Start: 2025-01-12 16:11:34 GMT [testing] Package: r-bioc-rcwl Version: 1.20.0+ds-1 Installed-Size: 413 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-api-4.0, r-api-bioc-3.19, r-cran-yaml, r-bioc-s4vectors (>= 0.42.1), r-bioc-biocparallel (>= 1.38.0), r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, cwltool, r-bioc-basilisk (>= 1.16.0) Suggests: r-cran-testthat, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocstyle (>= 2.32.1) Description: An R interface to the Common Workflow Language Homepage: https://rcwl.org/Rcwl/ Description-md5: 93cc119718e4f3d84d6372663e7d3cc6 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-rcwl/r-bioc-rcwl_1.20.0+ds-1_all.deb Size: 319316 MD5sum: eea2e6c5963948532224e8284faa5f88 SHA256: eefdced013666310a916539e6478bf07a1d0c04990ded434942f0a5aa0b94d9b [sid] Package: r-bioc-rcwl Version: 1.22.0+ds-2 Installed-Size: 421 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-api-4.0, r-api-bioc-3.20, r-cran-yaml, r-bioc-s4vectors (>= 0.42.1), r-bioc-biocparallel (>= 1.38.0), r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, cwltool, r-bioc-basilisk (>= 1.16.0) Suggests: r-cran-testthat, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocstyle Description: An R interface to the Common Workflow Language Homepage: https://rcwl.org/Rcwl/ Description-md5: 93cc119718e4f3d84d6372663e7d3cc6 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-rcwl/r-bioc-rcwl_1.22.0+ds-2_all.deb Size: 327500 MD5sum: f11bd14bd3ca1fa193fd488d67fafb9f SHA256: 08354b882fa1f6d8455b8affb7d3914cdfb8b038bb1d25227868fa8358a505dd Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt r-bioc-rcwl=1.22.0+ds-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt r-bioc-rcwl=1.22.0+ds-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpnu19wumj 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpnu19wumj 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpnu19wumj/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', 'update'] 0m1.5s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [175 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9374 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6293 kB] Fetched 15.8 MB in 1s (19.1 MB/s) Reading package lists... 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', 'update'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: dash libc-bin libc6 sysvinit-utils 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3566 kB of archives. After this operation, 19.5 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 dash amd64 0.5.12-11 [95.5 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libc6 amd64 2.40-5 [2810 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libc-bin amd64 2.40-5 [627 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 sysvinit-utils amd64 3.13-1 [33.2 kB] Preconfiguring packages ... Fetched 3566 kB in 0s (44.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-11_amd64.deb ... Unpacking dash (0.5.12-11) over (0.5.12-9) ... Setting up dash (0.5.12-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../libc6_2.40-5_amd64.deb ... Unpacking libc6:amd64 (2.40-5) over (2.40-4) ... Setting up libc6:amd64 (2.40-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../libc-bin_2.40-5_amd64.deb ... Unpacking libc-bin (2.40-5) over (2.40-4) ... Setting up libc-bin (2.40-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.13-1_amd64.deb ... Unpacking sysvinit-utils (3.13-1) over (3.11-1) ... Setting up sysvinit-utils (3.13-1) ... Processing triggers for debianutils (5.21) ... 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s DUMP: e87e0b340279cb130e8d2ffe13ac1c5b - 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s INFO: Running scripts post_setup 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_setup_dummy_users'] 0m3.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_setup_dummy_users'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_setup_forbid_home'] 0m3.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_setup_forbid_home'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_setup_minimize'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_setup_minimize'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_setup_zz_backports'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_setup_zz_backports'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.0s DUMP: install ok installed apt apt 2.9.21 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.2-13 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-11 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-12 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.2 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.21 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libblkid1:amd64 libblkid1 2.40.2-13 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-5 install ok installed libc6:amd64 libc6 2.40-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-12 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-4 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-13 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-13 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-12 install ok installed libsystemd0:amd64 libsystemd0 257.1-7 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 257.1-7 install ok installed libuuid1:amd64 libuuid1 2.40.2-13 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.2-13 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-13 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl-base perl-base 5.40.0-8 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-5 install ok installed sysvinit-utils sysvinit-utils 3.13-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2024b-4 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.2-13 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m3.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 0m3.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 0m3.2s INFO: Running scripts is_testable 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/is_testable_uninstallable'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/is_testable_uninstallable'] 0m3.2s INFO: Running scripts pre_test 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_test_exceptions'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_test_exceptions'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_test_root_password'] 0m3.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_test_root_password'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-rcwl'] 0m3.3s DUMP: Package: r-bioc-rcwl Version: 1.20.0+ds-1 Installed-Size: 413 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-api-4.0, r-api-bioc-3.19, r-cran-yaml, r-bioc-s4vectors (>= 0.42.1), r-bioc-biocparallel (>= 1.38.0), r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, cwltool, r-bioc-basilisk (>= 1.16.0) Suggests: r-cran-testthat, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocstyle (>= 2.32.1) Description-en: An R interface to the Common Workflow Language The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines. Description-md5: 93cc119718e4f3d84d6372663e7d3cc6 Homepage: https://rcwl.org/Rcwl/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-rcwl/r-bioc-rcwl_1.20.0+ds-1_all.deb Size: 319316 MD5sum: eea2e6c5963948532224e8284faa5f88 SHA256: eefdced013666310a916539e6478bf07a1d0c04990ded434942f0a5aa0b94d9b 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-rcwl'] 0m3.3s INFO: apt-cache knows about the following packages: r-bioc-rcwl 0m3.3s INFO: Running scripts pre_install 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_database-server'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_database-server'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_exceptions'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_exceptions'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_extras'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_extras'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'policy'] 0m3.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'policy'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'policy', 'r-bioc-rcwl'] 0m3.4s DUMP: r-bioc-rcwl: Installed: (none) Candidate: 1.20.0+ds-1 Version table: 1.20.0+ds-1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'policy', 'r-bioc-rcwl'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', '-y', 'install', 'r-bioc-rcwl'] 0m30.