debian.org/debian bookworm/main amd64 r-cran-listenv all 0.8.0+dfsg-1 [105 kB] Get:361 http://deb.debian.org/debian bookworm/main amd64 r-cran-parallelly all 1.32.1-1 [314 kB] Get:362 http://deb.debian.org/debian bookworm/main amd64 r-cran-future all 1.29.0+dfsg-1 [634 kB] Get:363 http://deb.debian.org/debian bookworm/main amd64 r-cran-future.apply all 1.10.0+dfsg-1 [165 kB] Get:364 http://deb.debian.org/debian bookworm/main amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] Get:365 http://deb.debian.org/debian bookworm/main amd64 r-cran-progressr all 0.11.0-1 [273 kB] Get:366 http://deb.debian.org/debian bookworm/main amd64 r-cran-squarem all 2021.1-1 [179 kB] Get:367 http://deb.debian.org/debian bookworm/main amd64 r-cran-lava all 1.7.0+dfsg-1 [2204 kB] Get:368 http://deb.debian.org/debian bookworm/main amd64 r-cran-prodlim amd64 2019.11.13-1+b1 [395 kB] Get:369 http://deb.debian.org/debian bookworm/main amd64 r-cran-ipred amd64 0.9-13-1 [386 kB] Get:370 http://deb.debian.org/debian bookworm/main amd64 r-cran-cpp11 all 0.4.3-1 [223 kB] Get:371 http://deb.debian.org/debian bookworm/main amd64 r-cran-timechange amd64 0.1.1-3 [175 kB] Get:372 http://deb.debian.org/debian bookworm/main amd64 r-cran-lubridate amd64 1.9.0+dfsg-1 [991 kB] Get:373 http://deb.debian.org/debian bookworm/main amd64 r-cran-purrr amd64 0.3.5-1 [404 kB] Get:374 http://deb.debian.org/debian bookworm/main amd64 r-cran-tidyr amd64 1.2.1-1 [856 kB] Get:375 http://deb.debian.org/debian bookworm/main amd64 r-cran-timedate amd64 4021.106-1 [1475 kB] Get:376 http://deb.debian.org/debian bookworm/main amd64 r-cran-recipes all 1.0.2+dfsg-1 [1717 kB] Get:377 http://deb.debian.org/debian bookworm/main amd64 r-cran-caret amd64 6.0-93+dfsg-1 [3447 kB] Get:378 http://deb.debian.org/debian bookworm/main amd64 r-cran-conquer amd64 1.3.1-1 [465 kB] Get:379 http://deb.debian.org/debian bookworm/main amd64 r-cran-quantreg amd64 5.94-1 [1535 kB] Get:380 http://deb.debian.org/debian bookworm/main amd64 snakemake all 7.12.1-1 [285 kB] Get:381 http://deb.debian.org/debian bookworm/main amd64 qcumber all 2.3.0-2 [50.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 330 MB in 4s (83.9 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8597 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.7-1_amd64.deb ... Unpacking libssl3:amd64 (3.0.7-1) ... Selecting previously unselected package libpython3.10-minimal:amd64. Preparing to unpack .../libpython3.10-minimal_3.10.8-3_amd64.deb ... Unpacking libpython3.10-minimal:amd64 (3.10.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.8-3_amd64.deb ... Unpacking python3.10-minimal (3.10.8-3) ... Setting up libssl3:amd64 (3.0.7-1) ... Setting up libpython3.10-minimal:amd64 (3.10.8-3) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.10-minimal (3.10.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8914 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.10.6-1_amd64.deb ... Unpacking python3-minimal (3.10.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../02-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../03-libncursesw6_6.3+20220423-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.3+20220423-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.20.1-1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../05-libk5crypto3_1.20.1-1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../06-libkeyutils1_1.6.3-1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../07-libkrb5-3_1.20.1-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../08-libgssapi-krb5-2_1.20.1-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../09-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../10-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../11-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../12-readline-common_8.2-1.2_all.deb ... Unpacking readline-common (8.2-1.2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../13-libreadline8_8.2-1.2_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../14-libsqlite3-0_3.40.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.0-1) ... Selecting previously unselected package libpython3.10-stdlib:amd64. Preparing to unpack .../15-libpython3.10-stdlib_3.10.8-3_amd64.deb ... Unpacking libpython3.10-stdlib:amd64 (3.10.8-3) ... Selecting previously unselected package python3.10. Preparing to unpack .../16-python3.10_3.10.8-3_amd64.deb ... Unpacking python3.10 (3.10.8-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.10.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.10.6-1) ... Setting up python3-minimal (3.10.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9413 files and directories currently installed.) Preparing to unpack .../000-python3_3.10.6-1_amd64.deb ... Unpacking python3 (3.10.6-1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../001-libpython3.11-minimal_3.11.0-3_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.0-3) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../002-python3.11-minimal_3.11.0-3_amd64.deb ... Unpacking python3.11-minimal (3.11.0-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.0.7-1_amd64.deb ... Unpacking openssl (3.0.7-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package ucf. Preparing to unpack .../007-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package binutils-common:amd64. Preparing to unpack .../008-binutils-common_2.39-8_amd64.deb ... Unpacking binutils-common:amd64 (2.39-8) ... Selecting previously unselected package libbinutils:amd64. Preparing to unpack .../009-libbinutils_2.39-8_amd64.deb ... Unpacking libbinutils:amd64 (2.39-8) ... Selecting previously unselected package libctf-nobfd0:amd64. Preparing to unpack .../010-libctf-nobfd0_2.39-8_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.39-8) ... Selecting previously unselected package libctf0:amd64. Preparing to unpack .../011-libctf0_2.39-8_amd64.deb ... Unpacking libctf0:amd64 (2.39-8) ... Selecting previously unselected package libgprofng0:amd64. Preparing to unpack .../012-libgprofng0_2.39-8_amd64.deb ... Unpacking libgprofng0:amd64 (2.39-8) ... Selecting previously unselected package binutils-x86-64-linux-gnu. Preparing to unpack .../013-binutils-x86-64-linux-gnu_2.39-8_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.39-8) ... Selecting previously unselected package binutils. Preparing to unpack .../014-binutils_2.39-8_amd64.deb ... Unpacking binutils (2.39-8) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../015-libtcl8.6_8.6.13+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.13+dfsg-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../016-libbrotli1_1.0.9-2+b5_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b5) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../017-libpng16-16_1.6.38-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.38-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../018-libfreetype6_2.12.1+dfsg-3_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../019-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../020-libfontenc1_1%3a1.1.4-1_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.4-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../021-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../022-xfonts-encodings_1%3a1.0.4-2.1_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.1) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../023-xfonts-utils_1%3a7.7+6_amd64.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../024-fonts-urw-base35_20200910-6_all.deb ... Unpacking fonts-urw-base35 (20200910-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../025-fontconfig-config_2.13.1-4.5_amd64.deb ... Unpacking fontconfig-config (2.13.1-4.5) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../026-libfontconfig1_2.13.1-4.5_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.5) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../027-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../028-libmd0_1.0.4-2_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../029-libbsd0_0.11.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../030-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../031-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../032-libx11-data_2%3a1.8.1-2_all.deb ... Unpacking libx11-data (2:1.8.1-2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../033-libx11-6_2%3a1.8.1-2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.1-2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../034-libxrender1_1%3a0.9.10-1.1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../035-libxft2_2.3.6-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../036-libxext6_2%3a1.3.4-1+b1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../037-libxss1_1%3a1.2.3-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../038-libtk8.6_8.6.13-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.13-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../039-tk8.6-blt2.5_2.5.3+dfsg-4.1_amd64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Selecting previously unselected package blt. Preparing to unpack .../040-blt_2.5.3+dfsg-4.1_amd64.deb ... Unpacking blt (2.5.3+dfsg-4.1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../041-libblas3_3.10.1-2_amd64.deb ... Unpacking libblas3:amd64 (3.10.1-2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../042-libquadmath0_12.2.0-9_amd64.deb ... Unpacking libquadmath0:amd64 (12.2.0-9) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../043-libgfortran5_12.2.0-9_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-9) ... Selecting previously unselected package libopenblas0-pthread:amd64. Preparing to unpack .../044-libopenblas0-pthread_0.3.21+ds-2_amd64.deb ... Unpacking libopenblas0-pthread:amd64 (0.3.21+ds-2) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../045-liblapack3_3.10.1-2_amd64.deb ... Unpacking liblapack3:amd64 (3.10.1-2) ... Selecting previously unselected package coinor-libcoinutils3v5:amd64. Preparing to unpack .../046-coinor-libcoinutils3v5_2.11.4+repack1-2_amd64.deb ... Unpacking coinor-libcoinutils3v5:amd64 (2.11.4+repack1-2) ... Selecting previously unselected package coinor-libosi1v5:amd64. Preparing to unpack .../047-coinor-libosi1v5_0.108.6+repack1-2_amd64.deb ... Unpacking coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Selecting previously unselected package coinor-libclp1:amd64. Preparing to unpack .../048-coinor-libclp1_1.17.6-3_amd64.deb ... Unpacking coinor-libclp1:amd64 (1.17.6-3) ... Selecting previously unselected package coinor-libcgl1:amd64. Preparing to unpack .../049-coinor-libcgl1_0.60.3+repack1-4_amd64.deb ... Unpacking coinor-libcgl1:amd64 (0.60.3+repack1-4) ... Selecting previously unselected package coinor-libcbc3:amd64. Preparing to unpack .../050-coinor-libcbc3_2.10.8+ds1-1_amd64.deb ... Unpacking coinor-libcbc3:amd64 (2.10.8+ds1-1) ... Selecting previously unselected package coinor-cbc. Preparing to unpack .../051-coinor-cbc_2.10.8+ds1-1_amd64.deb ... Unpacking coinor-cbc (2.10.8+ds1-1) ... Selecting previously unselected package libisl23:amd64. Preparing to unpack .../052-libisl23_0.25-1_amd64.deb ... Unpacking libisl23:amd64 (0.25-1) ... Selecting previously unselected package libmpfr6:amd64. Preparing to unpack .../053-libmpfr6_4.1.0-3_amd64.deb ... Unpacking libmpfr6:amd64 (4.1.0-3) ... Selecting previously unselected package libmpc3:amd64. Preparing to unpack .../054-libmpc3_1.2.1-2_amd64.deb ... Unpacking libmpc3:amd64 (1.2.1-2) ... Selecting previously unselected package cpp-12. Preparing to unpack .../055-cpp-12_12.2.0-9_amd64.deb ... Unpacking cpp-12 (12.2.0-9) ... Selecting previously unselected package cpp. Preparing to unpack .../056-cpp_4%3a12.2.0-1_amd64.deb ... Unpacking cpp (4:12.2.0-1) ... Selecting previously unselected package xml-core. Preparing to unpack .../057-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package docutils-common. Preparing to unpack .../058-docutils-common_0.17.1+dfsg-3_all.deb ... Unpacking docutils-common (0.17.1+dfsg-3) ... Selecting previously unselected package fontconfig. Preparing to unpack .../059-fontconfig_2.13.1-4.5_amd64.deb ... Unpacking fontconfig (2.13.1-4.5) ... Selecting previously unselected package fonts-glyphicons-halflings. Preparing to unpack .../060-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-2_all.deb ... Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../061-fonts-lyx_2.3.6.1-1_all.deb ... Unpacking fonts-lyx (2.3.6.1-1) ... Selecting previously unselected package libcc1-0:amd64. Preparing to unpack .../062-libcc1-0_12.2.0-9_amd64.deb ... Unpacking libcc1-0:amd64 (12.2.0-9) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../063-libgomp1_12.2.0-9_amd64.deb ... Unpacking libgomp1:amd64 (12.2.0-9) ... Selecting previously unselected package libitm1:amd64. Preparing to unpack .../064-libitm1_12.2.0-9_amd64.deb ... Unpacking libitm1:amd64 (12.2.0-9) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../065-libatomic1_12.2.0-9_amd64.deb ... Unpacking libatomic1:amd64 (12.2.0-9) ... Selecting previously unselected package libasan8:amd64. Preparing to unpack .../066-libasan8_12.2.0-9_amd64.deb ... Unpacking libasan8:amd64 (12.2.0-9) ... Selecting previously unselected package liblsan0:amd64. Preparing to unpack .../067-liblsan0_12.2.0-9_amd64.deb ... Unpacking liblsan0:amd64 (12.2.0-9) ... Selecting previously unselected package libtsan2:amd64. Preparing to unpack .../068-libtsan2_12.2.0-9_amd64.deb ... Unpacking libtsan2:amd64 (12.2.0-9) ... Selecting previously unselected package libubsan1:amd64. Preparing to unpack .../069-libubsan1_12.2.0-9_amd64.deb ... Unpacking libubsan1:amd64 (12.2.0-9) ... Selecting previously unselected package libgcc-12-dev:amd64. Preparing to unpack .../070-libgcc-12-dev_12.2.0-9_amd64.deb ... Unpacking libgcc-12-dev:amd64 (12.2.0-9) ... Selecting previously unselected package gcc-12. Preparing to unpack .../071-gcc-12_12.2.0-9_amd64.deb ... Unpacking gcc-12 (12.2.0-9) ... Selecting previously unselected package gcc. Preparing to unpack .../072-gcc_4%3a12.2.0-1_amd64.deb ... Unpacking gcc (4:12.2.0-1) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack .../073-libc-dev-bin_2.36-6_amd64.deb ... Unpacking libc-dev-bin (2.36-6) ... Selecting previously unselected package linux-libc-dev:amd64. Preparing to unpack .../074-linux-libc-dev_6.0.10-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (6.0.10-1) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../075-libcrypt-dev_1%3a4.4.33-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.33-1) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../076-libtirpc-dev_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../077-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package rpcsvc-proto. Preparing to unpack .../078-rpcsvc-proto_1.4.2-4_amd64.deb ... Unpacking rpcsvc-proto (1.4.2-4) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../079-libc6-dev_2.36-6_amd64.deb ... Unpacking libc6-dev:amd64 (2.36-6) ... Selecting previously unselected package libstdc++-12-dev:amd64. Preparing to unpack .../080-libstdc++-12-dev_12.2.0-9_amd64.deb ... Unpacking libstdc++-12-dev:amd64 (12.2.0-9) ... Selecting previously unselected package g++-12. Preparing to unpack .../081-g++-12_12.2.0-9_amd64.deb ... Unpacking g++-12 (12.2.0-9) ... Selecting previously unselected package g++. Preparing to unpack .../082-g++_4%3a12.2.0-1_amd64.deb ... Unpacking g++ (4:12.2.0-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../083-libglib2.0-0_2.74.2-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.74.2-1) ... Selecting previously unselected package libgirepository-1.0-1:amd64. Preparing to unpack .../084-libgirepository-1.0-1_1.74.0-2_amd64.deb ... Unpacking libgirepository-1.0-1:amd64 (1.74.0-2) ... Selecting previously unselected package gir1.2-glib-2.0:amd64. Preparing to unpack .../085-gir1.2-glib-2.0_1.74.0-2_amd64.deb ... Unpacking gir1.2-glib-2.0:amd64 (1.74.0-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../086-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../087-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../088-libldap-2.5-0_2.5.13+dfsg-2+b1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-2+b1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../089-libnghttp2-14_1.50.0-1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.50.0-1+b1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../090-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../091-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../092-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../093-libcurl3-gnutls_7.86.0-2_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.86.0-2) ... Selecting previously unselected package liberror-perl. Preparing to unpack .../094-liberror-perl_0.17029-2_all.deb ... Unpacking liberror-perl (0.17029-2) ... Selecting previously unselected package git-man. Preparing to unpack .../095-git-man_1%3a2.35.1-1_all.deb ... Unpacking git-man (1:2.35.1-1) ... Selecting previously unselected package git. Preparing to unpack .../096-git_1%3a2.35.1-1_amd64.deb ... Unpacking git (1:2.35.1-1) ... Selecting previously unselected package libboost1.74-dev:amd64. Preparing to unpack .../097-libboost1.74-dev_1.74.0-17+b2_amd64.deb ... Unpacking libboost1.74-dev:amd64 (1.74.0-17+b2) ... Selecting previously unselected package libboost-dev:amd64. Preparing to unpack .../098-libboost-dev_1.74.0.3_amd64.deb ... Unpacking libboost-dev:amd64 (1.74.0.3) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../099-libpixman-1-0_0.42.2-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.42.2-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../100-libxcb-render0_1.15-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.15-1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../101-libxcb-shm0_1.15-1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.15-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../102-libcairo2_1.16.0-6_amd64.deb ... Unpacking libcairo2:amd64 (1.16.0-6) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../103-libcurl4_7.86.0-2_amd64.deb ... Unpacking libcurl4:amd64 (7.86.0-2) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../104-libdatrie1_0.2.13-2+b1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.13-2+b1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../105-libdeflate0_1.14-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.14-1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../106-libexpat1-dev_2.5.0-1_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.5.0-1) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../107-libfribidi0_1.0.8-2.1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.8-2.1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../108-libgraphite2-3_1.3.14-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../109-libharfbuzz0b_5.2.0-2+b1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (5.2.0-2+b1) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../110-libice6_2%3a1.0.10-1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.10-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../111-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../112-libimagequant0_2.17.0-1_amd64.deb ... Unpacking libimagequant0:amd64 (2.17.0-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../113-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../114-libjpeg62-turbo_1%3a2.1.2-1+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Selecting