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax graphviz javascript-common libabsl20230802 libamd3 libann0 libaom3 libasan8 libatomic1 libavif16 libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcdt5 libcgraph6 libcolamd3 libcrypt-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgcc-14-dev libgcrypt20 libgd3 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu72 libidn2-0 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 libldap-2.5-0 liblerc4 liblsan0 libltdl7 liblua5.4-0 libncursesw6 libnghttp2-14 libnsl2 libnuma1 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libquadmath0 libraqm0 librav1e0.7 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-14-dev libsuitesparseconfig7 libsvtav1enc2 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 linux-libc-dev littler media-types netbase node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data perl perl-modules-5.40 procps python3 python3-arcp python3-argcomplete python3-autocommand python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-lxml python3-minimal python3-mistune python3-more-itertools python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-pkg-resources python3-prov python3-psutil python3-pydot python3-pyparsing python3-rdflib python3-requests python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-setuptools python3-spython python3-typeguard python3-typing-extensions python3-urllib3 python3-zipp python3.12 python3.12-minimal r-base-core r-bioc-basilisk r-bioc-basilisk.utils r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-munsell r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip Suggested packages: podman | docker.io | singularity-container cwltool-doc gsfonts graphviz-doc apache2 | lighttpd | httpd libboost-doc libboost1.83-doc libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc manpages-dev rng-tools libgd-tools gdbm-l10n low-memory-monitor libiodbc2-dev default-libmysqlclient-dev gnutls-bin krb5-doc krb5-user libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc libstdc++-14-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex citation-style-language-styles perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-charset-normalizer-doc cwl-utils python-lxml-doc python-prov-doc python-pyparsing-doc python-rdflib-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-setuptools-doc singularity-container python3-brotli python3.12-venv python3.12-doc binutils binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-biocstyle r-cran-testthat r-cran-callr r-bioc-biobase r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread r-bioc-summarizedexperiment r-bioc-graph r-cran-e1071 r-cran-future r-cran-future.batchtools r-cran-parallelmap r-cran-rpart r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-curl r-cran-rsvg r-cran-plyr r-cran-uuid r-cran-lubridate r-cran-getopt r-cran-httr r-cran-dbi r-cran-formattable r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-tinytest r-cran-rmpi r-cran-rlecuyer r-cran-bench r-cran-blob r-cran-brio r-cran-pkgbuild r-cran-pkgload r-cran-webshot r-cran-colourpicker r-cran-ggraph r-cran-tidygraph r-cran-flashclust r-cran-plm r-cran-zoo readline-doc Recommended packages: nodejs fonts-liberation manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n libgts-bin libheif-plugin-x265 libheif-plugin-aomenc node-jquery krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules psmisc linux-sysctl-defaults python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-matplotlib python3-numpy python3-pygraphviz python3-scipy python3-yaml python3-html5rdf python3-orjson black r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-openssl r-cran-ranger r-cran-curl r-cran-future r-cran-ggplot2 r-cran-thematic r-cran-fastmatch r-cran-devtools r-cran-microbenchmark r-cran-tinytest r-cran-callr r-cran-covr r-cran-mockery r-cran-processx r-cran-ps r-cran-whoami r-cran-kernsmooth r-cran-mass r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis r-cran-xml2 r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-xts r-cran-zoo r-cran-markdown r-cran-broom r-cran-dbi r-cran-dbplyr r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-unitizer r-cran-rsvg r-cran-testit r-cran-spelling r-cran-survival r-cran-pkgload r-cran-waldo r-cran-cairo r-cran-ragg r-cran-ape r-bioc-graph r-cran-rgl r-cran-vdiffr r-cran-httr r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick r-cran-tikzdevice r-cran-webshot r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-lubridate r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-mockr r-cran-dichromat r-cran-dt r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-nleqslv r-cran-remotes r-cran-renv r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax graphviz javascript-common libabsl20230802 libamd3 libann0 libaom3 libasan8 libatomic1 libavif16 libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcdt5 libcgraph6 libcolamd3 libcrypt-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgcc-14-dev libgcrypt20 libgd3 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu72 libidn2-0 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 libldap-2.5-0 liblerc4 liblsan0 libltdl7 liblua5.4-0 libncursesw6 libnghttp2-14 libnsl2 libnuma1 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libquadmath0 libraqm0 librav1e0.7 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-14-dev libsuitesparseconfig7 libsvtav1enc2 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 linux-libc-dev littler media-types netbase node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data perl perl-modules-5.40 procps python3 python3-arcp python3-argcomplete python3-autocommand python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-lxml python3-minimal python3-mistune python3-more-itertools python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-pkg-resources python3-prov python3-psutil python3-pydot python3-pyparsing python3-rdflib python3-requests python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-setuptools python3-spython python3-typeguard python3-typing-extensions python3-urllib3 python3-zipp python3.12 python3.12-minimal r-base-core r-bioc-basilisk r-bioc-basilisk.utils r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-rcwl r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-munsell r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip 0 upgraded, 333 newly installed, 0 to remove and 0 not upgraded. Need to get 245 MB of archives. After this operation, 1055 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.8-1 [26.9 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5-2+b1 [136 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] Get:23 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.8-1 [27.9 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20241223 [164 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.40 all 5.40.0-8 [3015 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 libperl5.40 amd64 5.40.0-8 [4320 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.40.0-8 [267 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0046 [41.1 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get:41 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2+b1 [179 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2024.12.14+ds-1 [9624 B] Get:46 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.8-2 [41.6 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.2.3-4 [112 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 python3-msgpack amd64 1.0.3-3+b3 [112 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 python3-cachecontrol all 0.14.1-1 [18.6 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 python3-mistune all 3.0.2-2 [33.2 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 python3-mypy-extensions all 1.0.0-1 [6064 B] Get:55 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 python3-rdflib all 7.1.1-2 [472 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 python3-filelock all 3.16.1-1 [12.6 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 python3-schema-salad amd64 8.8.20241206093842-1 [1220 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 cwl-upgrader all 1.2.12-1 [15.7 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 python3-argcomplete all 3.5.3-1 [40.4 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 python3-coloredlogs all 15.0.1-1 [47.4 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 python3-cwl-utils all 0.36-1 [125 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.51-3 [82.2 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.3.0-1+b1 [1676 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get:75 http://deb.debian.org/debian trixie/main amd64 python3-prov all 2.0.1-1 [95.1 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 python3-psutil amd64 5.9.8-2 [225 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 libcdt5 amd64 2.42.4-2+b1 [40.5 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 libcgraph6 amd64 2.42.4-2+b1 [64.2 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 libaom3 amd64 3.11.0-1 [1879 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 libdav1d7 amd64 1.5.0-1+b1 [550 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get:83 http://deb.debian.org/debian trixie/main amd64 libgav1-1 amd64 0.19.0-3 [350 kB] Get:84 http://deb.debian.org/debian trixie/main amd64 librav1e0.7 amd64 0.7.1-9 [939 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 libyuv0 amd64 0.0.1898.20241219-1 [173 kB] Get:88 http://deb.debian.org/debian trixie/main amd64 libavif16 amd64 1.1.1-1 [117 kB] Get:89 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-3 [280 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get:96 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-dav1d amd64 1.19.5-1 [11.2 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 libde265-0 amd64 1.0.15-1+b2 [189 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-libde265 amd64 1.19.5-1 [15.2 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 libheif1 amd64 1.19.5-1 [514 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-12 [137 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-12 [9300 B] Get:105 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.4-1 [1501 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.1.0-2 [478 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:111 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 libgd3 amd64 2.3.3-12+b1 [126 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2+b1 [160 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:124 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b3 [27.8 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.5.4-2 [415 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get:132 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:133 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.55.0+ds-3 [225 kB] Get:134 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.55.0+ds-3 [54.6 kB] Get:135 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.55.0+ds-3 [35.4 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 libpathplan4 amd64 2.42.4-2+b1 [42.8 kB] Get:137 http://deb.debian.org/debian trixie/main amd64 libgvc6 amd64 2.42.4-2+b1 [685 kB] Get:138 http://deb.debian.org/debian trixie/main amd64 libgvpr2 amd64 2.42.4-2+b1 [193 kB] Get:139 http://deb.debian.org/debian trixie/main amd64 liblab-gamut1 amd64 2.42.4-2+b1 [198 kB] Get:140 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get:141 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:142 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get:143 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB] Get:144 http://deb.debian.org/debian trixie/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get:145 http://deb.debian.org/debian trixie/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get:146 http://deb.debian.org/debian trixie/main amd64 graphviz amd64 2.42.4-2+b1 [616 kB] Get:147 http://deb.debian.org/debian trixie/main amd64 python3-pydot all 2.0.0-3 [32.6 kB] Get:148 http://deb.debian.org/debian trixie/main amd64 python3-spython all 0.3.13-2 [55.2 kB] Get:149 http://deb.debian.org/debian trixie/main amd64 python3-arcp all 0.2.1-7 [13.6 kB] Get:150 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:151 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get:152 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get:153 http://deb.debian.org/debian trixie/main amd64 cwltool all 3.1.20241112140730-1 [514 kB] Get:154 http://deb.debian.org/debian trixie/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:155 http://deb.debian.org/debian trixie/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:156 http://deb.debian.org/debian trixie/main amd64 javascript-common all 11+nmu1 [6260 B] Get:157 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [23.8 kB] Get:158 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.8.3+dfsg-2 [40.7 kB] Get:159 http://deb.debian.org/debian trixie/main amd64 libasan8 amd64 14.2.0-12 [2727 kB] Get:160 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get:161 http://deb.debian.org/debian trixie/main amd64 libitm1 amd64 14.2.0-12 [25.9 kB] Get:162 http://deb.debian.org/debian trixie/main amd64 liblsan0 amd64 14.2.0-12 [1205 kB] Get:163 http://deb.debian.org/debian trixie/main amd64 libtsan2 amd64 14.2.0-12 [2460 kB] Get:164 http://deb.debian.org/debian trixie/main amd64 libubsan1 amd64 14.2.0-12 [1075 kB] Get:165 http://deb.debian.org/debian trixie/main amd64 libhwasan0 amd64 14.2.0-12 [1489 kB] Get:166 http://deb.debian.org/debian trixie/main amd64 libquadmath0 amd64 14.2.0-12 [145 kB] Get:167 http://deb.debian.org/debian trixie/main amd64 libgcc-14-dev amd64 14.2.0-12 [2673 kB] Get:168 http://deb.debian.org/debian trixie/main amd64 libc-dev-bin amd64 2.40-5 [52.4 kB] Get:169 http://deb.debian.org/debian trixie/main amd64 linux-libc-dev all 6.12.6-1 [2478 kB] Get:170 http://deb.debian.org/debian trixie/main amd64 libcrypt-dev amd64 1:4.4.36-5 [118 kB] Get:171 http://deb.debian.org/debian trixie/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:172 http://deb.debian.org/debian trixie/main amd64 libc6-dev amd64 2.40-5 [1957 kB] Get:173 http://deb.debian.org/debian trixie/main amd64 libstdc++-14-dev amd64 14.2.0-12 [2372 kB] Get:174 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4 [10.6 MB] Get:175 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:176 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [32.5 kB] Get:177 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get:178 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get:179 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:180 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get:181 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Get:182 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get:183 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get:184 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.19+dfsg-1 [187 kB] Get:185 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:186 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:187 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:188 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:189 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get:190 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-12 [836 kB] Get:191 http://deb.debian.org/debian trixie/main amd64 libglpk40 amd64 5.0-1+b2 [401 kB] Get:192 http://deb.debian.org/debian trixie/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get:193 http://deb.debian.org/debian trixie/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get:194 http://deb.debian.org/debian trixie/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:195 http://deb.debian.org/debian trixie/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get:196 http://deb.debian.org/debian trixie/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get:197 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:198 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get:199 http://deb.debian.org/debian trixie/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get:200 http://deb.debian.org/debian trixie/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get:201 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get:202 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:203 http://deb.debian.org/debian trixie/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get:204 http://deb.debian.org/debian trixie/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:205 http://deb.debian.org/debian trixie/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get:206 http://deb.debian.org/debian trixie/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get:207 http://deb.debian.org/debian trixie/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get:208 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get:209 http://deb.debian.org/debian trixie/main amd64 liblua5.4-0 amd64 5.4.7-1+b2 [147 kB] Get:210 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get:211 http://deb.debian.org/debian trixie/main amd64 libpaper2 amd64 2.2.5-0.3 [16.3 kB] Get:212 http://deb.debian.org/debian trixie/main amd64 libpaper-utils amd64 2.2.5-0.3 [16.1 kB] Get:213 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get:214 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b3 [54.6 kB] Get:215 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:216 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get:217 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get:218 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:219 http://deb.debian.org/debian trixie/main amd64 zip amd64 3.0-14 [233 kB] Get:220 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB] Get:221 