previously unselected package libjs-angularjs. Preparing to unpack .../115-libjs-angularjs_1.8.2-2_all.deb ... Unpacking libjs-angularjs (1.8.2-2) ... Selecting previously unselected package libjs-bootstrap. Preparing to unpack .../116-libjs-bootstrap_3.4.1+dfsg-2_all.deb ... Unpacking libjs-bootstrap (3.4.1+dfsg-2) ... Selecting previously unselected package libjs-d3. Preparing to unpack .../117-libjs-d3_3.5.17-4_all.deb ... Unpacking libjs-d3 (3.5.17-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../118-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../119-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../120-libjs-underscore_1.13.4~dfsg+~1.11.4-2_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-2) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../121-libjs-sphinxdoc_4.5.0-4_all.deb ... Unpacking libjs-sphinxdoc (4.5.0-4) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../122-liblbfgsb0_3.0+dfsg.3-11_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../123-liblcms2-2_2.13.1-1+b1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.13.1-1+b1) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../124-liblerc4_4.0.0+ds-2_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-2) ... Selecting previously unselected package libopenblas0:amd64. Preparing to unpack .../125-libopenblas0_0.3.21+ds-2_amd64.deb ... Unpacking libopenblas0:amd64 (0.3.21+ds-2) ... Selecting previously unselected package libopenblas-pthread-dev:amd64. Preparing to unpack .../126-libopenblas-pthread-dev_0.3.21+ds-2_amd64.deb ... Unpacking libopenblas-pthread-dev:amd64 (0.3.21+ds-2) ... Selecting previously unselected package libopenblas-dev:amd64. Preparing to unpack .../127-libopenblas-dev_0.3.21+ds-2_amd64.deb ... Unpacking libopenblas-dev:amd64 (0.3.21+ds-2) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../128-libopenjp2-7_2.5.0-1_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.0-1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../129-libthai-data_0.1.29-1_all.deb ... Unpacking libthai-data (0.1.29-1) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../130-libthai0_0.1.29-1_amd64.deb ... Unpacking libthai0:amd64 (0.1.29-1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../131-libpango-1.0-0_1.50.10+ds-1_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.50.10+ds-1) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../132-libpangoft2-1.0-0_1.50.10+ds-1_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.50.10+ds-1) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../133-libpangocairo-1.0-0_1.50.10+ds-1_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.50.10+ds-1) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../134-libpaper1_1.1.28+b1_amd64.deb ... Unpacking libpaper1:amd64 (1.1.28+b1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../135-libpaper-utils_1.1.28+b1_amd64.deb ... Unpacking libpaper-utils (1.1.28+b1) ... Selecting previously unselected package libpython3.10:amd64. Preparing to unpack .../136-libpython3.10_3.10.8-3_amd64.deb ... Unpacking libpython3.10:amd64 (3.10.8-3) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../137-zlib1g-dev_1%3a1.2.11.dfsg-4.1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-4.1) ... Selecting previously unselected package libpython3.10-dev:amd64. Preparing to unpack .../138-libpython3.10-dev_3.10.8-3_amd64.deb ... Unpacking libpython3.10-dev:amd64 (3.10.8-3) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../139-libpython3-dev_3.10.6-1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.10.6-1) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../140-libpython3-all-dev_3.10.6-1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.10.6-1) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../141-libpython3.11-stdlib_3.11.0-3_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.0-3) ... Selecting previously unselected package libqhull-r8.0:amd64. Preparing to unpack .../142-libqhull-r8.0_2020.2-5_amd64.deb ... Unpacking libqhull-r8.0:amd64 (2020.2-5) ... Selecting previously unselected package libraqm0:amd64. Preparing to unpack .../143-libraqm0_0.7.0-4_amd64.deb ... Unpacking libraqm0:amd64 (0.7.0-4) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../144-libsm6_2%3a1.2.3-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.3-1) ... Selecting previously unselected package libsodium23:amd64. Preparing to unpack .../145-libsodium23_1.0.18-1_amd64.deb ... Unpacking libsodium23:amd64 (1.0.18-1) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../146-libwebp7_1.2.2-2+b2_amd64.deb ... Unpacking libwebp7:amd64 (1.2.2-2+b2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../147-libtiff5_4.4.0-6_amd64.deb ... Unpacking libtiff5:amd64 (4.4.0-6) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../148-libwebpdemux2_1.2.2-2+b2_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.2.2-2+b2) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../149-libwebpmux3_1.2.2-2+b2_amd64.deb ... Unpacking libwebpmux3:amd64 (1.2.2-2+b2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../150-libxml2_2.9.14+dfsg-1.1+b2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Selecting previously unselected package libxsimd-dev:amd64. Preparing to unpack .../151-libxsimd-dev_8.1.0-7_amd64.deb ... Unpacking libxsimd-dev:amd64 (8.1.0-7) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../152-libxslt1.1_1.1.35-1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.35-1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../153-libxt6_1%3a1.2.1-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.2.1-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../154-libyaml-0-2_0.2.5-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-1) ... Selecting previously unselected package zip. Preparing to unpack .../155-zip_3.0-12_amd64.deb ... Unpacking zip (3.0-12) ... Selecting previously unselected package unzip. Preparing to unpack .../156-unzip_6.0-27_amd64.deb ... Unpacking unzip (6.0-27) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../157-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../158-r-base-core_4.2.2.20221110-1_amd64.deb ... Unpacking r-base-core (4.2.2.20221110-1) ... Selecting previously unselected package r-cran-littler. Preparing to unpack .../159-r-cran-littler_0.3.17-1_amd64.deb ... Unpacking r-cran-littler (0.3.17-1) ... Selecting previously unselected package littler. Preparing to unpack .../160-littler_0.3.17-1_all.deb ... Unpacking littler (0.3.17-1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../161-python-matplotlib-data_3.5.2-4_all.deb ... Unpacking python-matplotlib-data (3.5.2-4) ... Selecting previously unselected package python3-cffi-backend:amd64. Preparing to unpack .../162-python3-cffi-backend_1.15.1-3+b1_amd64.deb ... Unpacking python3-cffi-backend:amd64 (1.15.1-3+b1) ... Selecting previously unselected package python3-cryptography. Preparing to unpack .../163-python3-cryptography_3.4.8-2_amd64.deb ... Unpacking python3-cryptography (3.4.8-2) ... Selecting previously unselected package python3-six. Preparing to unpack .../164-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../165-python3-dateutil_2.8.2-1_all.deb ... Unpacking python3-dateutil (2.8.2-1) ... Selecting previously unselected package python3-jwt. Preparing to unpack .../166-python3-jwt_2.4.0-2_all.deb ... Unpacking python3-jwt (2.4.0-2) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../167-python3-certifi_2022.9.24-1_all.deb ... Unpacking python3-certifi (2022.9.24-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../168-python3-charset-normalizer_3.0.1-2_all.deb ... Unpacking python3-charset-normalizer (3.0.1-2) ... Selecting previously unselected package python3-idna. Preparing to unpack .../169-python3-idna_3.3-1_all.deb ... Unpacking python3-idna (3.3-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../170-python3-urllib3_1.26.12-1_all.deb ... Unpacking python3-urllib3 (1.26.12-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../171-python3-pkg-resources_65.5.0-1_all.deb ... Unpacking python3-pkg-resources (65.5.0-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../172-python3-chardet_4.0.0-2_all.deb ... Unpacking python3-chardet (4.0.0-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../173-python3-requests_2.28.1+dfsg-1_all.deb ... Unpacking python3-requests (2.28.1+dfsg-1) ... Selecting previously unselected package python3-adal. Preparing to unpack .../174-python3-adal_1.2.7-2_all.deb ... Unpacking python3-adal (1.2.7-2) ... Selecting previously unselected package python3-multidict. Preparing to unpack .../175-python3-multidict_6.0.2-1+b1_amd64.deb ... Unpacking python3-multidict (6.0.2-1+b1) ... Selecting previously unselected package python3-yarl. Preparing to unpack .../176-python3-yarl_1.8.1-1+b1_amd64.deb ... Unpacking python3-yarl (1.8.1-1+b1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../177-python3-typing-extensions_4.3.0-2_all.deb ... Unpacking python3-typing-extensions (4.3.0-2) ... Selecting previously unselected package python3-async-timeout. Preparing to unpack .../178-python3-async-timeout_4.0.2-1_all.deb ... Unpacking python3-async-timeout (4.0.2-1) ... Selecting previously unselected package python3-frozenlist. Preparing to unpack .../179-python3-frozenlist_1.3.3-1_amd64.deb ... Unpacking python3-frozenlist (1.3.3-1) ... Selecting previously unselected package python3-aiosignal. Preparing to unpack .../180-python3-aiosignal_1.3.1-1_all.deb ... Unpacking python3-aiosignal (1.3.1-1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../181-python3-attr_22.1.0-1_all.deb ... Unpacking python3-attr (22.1.0-1) ... Selecting previously unselected package python3-aiohttp. Preparing to unpack .../182-python3-aiohttp_3.8.3-1+b1_amd64.deb ... Unpacking python3-aiohttp (3.8.3-1+b1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../183-python3-lib2to3_3.10.8-1_all.deb ... Unpacking python3-lib2to3 (3.10.8-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../184-python3-distutils_3.10.8-1_all.deb ... Unpacking python3-distutils (3.10.8-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../185-python3-all_3.10.6-1_amd64.deb ... Unpacking python3-all (3.10.6-1) ... Selecting previously unselected package python3.10-dev. Preparing to unpack .../186-python3.10-dev_3.10.8-3_amd64.deb ... Unpacking python3.10-dev (3.10.8-3) ... Selecting previously unselected package python3-dev. Preparing to unpack .../187-python3-dev_3.10.6-1_amd64.deb ... Unpacking python3-dev (3.10.6-1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../188-python3-all-dev_3.10.6-1_amd64.deb ... Unpacking python3-all-dev (3.10.6-1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../189-python3-appdirs_1.4.4-3_all.deb ... Unpacking python3-appdirs (1.4.4-3) ... Selecting previously unselected package python3-avro. Preparing to unpack .../190-python3-avro_1.11.1+dfsg-1_all.deb ... Unpacking python3-avro (1.11.1+dfsg-1) ... Selecting previously unselected package python3-isodate. Preparing to unpack .../191-python3-isodate_0.6.1-1_all.deb ... Unpacking python3-isodate (0.6.1-1) ... Selecting previously unselected package python3-blinker. Preparing to unpack .../192-python3-blinker_1.5-1_all.deb ... Unpacking python3-blinker (1.5-1) ... Selecting previously unselected package python3-oauthlib. Preparing to unpack .../193-python3-oauthlib_3.2.1-2_all.deb ... Unpacking python3-oauthlib (3.2.1-2) ... Selecting previously unselected package python3-requests-oauthlib. Preparing to unpack .../194-python3-requests-oauthlib_1.3.0+ds-0.1_all.deb ... Unpacking python3-requests-oauthlib (1.3.0+ds-0.1) ... Selecting previously unselected package python3-msrest. Preparing to unpack .../195-python3-msrest_0.6.21-2_all.deb ... Unpacking python3-msrest (0.6.21-2) ... Selecting previously unselected package python3-msrestazure. Preparing to unpack .../196-python3-msrestazure_0.6.4-2_all.deb ... Unpacking python3-msrestazure (0.6.4-2) ... Selecting previously unselected package python3-azure-storage. Preparing to unpack .../197-python3-azure-storage_20221101+git-1_all.deb ... Unpacking python3-azure-storage (20221101+git-1) ... Selecting previously unselected package python3-colorama. Preparing to unpack .../198-python3-colorama_0.4.5-3_all.deb ... Unpacking python3-colorama (0.4.5-3) ... Selecting previously unselected package python3-pyrsistent:amd64. Preparing to unpack .../199-python3-pyrsistent_0.18.1-1+b2_amd64.deb ... Unpacking python3-pyrsistent:amd64 (0.18.1-1+b2) ... Selecting previously unselected package python3-jsonschema. Preparing to unpack .../200-python3-jsonschema_4.7.2-3_all.deb ... Unpacking python3-jsonschema (4.7.2-3) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../201-python3-pyparsing_3.0.7-3_all.deb ... Unpacking python3-pyparsing (3.0.7-3) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../202-python3-packaging_21.3-1.1_all.deb ... Unpacking python3-packaging (21.3-1.1) ... Selecting previously unselected package python3-marshmallow. Preparing to unpack .../203-python3-marshmallow_3.18.0-1_all.deb ... Unpacking python3-marshmallow (3.18.0-1) ... Selecting previously unselected package python3-msal. Preparing to unpack .../204-python3-msal_1.20.0-1_all.deb ... Unpacking python3-msal (1.20.0-1) ... Selecting previously unselected package python3-gi. Preparing to unpack .../205-python3-gi_3.42.2-3_amd64.deb ... Unpacking python3-gi (3.42.2-3) ... Selecting previously unselected package python3-portalocker. Preparing to unpack .../206-python3-portalocker_2.2.1-1_all.deb ... Unpacking python3-portalocker (2.2.1-1) ... Selecting previously unselected package python3-msal-extensions. Preparing to unpack .../207-python3-msal-extensions_1.0.0-2_all.deb ... Unpacking python3-msal-extensions (1.0.0-2) ... Selecting previously unselected package python3-ruamel.yaml.clib:amd64. Preparing to unpack .../208-python3-ruamel.yaml.clib_0.2.7-1+b1_amd64.deb ... Unpacking python3-ruamel.yaml.clib:amd64 (0.2.7-1+b1) ... Selecting previously unselected package python3-ruamel.yaml. Preparing to unpack .../209-python3-ruamel.yaml_0.17.16-1_all.deb ... Unpacking python3-ruamel.yaml (0.17.16-1) ... Selecting previously unselected package python3-strictyaml. Preparing to unpack .../210-python3-strictyaml_1.6.1-2_all.deb ... Unpacking python3-strictyaml (1.6.1-2) ... Selecting previously unselected package python3-tqdm. Preparing to unpack .../211-python3-tqdm_4.64.0-2_all.deb ... Unpacking python3-tqdm (4.64.0-2) ... Selecting previously unselected package python3-uamqp. Preparing to unpack .../212-python3-uamqp_1.5.3-1+b3_amd64.deb ... Unpacking python3-uamqp (1.5.3-1+b3) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../213-python3-yaml_6.0-3+b1_amd64.deb ... Unpacking python3-yaml (6.0-3+b1) ... Selecting previously unselected package python3-azure. Preparing to unpack .../214-python3-azure_20221101+git-1_all.deb ... Unpacking python3-azure (20221101+git-1) ... Selecting previously unselected package python3-bcrypt. Preparing to unpack .../215-python3-bcrypt_3.2.0-1+b2_amd64.deb ... Unpacking python3-bcrypt (3.2.0-1+b2) ... Selecting previously unselected package python3-gast. Preparing to unpack .../216-python3-gast_0.5.2-2_all.deb ... Unpacking python3-gast (0.5.2-2) ... Selecting previously unselected package python3-beniget. Preparing to unpack .../217-python3-beniget_0.4.1-2_all.deb ... Unpacking python3-beniget (0.4.1-2) ... Selecting previously unselected package python3.11. Preparing to unpack .../218-python3.11_3.11.0-3_amd64.deb ... Unpacking python3.11 (3.11.0-3) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../219-python3-numpy_1%3a1.21.5-2_amd64.deb ... Unpacking python3-numpy (1:1.21.5-2) ... Selecting previously unselected package python3-renderpm:amd64. Preparing to unpack .../220-python3-renderpm_3.6.11-1+b1_amd64.deb ... Unpacking python3-renderpm:amd64 (3.6.11-1+b1) ... Selecting previously unselected package python3-reportlab-accel:amd64. Preparing to unpack .../221-python3-reportlab-accel_3.6.11-1+b1_amd64.deb ... Unpacking python3-reportlab-accel:amd64 (3.6.11-1+b1) ... Selecting previously unselected package python3-tk:amd64. Preparing to unpack .../222-python3-tk_3.10.8-1_amd64.deb ... Unpacking python3-tk:amd64 (3.10.8-1) ... Selecting previously unselected package python3-pil.imagetk:amd64. Preparing to unpack .../223-python3-pil.imagetk_9.2.0-1.1+b1_amd64.deb ... Unpacking python3-pil.imagetk:amd64 (9.2.0-1.1+b1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../224-python3-pil_9.2.0-1.1+b1_amd64.deb ... Unpacking python3-pil:amd64 (9.2.0-1.1+b1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../225-python3-reportlab_3.6.11-1_all.deb ... Unpacking python3-reportlab (3.6.11-1) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../226-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../227-python3-biopython_1.80+dfsg-1_amd64.deb ... Unpacking python3-biopython (1.80+dfsg-1) ... Selecting previously unselected package python3-jmespath. Preparing to unpack .../228-python3-jmespath_1.0.1-1_all.deb ... Unpacking python3-jmespath (1.0.1-1) ... Selecting previously unselected package python3-botocore. Preparing to unpack .../229-python3-botocore_1.26.8+repack-1_all.deb ... Unpacking python3-botocore (1.26.8+repack-1) ... Selecting previously unselected package python3-s3transfer. Preparing to unpack .../230-python3-s3transfer_0.6.0-1_all.deb ... Unpacking python3-s3transfer (0.6.0-1) ... Selecting previously unselected package python3-boto3. Preparing to unpack .../231-python3-boto3_1.23.8+dfsg-1_all.deb ... Unpacking python3-boto3 (1.23.8+dfsg-1) ... Selecting previously unselected package python3-brotli. Preparing to unpack .../232-python3-brotli_1.0.9-2+b5_amd64.deb ... Unpacking python3-brotli (1.0.9-2+b5) ... Selecting previously unselected package python3-configargparse. Preparing to unpack .../233-python3-configargparse_1.5.3-1_all.deb ... Unpacking python3-configargparse (1.5.3-1) ... Selecting previously unselected package python3-connection-pool. Preparing to unpack .../234-python3-connection-pool_0.0.3-2_all.deb ... Unpacking python3-connection-pool (0.0.3-2) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../235-python3-cycler_0.11.0-1_all.deb ... Unpacking python3-cycler (0.11.0-1) ... Selecting previously unselected package python3-datrie:amd64. Preparing to unpack .../236-python3-datrie_0.8.2-3+b1_amd64.deb ... Unpacking python3-datrie:amd64 (0.8.2-3+b1) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../237-python3-decorator_5.1.1-2_all.deb ... Unpacking python3-decorator (5.1.1-2) ... Selecting previously unselected package python3-roman. Preparing to unpack .../238-python3-roman_3.3-2_all.deb ... Unpacking python3-roman (3.3-2) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../239-python3-docutils_0.17.1+dfsg-3_all.deb ... Unpacking python3-docutils (0.17.1+dfsg-3) ... Selecting previously unselected package python3-fastjsonschema. Preparing to unpack .../240-python3-fastjsonschema_2.15.1-3_all.deb ... Unpacking python3-fastjsonschema (2.15.1-3) ... Selecting previously unselected package python3-ply. Preparing to unpack .../241-python3-ply_3.11-5_all.deb ... Unpacking python3-ply (3.11-5) ... Selecting previously unselected package python3-pythran. Preparing to unpack .../242-python3-pythran_0.11.0+ds-7_amd64.deb ... Unpacking python3-pythran (0.11.0+ds-7) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../243-python3-scipy_1.8.1-14+b1_amd64.deb ... Unpacking python3-scipy (1.8.1-14+b1) ... Selecting previously unselected package python3-ufolib2. Preparing to unpack .../244-python3-ufolib2_0.13.1+dfsg1-1_all.deb ... Unpacking python3-ufolib2 (0.13.1+dfsg1-1) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../245-python3-mpmath_1.2.1-2_all.deb ... Unpacking python3-mpmath (1.2.1-2) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../246-python3-sympy_1.11.1-1_all.deb ... Unpacking python3-sympy (1.11.1-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../247-python3-tz_2022.6-1_all.deb ... Unpacking python3-tz (2022.6-1) ... Selecting previously unselected package python3-fs. Preparing to unpack .../248-python3-fs_2.4.16-2_all.deb ... Unpacking python3-fs (2.4.16-2) ... Selecting previously unselected package python3-lxml:amd64. Preparing to unpack .../249-python3-lxml_4.9.1-1+b2_amd64.deb ... Unpacking python3-lxml:amd64 (4.9.1-1+b2) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../250-python3-lz4_4.0.2+dfsg-1+b1_amd64.deb ... Unpacking python3-lz4 (4.0.2+dfsg-1+b1) ... Selecting previously unselected package python3-unicodedata2. Preparing to unpack .../251-python3-unicodedata2_14.0.0+ds2-1+b1_amd64.deb ... Unpacking python3-unicodedata2 (14.0.0+ds2-1+b1) ... Selecting previously unselected package unicode-data. Preparing to unpack .../252-unicode-data_15.0.0-1_all.deb ... Unpacking unicode-data (15.0.0-1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../253-python3-fonttools_4.37.4-1+b1_amd64.deb ... Unpacking python3-fonttools (4.37.4-1+b1) ... Selecting previously unselected package python3-smmap. Preparing to unpack .../254-python3-smmap_5.0.0-1_all.deb ... Unpacking python3-smmap (5.0.0-1) ... Selecting previously unselected package python3-gitdb. Preparing to unpack .../255-python3-gitdb_4.0.9-2_all.deb ... Unpacking python3-gitdb (4.0.9-2) ... Selecting previously unselected package python3-git. Preparing to unpack .../256-python3-git_3.1.27-1_all.deb ... Unpacking python3-git (3.1.27-1) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../257-python3-markupsafe_2.1.1-1+b1_amd64.deb ... Unpacking python3-markupsafe (2.1.1-1+b1) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../258-python3-jinja2_3.0.3-2_all.deb ... Unpacking python3-jinja2 (3.0.3-2) ... Selecting previously unselected package python3-traitlets. Preparing to unpack .../259-python3-traitlets_5.5.0-1_all.deb ... Unpacking python3-traitlets (5.5.0-1) ... Selecting previously unselected package python3-jupyter-core. Preparing to unpack .../260-python3-jupyter-core_4.11.2-1_all.deb ... Unpacking python3-jupyter-core (4.11.2-1) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../261-python3-kiwisolver_1.3.2-1+b3_amd64.deb ... Unpacking python3-kiwisolver (1.3.2-1+b3) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../262-python3-matplotlib_3.5.2-4_amd64.deb ... Unpacking python3-matplotlib (3.5.2-4) ... Selecting previously unselected package python3-nacl. Preparing to unpack .../263-python3-nacl_1.5.0-2_amd64.deb ... Unpacking python3-nacl (1.5.0-2) ... Selecting previously unselected package python3-nbformat. Preparing to unpack .../264-python3-nbformat_5.5.0-1_all.deb ... Unpacking python3-nbformat (5.5.0-1) ... Selecting previously unselected package python3-paramiko. Preparing to unpack .../265-python3-paramiko_2.10.4-1_all.deb ... Unpacking python3-paramiko (2.10.4-1) ... Selecting previously unselected package python3-psutil. Preparing to unpack .../266-python3-psutil_5.9.2-1+b1_amd64.deb ... Unpacking python3-psutil (5.9.2-1+b1) ... Selecting previously unselected package python3-pulp. Preparing to unpack .../267-python3-pulp_2.6.0+dfsg-1_all.deb ... Unpacking python3-pulp (2.6.0+dfsg-1) ... Selecting previously unselected package python3-ratelimiter. Preparing to unpack .../268-python3-ratelimiter_1.2.0.post0-3_amd64.deb ... Unpacking python3-ratelimiter (1.2.0.post0-3) ... Selecting previously unselected package python3-smart-open. Preparing to unpack .../269-python3-smart-open_5.2.1-5_all.deb ... Unpacking python3-smart-open (5.2.1-5) ... Selecting previously unselected package python3-stopit. Preparing to unpack .../270-python3-stopit_1.1.2-2_all.deb ... Unpacking python3-stopit (1.1.2-2) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../271-python3-tabulate_0.8.9-1_all.deb ... Unpacking python3-tabulate (0.8.9-1) ... Selecting previously unselected package python3-toposort. Preparing to unpack .../272-python3-toposort_1.7-1_all.deb ... Unpacking python3-toposort (1.7-1) ... Selecting previously unselected package python3-wrapt. Preparing to unpack .../273-python3-wrapt_1.14.1-2+b1_amd64.deb ... Unpacking python3-wrapt (1.14.1-2+b1) ... Selecting previously unselected package r-bioc-biocgenerics. Preparing to unpack .../274-r-bioc-biocgenerics_0.44.0-2_all.deb ... Unpacking r-bioc-biocgenerics (0.44.0-2) ... Selecting previously unselected package r-cran-digest. Preparing to unpack .../275-r-cran-digest_0.6.30-2_amd64.deb ... Unpacking r-cran-digest (0.6.30-2) ... Selecting previously unselected package r-cran-glue. Preparing to unpack .../276-r-cran-glue_1.6.2-1_amd64.deb ... Unpacking r-cran-glue (1.6.2-1) ... Selecting previously unselected package r-cran-gtable. Preparing to unpack .../277-r-cran-gtable_0.3.1+dfsg-1_all.deb ... Unpacking r-cran-gtable (0.3.1+dfsg-1) ... Selecting previously unselected package r-cran-isoband. Preparing to unpack .../278-r-cran-isoband_0.2.6-1_amd64.deb ... Unpacking r-cran-isoband (0.2.6-1) ... Selecting previously unselected package r-cran-mass. Preparing to unpack .../279-r-cran-mass_7.3-58.1-1_amd64.deb ... Unpacking r-cran-mass (7.3-58.1-1) ... Selecting previously unselected package r-cran-lattice. Preparing to unpack .../280-r-cran-lattice_0.20-45-3_amd64.deb ... Unpacking r-cran-lattice (0.20-45-3) ... Selecting previously unselected package r-cran-nlme. Preparing to unpack .../281-r-cran-nlme_3.1.160-1_amd64.deb ... Unpacking r-cran-nlme (3.1.160-1) ... Selecting previously unselected package r-cran-matrix. Preparing to unpack .../282-r-cran-matrix_1.5-1-1_amd64.deb ... Unpacking r-cran-matrix (1.5-1-1) ... Selecting previously unselected package r-cran-mgcv. Preparing to unpack .../283-r-cran-mgcv_1.8-41-1_amd64.deb ... Unpacking r-cran-mgcv (1.8-41-1) ... Selecting previously unselected package r-cran-rlang. Preparing to unpack .../284-r-cran-rlang_1.0.6-1_amd64.deb ... Unpacking r-cran-rlang (1.0.6-1) ... Selecting previously unselected package r-cran-farver. Preparing to unpack .../285-r-cran-farver_2.1.1-1_amd64.deb ... Unpacking r-cran-farver (2.1.1-1) ... Selecting previously unselected package r-cran-labeling. Preparing to unpack .../286-r-cran-labeling_0.4.2-1_all.deb ... Unpacking r-cran-labeling (0.4.2-1) ... Selecting previously unselected package r-cran-cli. Preparing to unpack .../287-r-cran-cli_3.4.1-1_amd64.deb ... Unpacking r-cran-cli (3.4.1-1) ... Selecting previously unselected package r-cran-lifecycle. Preparing to unpack .../288-r-cran-lifecycle_1.0.3+dfsg-1_all.deb ... Unpacking r-cran-lifecycle (1.0.3+dfsg-1) ... Selecting previously unselected package r-cran-colorspace. Preparing to unpack .../289-r-cran-colorspace_2.0-3+dfsg-1_amd64.deb ... Unpacking r-cran-colorspace (2.0-3+dfsg-1) ... Selecting previously unselected package r-cran-munsell. Preparing to unpack .../290-r-cran-munsell_0.5.0-2_all.deb ... Unpacking r-cran-munsell (0.5.0-2) ... Selecting previously unselected package r-cran-r6. Preparing to unpack .../291-r-cran-r6_2.5.1-1_all.deb ... Unpacking r-cran-r6 (2.5.1-1) ... Selecting previously unselected package r-cran-rcolorbrewer. Preparing to unpack .../292-r-cran-rcolorbrewer_1.1-3-1_all.deb ... Unpacking r-cran-rcolorbrewer (1.1-3-1) ... Selecting previously unselected package r-cran-viridislite. Preparing to unpack .../293-r-cran-viridislite_0.4.1-1_all.deb ... Unpacking r-cran-viridislite (0.4.1-1) ... Selecting previously unselected package r-cran-scales. Preparing to unpack .../294-r-cran-scales_1.2.1-1_all.deb ... Unpacking r-cran-scales (1.2.1-1) ... Selecting previously unselected package r-cran-fansi. Preparing to unpack .../295-r-cran-fansi_1.0.3-1_amd64.deb ... Unpacking r-cran-fansi (1.0.3-1) ... Selecting previously unselected package r-cran-magrittr. Preparing to unpack .../296-r-cran-magrittr_2.0.3-1_amd64.deb ... Unpacking r-cran-magrittr (2.0.3-1) ... Selecting previously unselected package r-cran-utf8. Preparing to unpack .../297-r-cran-utf8_1.2.2-1_amd64.deb ... Unpacking r-cran-utf8 (1.2.2-1) ... Selecting previously unselected package r-cran-vctrs. Preparing to unpack .../298-r-cran-vctrs_0.5.1-1_amd64.deb ... Unpacking r-cran-vctrs (0.5.1-1) ... Selecting previously unselected package r-cran-pillar. Preparing to unpack .../299-r-cran-pillar_1.8.1+dfsg-1_all.deb ... Unpacking r-cran-pillar (1.8.1+dfsg-1) ... Selecting previously unselected package r-cran-pkgconfig. Preparing to unpack .../300-r-cran-pkgconfig_2.0.3-2_all.deb ... Unpacking r-cran-pkgconfig (2.0.3-2) ... Selecting previously unselected package r-cran-tibble. Preparing to unpack .../301-r-cran-tibble_3.1.8+dfsg-1_amd64.deb ... Unpacking r-cran-tibble (3.1.8+dfsg-1) ... Selecting previously unselected package r-cran-withr. Preparing to unpack .../302-r-cran-withr_2.5.0-1_all.deb ... Unpacking r-cran-withr (2.5.0-1) ... Selecting previously unselected package r-cran-ggplot2. Preparing to unpack .../303-r-cran-ggplot2_3.3.6+dfsg-1_all.deb ... Unpacking r-cran-ggplot2 (3.3.6+dfsg-1) ... Selecting previously unselected package r-cran-pkgkitten. Preparing to unpack .../304-r-cran-pkgkitten_0.2.2-2_all.deb ... Unpacking r-cran-pkgkitten (0.2.2-2) ... Selecting previously unselected package r-cran-rcpp. Preparing to unpack .../305-r-cran-rcpp_1.0.9-1_amd64.deb ... Unpacking r-cran-rcpp (1.0.9-1) ... Selecting previously unselected package r-cran-plyr. Preparing to unpack .../306-r-cran-plyr_1.8.8-1_amd64.deb ... Unpacking r-cran-plyr (1.8.8-1) ... Selecting previously unselected package r-cran-stringi. Preparing to unpack .../307-r-cran-stringi_1.7.8-1+b1_amd64.deb ... Unpacking r-cran-stringi (1.7.8-1+b1) ... Selecting previously unselected package r-cran-stringr. Preparing to unpack .../308-r-cran-stringr_1.4.1-1_all.deb ... Unpacking r-cran-stringr (1.4.1-1) ... Selecting previously unselected package r-cran-reshape2. Preparing to unpack .../309-r-cran-reshape2_1.4.4-2_amd64.deb ... Unpacking r-cran-reshape2 (1.4.4-2) ... Selecting previously unselected package r-cran-gridextra. Preparing to unpack .../310-r-cran-gridextra_2.3-3_all.deb ... Unpacking r-cran-gridextra (2.3-3) ... Selecting previously unselected package r-cran-xml. Preparing to unpack .../311-r-cran-xml_3.99-0.12-1_amd64.deb ... Unpacking r-cran-xml (3.99-0.12-1) ... Selecting previously unselected package r-bioc-savr. Preparing to unpack .../312-r-bioc-savr_1.36.0-2_all.deb ... Unpacking r-bioc-savr (1.36.0-2) ... Selecting previously unselected package r-cran-sparsem. Preparing to unpack .../313-r-cran-sparsem_1.81-1_amd64.deb ... Unpacking r-cran-sparsem (1.81-1) ... Selecting previously unselected package r-cran-matrixmodels. Preparing to unpack .../314-r-cran-matrixmodels_0.5-1-1_all.deb ... Unpacking r-cran-matrixmodels (0.5-1-1) ... Selecting previously unselected package r-cran-survival. Preparing to unpack .../315-r-cran-survival_3.4-0-1_amd64.deb ... Unpacking r-cran-survival (3.4-0-1) ... Selecting previously unselected package r-cran-matrixstats. Preparing to unpack .../316-r-cran-matrixstats_0.63.0-1_amd64.deb ... Unpacking r-cran-matrixstats (0.63.0-1) ... Selecting previously unselected package r-cran-rcpparmadillo. Preparing to unpack .../317-r-cran-rcpparmadillo_0.11.4.2.1-1_amd64.deb ... Unpacking r-cran-rcpparmadillo (0.11.4.2.1-1) ... Selecting previously unselected package r-cran-class. Preparing to unpack .../318-r-cran-class_7.3-20-1_amd64.deb ... Unpacking r-cran-class (7.3-20-1) ... Selecting previously unselected package r-cran-proxy. Preparing to unpack .../319-r-cran-proxy_0.4-27-1_amd64.deb ... Unpacking r-cran-proxy (0.4-27-1) ... Selecting previously unselected package r-cran-e1071. Preparing to unpack .../320-r-cran-e1071_1.7-12-1_amd64.deb ... Unpacking r-cran-e1071 (1.7-12-1) ... Selecting previously unselected package r-cran-codetools. Preparing to unpack .../321-r-cran-codetools_0.2-18-1_all.deb ... Unpacking r-cran-codetools (0.2-18-1) ... Selecting previously unselected package r-cran-iterators. Preparing to unpack .../322-r-cran-iterators_1.0.14-1_all.deb ... Unpacking r-cran-iterators (1.0.14-1) ... Selecting previously unselected package r-cran-foreach. Preparing to unpack .../323-r-cran-foreach_1.5.2-1_all.deb ... Unpacking r-cran-foreach (1.5.2-1) ... Selecting previously unselected package r-cran-data.table. Preparing to unpack .../324-r-cran-data.table_1.14.6+dfsg-1_amd64.deb ... Unpacking r-cran-data.table (1.14.6+dfsg-1) ... Selecting previously unselected package r-cran-modelmetrics. Preparing to unpack .../325-r-cran-modelmetrics_1.2.2.2-1+b1_amd64.deb ... Unpacking r-cran-modelmetrics (1.2.2.2-1+b1) ... Selecting previously unselected package r-cran-proc. Preparing to unpack .../326-r-cran-proc_1.18.0-1+b1_amd64.deb ... Unpacking r-cran-proc (1.18.0-1+b1) ... Selecting previously unselected package r-cran-generics. Preparing to unpack .../327-r-cran-generics_0.1.3-1_all.deb ... Unpacking r-cran-generics (0.1.3-1) ... Selecting previously unselected package r-cran-tidyselect. Preparing to unpack .../328-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... Selecting previously unselected package r-cran-dplyr. Preparing to unpack .../329-r-cran-dplyr_1.0.10-1_amd64.deb ... Unpacking r-cran-dplyr (1.0.10-1) ... Selecting previously unselected package r-cran-ellipsis. Preparing to unpack .../330-r-cran-ellipsis_0.3.2-2_amd64.deb ... Unpacking r-cran-ellipsis (0.3.2-2) ... Selecting previously unselected package r-cran-gower. Preparing to unpack .../331-r-cran-gower_1.0.0-1_amd64.deb ... Unpacking r-cran-gower (1.0.0-1) ... Selecting previously unselected package r-cran-hardhat. Preparing to unpack .../332-r-cran-hardhat_1.2.0+dfsg-1_all.deb ... Unpacking r-cran-hardhat (1.2.0+dfsg-1) ... Selecting previously unselected package r-cran-rpart. Preparing to unpack .../333-r-cran-rpart_4.1.19-1_amd64.deb ... Unpacking r-cran-rpart (4.1.19-1) ... Selecting previously unselected package r-cran-nnet. Preparing to unpack .../334-r-cran-nnet_7.3-18-1_amd64.deb ... Unpacking r-cran-nnet (7.3-18-1) ... Selecting previously unselected package r-cran-kernsmooth. Preparing to unpack .../335-r-cran-kernsmooth_2.23-20-1_amd64.deb ... Unpacking r-cran-kernsmooth (2.23-20-1) ... Selecting previously unselected package r-cran-globals. Preparing to unpack .../336-r-cran-globals_0.16.2-1_all.deb ... Unpacking r-cran-globals (0.16.2-1) ... Selecting previously unselected package r-cran-listenv. Preparing to unpack .../337-r-cran-listenv_0.8.0+dfsg-1_all.deb ... Unpacking r-cran-listenv (0.8.0+dfsg-1) ... Selecting previously unselected package r-cran-parallelly. Preparing to unpack .../338-r-cran-parallelly_1.32.1-1_all.deb ... Unpacking r-cran-parallelly (1.32.1-1) ... Selecting previously unselected package r-cran-future. Preparing to unpack .../339-r-cran-future_1.29.0+dfsg-1_all.deb ... Unpacking r-cran-future (1.29.0+dfsg-1) ... Selecting previously unselected package r-cran-future.apply. Preparing to unpack .../340-r-cran-future.apply_1.10.0+dfsg-1_all.deb ... Unpacking r-cran-future.apply (1.10.0+dfsg-1) ... Selecting previously unselected package r-cran-numderiv. Preparing to unpack .../341-r-cran-numderiv_2016.8-1.1-3_all.deb ... Unpacking r-cran-numderiv (2016.8-1.1-3) ... Selecting previously unselected package r-cran-progressr. Preparing to unpack .../342-r-cran-progressr_0.11.0-1_all.deb ... Unpacking r-cran-progressr (0.11.0-1) ... Selecting previously unselected package r-cran-squarem. Preparing to unpack .../343-r-cran-squarem_2021.1-1_all.deb ... Unpacking r-cran-squarem (2021.1-1) ... Selecting previously unselected package r-cran-lava. Preparing to unpack .../344-r-cran-lava_1.7.0+dfsg-1_all.deb ... Unpacking r-cran-lava (1.7.0+dfsg-1) ... Selecting previously unselected package r-cran-prodlim. Preparing to unpack .../345-r-cran-prodlim_2019.11.13-1+b1_amd64.deb ... Unpacking r-cran-prodlim (2019.11.13-1+b1) ... Selecting previously unselected package r-cran-ipred. Preparing to unpack .../346-r-cran-ipred_0.9-13-1_amd64.deb ... Unpacking r-cran-ipred (0.9-13-1) ... Selecting previously unselected package r-cran-cpp11. Preparing to unpack .../347-r-cran-cpp11_0.4.3-1_all.deb ... Unpacking r-cran-cpp11 (0.4.3-1) ... Selecting previously unselected package r-cran-timechange. Preparing to unpack .../348-r-cran-timechange_0.1.1-3_amd64.deb ... Unpacking r-cran-timechange (0.1.1-3) ... Selecting previously unselected package r-cran-lubridate. Preparing to unpack .../349-r-cran-lubridate_1.9.0+dfsg-1_amd64.deb ... Unpacking r-cran-lubridate (1.9.0+dfsg-1) ... Selecting previously unselected package r-cran-purrr. Preparing to unpack .../350-r-cran-purrr_0.3.5-1_amd64.deb ... Unpacking r-cran-purrr (0.3.5-1) ... Selecting previously unselected package r-cran-tidyr. Preparing to unpack .../351-r-cran-tidyr_1.2.1-1_amd64.deb ... Unpacking r-cran-tidyr (1.2.1-1) ... Selecting previously unselected package r-cran-timedate. Preparing to unpack .../352-r-cran-timedate_4021.106-1_amd64.deb ... Unpacking r-cran-timedate (4021.106-1) ... Selecting previously unselected package r-cran-recipes. Preparing to unpack .../353-r-cran-recipes_1.0.2+dfsg-1_all.deb ... Unpacking r-cran-recipes (1.0.2+dfsg-1) ... Selecting previously unselected package r-cran-caret. Preparing to unpack .../354-r-cran-caret_6.0-93+dfsg-1_amd64.deb ... Unpacking r-cran-caret (6.0-93+dfsg-1) ... Selecting previously unselected package r-cran-conquer. Preparing to unpack .../355-r-cran-conquer_1.3.1-1_amd64.deb ... Unpacking r-cran-conquer (1.3.1-1) ... Selecting previously unselected package r-cran-quantreg. Preparing to unpack .../356-r-cran-quantreg_5.94-1_amd64.deb ... Unpacking r-cran-quantreg (5.94-1) ... Selecting previously unselected package snakemake. Preparing to unpack .../357-snakemake_7.12.1-1_all.deb ... Unpacking snakemake (7.12.1-1) ... Selecting previously unselected package qcumber. Preparing to unpack .../358-qcumber_2.3.0-2_all.deb ... Unpacking qcumber (2.3.0-2) ... Setting up media-types (8.0.0) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.13.1-1+b1) ... Setting up libpixman-1-0:amd64 (0.42.2-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libsodium23:amd64 (1.0.18-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up libdatrie1:amd64 (0.2.13-2+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libglib2.0-0:amd64 (2.74.2-1) ... No schema files found: doing nothing. Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up fonts-lyx (2.3.6.1-1) ... Setting up unzip (6.0-27) ... Setting up libbrotli1:amd64 (1.0.9-2+b5) ... Setting up libsqlite3-0:amd64 (3.40.0-1) ... Setting up binutils-common:amd64 (2.39-8) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libnghttp2-14:amd64 (1.50.0-1+b1) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up linux-libc-dev:amd64 (6.0.10-1) ... Setting up libctf-nobfd0:amd64 (2.39-8) ... Setting up libqhull-r8.0:amd64 (2020.2-5) ... Setting up libgomp1:amd64 (12.2.0-9) ... Setting up libjs-angularjs (1.8.2-2) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libkrb5support0:amd64 (1.20.1-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up liberror-perl (0.17029-2) ... Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up zip (3.0-12) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up libblas3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.2-4) ... Setting up libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Setting up libx11-data (2:1.8.1-2) ... Setting up libmpfr6:amd64 (4.1.0-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up xfonts-encodings (1:1.0.4-2.1) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-9) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libjs-d3 (3.5.17-4) ... Setting up libpng16-16:amd64 (1.6.38-2) ... Setting up libmpc3:amd64 (1.2.1-2) ... Setting up libatomic1:amd64 (12.2.0-9) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libk5crypto3:amd64 (1.20.1-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-9) ... Setting up libwebp7:amd64 (1.2.2-2+b2) ... Setting up libubsan1:amd64 (12.2.0-9) ... Setting up libmd0:amd64 (1.0.4-2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:amd64 (1:4.4.33-1) ... Setting up libasan8:amd64 (12.2.0-9) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libopenjp2-7:amd64 (2.5.0-1) ... Setting up git-man (1:2.35.1-1) ... Setting up libthai-data (0.1.29-1) ... Setting up libgirepository-1.0-1:amd64 (1.74.0-2) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-1) ... Setting up libtiff5:amd64 (4.4.0-6) ... Setting up libpython3.11-minimal:amd64 (3.11.0-3) ... Setting up libtsan2:amd64 (12.2.0-9) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.39-8) ... Setting up libisl23:amd64 (0.25-1) ... Setting up libc-dev-bin (2.36-6) ... Setting up python-matplotlib-data (3.5.2-4) ... Setting up openssl (3.0.7-1) ... Setting up libwebpmux3:amd64 (1.2.2-2+b2) ... Setting up libbsd0:amd64 (0.11.7-1) ... Setting up readline-common (8.2-1.2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libcc1-0:amd64 (12.2.0-9) ... Setting up liblsan0:amd64 (12.2.0-9) ... Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libitm1:amd64 (12.2.0-9) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-2) ... Setting up libctf0:amd64 (2.39-8) ... Setting up python3.11-minimal (3.11.0-3) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-9) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libxcb-render0:amd64 (1.15-1) ... Setting up libwebpdemux2:amd64 (1.2.2-2+b2) ... Setting up libreadline8:amd64 (8.2-1.2) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-2+b1) ... Setting up coinor-libcoinutils3v5:amd64 (2.11.4+repack1-2) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libgprofng0:amd64 (2.39-8) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up libgcc-12-dev:amd64 (12.2.0-9) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-1) ... Setting up ucf (3.0043) ... Setting up gir1.2-glib-2.0:amd64 (1.74.0-2) ... Setting up libjs-sphinxdoc (4.5.0-4) ... Setting up coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Setting up libopenblas0:amd64 (0.3.21+ds-2) ... Setting up cpp (4:12.2.0-1) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libcurl4:amd64 (7.86.0-2) ... Setting up libx11-6:amd64 (2:1.8.1-2) ... Setting up libharfbuzz0b:amd64 (5.2.0-2+b1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Setting up binutils-x86-64-linux-gnu (2.39-8) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up fontconfig-config (2.13.1-4.5) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:amd64 (7.86.0-2) ... Setting up binutils (2.39-8) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-2) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-9) ... Setting up coinor-libclp1:amd64 (1.17.6-3) ... Setting up libraqm0:amd64 (0.7.0-4) ... Setting up git (1:2.35.1-1) ... Setting up libxt6:amd64 (1:1.2.1-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.5) ... Setting up coinor-libcgl1:amd64 (0.60.3+repack1-4) ... Setting up coinor-libcbc3:amd64 (2.10.8+ds1-1) ... Setting up fontconfig (2.13.1-4.5) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.0-3) ... Setting up libtk8.6:amd64 (8.6.13-1) ... Setting up libpango-1.0-0:amd64 (1.50.10+ds-1) ... Setting up fonts-urw-base35 (20200910-6) ... Setting up libcairo2:amd64 (1.16.0-6) ... Setting up gcc (4:12.2.0-1) ... Setting up libpython3.10-stdlib:amd64 (3.10.8-3) ... Setting up coinor-cbc (2.10.8+ds1-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-6) ... Setting up libpangoft2-1.0-0:amd64 (1.50.10+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.10+ds-1) ... Setting up libpython3-stdlib:amd64 (3.10.6-1) ... Setting up python3.11 (3.11.0-3) ... Setting up libpython3.10:amd64 (3.10.8-3) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3.10 (3.10.8-3) ... Setting up libstdc++-12-dev:amd64 (12.2.0-9) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3 (3.10.6-1) ... Setting up python3-markupsafe (2.1.1-1+b1) ... Setting up python3-psutil (5.9.2-1+b1) ... Setting up python3-multidict (6.0.2-1+b1) ... Setting up python3-tz (2022.6-1) ... Setting up python3-frozenlist (1.3.3-1) ... Setting up python3-aiosignal (1.3.1-1) ... Setting up python3-ratelimiter (1.2.0.post0-3) ... Setting up python3-async-timeout (4.0.2-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-isodate (0.6.1-1) ... Setting up python3-roman (3.3-2) ... Setting up python3-decorator (5.1.1-2) ... Setting up python3-jinja2 (3.0.3-2) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up python3-pyparsing (3.0.7-3) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-avro (1.11.1+dfsg-1) ... Setting up python3-jmespath (1.0.1-1) ... Setting up python3-brotli (1.0.9-2+b5) ... Setting up python3-gi (3.42.2-3) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-reportlab-accel:amd64 (3.6.11-1+b1) ... Setting up r-base-core (4.2.2.20221110-1) ... Creating config file /etc/R/Renviron with new version Setting up python3-connection-pool (0.0.3-2) ... Setting up r-cran-squarem (2021.1-1) ... Setting up python3-kiwisolver (1.3.2-1+b3) ... Setting up r-cran-gtable (0.3.1+dfsg-1) ... Setting up python3-idna (3.3-1) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up python3-wrapt (1.14.1-2+b1) ... Setting up python3-typing-extensions (4.3.0-2) ... Setting up r-cran-lattice (0.20-45-3) ... Setting up r-cran-nlme (3.1.160-1) ... Setting up r-cran-farver (2.1.1-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-fastjsonschema (2.15.1-3) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-4.1) ... Setting up r-cran-xml (3.99-0.12-1) ... Setting up python3-pyrsistent:amd64 (0.18.1-1+b2) ... Setting up r-cran-viridislite (0.4.1-1) ... Setting up python3-lxml:amd64 (4.9.1-1+b2) ... Setting up python3-traitlets (5.5.0-1) ... Setting up python3-portalocker (2.2.1-1) ... Setting up r-cran-sparsem (1.81-1) ... Setting up r-cran-nnet (7.3-18-1) ... Setting up python3-dateutil (2.8.2-1) ... Setting up python3-datrie:amd64 (0.8.2-3+b1) ... Setting up r-cran-proxy (0.4-27-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up r-cran-numderiv (2016.8-1.1-3) ... Setting up python3-lib2to3 (3.10.8-1) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-yarl (1.8.1-1+b1) ... Setting up python3-smmap (5.0.0-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up python3-cffi-backend:amd64 (1.15.1-3+b1) ... Setting up g++-12 (12.2.0-9) ... Setting up python3-blinker (1.5-1) ... Setting up r-cran-littler (0.3.17-1) ... Setting up python3-pkg-resources (65.5.0-1) ... Setting up python3-distutils (3.10.8-1) ... Setting up python3-toposort (1.7-1) ... Setting up python3-configargparse (1.5.3-1) ... Setting up python3-sympy (1.11.1-1) ... Setting up r-cran-rcpp (1.0.9-1) ... Setting up python3-attr (22.1.0-1) ... Setting up r-cran-codetools (0.2-18-1) ... Setting up r-bioc-biocgenerics (0.44.0-2) ... Setting up r-cran-rlang (1.0.6-1) ... Setting up libboost1.74-dev:amd64 (1.74.0-17+b2) ... Setting up r-cran-matrixstats (0.63.0-1) ... Setting up r-cran-listenv (0.8.0+dfsg-1) ... Setting up python3-renderpm:amd64 (3.6.11-1+b1) ... Setting up littler (0.3.17-1) ... Setting up python3-jwt (2.4.0-2) ... Setting up python3-colorama (0.4.5-3) ... Setting up python3-lz4 (4.0.2+dfsg-1+b1) ... Setting up r-cran-withr (2.5.0-1) ... Setting up python3-pulp (2.6.0+dfsg-1) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up r-cran-generics (0.1.3-1) ... Setting up python3-unicodedata2 (14.0.0+ds2-1+b1) ... Setting up r-cran-iterators (1.0.14-1) ... Setting up r-cran-digest (0.6.30-2) ... Setting up python3-bcrypt (3.2.0-1+b2) ... Setting up python3-ply (3.11-5) ... Setting up python3-tqdm (4.64.0-2) ... Setting up r-cran-gower (1.0.0-1) ... Setting up r-cran-timedate (4021.106-1) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.7-1+b1) ... Setting up r-cran-foreach (1.5.2-1) ... Setting up r-cran-fansi (1.0.3-1) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-aiohttp (3.8.3-1+b1) ... Setting up r-cran-mass (7.3-58.1-1) ... Setting up python3-tabulate (0.8.9-1) ... Setting up python3-all (3.10.6-1) ... Setting up python3-yaml (6.0-3+b1) ... Setting up python3-tk:amd64 (3.10.8-1) ... Setting up python3-gitdb (4.0.9-2) ... Setting up python3-uamqp (1.5.3-1+b3) ... Setting up r-cran-data.table (1.14.6+dfsg-1) ... Setting up r-cran-glue (1.6.2-1) ... Setting up r-cran-cli (3.4.1-1) ... Setting up r-cran-lifecycle (1.0.3+dfsg-1) ... Setting up r-cran-progressr (0.11.0-1) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-2) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.2-1) ... Setting up python3-packaging (21.3-1.1) ... Setting up r-cran-colorspace (2.0-3+dfsg-1) ... Setting up r-cran-parallelly (1.32.1-1) ... Setting up python3-chardet (4.0.0-2) ... Setting up r-cran-stringi (1.7.8-1+b1) ... Setting up python3-jsonschema (4.7.2-3) ... Setting up r-cran-cpp11 (0.4.3-1) ... Setting up r-cran-plyr (1.8.8-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up python3-cryptography (3.4.8-2) ... Setting up r-cran-isoband (0.2.6-1) ... Setting up python3-git (3.1.27-1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-purrr (0.3.5-1) ... Setting up libpython3.10-dev:amd64 (3.10.8-3) ... Setting up r-cran-matrix (1.5-1-1) ... Setting up python3-numpy (1:1.21.5-2) ... Setting up r-cran-kernsmooth (2.23-20-1) ... Setting up python3-ruamel.yaml (0.17.16-1) ... Setting up r-cran-mgcv (1.8-41-1) ... Setting up python3.10-dev (3.10.8-3) ... Setting up g++ (4:12.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3-adal (1.2.7-2) ... Setting up python3-stopit (1.1.2-2) ... Setting up r-cran-rcpparmadillo (0.11.4.2.1-1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up r-cran-globals (0.16.2-1) ... Setting up r-cran-vctrs (0.5.1-1) ... Setting up python3-jupyter-core (4.11.2-1) ... Setting up python3-nacl (1.5.0-2) ... Setting up r-cran-pillar (1.8.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up libpython3-dev:amd64 (3.10.6-1) ... Setting up r-cran-stringr (1.4.1-1) ... Setting up r-cran-class (7.3-20-1) ... Setting up r-cran-modelmetrics (1.2.2.2-1+b1) ... Setting up r-cran-matrixmodels (0.5-1-1) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-tibble (3.1.8+dfsg-1) ... Setting up python3-marshmallow (3.18.0-1) ... Setting up python3-msal (1.20.0-1) ... Setting up r-cran-proc (1.18.0-1+b1) ... Setting up python3-msal-extensions (1.0.0-2) ... Setting up r-cran-survival (3.4-0-1) ... Setting up python3-nbformat (5.5.0-1) ... Setting up r-cran-future (1.29.0+dfsg-1) ... Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up python3-strictyaml (1.6.1-2) ... Setting up r-cran-future.apply (1.10.0+dfsg-1) ... Setting up python3-oauthlib (3.2.1-2) ... Setting up r-cran-timechange (0.1.1-3) ... Setting up libpython3-all-dev:amd64 (3.10.6-1) ... Setting up python3-botocore (1.26.8+repack-1) ... Setting up python3-dev (3.10.6-1) ... Setting up r-cran-scales (1.2.1-1) ... Setting up r-cran-lava (1.7.0+dfsg-1) ... Setting up r-cran-e1071 (1.7-12-1) ... Setting up r-cran-hardhat (1.2.0+dfsg-1) ... Setting up r-cran-dplyr (1.0.10-1) ... Setting up python3-paramiko (2.10.4-1) ... Setting up python3-requests-oauthlib (1.3.0+ds-0.1) ... Setting up python3-all-dev (3.10.6-1) ... Setting up r-cran-lubridate (1.9.0+dfsg-1) ... Setting up r-cran-prodlim (2019.11.13-1+b1) ... Setting up r-cran-ggplot2 (3.3.6+dfsg-1) ... Setting up python3-s3transfer (0.6.0-1) ... Setting up r-cran-rpart (4.1.19-1) ... Setting up r-bioc-savr (1.36.0-2) ... Setting up r-cran-ipred (0.9-13-1) ... Setting up python3-msrest (0.6.21-2) ... Setting up r-cran-tidyr (1.2.1-1) ... Setting up python3-boto3 (1.23.8+dfsg-1) ... Setting up r-cran-recipes (1.0.2+dfsg-1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-msrestazure (0.6.4-2) ... Setting up python3-scipy (1.8.1-14+b1) ... Setting up r-cran-caret (6.0-93+dfsg-1) ... Setting up r-cran-conquer (1.3.1-1) ... Setting up r-cran-quantreg (5.94-1) ... Setting up python3-fonttools (4.37.4-1+b1) ... Setting up python3-pil.imagetk:amd64 (9.2.0-1.1+b1) ... Setting up python3-ufolib2 (0.13.1+dfsg1-1) ... Setting up python3-azure (20221101+git-1) ... Setting up python3-azure-storage (20221101+git-1) ... Setting up python3-pil:amd64 (9.2.0-1.1+b1) ... Setting up python3-reportlab (3.6.11-1) ... Setting up python3-matplotlib (3.5.2-4) ... Setting up python3-smart-open (5.2.1-5) ... Processing triggers for libc-bin (2.36-6) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.17.1+dfsg-3) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-1) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.17.1+dfsg-3) ... Setting up snakemake (7.12.1-1) ... Setting up qcumber (2.3.0-2) ... ************************************************************************* * Minikraken DB is missing. Either move the according files to * * /var/lib/kraken/minikraken_20141208 * or call the script /usr/share/doc/qcumber/get-minikrakendb as root. * ************************************************************************* Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 3m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', '-y', 'install', 'qcumber'] 3m42.5s INFO: Running scripts post_install 3m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_install_exceptions'] 3m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_install_exceptions'] 3m42.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 3m46.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 3m46.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpzaihre7j to sid 3m46.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 3m46.3s INFO: Running scripts pre_distupgrade 3m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 3m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 3m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_distupgrade_exceptions'] 3m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_distupgrade_exceptions'] 3m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 3m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 3m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_distupgrade_zz_database-server'] 3m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_distupgrade_zz_database-server'] 3m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 3m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 3m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', 'update'] 3m50.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [161 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9397 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6948 kB] Fetched 16.5 MB in 3s (5272 kB/s) Reading package lists... 3m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', 'update'] 3m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', '-yf', 'dist-upgrade'] 4m3.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpython3.11 libpython3.11-dev python3.11-dev The following packages will be upgraded: dpkg git git-man libattr1 libblas3 libjbig0 liblapack3 liblzma5 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpcre2-8-0 libpng16-16 libpython3-all-dev libpython3-dev libpython3-stdlib linux-libc-dev python3 python3-all python3-all-dev python3-beniget python3-biopython python3-cffi-backend python3-colorama python3-dev python3-minimal python3-roman r-cran-ggplot2 r-cran-matrix r-cran-xml rpcsvc-proto tar zlib1g zlib1g-dev 35 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 48.2 MB of archives. After this operation, 44.0 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 tar amd64 1.34+dfsg-1.1 [836 kB] Get:2 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.21.11 [2404 kB] Get:3 http://deb.debian.org/debian sid/main amd64 python3-all-dev amd64 3.10.6-3 [1076 B] Get:4 http://deb.debian.org/debian sid/main amd64 python3-all amd64 3.10.6-3 [1064 B] Get:5 http://deb.debian.org/debian sid/main amd64 libpython3-all-dev amd64 3.10.6-3 [1072 B] Get:6 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.10.6-3 [8816 B] Get:7 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.10.6-3 [25.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.10.6-3 [25.5 kB] Get:9 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.10.6-3 [25.2 kB] Get:10 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:11 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.2.13.dfsg-1 [86.7 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.11 amd64 3.11.0-3 [1986 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpython3.11-dev amd64 3.11.0-3 [4738 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3.11-dev amd64 3.11.0-3 [615 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.10.6-3 [8588 B] Get:16 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.1-3 [15.4 kB] Get:17 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.2.9-0.0 [189 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.40-3 [260 kB] Get:19 http://deb.debian.org/debian sid/main amd64 git amd64 1:2.38.1-1 [7094 kB] Get:20 http://deb.debian.org/debian sid/main amd64 git-man all 1:2.38.1-1 [2027 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-3 [4972 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libopenblas0-pthread amd64 0.3.21+ds-3 [6708 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libopenblas0 amd64 0.3.21+ds-3 [32.5 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libopenblas-dev amd64 0.3.21+ds-3 [44.9 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6 [31.6 kB] Get:27 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:29 http://deb.debian.org/debian sid/main amd64 linux-libc-dev amd64 6.0.10-2 [1688 kB] Get:30 http://deb.debian.org/debian sid/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:31 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.80+dfsg-2 [1601 kB] Get:32 http://deb.debian.org/debian sid/main amd64 python3-cffi-backend amd64 1.15.1-4 [94.2 kB] Get:33 http://deb.debian.org/debian sid/main amd64 python3-colorama all 0.4.6-2 [36.8 kB] Get:34 http://deb.debian.org/debian sid/main amd64 python3-roman all 3.3-3 [9880 B] Get:35 http://deb.debian.org/debian sid/main amd64 r-cran-ggplot2 all 3.4.0+dfsg-1 [3320 kB] Get:36 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.5-3-1 [3822 kB] Get:37 http://deb.debian.org/debian sid/main amd64 r-cran-xml amd64 3.99-0.13-1 [1717 kB] Get:38 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 48.2 MB in 0s (107 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84795 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1.1_amd64.deb ... Unpacking tar (1.34+dfsg-1.1) over (1.34+dfsg-1) ... Setting up tar (1.34+dfsg-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84795 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.11_amd64.deb ... Unpacking dpkg (1.21.11) over (1.21.9+b1) ... Setting up dpkg (1.21.