http://deb.debian.org/debian trixie/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:222 http://deb.debian.org/debian trixie/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB] Get:223 http://deb.debian.org/debian trixie/main amd64 r-cran-littler amd64 0.3.20-2 [103 kB] Get:224 http://deb.debian.org/debian trixie/main amd64 littler all 0.3.20-2 [16.0 kB] Get:225 http://deb.debian.org/debian trixie/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get:226 http://deb.debian.org/debian trixie/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get:227 http://deb.debian.org/debian trixie/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB] Get:228 http://deb.debian.org/debian trixie/main amd64 pandoc-data all 3.1.11.1-3 [459 kB] Get:229 http://deb.debian.org/debian trixie/main amd64 pandoc amd64 3.1.11.1+ds-2 [26.4 MB] Get:230 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get:231 http://deb.debian.org/debian trixie/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB] Get:232 http://deb.debian.org/debian trixie/main amd64 r-cran-matrix amd64 1.7-1-1 [4138 kB] Get:233 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get:234 http://deb.debian.org/debian trixie/main amd64 r-cran-rcpp amd64 1.0.13-1-1 [2074 kB] Get:235 http://deb.debian.org/debian trixie/main amd64 r-cran-rcpptoml amd64 0.2.2+dfsg-1 [108 kB] Get:236 http://deb.debian.org/debian trixie/main amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] Get:237 http://deb.debian.org/debian trixie/main amd64 r-cran-here all 1.0.1-2 [48.7 kB] Get:238 http://deb.debian.org/debian trixie/main amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] Get:239 http://deb.debian.org/debian trixie/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] Get:240 http://deb.debian.org/debian trixie/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB] Get:241 http://deb.debian.org/debian trixie/main amd64 r-cran-rlang amd64 1.1.4-1 [1712 kB] Get:242 http://deb.debian.org/debian trixie/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get:243 http://deb.debian.org/debian trixie/main amd64 r-cran-reticulate amd64 1.39.0+dfsg-1 [1512 kB] Get:244 http://deb.debian.org/debian trixie/main amd64 r-cran-filelock amd64 1.0.3-1 [27.3 kB] Get:245 http://deb.debian.org/debian trixie/main amd64 r-bioc-dir.expiry all 1.12.0+ds-1 [31.3 kB] Get:246 http://deb.debian.org/debian trixie/main amd64 r-bioc-basilisk.utils all 1.16.0+ds-1 [77.9 kB] Get:247 http://deb.debian.org/debian trixie/main amd64 r-bioc-basilisk amd64 1.16.0+ds-1 [97.0 kB] Get:248 http://deb.debian.org/debian trixie/main amd64 r-cran-formatr all 1.14-2 [152 kB] Get:249 http://deb.debian.org/debian trixie/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get:250 http://deb.debian.org/debian trixie/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get:251 http://deb.debian.org/debian trixie/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:252 http://deb.debian.org/debian trixie/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:253 http://deb.debian.org/debian trixie/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:254 http://deb.debian.org/debian trixie/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get:255 http://deb.debian.org/debian trixie/main amd64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get:256 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocparallel amd64 1.38.0-2 [1325 kB] Get:257 http://deb.debian.org/debian trixie/main amd64 r-cran-yaml amd64 2.3.10-1 [108 kB] Get:258 http://deb.debian.org/debian trixie/main amd64 r-bioc-s4vectors amd64 0.42.1+dfsg-2 [1894 kB] Get:259 http://deb.debian.org/debian trixie/main amd64 r-cran-backports amd64 1.5.0-2 [121 kB] Get:260 http://deb.debian.org/debian trixie/main amd64 r-cran-base64url amd64 1.4-2+b1 [26.4 kB] Get:261 http://deb.debian.org/debian trixie/main amd64 r-cran-brew all 1.0-10-1 [70.1 kB] Get:262 http://deb.debian.org/debian trixie/main amd64 r-cran-checkmate amd64 2.3.2-1 [705 kB] Get:263 http://deb.debian.org/debian trixie/main amd64 r-cran-data.table amd64 1.16.4+dfsg-1 [1980 kB] Get:264 http://deb.debian.org/debian trixie/main amd64 r-cran-digest amd64 0.6.37-1 [206 kB] Get:265 http://deb.debian.org/debian trixie/main amd64 r-cran-fs amd64 1.6.4+dfsg-1 [247 kB] Get:266 http://deb.debian.org/debian trixie/main amd64 r-cran-crayon all 1.5.2-1 [165 kB] Get:267 http://deb.debian.org/debian trixie/main amd64 r-cran-cli amd64 3.6.3-1 [1342 kB] Get:268 http://deb.debian.org/debian trixie/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB] Get:269 http://deb.debian.org/debian trixie/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get:270 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:271 http://deb.debian.org/debian trixie/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get:272 http://deb.debian.org/debian trixie/main amd64 r-cran-hms all 1.1.3-1 [104 kB] Get:273 http://deb.debian.org/debian trixie/main amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] Get:274 http://deb.debian.org/debian trixie/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get:275 http://deb.debian.org/debian trixie/main amd64 r-cran-progress all 1.2.3-1 [93.0 kB] Get:276 http://deb.debian.org/debian trixie/main amd64 r-cran-stringi amd64 1.8.4-1 [895 kB] Get:277 http://deb.debian.org/debian trixie/main amd64 r-cran-batchtools amd64 0.9.17+dfsg-1 [712 kB] Get:278 http://deb.debian.org/debian trixie/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get:279 http://deb.debian.org/debian trixie/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:280 http://deb.debian.org/debian trixie/main amd64 r-cran-fansi amd64 1.0.5-1 [621 kB] Get:281 http://deb.debian.org/debian trixie/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get:282 http://deb.debian.org/debian trixie/main amd64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get:283 http://deb.debian.org/debian trixie/main amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [420 kB] Get:284 http://deb.debian.org/debian trixie/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [223 kB] Get:285 http://deb.debian.org/debian trixie/main amd64 r-cran-dplyr amd64 1.1.4-4 [1543 kB] Get:286 http://deb.debian.org/debian trixie/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB] Get:287 http://deb.debian.org/debian trixie/main amd64 r-cran-fastmap amd64 1.2.0-1 [72.2 kB] Get:288 http://deb.debian.org/debian trixie/main amd64 r-cran-htmltools amd64 0.5.8.1-1 [378 kB] Get:289 http://deb.debian.org/debian trixie/main amd64 r-cran-evaluate all 1.0.0-1 [112 kB] Get:290 http://deb.debian.org/debian trixie/main amd64 r-cran-xfun amd64 0.49+dfsg-1 [546 kB] Get:291 http://deb.debian.org/debian trixie/main amd64 r-cran-highr all 0.11+dfsg-1 [38.3 kB] Get:292 http://deb.debian.org/debian trixie/main amd64 r-cran-knitr all 1.49+dfsg-1 [861 kB] Get:293 http://deb.debian.org/debian trixie/main amd64 r-cran-cachem amd64 1.1.0-1 [73.9 kB] Get:294 http://deb.debian.org/debian trixie/main amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get:295 http://deb.debian.org/debian trixie/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get:296 http://deb.debian.org/debian trixie/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get:297 http://deb.debian.org/debian trixie/main amd64 r-cran-sass amd64 0.4.9+dfsg-1 [965 kB] Get:298 http://deb.debian.org/debian trixie/main amd64 r-cran-bslib all 0.7.0+dfsg-1 [4365 kB] Get:299 http://deb.debian.org/debian trixie/main amd64 r-cran-fontawesome all 0.5.2-1 [1286 kB] Get:300 http://deb.debian.org/debian trixie/main amd64 r-cran-tinytex all 0.53-1 [146 kB] Get:301 http://deb.debian.org/debian trixie/main amd64 r-cran-later amd64 1.3.2+dfsg-1 [118 kB] Get:302 http://deb.debian.org/debian trixie/main amd64 r-cran-promises amd64 1.3.0+dfsg-1 [284 kB] Get:303 http://deb.debian.org/debian trixie/main amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [493 kB] Get:304 http://deb.debian.org/debian trixie/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:305 http://deb.debian.org/debian trixie/main amd64 r-cran-sourcetools amd64 0.1.7-1-1 [45.9 kB] Get:306 http://deb.debian.org/debian trixie/main amd64 r-cran-commonmark amd64 1.9.2-2 [122 kB] Get:307 http://deb.debian.org/debian trixie/main amd64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB] Get:308 http://deb.debian.org/debian trixie/main amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get:309 http://deb.debian.org/debian trixie/main amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] Get:310 http://deb.debian.org/debian trixie/main amd64 r-cran-igraph amd64 2.0.3-1 [5037 kB] Get:311 http://deb.debian.org/debian trixie/main amd64 r-cran-purrr amd64 1.0.2-1 [507 kB] Get:312 http://deb.debian.org/debian trixie/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get:313 http://deb.debian.org/debian trixie/main amd64 r-cran-clipr all 0.8.0-1 [53.0 kB] Get:314 http://deb.debian.org/debian trixie/main amd64 r-cran-bit amd64 4.0.5-1 [1070 kB] Get:315 http://deb.debian.org/debian trixie/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB] Get:316 http://deb.debian.org/debian trixie/main amd64 r-cran-tzdb amd64 0.4.0-2 [499 kB] Get:317 http://deb.debian.org/debian trixie/main amd64 r-cran-vroom amd64 1.6.5-1 [830 kB] Get:318 http://deb.debian.org/debian trixie/main amd64 r-cran-readr amd64 2.1.5-1 [759 kB] Get:319 http://deb.debian.org/debian trixie/main amd64 r-cran-rstudioapi all 0.17.1-1 [307 kB] Get:320 http://deb.debian.org/debian trixie/main amd64 r-cran-farver amd64 2.1.2-1 [1411 kB] Get:321 http://deb.debian.org/debian trixie/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get:322 http://deb.debian.org/debian trixie/main amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1716 kB] Get:323 http://deb.debian.org/debian trixie/main amd64 r-cran-munsell all 0.5.1-1 [237 kB] Get:324 http://deb.debian.org/debian trixie/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get:325 http://deb.debian.org/debian trixie/main amd64 r-cran-scales all 1.3.0-1 [677 kB] Get:326 http://deb.debian.org/debian trixie/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Get:327 http://deb.debian.org/debian trixie/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB] Get:328 http://deb.debian.org/debian trixie/main amd64 r-cran-visnetwork all 2.1.2+ds-1 [2983 kB] Get:329 http://deb.debian.org/debian trixie/main amd64 r-cran-diagrammer all 1.0.11+ds-2 [1505 kB] Get:330 http://deb.debian.org/debian trixie/main amd64 r-cran-r.methodss3 all 1.8.2-1 [84.5 kB] Get:331 http://deb.debian.org/debian trixie/main amd64 r-cran-r.oo all 1.26.0-1 [961 kB] Get:332 http://deb.debian.org/debian trixie/main amd64 r-cran-r.utils all 2.12.3-1 [1396 kB] Get:333 http://deb.debian.org/debian trixie/main amd64 r-bioc-rcwl all 1.20.0+ds-1 [319 kB] Preconfiguring packages ... Fetched 245 MB in 3s (81.1 MB/s) Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5027 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... 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Setting up python3-pkg-resources (75.6.0-1) ... Setting up r-cran-r.utils (2.12.3-1) ... Setting up r-cran-vroom (1.6.5-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up r-cran-httpuv (1.6.15+dfsg-1) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-prov (2.0.1-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up r-cran-bslib (0.7.0+dfsg-1) ... Setting up r-cran-readr (2.1.5-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up r-cran-tidyr (1.3.1-1) ... Setting up r-cran-batchtools (0.9.17+dfsg-1) ... Setting up python3-cachecontrol (0.14.1-1) ... Setting up python3-schema-salad (8.8.20241206093842-1) ... Setting up r-cran-shiny (1.9.1+dfsg-1) ... Setting up cwl-upgrader (1.2.12-1) ... Setting up r-cran-rmarkdown (2.28+dfsg-1) ... Setting up python3-cwl-utils (0.36-1) ... Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... Setting up r-cran-visnetwork (2.1.2+ds-1) ... Setting up r-cran-diagrammer (1.0.11+ds-2) ... Setting up libheif-plugin-dav1d:amd64 (1.19.5-1) ... Setting up libheif-plugin-libde265:amd64 (1.19.5-1) ... Setting up libheif1:amd64 (1.19.5-1) ... Setting up libgd3:amd64 (2.3.3-12+b1) ... Setting up libgvc6 (2.42.4-2+b1) ... Setting up graphviz (2.42.4-2+b1) ... Setting up python3-pydot (2.0.0-3) ... Setting up cwltool (3.1.20241112140730-1) ... Setting up r-bioc-rcwl (1.20.0+ds-1) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', '-y', 'install', 'r-bioc-rcwl'] 0m30.2s INFO: Running scripts post_install 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_install_exceptions'] 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_install_exceptions'] 0m30.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 0m31.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 0m31.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpnu19wumj to sid 0m31.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m31.8s INFO: Running scripts pre_distupgrade 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', 'update'] 0m33.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7323 kB] Fetched 17.5 MB in 1s (12.5 MB/s) Reading package lists... 0m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', 'update'] 0m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', '-yf', 'dist-upgrade'] 0m43.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl2 libpython3.12-minimal libpython3.12-stdlib python3.12 python3.12-minimal Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal The following packages will be upgraded: bsdutils dpkg fontconfig fontconfig-config gcc-14-base graphviz libasan8 libatomic1 libblkid1 libcdt5 libcgraph6 libfontconfig1 libgcc-14-dev libgcc-s1 libgfortran5 libgomp1 libgvc6 libgvpr2 libhwasan0 libicu72 libitm1 liblab-gamut1 liblsan0 libmount1 libpathplan4 libpng16-16t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libquadmath0 libsharpyuv0 libsmartcols1 libssl3t64 libstdc++-14-dev libstdc++6 libsystemd0 libtcl8.6 libtk8.6 libtsan2 libubsan1 libudev1 libuuid1 libwebp7 libxxhash0 libyuv0 linux-libc-dev login mount openssl openssl-provider-legacy python3 python3-cachecontrol python3-minimal python3.12 python3.12-minimal r-bioc-basilisk r-bioc-basilisk.utils r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-rcwl r-bioc-s4vectors tzdata util-linux x11-common 65 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 58.4 MB of archives. After this operation, 23.2 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.3-1 [106 kB] Get:2 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.13 [1534 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.3-1 [36.2 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.3-1 [169 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.3-1 [200 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.3-1 [140 kB] Get:7 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.3-1 [1212 kB] Get:8 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.3-1 [155 kB] Get:9 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.40.3-1 [88.4 kB] Get:10 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.4.0-2 [301 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.4.0-2 [2302 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get:16 http://deb.debian.org/debian sid/main amd64 tzdata all 2024b-5 [256 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB] Get:18 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.1-3 [740 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get:20 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.8-5 [677 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.8-5 [1971 kB] Get:22 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.8-5 [2164 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.8-5 [817 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14.2.0-13 [2728 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14.2.0-13 [1075 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-13 [137 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14.2.0-13 [25.9 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-13 [9280 B] Get:29 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14.2.0-13 [1205 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14.2.0-13 [1489 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.2.0-13 [145 kB] Get:32 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-13 [48.6 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-13 [713 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.2.0-13 [2374 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.2.0-13 [2675 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14.2.0-13 [2461 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-13 [837 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-13 [72.7 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 257.2-1 [449 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 257.2-1 [148 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB] Get:42 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB] Get:44 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-2 [463 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libcdt5 amd64 2.42.4-2+b2 [40.5 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libcgraph6 amd64 2.42.4-2+b2 [64.3 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libpathplan4 amd64 2.42.4-2+b2 [42.8 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libgvc6 amd64 2.42.4-2+b2 [685 