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84793 files and directories currently installed.) Preparing to unpack .../0-python3-all-dev_3.10.6-3_amd64.deb ... Unpacking python3-all-dev (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../1-python3-all_3.10.6-3_amd64.deb ... Unpacking python3-all (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../2-libpython3-all-dev_3.10.6-3_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../3-libpython3-dev_3.10.6-3_amd64.deb ... Unpacking libpython3-dev:amd64 (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../4-python3-dev_3.10.6-3_amd64.deb ... Unpacking python3-dev (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../5-python3-minimal_3.10.6-3_amd64.deb ... Unpacking python3-minimal (3.10.6-3) over (3.10.6-1) ... Setting up python3-minimal (3.10.6-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84793 files and directories currently installed.) Preparing to unpack .../python3_3.10.6-3_amd64.deb ... Unpacking python3 (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) over (1:1.2.11.dfsg-4.1) ... Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.13.dfsg-1) over (1:1.2.11.dfsg-4.1) ... Setting up zlib1g:amd64 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libpython3.11:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84796 files and directories currently installed.) Preparing to unpack .../libpython3.11_3.11.0-3_amd64.deb ... Unpacking libpython3.11:amd64 (3.11.0-3) ... Selecting previously unselected package libpython3.11-dev:amd64. Preparing to unpack .../libpython3.11-dev_3.11.0-3_amd64.deb ... Unpacking libpython3.11-dev:amd64 (3.11.0-3) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../python3.11-dev_3.11.0-3_amd64.deb ... Unpacking python3.11-dev (3.11.0-3) ... Preparing to unpack .../libpython3-stdlib_3.10.6-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../libattr1_1%3a2.5.1-3_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.1-3) over (1:2.5.1-1) ... Setting up libattr1:amd64 (1:2.5.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85032 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.9-0.0_amd64.deb ... Unpacking liblzma5:amd64 (5.2.9-0.0) over (5.2.8-0.0) ... Setting up liblzma5:amd64 (5.2.9-0.0) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85032 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.40-3_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.40-3) over (10.40-2) ... Setting up libpcre2-8-0:amd64 (10.40-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85032 files and directories currently installed.) Preparing to unpack .../00-git_1%3a2.38.1-1_amd64.deb ... Unpacking git (1:2.38.1-1) over (1:2.35.1-1) ... Preparing to unpack .../01-git-man_1%3a2.38.1-1_all.deb ... Unpacking git-man (1:2.38.1-1) over (1:2.35.1-1) ... Preparing to unpack .../02-libopenblas-pthread-dev_0.3.21+ds-3_amd64.deb ... Unpacking libopenblas-pthread-dev:amd64 (0.3.21+ds-3) over (0.3.21+ds-2) ... Preparing to unpack .../03-libopenblas0-pthread_0.3.21+ds-3_amd64.deb ... Unpacking libopenblas0-pthread:amd64 (0.3.21+ds-3) over (0.3.21+ds-2) ... Preparing to unpack .../04-libopenblas0_0.3.21+ds-3_amd64.deb ... Unpacking libopenblas0:amd64 (0.3.21+ds-3) over (0.3.21+ds-2) ... Preparing to unpack .../05-libopenblas-dev_0.3.21+ds-3_amd64.deb ... Unpacking libopenblas-dev:amd64 (0.3.21+ds-3) over (0.3.21+ds-2) ... Preparing to unpack .../06-libblas3_3.11.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2) over (3.10.1-2) ... Preparing to unpack .../07-libjbig0_2.1-6_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6) over (2.1-3.1+b2) ... Preparing to unpack .../08-liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) over (3.10.1-2) ... Preparing to unpack .../09-libpng16-16_1.6.39-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.39-2) over (1.6.38-2) ... Preparing to unpack .../10-linux-libc-dev_6.0.10-2_amd64.deb ... Unpacking linux-libc-dev:amd64 (6.0.10-2) over (6.0.10-1) ... Preparing to unpack .../11-python3-beniget_0.4.1-3_all.deb ... Unpacking python3-beniget (0.4.1-3) over (0.4.1-2) ... Preparing to unpack .../12-python3-biopython_1.80+dfsg-2_amd64.deb ... Unpacking python3-biopython (1.80+dfsg-2) over (1.80+dfsg-1) ... Preparing to unpack .../13-python3-cffi-backend_1.15.1-4_amd64.deb ... Unpacking python3-cffi-backend:amd64 (1.15.1-4) over (1.15.1-3+b1) ... Preparing to unpack .../14-python3-colorama_0.4.6-2_all.deb ... Unpacking python3-colorama (0.4.6-2) over (0.4.5-3) ... Preparing to unpack .../15-python3-roman_3.3-3_all.deb ... Unpacking python3-roman (3.3-3) over (3.3-2) ... Preparing to unpack .../16-r-cran-ggplot2_3.4.0+dfsg-1_all.deb ... Unpacking r-cran-ggplot2 (3.4.0+dfsg-1) over (3.3.6+dfsg-1) ... Preparing to unpack .../17-r-cran-matrix_1.5-3-1_amd64.deb ... Unpacking r-cran-matrix (1.5-3-1) over (1.5-1-1) ... Preparing to unpack .../18-r-cran-xml_3.99-0.13-1_amd64.deb ... Unpacking r-cran-xml (3.99-0.13-1) over (3.99-0.12-1) ... Preparing to unpack .../19-rpcsvc-proto_1.4.3-1_amd64.deb ... Unpacking rpcsvc-proto (1.4.3-1) over (1.4.2-4) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-3) ... Setting up libpython3-dev:amd64 (3.10.6-3) ... Setting up libpython3.11:amd64 (3.11.0-3) ... Setting up r-cran-ggplot2 (3.4.0+dfsg-1) ... Setting up linux-libc-dev:amd64 (6.0.10-2) ... Setting up libjbig0:amd64 (2.1-6) ... Setting up libblas3:amd64 (3.11.0-2) ... Setting up rpcsvc-proto (1.4.3-1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up r-cran-matrix (1.5-3-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up r-cran-xml (3.99-0.13-1) ... Setting up libopenblas0:amd64 (0.3.21+ds-3) ... Setting up git-man (1:2.38.1-1) ... Setting up libpython3-stdlib:amd64 (3.10.6-3) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... Setting up python3 (3.10.6-3) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-roman (3.3-3) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-3) ... Setting up libpython3.11-dev:amd64 (3.11.0-3) ... Setting up libpython3-all-dev:amd64 (3.10.6-3) ... Setting up python3-dev (3.10.6-3) ... Setting up git (1:2.38.1-1) ... Setting up python3-biopython (1.80+dfsg-2) ... Setting up python3-cffi-backend:amd64 (1.15.1-4) ... Setting up python3-colorama (0.4.6-2) ... Setting up python3.11-dev (3.11.0-3) ... Setting up python3-all (3.10.6-3) ... Setting up python3-all-dev (3.10.6-3) ... Processing triggers for libc-bin (2.36-6) ... 4m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', '-yf', 'dist-upgrade'] 4m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 4m3.7s DUMP: 93dc1af4a084007fcc057eccd4d608a6 - 4m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 4m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 4m3.9s DUMP: Package: qcumber Version: 2.3.0-2 Installed-Size: 236 Maintainer: Debian Med Packaging Team Architecture: all Replaces: qc-pipeline Provides: qc-pipeline Depends: python3:any, debconf (>= 0.5) | debconf-2.0, python3-jinja2, python3-matplotlib, python3-biopython, libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake Conflicts: qc-pipeline Description-en: quality control of genomic sequences QCPipeline is a tool for quality control. The workflow is as follows: . 1. Quality control with FastQC 2. Trim Reads with Trimmomatic 3. Quality control of trimmed reads with FastQC 4. Map reads against reference using bowtie2 5. Classify reads with Kraken Description-md5: 380ba80499911de0a248a18cb1009872 Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber Section: science Priority: optional Filename: pool/main/q/qcumber/qcumber_2.3.0-2_all.deb Size: 50488 MD5sum: e8e75d1efdd4265bdbe9e121b7109314 SHA256: 033afeb7358c5e35109c648bbc275842755dc14c328f84007af5a389c06501cb 4m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 4m3.9s INFO: apt-cache knows about the following packages: qcumber 4m3.9s INFO: Running scripts pre_install 4m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_database-server'] 4m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_database-server'] 4m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_exceptions'] 4m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_exceptions'] 4m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_extras'] 4m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_extras'] 4m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_foreign_architecture'] 4m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_foreign_architecture'] 4m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'policy'] 4m4.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 4m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'policy'] 4m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'policy', 'qcumber'] 4m4.1s DUMP: qcumber: Installed: 2.3.0-2 Candidate: 2.3.0-2 Version table: *** 2.3.0-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 4m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'policy', 'qcumber'] 4m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', '-y', 'install', 'qcumber'] 4m4.5s DUMP: Reading package lists... Building dependency tree... Reading state information... qcumber is already the newest version (2.3.0-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', '-y', 'install', 'qcumber'] 4m4.5s INFO: Running scripts post_install 4m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_install_exceptions'] 4m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_install_exceptions'] 4m4.5s INFO: Running scripts post_distupgrade 4m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_distupgrade_base_cleanup'] 4m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_distupgrade_base_cleanup'] 4m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_distupgrade_exceptions'] 4m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_distupgrade_exceptions'] 4m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 4m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 4m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_distupgrade_squeeze-backports'] 4m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_distupgrade_squeeze-backports'] 4m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_distupgrade_zz_backports'] 4m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_distupgrade_zz_backports'] 4m4.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 4m8.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 4m8.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 4m11.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 4m11.7s INFO: Running scripts pre_install 4m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_database-server'] 4m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_database-server'] 4m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_exceptions'] 4m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_exceptions'] 4m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_extras'] 4m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_extras'] 4m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_foreign_architecture'] 4m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_foreign_architecture'] 4m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'policy'] 4m11.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 4m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'policy'] 4m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'policy', 'qcumber'] 4m11.8s DUMP: qcumber: Installed: 2.3.0-2 Candidate: 2.3.0-2 Version table: *** 2.3.0-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 4m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-cache', 'policy', 'qcumber'] 4m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', '-y', 'install', 'qcumber=2.3.0-2'] 4m12.3s DUMP: Reading package lists... Building dependency tree... Reading state information... qcumber is already the newest version (2.3.0-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', '-y', 'install', 'qcumber=2.3.0-2'] 4m12.3s INFO: Running scripts post_install 4m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_install_exceptions'] 4m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_install_exceptions'] 4m12.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 4m15.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 4m20.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', '-ac', '--ignore-obsolete'] 4m30.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', '-ac', '--ignore-obsolete'] 4m30.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 4m30.0s DUMP: 0.15.6 4m30.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 4m30.0s INFO: Running adequate version 0.15.6 now. 4m30.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'qcumber'] 4m30.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'qcumber'] 4m30.1s INFO: Running scripts pre_remove 4m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 4m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 4m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 4m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 4m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 4m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 4m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 4m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 4m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 4m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 4m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_remove_exceptions'] 4m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/pre_remove_exceptions'] 4m39.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 4m39.6s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed binutils binutils 2.39-8 install ok installed binutils-common:amd64 binutils-common 2.39-8 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.39-8 install ok installed blt blt 2.5.3+dfsg-4.1 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed ca-certificates ca-certificates 20211016 install ok installed coinor-cbc coinor-cbc 2.10.8+ds1-1 install ok installed coinor-libcbc3:amd64 coinor-libcbc3 2.10.8+ds1-1 install ok installed coinor-libcgl1:amd64 coinor-libcgl1 0.60.3+repack1-4 install ok installed coinor-libclp1:amd64 coinor-libclp1 1.17.6-3 install ok installed coinor-libcoinutils3v5:amd64 coinor-libcoinutils3v5 2.11.4+repack1-2 install ok installed coinor-libosi1v5:amd64 coinor-libosi1v5 0.108.6+repack1-2 install ok installed coreutils coreutils 9.1-1 install ok installed cpp cpp 4:12.2.0-1 install ok installed cpp-12 cpp-12 12.2.0-9 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.80 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-1 install ok installed docutils-common docutils-common 0.17.1+dfsg-3 install ok installed dpkg dpkg 1.21.11 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed fontconfig fontconfig 2.13.1-4.5 install ok installed fontconfig-config fontconfig-config 2.13.1-4.5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-2 install ok installed fonts-lyx fonts-lyx 2.3.6.1-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-6 install ok installed g++ g++ 4:12.2.0-1 install ok installed g++-12 g++-12 12.2.0-9 install ok installed gcc gcc 4:12.2.0-1 install ok installed gcc-12 gcc-12 12.2.0-9 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-9 install ok installed gir1.2-glib-2.0:amd64 gir1.2-glib-2.0 1.74.0-2 install ok installed git git 1:2.38.1-1 install ok installed git-man git-man 1:2.38.1-1 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libasan8:amd64 libasan8 12.2.0-9 install ok installed libatomic1:amd64 libatomic1 12.2.0-9 install ok installed libattr1:amd64 libattr1 1:2.5.1-3 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libbinutils:amd64 libbinutils 2.39-8 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0-17+b2 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b5 install ok installed libbsd0:amd64 libbsd0 0.11.7-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-6 install ok installed libc-dev-bin libc-dev-bin 2.36-6 install ok installed libc6:amd64 libc6 2.36-6 install ok installed libc6-dev:amd64 libc6-dev 2.36-6 install ok installed libcairo2:amd64 libcairo2 1.16.0-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcc1-0:amd64 libcc1-0 12.2.0-9 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.33-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.39-8 install ok installed libctf0:amd64 libctf0 2.39-8 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.86.0-2 install ok installed libcurl4:amd64 libcurl4 7.86.0-2 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-2+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed liberror-perl liberror-perl 0.17029-2 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.5 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.4-1 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.2.0-9 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-9 install ok installed libgirepository-1.0-1:amd64 libgirepository-1.0-1 1.74.0-2 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.2-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgomp1:amd64 libgomp1 12.2.0-9 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgprofng0:amd64 libgprofng0 2.39-8 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 5.2.0-2+b1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libimagequant0:amd64 libimagequant0 2.17.0-1 install ok installed libisl23:amd64 libisl23 0.25-1 install ok installed libitm1:amd64 libitm1 12.2.0-9 install ok installed libjbig0:amd64 libjbig0 2.1-6 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.2-1+b1 install ok installed libjs-angularjs libjs-angularjs 1.8.2-2 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-2 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 4.5.0-4 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-1 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.3-11 install ok installed liblcms2-2:amd64 liblcms2-2 2.13.1-1+b1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-2+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-2 install ok installed liblsan0:amd64 liblsan0 12.2.0-9 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.9-0.0 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libmpc3:amd64 libmpc3 1.2.1-2 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libmpfr6:amd64 libmpfr6 4.1.0-3 install ok installed libncursesw6:amd64 libncursesw6 6.3+20220423-2 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.50.0-1+b1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.21+ds-3 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.21+ds-3 install ok installed libopenblas0:amd64 libopenblas0 0.3.21+ds-3 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.21+ds-3 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.50.10+ds-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.50.10+ds-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.50.10+ds-1 install ok installed libpaper-utils libpaper-utils 1.1.28+b1 install ok installed libpaper1:amd64 libpaper1 1.1.28+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-3 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-4 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.39-2 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.10.6-3 install ok installed libpython3-dev:amd64 libpython3-dev 3.10.6-3 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.10.6-3 install ok installed libpython3.10:amd64 libpython3.10 3.10.8-3 install ok installed libpython3.10-dev:amd64 libpython3.10-dev 3.10.8-3 install ok installed libpython3.10-minimal:amd64 libpython3.10-minimal 3.10.8-3 install ok installed libpython3.10-stdlib:amd64 libpython3.10-stdlib 3.10.8-3 install ok installed libpython3.11:amd64 libpython3.11 3.11.0-3 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.0-3 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.0-3 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.0-3 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-5 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-9 install ok installed libraqm0:amd64 libraqm0 0.7.0-4 install ok installed libreadline8:amd64 libreadline8 8.2-1.2 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b3 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b3 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libsodium23:amd64 libsodium23 1.0.18-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.0-1 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.7-1 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.2.0-9 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 252.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.13+dfsg-1 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libthai-data libthai-data 0.1.29-1 install ok installed libthai0:amd64 libthai0 0.1.29-1 install ok installed libtiff5:amd64 libtiff5 4.4.0-6 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.13-1 install ok installed libtsan2:amd64 libtsan2 12.2.0-9 install ok installed libubsan1:amd64 libubsan1 12.2.0-9 install ok installed libudev1:amd64 libudev1 252.2-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libwebp7:amd64 libwebp7 1.2.2-2+b2 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.2.2-2+b2 install ok installed libwebpmux3:amd64 libwebpmux3 1.2.2-2+b2 install ok installed libx11-6:amd64 libx11-6 2:1.8.1-2 install ok installed libx11-data libx11-data 2:1.8.1-2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.1+b2 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxsimd-dev:amd64 libxsimd-dev 8.1.0-7 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.2.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed linux-libc-dev:amd64 linux-libc-dev 6.0.10-2 install ok installed littler littler 0.3.17-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 8.0.0 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed openssl openssl 3.0.7-1 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-4 install ok installed perl-base perl-base 5.36.0-4 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-4 install ok installed python-matplotlib-data python-matplotlib-data 3.5.2-4 install ok installed python3 python3 3.10.6-3 install ok installed python3-adal python3-adal 1.2.7-2 install ok installed python3-aiohttp python3-aiohttp 3.8.3-1+b1 install ok installed python3-aiosignal python3-aiosignal 1.3.1-1 install ok installed python3-all python3-all 3.10.6-3 install ok installed python3-all-dev python3-all-dev 3.10.6-3 install ok installed python3-appdirs python3-appdirs 1.4.4-3 install ok installed python3-async-timeout python3-async-timeout 4.0.2-1 install ok installed python3-attr python3-attr 22.1.0-1 install ok installed python3-avro python3-avro 1.11.1+dfsg-1 install ok installed python3-azure python3-azure 20221101+git-1 install ok installed python3-azure-storage python3-azure-storage 20221101+git-1 install ok installed python3-bcrypt python3-bcrypt 3.2.0-1+b2 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-biopython python3-biopython 1.80+dfsg-2 install ok installed python3-blinker python3-blinker 1.5-1 install ok installed python3-boto3 python3-boto3 1.23.8+dfsg-1 install ok installed python3-botocore python3-botocore 1.26.8+repack-1 install ok installed python3-brotli python3-brotli 1.0.9-2+b5 install ok installed python3-certifi python3-certifi 2022.9.24-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.15.1-4 install ok installed python3-chardet python3-chardet 4.0.0-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.0.1-2 install ok installed python3-colorama python3-colorama 0.4.6-2 install ok installed python3-configargparse python3-configargparse 1.5.3-1 install ok installed python3-connection-pool python3-connection-pool 0.0.3-2 install ok installed python3-cryptography python3-cryptography 3.4.8-2 install ok installed python3-cycler python3-cycler 0.11.0-1 install ok installed python3-dateutil python3-dateutil 2.8.2-1 install ok installed python3-datrie:amd64 python3-datrie 0.8.2-3+b1 install ok installed python3-decorator python3-decorator 5.1.1-2 install ok installed python3-dev python3-dev 3.10.6-3 install ok installed python3-distutils python3-distutils 3.10.8-1 install ok installed python3-docutils python3-docutils 0.17.1+dfsg-3 install ok installed python3-fastjsonschema python3-fastjsonschema 2.15.1-3 install ok installed python3-fonttools python3-fonttools 4.37.4-1+b1 install ok installed python3-frozenlist python3-frozenlist 1.3.3-1 install ok installed python3-fs python3-fs 2.4.16-2 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-gi python3-gi 3.42.2-3 install ok installed python3-git python3-git 3.1.27-1 install ok installed python3-gitdb python3-gitdb 4.0.9-2 install ok installed python3-idna python3-idna 3.3-1 install ok installed python3-isodate python3-isodate 0.6.1-1 install ok installed python3-jinja2 python3-jinja2 3.0.3-2 install ok installed python3-jmespath python3-jmespath 1.0.1-1 install ok installed python3-jsonschema python3-jsonschema 4.7.2-3 install ok installed python3-jupyter-core python3-jupyter-core 4.11.2-1 install ok installed python3-jwt python3-jwt 2.4.0-2 install ok installed python3-kiwisolver python3-kiwisolver 1.3.2-1+b3 install ok installed python3-lib2to3 python3-lib2to3 3.10.8-1 install ok installed python3-lxml:amd64 python3-lxml 4.9.1-1+b2 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b1 install ok installed python3-markupsafe python3-markupsafe 2.1.1-1+b1 install ok installed python3-marshmallow python3-marshmallow 3.18.0-1 install ok installed python3-matplotlib python3-matplotlib 3.5.2-4 install ok installed python3-minimal python3-minimal 3.10.6-3 install ok installed python3-mpmath python3-mpmath 1.2.1-2 install ok installed python3-msal python3-msal 1.20.0-1 install ok installed python3-msal-extensions python3-msal-extensions 1.0.0-2 install ok installed python3-msrest python3-msrest 0.6.21-2 install ok installed python3-msrestazure python3-msrestazure 0.6.4-2 install ok installed python3-multidict python3-multidict 6.0.2-1+b1 install ok installed python3-nacl python3-nacl 1.5.0-2 install ok installed python3-nbformat python3-nbformat 5.5.0-1 install ok installed python3-numpy python3-numpy 1:1.21.5-2 install ok installed python3-oauthlib python3-oauthlib 3.2.1-2 install ok installed python3-packaging python3-packaging 21.3-1.1 install ok installed python3-paramiko python3-paramiko 2.10.4-1 install ok installed python3-pil:amd64 python3-pil 9.2.0-1.1+b1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 9.2.0-1.1+b1 install ok installed python3-pkg-resources python3-pkg-resources 65.5.0-1 install ok installed python3-ply python3-ply 3.11-5 install ok installed python3-portalocker python3-portalocker 2.2.1-1 install ok installed python3-psutil python3-psutil 5.9.2-1+b1 install ok installed python3-pulp python3-pulp 2.6.0+dfsg-1 install ok installed python3-pyparsing python3-pyparsing 3.0.7-3 install ok installed python3-pyrsistent:amd64 python3-pyrsistent 0.18.1-1+b2 install ok installed python3-pythran python3-pythran 0.11.0+ds-7 install ok installed python3-ratelimiter python3-ratelimiter 1.2.0.post0-3 install ok installed python3-renderpm:amd64 python3-renderpm 3.6.11-1+b1 install ok installed python3-reportlab python3-reportlab 3.6.11-1 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.6.11-1+b1 install ok installed python3-requests python3-requests 2.28.1+dfsg-1 install ok installed python3-requests-oauthlib python3-requests-oauthlib 1.3.0+ds-0.1 install ok installed python3-roman python3-roman 3.3-3 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.17.16-1 install ok installed python3-ruamel.yaml.clib:amd64 python3-ruamel.yaml.clib 0.2.7-1+b1 install ok installed python3-s3transfer python3-s3transfer 0.6.0-1 install ok installed python3-scipy python3-scipy 1.8.1-14+b1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-smart-open python3-smart-open 5.2.1-5 install ok installed python3-smmap python3-smmap 5.0.0-1 install ok installed python3-stopit python3-stopit 1.1.2-2 install ok installed python3-strictyaml python3-strictyaml 1.6.1-2 install ok installed python3-sympy python3-sympy 1.11.1-1 install ok installed python3-tabulate python3-tabulate 0.8.9-1 install ok installed python3-tk:amd64 python3-tk 3.10.8-1 install ok installed python3-toposort python3-toposort 1.7-1 install ok installed python3-tqdm python3-tqdm 4.64.0-2 install ok installed python3-traitlets python3-traitlets 5.5.0-1 install ok installed python3-typing-extensions python3-typing-extensions 4.3.0-2 install ok installed python3-tz python3-tz 2022.6-1 install ok installed python3-uamqp python3-uamqp 1.5.3-1+b3 install ok installed python3-ufolib2 python3-ufolib2 0.13.1+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 14.0.0+ds2-1+b1 install ok installed python3-urllib3 python3-urllib3 1.26.12-1 install ok installed python3-wrapt python3-wrapt 1.14.1-2+b1 install ok installed python3-yaml python3-yaml 6.0-3+b1 install ok installed python3-yarl python3-yarl 1.8.1-1+b1 install ok installed python3.10 python3.10 3.10.8-3 install ok installed python3.10-dev python3.10-dev 3.10.8-3 install ok installed python3.10-minimal python3.10-minimal 3.10.8-3 install ok installed python3.11 python3.11 3.11.0-3 install ok installed python3.11-dev python3.11-dev 3.11.0-3 install ok installed python3.11-minimal python3.11-minimal 3.11.0-3 install ok installed qcumber qcumber 2.3.0-2 install ok installed r-base-core r-base-core 4.2.2.20221110-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.44.0-2 install ok installed r-bioc-savr r-bioc-savr 1.36.0-2 install ok installed r-cran-caret r-cran-caret 6.0-93+dfsg-1 install ok installed r-cran-class r-cran-class 7.3-20-1 install ok installed r-cran-cli r-cran-cli 3.4.1-1 install ok installed r-cran-codetools r-cran-codetools 0.2-18-1 install ok installed r-cran-colorspace r-cran-colorspace 2.0-3+dfsg-1 install ok installed r-cran-conquer r-cran-conquer 1.3.1-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.4.3-1 install ok installed r-cran-data.table r-cran-data.table 1.14.6+dfsg-1 install ok installed r-cran-digest r-cran-digest 0.6.30-2 install ok installed r-cran-dplyr r-cran-dplyr 1.0.10-1 install ok installed r-cran-e1071 r-cran-e1071 1.7-12-1 install ok installed r-cran-ellipsis r-cran-ellipsis 0.3.2-2 install ok installed r-cran-fansi r-cran-fansi 1.0.3-1 install ok installed r-cran-farver r-cran-farver 2.1.1-1 install ok installed r-cran-foreach r-cran-foreach 1.5.2-1 install ok installed r-cran-future r-cran-future 1.29.0+dfsg-1 install ok installed r-cran-future.apply r-cran-future.apply 1.10.0+dfsg-1 install ok installed r-cran-generics r-cran-generics 0.1.3-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.4.0+dfsg-1 install ok installed r-cran-globals r-cran-globals 0.16.2-1 install ok installed r-cran-glue r-cran-glue 1.6.2-1 install ok installed r-cran-gower r-cran-gower 1.0.0-1 install ok installed r-cran-gridextra r-cran-gridextra 2.3-3 install ok installed r-cran-gtable r-cran-gtable 0.3.1+dfsg-1 install ok installed r-cran-hardhat r-cran-hardhat 1.2.0+dfsg-1 install ok installed r-cran-ipred r-cran-ipred 0.9-13-1 install ok installed r-cran-isoband r-cran-isoband 0.2.6-1 install ok installed r-cran-iterators r-cran-iterators 1.0.14-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-20-1 install ok installed r-cran-labeling r-cran-labeling 0.4.2-1 install ok installed r-cran-lattice r-cran-lattice 0.20-45-3 install ok installed r-cran-lava r-cran-lava 1.7.0+dfsg-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.3+dfsg-1 install ok installed r-cran-listenv r-cran-listenv 0.8.0+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.17-1 install ok installed r-cran-lubridate r-cran-lubridate 1.9.0+dfsg-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1 install ok installed r-cran-mass r-cran-mass 7.3-58.1-1 install ok installed r-cran-matrix r-cran-matrix 1.5-3-1 install ok installed r-cran-matrixmodels r-cran-matrixmodels 0.5-1-1 install ok installed r-cran-matrixstats r-cran-matrixstats 0.63.0-1 install ok installed r-cran-mgcv r-cran-mgcv 1.8-41-1 install ok installed r-cran-modelmetrics r-cran-modelmetrics 1.2.2.2-1+b1 install ok installed r-cran-munsell r-cran-munsell 0.5.0-2 install ok installed r-cran-nlme r-cran-nlme 3.1.160-1 install ok installed r-cran-nnet r-cran-nnet 7.3-18-1 install ok installed r-cran-numderiv r-cran-numderiv 2016.8-1.1-3 install ok installed r-cran-parallelly r-cran-parallelly 1.32.1-1 install ok installed r-cran-pillar r-cran-pillar 1.8.1+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.2-2 install ok installed r-cran-plyr r-cran-plyr 1.8.8-1 install ok installed r-cran-proc r-cran-proc 1.18.0-1+b1 install ok installed r-cran-prodlim r-cran-prodlim 2019.11.13-1+b1 install ok installed r-cran-progressr r-cran-progressr 0.11.0-1 install ok installed r-cran-proxy r-cran-proxy 0.4-27-1 install ok installed r-cran-purrr r-cran-purrr 0.3.5-1 install ok installed r-cran-quantreg r-cran-quantreg 5.94-1 install ok installed r-cran-r6 r-cran-r6 2.5.1-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-1 install ok installed r-cran-rcpp r-cran-rcpp 1.0.9-1 install ok installed r-cran-rcpparmadillo r-cran-rcpparmadillo 0.11.4.2.1-1 install ok installed r-cran-recipes r-cran-recipes 1.0.2+dfsg-1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.4-2 install ok installed r-cran-rlang r-cran-rlang 1.0.6-1 install ok installed r-cran-rpart r-cran-rpart 4.1.19-1 install ok installed r-cran-scales r-cran-scales 1.2.1-1 install ok installed r-cran-sparsem r-cran-sparsem 1.81-1 install ok installed r-cran-squarem r-cran-squarem 2021.1-1 install ok installed r-cran-stringi r-cran-stringi 1.7.8-1+b1 install ok installed r-cran-stringr r-cran-stringr 1.4.1-1 install ok installed r-cran-survival r-cran-survival 3.4-0-1 install ok installed r-cran-tibble r-cran-tibble 3.1.8+dfsg-1 install ok installed r-cran-tidyr r-cran-tidyr 1.2.1-1 install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.0+dfsg-1 install ok installed r-cran-timechange r-cran-timechange 0.1.1-3 install ok installed r-cran-timedate r-cran-timedate 4021.106-1 install ok installed r-cran-utf8 r-cran-utf8 1.2.2-1 install ok installed r-cran-vctrs r-cran-vctrs 0.5.1-1 install ok installed r-cran-viridislite r-cran-viridislite 0.4.1-1 install ok installed r-cran-withr r-cran-withr 2.5.0-1 install ok installed r-cran-xml r-cran-xml 3.99-0.13-1 install ok installed readline-common readline-common 8.2-1.2 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.8-1 install ok installed sensible-utils sensible-utils 0.0.17 install ok installed sgml-base sgml-base 1.31 install ok installed snakemake snakemake 7.12.1-1 install ok installed sysvinit-utils sysvinit-utils 3.05-7 install ok installed tar tar 1.34+dfsg-1.1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4.1 install ok installed tzdata tzdata 2022f-1 install ok installed ucf ucf 3.0043 install ok installed unicode-data unicode-data 15.0.0-1 install ok installed unzip unzip 6.0-27 install ok installed usr-is-merged usr-is-merged 33 install ok installed usrmerge usrmerge 33 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23 install ok installed xdg-utils xdg-utils 1.1.3-4.1 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.1 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zip zip 3.0-12 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.13.dfsg-1 4m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 4m39.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-12', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-angularjs', 'libjs-bootstrap', 'libjs-d3', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'media-types', 'openssl', 'python-matplotlib-data', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-beniget', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-docutils', 'python3-fastjsonschema', 'python3-fonttools', 'python3-frozenlist', 'python3-fs', 'python3-gast', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-marshmallow', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-numpy', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pythran', 'python3-ratelimiter', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-roman', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-scipy', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-sympy', 'python3-tabulate', 'python3-tk:amd64', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-typing-extensions', 'python3-tz', 'python3-uamqp', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-savr', 'r-cran-caret', 'r-cran-class', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-conquer', 'r-cran-cpp11', 'r-cran-data.table', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-e1071', 'r-cran-ellipsis', 'r-cran-fansi', 'r-cran-farver', 'r-cran-foreach', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-kernsmooth', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-modelmetrics', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-parallelly', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progressr', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-recipes', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-scales', 'r-cran-sparsem', 'r-cran-squarem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'snakemake', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'x11-common', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zip', 'zlib1g-dev:amd64', 'qcumber'] 5m35.