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libgvpr2 amd64 2.42.4-2+b2 [193 kB] Get:52 http://deb.debian.org/debian sid/main amd64 liblab-gamut1 amd64 2.42.4-2+b2 [198 kB] Get:53 http://deb.debian.org/debian sid/main amd64 graphviz amd64 2.42.4-2+b2 [618 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.45-1 [281 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libyuv0 amd64 0.0.1899.20250103-1 [173 kB] Get:59 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.12.9-1 [2488 kB] Get:60 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.4.0-2 [1422 kB] Get:61 http://deb.debian.org/debian sid/main amd64 python3-cachecontrol all 0.14.2-1 [18.3 kB] Get:62 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2061 kB] Get:63 http://deb.debian.org/debian sid/main amd64 r-bioc-biocparallel amd64 1.40.0-2 [1326 kB] Get:64 http://deb.debian.org/debian sid/main amd64 r-bioc-rcwl all 1.22.0+ds-2 [328 kB] Get:65 http://deb.debian.org/debian sid/main amd64 r-bioc-dir.expiry all 1.14.0+ds-2 [32.3 kB] Get:66 http://deb.debian.org/debian sid/main amd64 r-bioc-basilisk.utils all 1.18.0+ds-2 [78.4 kB] Get:67 http://deb.debian.org/debian sid/main amd64 r-bioc-basilisk amd64 1.18.0+ds-2 [99.0 kB] Get:68 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get:69 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23.2 [216 kB] Preconfiguring packages ... Fetched 58.4 MB in 1s (94.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57236 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.3-1_amd64.deb ... Unpacking bsdutils (1:2.40.3-1) over (1:2.40.2-13) ... Setting up bsdutils (1:2.40.3-1) ... (Reading database ... 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Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpathplan4:amd64 (2.42.4-2+b2) ... Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... Setting up libquadmath0:amd64 (14.2.0-13) ... Setting up libpng16-16t64:amd64 (1.6.45-1) ... Setting up libatomic1:amd64 (14.2.0-13) ... Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... Setting up libgfortran5:amd64 (14.2.0-13) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libubsan1:amd64 (14.2.0-13) ... Setting up mount (2.40.3-1) ... Setting up libhwasan0:amd64 (14.2.0-13) ... Setting up libasan8:amd64 (14.2.0-13) ... Setting up libcdt5:amd64 (2.42.4-2+b2) ... Setting up libcgraph6:amd64 (2.42.4-2+b2) ... Setting up libfontconfig1:amd64 (2.15.0-2) ... Setting up libtsan2:amd64 (14.2.0-13) ... Setting up r-bioc-dir.expiry (1.14.0+ds-2) ... Setting up openssl (3.4.0-2) ... Setting up libyuv0:amd64 (0.0.1899.20250103-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.1-3) ... Setting up liblsan0:amd64 (14.2.0-13) ... Setting up libitm1:amd64 (14.2.0-13) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up login (1:4.16.0-2+really2.40.3-1) ... Setting up r-bioc-basilisk.utils (1.18.0+ds-2) ... Setting up python3.12-minimal (3.12.8-5) ... Setting up fontconfig (2.15.0-2) ... Regenerating fonts cache... done. Setting up libpython3.12-stdlib:amd64 (3.12.8-5) ... Setting up python3.13 (3.13.1-3) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up python3.12 (3.12.8-5) ... Setting up python3 (3.13.1-2) ... Setting up r-bioc-basilisk (1.18.0+ds-2) ... Setting up libgvc6 (2.42.4-2+b2) ... Setting up libgvpr2:amd64 (2.42.4-2+b2) ... Setting up python3-cachecontrol (0.14.2-1) ... Setting up libgcc-14-dev:amd64 (14.2.0-13) ... Setting up libstdc++-14-dev:amd64 (14.2.0-13) ... Setting up graphviz (2.42.4-2+b2) ... Setting up r-bioc-rcwl (1.22.0+ds-2) ... Processing triggers for libc-bin (2.40-5) ... 0m43.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', '-yf', 'dist-upgrade'] 0m43.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m43.6s DUMP: 5d922b73ecf520936b2f016c60f33a34 - 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-rcwl'] 0m43.7s DUMP: Package: r-bioc-rcwl Version: 1.22.0+ds-2 Installed-Size: 421 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-api-4.0, r-api-bioc-3.20, r-cran-yaml, r-bioc-s4vectors (>= 0.42.1), r-bioc-biocparallel (>= 1.38.0), r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, cwltool, r-bioc-basilisk (>= 1.16.0) Suggests: r-cran-testthat, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocstyle Description-en: An R interface to the Common Workflow Language The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines. Description-md5: 93cc119718e4f3d84d6372663e7d3cc6 Homepage: https://rcwl.org/Rcwl/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-rcwl/r-bioc-rcwl_1.22.0+ds-2_all.deb Size: 327500 MD5sum: f11bd14bd3ca1fa193fd488d67fafb9f SHA256: 08354b882fa1f6d8455b8affb7d3914cdfb8b038bb1d25227868fa8358a505dd 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-rcwl'] 0m43.7s INFO: apt-cache knows about the following packages: r-bioc-rcwl 0m43.7s INFO: Running scripts pre_install 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_database-server'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_database-server'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_exceptions'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_exceptions'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_extras'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_extras'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_foreign_architecture'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_foreign_architecture'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'policy'] 0m43.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'policy'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'policy', 'r-bioc-rcwl'] 0m43.7s DUMP: r-bioc-rcwl: Installed: 1.22.0+ds-2 Candidate: 1.22.0+ds-2 Version table: *** 1.22.0+ds-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'policy', 'r-bioc-rcwl'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', '-y', 'install', 'r-bioc-rcwl'] 0m44.0s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-rcwl is already the newest version (1.22.0+ds-2). The following packages were automatically installed and are no longer required: libnsl2 libpython3.12-minimal libpython3.12-stdlib python3.12 python3.12-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', '-y', 'install', 'r-bioc-rcwl'] 0m44.0s INFO: Running scripts post_install 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_install_exceptions'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_install_exceptions'] 0m44.0s INFO: Running scripts post_distupgrade 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_distupgrade_exceptions'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_distupgrade_exceptions'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m44.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 0m45.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 0m45.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 0m47.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 0m47.3s INFO: Running scripts pre_install 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_database-server'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_database-server'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_exceptions'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_exceptions'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_extras'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_extras'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'policy'] 0m47.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'policy'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'policy', 'r-bioc-rcwl'] 0m47.4s DUMP: r-bioc-rcwl: Installed: 1.22.0+ds-2 Candidate: 1.22.0+ds-2 Version table: *** 1.22.0+ds-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-cache', 'policy', 'r-bioc-rcwl'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', '-y', 'install', 'r-bioc-rcwl=1.22.0+ds-2'] 0m47.6s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-rcwl is already the newest version (1.22.0+ds-2). The following packages were automatically installed and are no longer required: libnsl2 libpython3.12-minimal libpython3.12-stdlib python3.12 python3.12-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', '-y', 'install', 'r-bioc-rcwl=1.22.0+ds-2'] 0m47.6s INFO: Running scripts post_install 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_install_exceptions'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_install_exceptions'] 0m47.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 0m49.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 0m51.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', '-ac', '--ignore-obsolete'] 0m54.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', '-ac', '--ignore-obsolete'] 0m54.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m54.6s DUMP: 0.15.6 0m54.