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cpp cpp-12 docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 gir1.2-glib-2.0 git git-man libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libcurl4 libdatrie1 libdeflate0 liberror-perl libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu72 libimagequant0 libisl23 libitm1 libjbig0 libjpeg62-turbo libjs-angularjs libjs-bootstrap libjs-d3 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsodium23 libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxt6 libyaml-0-2 linux-libc-dev littler media-types openssl python-matplotlib-data python3 python3-adal python3-aiohttp python3-aiosignal python3-all python3-all-dev python3-appdirs python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-beniget python3-biopython python3-blinker python3-boto3 python3-botocore python3-brotli python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-colorama python3-configargparse python3-connection-pool python3-cryptography python3-cycler python3-dateutil python3-datrie python3-decorator python3-dev python3-distutils python3-docutils python3-fastjsonschema python3-fonttools python3-frozenlist python3-fs python3-gast python3-gi python3-git python3-gitdb python3-idna python3-isodate python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-markupsafe python3-marshmallow python3-matplotlib python3-minimal python3-mpmath python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-nbformat python3-numpy python3-oauthlib python3-packaging python3-paramiko python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-portalocker python3-psutil python3-pulp python3-pyparsing python3-pyrsistent python3-pythran python3-ratelimiter python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-requests-oauthlib python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-scipy python3-six python3-smart-open python3-smmap python3-stopit python3-strictyaml python3-sympy python3-tabulate python3-tk python3-toposort python3-tqdm python3-traitlets python3-typing-extensions python3-tz python3-uamqp python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wrapt python3-yaml python3-yarl python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal qcumber r-base-core r-bioc-biocgenerics r-bioc-savr r-cran-caret r-cran-class r-cran-cli r-cran-codetools r-cran-colorspace r-cran-conquer r-cran-cpp11 r-cran-data.table r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-foreach r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-ipred r-cran-isoband r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lava r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-modelmetrics r-cran-munsell r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proc r-cran-prodlim r-cran-progressr r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-recipes r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-scales r-cran-sparsem r-cran-squarem r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml readline-common rpcsvc-proto sensible-utils sgml-base snakemake tk8.6-blt2.5 ucf unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zip zlib1g-dev 0 upgraded, 0 newly installed, 383 to remove and 0 not upgraded. After this operation, 2019 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85198 files and directories currently installed.) Removing qcumber (2.3.0-2) ... Removing python3-matplotlib (3.5.2-4) ... Removing g++ (4:12.2.0-1) ... Removing gcc (4:12.2.0-1) ... Removing python3-biopython (1.80+dfsg-2) ... Removing python3-reportlab (3.6.11-1) ... Removing snakemake (7.12.1-1) ... Removing python3-smart-open (5.2.1-5) ... Removing python3-pulp (2.6.0+dfsg-1) ... Removing coinor-cbc (2.10.8+ds1-1) ... Removing coinor-libcbc3:amd64 (2.10.8+ds1-1) ... Removing coinor-libcgl1:amd64 (0.60.3+repack1-4) ... Removing coinor-libclp1:amd64 (1.17.6-3) ... Removing coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Removing coinor-libcoinutils3v5:amd64 (2.11.4+repack1-2) ... Removing cpp (4:12.2.0-1) ... Removing python3-docutils (0.17.1+dfsg-3) ... Removing docutils-common (0.17.1+dfsg-3) ... Removing r-cran-quantreg (5.94-1) ... Removing r-cran-conquer (1.3.1-1) ... Removing r-cran-caret (6.0-93+dfsg-1) ... Removing r-cran-recipes (1.0.2+dfsg-1) ... Removing r-cran-ipred (0.9-13-1) ... Removing r-cran-rpart (4.1.19-1) ... Removing r-cran-prodlim (2019.11.13-1+b1) ... Removing r-cran-matrixmodels (0.5-1-1) ... Removing r-bioc-savr (1.36.0-2) ... Removing r-cran-ggplot2 (3.4.0+dfsg-1) ... Removing r-cran-mgcv (1.8-41-1) ... Removing r-cran-reshape2 (1.4.4-2) ... Removing r-cran-scales (1.2.1-1) ... Removing r-cran-rcolorbrewer (1.1-3-1) ... Removing python-matplotlib-data (3.5.2-4) ... Removing fonts-dejavu-core (2.37-2) ... Removing libjs-bootstrap (3.4.1+dfsg-2) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... dpkg: warning: while removing fonts-glyphicons-halflings, directory '/usr/share/fonts/truetype/glyphicons' not empty so not removed Removing fonts-lyx (2.3.6.1-1) ... dpkg: warning: while removing fonts-lyx, directory '/usr/share/fonts/truetype/lyx' not empty so not removed Removing python3-renderpm:amd64 (3.6.11-1+b1) ... Removing python3-git (3.1.27-1) ... Removing git (1:2.38.1-1) ... Removing git-man (1:2.38.1-1) ... Removing r-cran-rcpparmadillo (0.11.4.2.1-1) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing libcurl3-gnutls:amd64 (7.86.0-2) ... Removing python3-datrie:amd64 (0.8.2-3+b1) ... Removing liberror-perl (0.17029-2) ... Removing libopenblas-dev:amd64 (0.3.21+ds-3) ... Removing libopenblas0:amd64 (0.3.21+ds-3) ... Removing r-cran-kernsmooth (2.23-20-1) ... Removing r-cran-gower (1.0.0-1) ... Removing r-cran-modelmetrics (1.2.2.2-1+b1) ... Removing r-cran-data.table (1.14.6+dfsg-1) ... Removing r-cran-stringr (1.4.1-1) ... Removing r-cran-stringi (1.7.8-1+b1) ... Removing r-cran-xml (3.99-0.13-1) ... Removing libjs-angularjs (1.8.2-2) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing python3-nbformat (5.5.0-1) ... Removing python3-jupyter-core (4.11.2-1) ... Removing python3-traitlets (5.5.0-1) ... Removing libqhull-r8.0:amd64 (2020.2-5) ... Removing python3-paramiko (2.10.4-1) ... Removing python3-nacl (1.5.0-2) ... Removing libsodium23:amd64 (1.0.18-1) ... Removing littler (0.3.17-1) ... Removing python3-bcrypt (3.2.0-1+b2) ... Removing python3-boto3 (1.23.8+dfsg-1) ... Removing python3-s3transfer (0.6.0-1) ... Removing python3-botocore (1.26.8+repack-1) ... Removing python3-configargparse (1.5.3-1) ... Removing python3-connection-pool (0.0.3-2) ... Removing python3-cycler (0.11.0-1) ... Removing python3-fastjsonschema (2.15.1-3) ... Removing python3-gitdb (4.0.9-2) ... Removing python3-jinja2 (3.0.3-2) ... Removing python3-jmespath (1.0.1-1) ... Removing python3-kiwisolver (1.3.2-1+b3) ... Removing python3-markupsafe (2.1.1-1+b1) ... Removing python3-stopit (1.1.2-2) ... Removing python3-psutil (5.9.2-1+b1) ... Removing python3-ratelimiter (1.2.0.post0-3) ... Removing python3-reportlab-accel:amd64 (3.6.11-1+b1) ... Removing python3-roman (3.3-3) ... Removing python3-wrapt (1.14.1-2+b1) ... Removing python3-smmap (5.0.0-1) ... Removing python3-tabulate (0.8.9-1) ... Removing python3-toposort (1.7-1) ... Removing r-bioc-biocgenerics (0.44.0-2) ... Removing r-cran-e1071 (1.7-12-1) ... Removing r-cran-class (7.3-20-1) ... Removing r-cran-tidyr (1.2.1-1) ... Removing r-cran-dplyr (1.0.10-1) ... Removing r-cran-tidyselect (1.2.0+dfsg-1) ... Removing r-cran-hardhat (1.2.0+dfsg-1) ... Removing r-cran-tibble (3.1.8+dfsg-1) ... Removing r-cran-lava (1.7.0+dfsg-1) ... Removing r-cran-future.apply (1.10.0+dfsg-1) ... Removing r-cran-future (1.29.0+dfsg-1) ... Removing r-cran-globals (0.16.2-1) ... Removing r-cran-foreach (1.5.2-1) ... Removing r-cran-codetools (0.2-18-1) ... Removing r-cran-munsell (0.5.0-2) ... Removing r-cran-colorspace (2.0-3+dfsg-1) ... Removing r-cran-lubridate (1.9.0+dfsg-1) ... Removing r-cran-timechange (0.1.1-3) ... Removing r-cran-cpp11 (0.4.3-1) ... Removing r-cran-progressr (0.11.0-1) ... Removing r-cran-digest (0.6.30-2) ... Removing r-cran-ellipsis (0.3.2-2) ... Removing r-cran-pillar (1.8.1+dfsg-1) ... Removing r-cran-fansi (1.0.3-1) ... Removing r-cran-farver (2.1.1-1) ... Removing r-cran-generics (0.1.3-1) ... Removing r-cran-gridextra (2.3-3) ... Removing r-cran-gtable (0.3.1+dfsg-1) ... Removing r-cran-isoband (0.2.6-1) ... Removing r-cran-iterators (1.0.14-1) ... Removing r-cran-labeling (0.4.2-1) ... Removing r-cran-nlme (3.1.160-1) ... Removing r-cran-listenv (0.8.0+dfsg-1) ... Removing r-cran-purrr (0.3.5-1) ... Removing r-cran-magrittr (2.0.3-1) ... Removing r-cran-mass (7.3-58.1-1) ... Removing r-cran-matrixstats (0.63.0-1) ... Removing r-cran-nnet (7.3-18-1) ... Removing r-cran-numderiv (2016.8-1.1-3) ... Removing r-cran-parallelly (1.32.1-1) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-proc (1.18.0-1+b1) ... Removing r-cran-plyr (1.8.8-1) ... Removing r-cran-proxy (0.4-27-1) ... Removing r-cran-r6 (2.5.1-1) ... Removing r-cran-sparsem (1.81-1) ... Removing r-cran-squarem (2021.1-1) ... Removing r-cran-timedate (4021.106-1) ... Removing r-cran-utf8 (1.2.2-1) ... Removing r-cran-viridislite (0.4.1-1) ... Removing r-cran-withr (2.5.0-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.31) ... Removing r-cran-survival (3.4-0-1) ... Removing r-cran-matrix (1.5-3-1) ... Removing r-cran-rcpp (1.0.9-1) ... Removing r-cran-vctrs (0.5.1-1) ... Removing r-cran-lifecycle (1.0.3+dfsg-1) ... Removing r-cran-cli (3.4.1-1) ... Removing r-cran-glue (1.6.2-1) ... Removing r-cran-lattice (0.20-45-3) ... Removing r-cran-littler (0.3.17-1) ... Removing r-cran-pkgkitten (0.2.2-2) ... Removing r-cran-rlang (1.0.6-1) ... Removing r-base-core (4.2.2.20221110-1) ... Removing libpangocairo-1.0-0:amd64 (1.50.10+ds-1) ... Removing libpangoft2-1.0-0:amd64 (1.50.10+ds-1) ... Removing libpango-1.0-0:amd64 (1.50.10+ds-1) ... Removing fontconfig (2.13.1-4.5) ... Removing libcairo2:amd64 (1.16.0-6) ... Removing libcurl4:amd64 (7.86.0-2) ... Removing libxt6:amd64 (1:1.2.1-1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libthai0:amd64 (0.1.29-1) ... Removing libdatrie1:amd64 (0.2.13-2+b1) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-2+b1) ... Removing libnghttp2-14:amd64 (1.50.0-1+b1) ... Removing libpaper-utils (1.1.28+b1) ... Removing libpaper1:amd64 (1.1.28+b1) ... Removing libpixman-1-0:amd64 (0.42.2-1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing libthai-data (0.1.29-1) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing unzip (6.0-27) ... Removing xdg-utils (1.1.3-4.1) ... Removing zip (3.0-12) ... Removing python3-pil:amd64 (9.2.0-1.1+b1) ... Removing python3-azure (20221101+git-1) ... Removing python3-msal-extensions (1.0.0-2) ... Removing python3-gi (3.42.2-3) ... Removing gir1.2-glib-2.0:amd64 (1.74.0-2) ... Removing libraqm0:amd64 (0.7.0-4) ... Removing libtiff5:amd64 (4.4.0-6) ... Removing libdeflate0:amd64 (1.14-1) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing libgirepository-1.0-1:amd64 (1.74.0-2) ... Removing libharfbuzz0b:amd64 (5.2.0-2+b1) ... Removing libglib2.0-0:amd64 (2.74.2-1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libimagequant0:amd64 (2.17.0-1) ... Removing libjbig0:amd64 (2.1-6) ... Removing libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Removing liblcms2-2:amd64 (2.13.1-1+b1) ... Removing liblerc4:amd64 (4.0.0+ds-2) ... Removing libopenjp2-7:amd64 (2.5.0-1) ... Removing python3-aiohttp (3.8.3-1+b1) ... Removing python3-yarl (1.8.1-1+b1) ... Removing python3-tqdm (4.64.0-2) ... Removing python3-msrestazure (0.6.4-2) ... Removing python3-msrest (0.6.21-2) ... Removing python3-requests-oauthlib (1.3.0+ds-0.1) ... Removing python3-oauthlib (3.2.1-2) ... Removing libwebpmux3:amd64 (1.2.2-2+b2) ... Removing libwebpdemux2:amd64 (1.2.2-2+b2) ... Removing libwebp7:amd64 (1.2.2-2+b2) ... Removing python3-yaml (6.0-3+b1) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing python3-adal (1.2.7-2) ... Removing python3-aiosignal (1.3.1-1) ... Removing python3-async-timeout (4.0.2-1) ... Removing python3-jsonschema (4.7.2-3) ... Removing python3-avro (1.11.1+dfsg-1) ... Removing python3-blinker (1.5-1) ... Removing python3-msal (1.20.0-1) ... Removing python3-uamqp (1.5.3-1+b3) ... Removing python3-colorama (0.4.6-2) ... Removing python3-strictyaml (1.6.1-2) ... Removing python3-dateutil (2.8.2-1) ... Removing python3-frozenlist (1.3.3-1) ... Removing python3-jwt (2.4.0-2) ... Removing python3-marshmallow (3.18.0-1) ... Removing python3-multidict (6.0.2-1+b1) ... Removing python3-packaging (21.3-1.1) ... Removing python3-portalocker (2.2.1-1) ... Removing python3-pyparsing (3.0.7-3) ... Removing python3-pyrsistent:amd64 (0.18.1-1+b2) ... Removing python3-ruamel.yaml (0.17.16-1) ... Removing python3-ruamel.yaml.clib:amd64 (0.2.7-1+b1) ... Removing python3-fonttools (4.37.4-1+b1) ... Removing python3-ufolib2 (0.13.1+dfsg1-1) ... Removing python3-scipy (1.8.1-14+b1) ... Removing python3-pythran (0.11.0+ds-7) ... Removing python3-pil.imagetk:amd64 (9.2.0-1.1+b1) ... Removing python3-tk:amd64 (3.10.8-1) ... Removing blt (2.5.3+dfsg-4.1) ... Removing python3-requests (2.28.1+dfsg-1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Removing libtk8.6:amd64 (8.6.13-1) ... Removing libxft2:amd64 (2.3.6-1) ... Removing libfontconfig1:amd64 (2.13.1-4.5) ... Removing fontconfig-config (2.13.1-4.5) ... Removing fonts-urw-base35 (20200910-6) ... Removing g++-12 (12.2.0-9) ... Removing python3-azure-storage (20221101+git-1) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0-17+b2) ... Removing libstdc++-12-dev:amd64 (12.2.0-9) ... Removing python3-numpy (1:1.21.5-2) ... Removing liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Removing xfonts-utils (1:7.7+6) ... Removing libfreetype6:amd64 (2.12.1+dfsg-3) ... Removing libbrotli1:amd64 (1.0.9-2+b5) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing python3-all-dev (3.10.6-3) ... Removing python3.11-dev (3.11.0-3) ... Removing libpython3-all-dev:amd64 (3.10.6-3) ... Removing libpython3.11-dev:amd64 (3.11.0-3) ... Removing python3-dev (3.10.6-3) ... Removing python3.10-dev (3.10.8-3) ... Removing python3-all (3.10.6-3) ... Removing python3.11 (3.11.0-3) ... Removing python3.11-minimal (3.11.0-3) ... Removing libpython3.11:amd64 (3.11.0-3) ... Removing libfontenc1:amd64 (1:1.1.4-1) ... Removing libopenblas-pthread-dev:amd64 (0.3.21+ds-3) ... Removing libopenblas0-pthread:amd64 (0.3.21+ds-3) ... Removing libgfortran5:amd64 (12.2.0-9) ... Removing libpython3.11-stdlib:amd64 (3.11.0-3) ... Removing libjs-sphinxdoc (4.5.0-4) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-2) ... Removing libpng16-16:amd64 (1.6.39-2) ... Removing libpython3-dev:amd64 (3.10.6-3) ... Removing python3-distutils (3.10.8-1) ... Removing libpython3.11-minimal:amd64 (3.11.0-3) ... Removing python3-cryptography (3.4.8-2) ... Removing libtcl8.6:amd64 (8.6.13+dfsg-1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libxsimd-dev:amd64 (8.1.0-7) ... Removing python3-lxml:amd64 (4.9.1-1+b2) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing python3-fs (2.4.16-2) ... Removing python3-appdirs (1.4.4-3) ... Removing python3-attr (22.1.0-1) ... Removing python3-beniget (0.4.1-3) ... Removing python3-brotli (1.0.9-2+b5) ... Removing python3-certifi (2022.9.24-1) ... Removing python3-cffi-backend:amd64 (1.15.1-4) ... Removing python3-chardet (4.0.0-2) ... Removing python3-charset-normalizer (3.0.1-2) ... Removing python3-decorator (5.1.1-2) ... Removing python3-gast (0.5.2-2) ... Removing python3-idna (3.3-1) ... Removing python3-isodate (0.6.1-1) ... Removing python3-lib2to3 (3.10.8-1) ... Removing python3-lz4 (4.0.2+dfsg-1+b1) ... Removing python3-sympy (1.11.1-1) ... Removing python3-mpmath (1.2.1-2) ... Removing python3-pkg-resources (65.5.0-1) ... Removing python3-ply (3.11-5) ... Removing python3-urllib3 (1.26.12-1) ... Removing python3-six (1.16.0-4) ... Removing python3-typing-extensions (4.3.0-2) ... Removing python3-tz (2022.6-1) ... Removing python3-unicodedata2 (14.0.0+ds2-1+b1) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.17) ... Removing unicode-data (15.0.0-1) ... Removing xfonts-encodings (1:1.0.4-2.1) ... dpkg: warning: while removing xfonts-encodings, directory '/usr/share/fonts/X11/encodings/large' not empty so not removed Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing gcc-12 (12.2.0-9) ... Removing binutils (2.39-8) ... Removing binutils-x86-64-linux-gnu (2.39-8) ... Removing libgprofng0:amd64 (2.39-8) ... Removing libctf0:amd64 (2.39-8) ... Removing libbinutils:amd64 (2.39-8) ... Removing binutils-common:amd64 (2.39-8) ... Removing ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cpp-12 (12.2.0-9) ... Removing libgcc-12-dev:amd64 (12.2.0-9) ... Removing libasan8:amd64 (12.2.0-9) ... Removing libatomic1:amd64 (12.2.0-9) ... Removing libx11-6:amd64 (2:1.8.1-2) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.7-1) ... Removing libpython3.10-dev:amd64 (3.10.8-3) ... Removing zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Removing libexpat1-dev:amd64 (2.5.0-1) ... Removing libc6-dev:amd64 (2.36-6) ... Removing libc-dev-bin (2.36-6) ... Removing libcc1-0:amd64 (12.2.0-9) ... Removing libcrypt-dev:amd64 (1:4.4.33-1) ... Removing libctf-nobfd0:amd64 (2.39-8) ... Removing libgomp1:amd64 (12.2.0-9) ... Removing libpython3.10:amd64 (3.10.8-3) ... Removing libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Removing libicu72:amd64 (72.1-3) ... Removing libisl23:amd64 (0.25-1) ... Removing libitm1:amd64 (12.2.0-9) ... Removing liblsan0:amd64 (12.2.0-9) ... Removing libmpc3:amd64 (1.2.1-2) ... Removing libmpfr6:amd64 (4.1.0-3) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing python3 (3.10.6-3) ... Removing libpython3-stdlib:amd64 (3.10.6-3) ... Removing python3.10 (3.10.8-3) ... Removing python3-minimal (3.10.6-3) ... Removing python3.10-minimal (3.10.8-3) ... Removing libquadmath0:amd64 (12.2.0-9) ... Removing openssl (3.0.7-1) ... Removing libtirpc-dev:amd64 (1.3.3+ds-1) ... Removing libtsan2:amd64 (12.2.0-9) ... Removing libubsan1:amd64 (12.2.0-9) ... Removing libx11-data (2:1.8.1-2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing linux-libc-dev:amd64 (6.0.10-2) ... Removing rpcsvc-proto (1.4.3-1) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libpython3.10-stdlib:amd64 (3.10.8-3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-2) ... Removing libncursesw6:amd64 (6.3+20220423-2) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libpython3.10-minimal:amd64 (3.10.8-3) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-1.2) ... Removing libsqlite3-0:amd64 (3.40.0-1) ... Removing media-types (8.0.0) ... Removing readline-common (8.2-1.2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-1) ... Removing libkrb5-3:amd64 (1.20.1-1) ... Removing libk5crypto3:amd64 (1.20.1-1) ... Removing libkeyutils1:amd64 (1.6.3-1) ... Removing libkrb5support0:amd64 (1.20.1-1) ... Removing libssl3:amd64 (3.0.7-1) ... Removing libtirpc-common (1.3.3+ds-1) ... Processing triggers for libc-bin (2.36-6) ... 