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m54.6s INFO: Running adequate version 0.15.6 now. 0m54.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'r-bioc-rcwl'] 0m54.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'r-bioc-rcwl'] 0m54.7s INFO: Running scripts pre_remove 0m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m0.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m0.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_remove_exceptions'] 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/pre_remove_exceptions'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m0.2s DUMP: install ok installed apt apt 2.9.21 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.3-1 install ok installed ca-certificates ca-certificates 20241223 install ok installed coreutils coreutils 9.5-1+b1 install ok installed cwl-upgrader cwl-upgrader 1.2.12-1 install ok installed cwltool cwltool 3.1.20241112140730-1 install ok installed dash dash 0.5.12-11 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.13 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig fontconfig 2.15.0-2 install ok installed fontconfig-config fontconfig-config 2.15.0-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-3 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-13 install ok installed graphviz graphviz 2.42.4-2+b2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.2 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed javascript-common javascript-common 11+nmu1 install ok installed libabsl20230802:amd64 libabsl20230802 20230802.1-4 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libamd3:amd64 libamd3 1:7.8.3+dfsg-2 install ok installed libann0 libann0 1.1.2+doc-9+b1 install ok installed libaom3:amd64 libaom3 3.11.0-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.21 install ok installed libasan8:amd64 libasan8 14.2.0-13 install ok installed libatomic1:amd64 libatomic1 14.2.0-13 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libavif16:amd64 libavif16 1.1.1-1 install ok installed libblas3:amd64 libblas3 3.12.0-4 install ok installed libblkid1:amd64 libblkid1 2.40.3-1 install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2+b2 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-4 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b6 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-5 install ok installed libc-dev-bin libc-dev-bin 2.40-5 install ok installed libc6:amd64 libc6 2.40-5 install ok installed libc6-dev:amd64 libc6-dev 2.40-5 install ok installed libcairo2:amd64 libcairo2 1.18.2-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcdt5:amd64 libcdt5 2.42.4-2+b2 install ok installed libcgraph6:amd64 libcgraph6 2.42.4-2+b2 install ok installed libcolamd3:amd64 libcolamd3 1:7.8.3+dfsg-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-5 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libcurl4t64:amd64 libcurl4t64 8.11.1-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3+b1 install ok installed libdav1d7:amd64 libdav1d7 1.5.0-1+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libde265-0:amd64 libde265-0 1.0.15-1+b2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libdeflate0:amd64 libdeflate0 1.22-1 install ok installed libexpat1:amd64 libexpat1 2.6.4-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1 install ok installed libgav1-1:amd64 libgav1-1 0.19.0-3 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.2.0-13 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-13 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-7 install ok installed libgd3:amd64 libgd3 2.3.3-12+b1 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.24-2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.24-2 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-13 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.82.4-1 install ok installed libglpk40:amd64 libglpk40 5.0-1+b2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-13 install ok installed libgpg-error0:amd64 libgpg-error0 1.51-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-3 install ok installed libgts-0.7-5t64:amd64 libgts-0.7-5t64 0.7.6+darcs121130-5.2+b1 install ok installed libgvc6 libgvc6 2.42.4-2+b2 install ok installed libgvpr2:amd64 libgvpr2 2.42.4-2+b2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.1.0-2 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.19.5-1 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.19.5-1 install ok installed libheif1:amd64 libheif1 1.19.5-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libhwasan0:amd64 libhwasan0 14.2.0-13 install ok installed libice6:amd64 libice6 2:1.1.1-1 install ok installed libicu72:amd64 libicu72 72.1-6 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b2 install ok installed libitm1:amd64 libitm1 14.2.0-13 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3+b1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-3 install ok installed libjs-bootstrap4 libjs-bootstrap4 4.6.1+dfsg1-4 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-es5-shim libjs-es5-shim 4.6.7-2 install ok installed libjs-highlight.js libjs-highlight.js 9.18.5+dfsg1-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.11.5+dfsg-2 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1.1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-json libjs-json 0~20221030+~1.0.8-1 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed libjs-microplugin.js libjs-microplugin.js 0.0.3+dfsg-1.1 install ok installed libjs-modernizr libjs-modernizr 3.13.0-0.1 install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-6 install ok installed libjs-prettify libjs-prettify 2015.12.04+dfsg-1.1 install ok installed libjs-sifter.js libjs-sifter.js 0.6.0+dfsg-3 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-4.1 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-3 install ok installed liblab-gamut1:amd64 liblab-gamut1 2.42.4-2+b2 install ok installed liblapack3:amd64 liblapack3 3.12.0-4 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.19+dfsg-1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed liblsan0:amd64 liblsan0 14.2.0-13 install ok installed libltdl7:amd64 libltdl7 2.5.4-2 install ok installed liblua5.4-0:amd64 liblua5.4-0 5.4.7-1+b2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-4 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.3-1 install ok installed libncursesw6:amd64 libncursesw6 6.5-2+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b3 install ok installed libnuma1:amd64 libnuma1 2.0.18-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.55.0+ds-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.55.0+ds-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.55.0+ds-3 install ok installed libpaper-utils libpaper-utils 2.2.5-0.3 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.3 install ok installed libpathplan4:amd64 libpathplan4 2.42.4-2+b2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libperl5.40:amd64 libperl5.40 5.40.0-8 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.45-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-6 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.1-2 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.8-5 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.8-5 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.1-3 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.1-3 install ok installed libquadmath0:amd64 libquadmath0 14.2.0-13 install ok installed libraqm0:amd64 libraqm0 0.10.2-1 install ok installed librav1e0.7:amd64 librav1e0.7 0.7.1-9 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-8 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-8 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libsm6:amd64 libsm6 2:1.2.4-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.3-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.0-2 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.2.0-13 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-13 install ok installed libsuitesparseconfig7:amd64 libsuitesparseconfig7 1:7.8.3+dfsg-2 install ok installed libsvtav1enc2:amd64 libsvtav1enc2 2.3.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 257.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.16+dfsg-1 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2+b1 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-5 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3+b1 install ok installed libtk8.6:amd64 libtk8.6 8.6.16-1 install ok installed libtsan2:amd64 libtsan2 14.2.0-13 install ok installed libubsan1:amd64 libubsan1 14.2.0-13 install ok installed libudev1:amd64 libudev1 257.2-1 install ok installed libunistring5:amd64 libunistring5 1.