5m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-12', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-angularjs', 'libjs-bootstrap', 'libjs-d3', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'media-types', 'openssl', 'python-matplotlib-data', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-beniget', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-docutils', 'python3-fastjsonschema', 'python3-fonttools', 'python3-frozenlist', 'python3-fs', 'python3-gast', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-marshmallow', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-numpy', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pythran', 'python3-ratelimiter', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-roman', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-scipy', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-sympy', 'python3-tabulate', 'python3-tk:amd64', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-typing-extensions', 'python3-tz', 'python3-uamqp', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-savr', 'r-cran-caret', 'r-cran-class', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-conquer', 'r-cran-cpp11', 'r-cran-data.table', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-e1071', 'r-cran-ellipsis', 'r-cran-fansi', 'r-cran-farver', 'r-cran-foreach', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-kernsmooth', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-modelmetrics', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-parallelly', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progressr', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-recipes', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-scales', 'r-cran-sparsem', 'r-cran-squarem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'snakemake', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'x11-common', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zip', 'zlib1g-dev:amd64', 'qcumber'] 5m35.4s INFO: Running scripts post_remove 5m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_remove_exceptions'] 5m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_remove_exceptions'] 5m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-12', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'gcc', 'gcc-12', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-angularjs', 'libjs-bootstrap', 'libjs-d3', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'media-types', 'openssl', 'python-matplotlib-data', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-beniget', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-docutils', 'python3-fastjsonschema', 'python3-fonttools', 'python3-frozenlist', 'python3-fs', 'python3-gast', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-marshmallow', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-numpy', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pythran', 'python3-ratelimiter', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-roman', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-scipy', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-sympy', 'python3-tabulate', 'python3-tk:amd64', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-typing-extensions', 'python3-tz', 'python3-uamqp', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-savr', 'r-cran-caret', 'r-cran-class', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-conquer', 'r-cran-cpp11', 'r-cran-data.table', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-e1071', 'r-cran-ellipsis', 'r-cran-fansi', 'r-cran-farver', 'r-cran-foreach', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-kernsmooth', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-modelmetrics', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-parallelly', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progressr', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-recipes', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-scales', 'r-cran-sparsem', 'r-cran-squarem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'snakemake', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'x11-common', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zip', 'zlib1g-dev:amd64'] 5m36.3s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 8684 files and directories currently installed.) Purging configuration files for binutils-common:amd64 (2.39-8) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed Purging configuration files for ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove coinor-cbc which isn't installed dpkg: warning: ignoring request to remove coinor-libcbc3 which isn't installed dpkg: warning: ignoring request to remove coinor-libcgl1 which isn't installed dpkg: warning: ignoring request to remove coinor-libclp1 which isn't installed dpkg: warning: ignoring request to remove coinor-libcoinutils3v5 which isn't installed dpkg: warning: ignoring request to remove coinor-libosi1v5 which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-12 which isn't installed Purging configuration files for docutils-common (0.17.1+dfsg-3) ... Purging configuration files for fontconfig (2.13.1-4.5) ... Purging configuration files for fontconfig-config (2.13.1-4.5) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-6) ... dpkg: warning: while removing fonts-urw-base35, directory '/usr/share/fonts/type1/urw-base35' not empty so not removed dpkg: warning: while removing fonts-urw-base35, directory '/usr/share/fonts/opentype/urw-base35' not empty so not removed dpkg: warning: while removing fonts-urw-base35, directory '/usr/share/fonts/X11/Type1' not empty so not removed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove gir1.2-glib-2.0 which isn't installed Purging configuration files for git (1:2.38.1-1) ... dpkg: warning: ignoring request to remove git-man which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.74-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.33-1) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgirepository-1.0-1 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.74.2-1) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-angularjs which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-d3 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28+b1) ... dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.10 which isn't installed dpkg: warning: ignoring request to remove libpython3.10-dev which isn't installed Purging configuration files for libpython3.10-minimal:amd64 (3.10.8-3) ... dpkg: warning: ignoring request to remove libpython3.10-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.0-3) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsodium23 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed Purging configuration files for media-types (8.0.0) ... Purging configuration files for openssl (3.0.7-1) ... Purging configuration files for python-matplotlib-data (3.5.2-4) ... Purging configuration files for python3 (3.10.6-3) ... dpkg: warning: ignoring request to remove python3-adal which isn't installed dpkg: warning: ignoring request to remove python3-aiohttp which isn't installed dpkg: warning: ignoring request to remove python3-aiosignal which isn't installed dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-async-timeout which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-avro which isn't installed dpkg: warning: ignoring request to remove python3-azure which isn't installed dpkg: warning: ignoring request to remove python3-azure-storage which isn't installed dpkg: warning: ignoring request to remove python3-bcrypt which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-blinker which isn't installed dpkg: warning: ignoring request to remove python3-boto3 which isn't installed dpkg: warning: ignoring request to remove python3-botocore which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-configargparse which isn't installed dpkg: warning: ignoring request to remove python3-connection-pool which isn't installed dpkg: warning: ignoring request to remove python3-cryptography which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-datrie which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-docutils which isn't installed dpkg: warning: ignoring request to remove python3-fastjsonschema which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-frozenlist which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-gi which isn't installed dpkg: warning: ignoring request to remove python3-git which isn't installed dpkg: warning: ignoring request to remove python3-gitdb which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-jmespath which isn't installed Purging configuration files for python3-jsonschema (4.7.2-3) ... dpkg: warning: ignoring request to remove python3-jupyter-core which isn't installed dpkg: warning: ignoring request to remove python3-jwt which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-marshmallow which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-msal which isn't installed dpkg: warning: ignoring request to remove python3-msal-extensions which isn't installed dpkg: warning: ignoring request to remove python3-msrest which isn't installed dpkg: warning: ignoring request to remove python3-msrestazure which isn't installed dpkg: warning: ignoring request to remove python3-multidict which isn't installed dpkg: warning: ignoring request to remove python3-nacl which isn't installed dpkg: warning: ignoring request to remove python3-nbformat which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-oauthlib which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-paramiko which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-portalocker which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pulp which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pyrsistent which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-ratelimiter which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-requests-oauthlib which isn't installed dpkg: warning: ignoring request to remove python3-roman which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml.clib which isn't installed dpkg: warning: ignoring request to remove python3-s3transfer which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-smart-open which isn't installed dpkg: warning: ignoring request to remove python3-smmap which isn't installed dpkg: warning: ignoring request to remove python3-stopit which isn't installed dpkg: warning: ignoring request to remove python3-strictyaml which isn't installed Purging configuration files for python3-sympy (1.11.1-1) ... dpkg: warning: ignoring request to remove python3-tabulate which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-toposort which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-uamqp which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-yarl which isn't installed dpkg: warning: ignoring request to remove python3.10 which isn't installed dpkg: warning: ignoring request to remove python3.10-dev which isn't installed Purging configuration files for python3.10-minimal (3.10.8-3) ... dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.0-3) ... Purging configuration files for r-base-core (4.2.2.20221110-1) ... dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-savr which isn't installed dpkg: warning: ignoring request to remove r-cran-caret which isn't installed dpkg: warning: ignoring request to remove r-cran-class which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-conquer which isn't installed dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-e1071 which isn't installed dpkg: warning: ignoring request to remove r-cran-ellipsis which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-farver which isn't installed dpkg: warning: ignoring request to remove r-cran-foreach which isn't installed dpkg: warning: ignoring request to remove r-cran-future which isn't installed dpkg: warning: ignoring request to remove r-cran-future.apply which isn't installed dpkg: warning: ignoring request to remove r-cran-generics which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-globals which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gower which isn't installed dpkg: warning: ignoring request to remove r-cran-gridextra which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-hardhat which isn't installed dpkg: warning: ignoring request to remove r-cran-ipred which isn't installed dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed dpkg: warning: ignoring request to remove r-cran-iterators which isn't installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-lava which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-listenv which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-lubridate which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixmodels which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-modelmetrics which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-numderiv which isn't installed dpkg: warning: ignoring request to remove r-cran-parallelly which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-proc which isn't installed dpkg: warning: ignoring request to remove r-cran-prodlim which isn't installed dpkg: warning: ignoring request to remove r-cran-progressr which isn't installed dpkg: warning: ignoring request to remove r-cran-proxy which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-quantreg which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpparmadillo which isn't installed dpkg: warning: ignoring request to remove r-cran-recipes which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-sparsem which isn't installed dpkg: warning: ignoring request to remove r-cran-squarem which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-timechange which isn't installed dpkg: warning: ignoring request to remove r-cran-timedate which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed Purging configuration files for readline-common (8.2-1.2) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for sgml-base (1.31) ... dpkg: warning: ignoring request to remove snakemake which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed Purging configuration files for ucf (3.0043) ... dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for unzip (6.0-27) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... dpkg: warning: while removing xfonts-utils, directory '/usr/share/fonts/X11/util' not empty so not removed Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 5m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-12', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'gcc', 'gcc-12', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-angularjs', 'libjs-bootstrap', 'libjs-d3', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'media-types', 'openssl', 'python-matplotlib-data', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-beniget', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-docutils', 'python3-fastjsonschema', 'python3-fonttools', 'python3-frozenlist', 'python3-fs', 'python3-gast', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-marshmallow', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-numpy', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pythran', 'python3-ratelimiter', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-roman', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-scipy', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-sympy', 'python3-tabulate', 'python3-tk:amd64', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-typing-extensions', 'python3-tz', 'python3-uamqp', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-savr', 'r-cran-caret', 'r-cran-class', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-conquer', 'r-cran-cpp11', 'r-cran-data.table', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-e1071', 'r-cran-ellipsis', 'r-cran-fansi', 'r-cran-farver', 'r-cran-foreach', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-kernsmooth', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-modelmetrics', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-parallelly', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progressr', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-recipes', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-scales', 'r-cran-sparsem', 'r-cran-squarem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'snakemake', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'x11-common', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zip', 'zlib1g-dev:amd64'] 5m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg', '--purge', 'qcumber'] 5m36.4s DUMP: (Reading database ... 8606 files and directories currently installed.) Purging configuration files for qcumber (2.3.0-2) ... 5m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg', '--purge', 'qcumber'] 5m36.4s INFO: Running scripts post_purge 5m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_purge_exceptions'] 5m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_purge_exceptions'] 5m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg', '--purge', '--pending'] 5m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg', '--purge', '--pending'] 5m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg', '--remove', '--pending'] 5m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg', '--remove', '--pending'] 5m36.5s INFO: Running scripts post_test 5m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_test_exceptions'] 5m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'tmp/scripts/post_test_exceptions'] 5m36.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 5m36.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 5m36.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg-divert', '--list'] 5m36.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 5m36.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'dpkg-divert', '--list'] 5m36.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', 'clean'] 5m37.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzaihre7j', 'apt-get', 'clean'] 5m37.0s DEBUG: Recording chroot state 5m37.5s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-lyx, fonts-glyphicons-halflings, fonts-urw-base35, xfonts-utils, xfonts-encodings, fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/X11/ owned by: fonts-urw-base35, xfonts-utils, xfonts-encodings /usr/share/fonts/X11/.uuid not owned /usr/share/fonts/X11/Type1/ owned by: fonts-urw-base35 /usr/share/fonts/X11/Type1/.uuid not owned /usr/share/fonts/X11/encodings/ owned by: xfonts-encodings /usr/share/fonts/X11/encodings/.uuid not owned /usr/share/fonts/X11/encodings/large/ owned by: xfonts-encodings /usr/share/fonts/X11/encodings/large/.uuid not owned /usr/share/fonts/X11/util/ owned by: xfonts-utils /usr/share/fonts/X11/util/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-urw-base35 /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/urw-base35/ owned by: fonts-urw-base35 /usr/share/fonts/opentype/urw-base35/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-lyx, fonts-glyphicons-halflings, fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/glyphicons/ owned by: fonts-glyphicons-halflings /usr/share/fonts/truetype/glyphicons/.uuid not owned /usr/share/fonts/truetype/lyx/ owned by: fonts-lyx /usr/share/fonts/truetype/lyx/.uuid not owned /usr/share/fonts/type1/ owned by: fonts-urw-base35 /usr/share/fonts/type1/.uuid not owned /usr/share/fonts/type1/urw-base35/ owned by: fonts-urw-base35 /usr/share/fonts/type1/urw-base35/.uuid not owned 5m37.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/shm'] 5m37.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/shm'] 5m37.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/console'] 5m37.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/console'] 5m37.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/ptmx'] 5m37.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/ptmx'] 5m37.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/pts'] 5m37.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/dev/pts'] 5m37.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/proc'] 5m38.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzaihre7j/proc'] 5m38.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 5m38.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzaihre7j'] 5m38.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpzaihre7j 5m38.1s INFO: PASS: Upgrading between Debian distributions. 5m38.1s INFO: PASS: All tests. 5m38.1s INFO: piuparts run ends. ret=0 End: 2022-12-05 05:12:18 GMT