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.3-1 install ok installed libuv1t64:amd64 libuv1t64 1.48.0-7 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.10-2 install ok installed libx11-data libx11-data 2:1.8.10-2 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.16-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxft2:amd64 libxft2 2.3.6-1+b3 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.2+b1 install ok installed libxmu6:amd64 libxmu6 2:1.1.3-3+b4 install ok installed libxpm4:amd64 libxpm4 1:3.5.17-1+b3 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1+b3 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1.1+b1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b3 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2 install ok installed libyuv0:amd64 libyuv0 0.0.1899.20250103-1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed linux-libc-dev linux-libc-dev 6.12.9-1 install ok installed littler littler 0.3.20-2 install ok installed login login 1:4.16.0-2+really2.40.3-1 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40.3-1 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed netbase netbase 6.4 install ok installed node-bootstrap-sass node-bootstrap-sass 3.4.3-2 install ok installed node-html5shiv node-html5shiv 3.7.3+dfsg-5 install ok installed node-normalize.css node-normalize.css 8.0.1-5 install ok installed openssl openssl 3.4.0-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.0-2 install ok installed pandoc pandoc 3.1.11.1+ds-2 install ok installed pandoc-data pandoc-data 3.1.11.1-3 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl perl 5.40.0-8 install ok installed perl-base perl-base 5.40.0-8 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.0-8 install ok installed procps procps 2:4.0.4-6 install ok installed python3 python3 3.13.1-2 install ok installed python3-arcp python3-arcp 0.2.1-7 install ok installed python3-argcomplete python3-argcomplete 3.5.3-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-cachecontrol python3-cachecontrol 0.14.2-1 install ok installed python3-certifi python3-certifi 2024.12.14+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.0-1+b1 install ok installed python3-coloredlogs python3-coloredlogs 15.0.1-1 install ok installed python3-cwl-utils python3-cwl-utils 0.36-1 install ok installed python3-dateutil python3-dateutil 2.9.0-3 install ok installed python3-filelock python3-filelock 3.16.1-1 install ok installed python3-humanfriendly python3-humanfriendly 10.0-6 install ok installed python3-idna python3-idna 3.8-2 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.0-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jaraco.text python3-jaraco.text 4.0.0-1 install ok installed python3-lxml:amd64 python3-lxml 5.3.0-1+b1 install ok installed python3-minimal python3-minimal 3.13.1-2 install ok installed python3-mistune python3-mistune 3.0.2-2 install ok installed python3-more-itertools python3-more-itertools 10.5.0-1 install ok installed python3-msgpack python3-msgpack 1.0.3-3+b3 install ok installed python3-mypy-extensions python3-mypy-extensions 1.0.0-1 install ok installed python3-networkx python3-networkx 3.2.1-5 install ok installed python3-packaging python3-packaging 24.2-1 install ok installed python3-pkg-resources python3-pkg-resources 75.6.0-1 install ok installed python3-prov python3-prov 2.0.1-1 install ok installed python3-psutil python3-psutil 5.9.8-2 install ok installed python3-pydot python3-pydot 2.0.0-3 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-rdflib python3-rdflib 7.1.1-2 install ok installed python3-requests python3-requests 2.32.3+dfsg-1 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.18.6+ds-3 install ok installed python3-ruamel.yaml.clib:amd64 python3-ruamel.yaml.clib 0.2.8+ds-2+b1 install ok installed python3-schema-salad python3-schema-salad 8.8.20241206093842-1 install ok installed python3-setuptools python3-setuptools 75.6.0-1 install ok installed python3-spython python3-spython 0.3.13-2 install ok installed python3-typeguard python3-typeguard 4.4.1-1 install ok installed python3-typing-extensions python3-typing-extensions 4.12.2-2 install ok installed python3-urllib3 python3-urllib3 2.2.3-4 install ok installed python3-zipp python3-zipp 3.21.0-1 install ok installed python3.12 python3.12 3.12.8-5 install ok installed python3.12-minimal python3.12-minimal 3.12.8-5 install ok installed python3.13 python3.13 3.13.1-3 install ok installed python3.13-minimal python3.13-minimal 3.13.1-3 install ok installed r-base-core r-base-core 4.4.2-1 install ok installed r-bioc-basilisk r-bioc-basilisk 1.18.0+ds-2 install ok installed r-bioc-basilisk.utils r-bioc-basilisk.utils 1.18.0+ds-2 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.52.0-2 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.40.0-2 install ok installed r-bioc-dir.expiry r-bioc-dir.expiry 1.14.0+ds-2 install ok installed r-bioc-rcwl r-bioc-rcwl 1.22.0+ds-2 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.44.0+dfsg-2 install ok installed r-cran-backports r-cran-backports 1.5.0-2 install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-3 install ok installed r-cran-base64url r-cran-base64url 1.4-2+b1 install ok installed r-cran-batchtools r-cran-batchtools 0.9.17+dfsg-1 install ok installed r-cran-bh r-cran-bh 1.84.0-1 install ok installed r-cran-bit r-cran-bit 4.0.5-1 install ok installed r-cran-bit64 r-cran-bit64 4.0.5-1 install ok installed r-cran-brew r-cran-brew 1.0-10-1 install ok installed r-cran-bslib r-cran-bslib 0.7.0+dfsg-1 install ok installed r-cran-cachem r-cran-cachem 1.1.0-1 install ok installed r-cran-checkmate r-cran-checkmate 2.3.2-1 install ok installed r-cran-cli r-cran-cli 3.6.3-1 install ok installed r-cran-clipr r-cran-clipr 0.8.0-1 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-colorspace r-cran-colorspace 2.1-1+dfsg-1 install ok installed r-cran-commonmark r-cran-commonmark 1.9.2-2 install ok installed r-cran-cpp11 r-cran-cpp11 0.5.0-1 install ok installed r-cran-crayon r-cran-crayon 1.5.2-1 install ok installed r-cran-data.table r-cran-data.table 1.16.4+dfsg-1 install ok installed r-cran-diagrammer r-cran-diagrammer 1.0.11+ds-2 install ok installed r-cran-digest r-cran-digest 0.6.37-1 install ok installed r-cran-dplyr r-cran-dplyr 1.1.4-4 install ok installed r-cran-evaluate r-cran-evaluate 1.0.0-1 install ok installed r-cran-fansi r-cran-fansi 1.0.5-1 install ok installed r-cran-farver r-cran-farver 2.1.2-1 install ok installed r-cran-fastmap r-cran-fastmap 1.2.0-1 install ok installed r-cran-filelock r-cran-filelock 1.0.3-1 install ok installed r-cran-fontawesome r-cran-fontawesome 0.5.2-1 install ok installed r-cran-formatr r-cran-formatr 1.14-2 install ok installed r-cran-fs r-cran-fs 1.6.4+dfsg-1 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-3 install ok installed r-cran-generics r-cran-generics 0.1.3-1 install ok installed r-cran-glue r-cran-glue 1.8.0-1 install ok installed r-cran-here r-cran-here 1.0.1-2 install ok installed r-cran-highr r-cran-highr 0.11+dfsg-1 install ok installed r-cran-hms r-cran-hms 1.1.3-1 install ok installed r-cran-htmltools r-cran-htmltools 0.5.8.1-1 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.6.4+dfsg-1 install ok installed r-cran-httpuv r-cran-httpuv 1.6.15+dfsg-1 install ok installed r-cran-igraph r-cran-igraph 2.0.3-1 install ok installed r-cran-jquerylib r-cran-jquerylib 0.1.4+dfsg-4 install ok installed r-cran-jsonlite r-cran-jsonlite 1.8.9+dfsg-1 install ok installed r-cran-knitr r-cran-knitr 1.49+dfsg-1 install ok installed r-cran-labeling r-cran-labeling 0.4.3-1 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-2 install ok installed r-cran-later r-cran-later 1.3.2+dfsg-1 install ok installed r-cran-lattice r-cran-lattice 0.22-6-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.4+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.20-2 install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1 install ok installed r-cran-matrix r-cran-matrix 1.7-1-1 install ok installed r-cran-memoise r-cran-memoise 2.0.1-1 install ok installed r-cran-mime r-cran-mime 0.12-2 install ok installed r-cran-munsell r-cran-munsell 0.5.1-1 install ok installed r-cran-pillar r-cran-pillar 1.9.0+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1 install ok installed r-cran-png r-cran-png 0.1-8-1+b1 install ok installed r-cran-prettyunits r-cran-prettyunits 1.2.0-1 install ok installed r-cran-progress r-cran-progress 1.2.3-1 install ok installed r-cran-promises r-cran-promises 1.3.0+dfsg-1 install ok installed r-cran-purrr r-cran-purrr 1.0.2-1 install ok installed r-cran-r.methodss3 r-cran-r.methodss3 1.8.2-1 install ok installed r-cran-r.oo r-cran-r.oo 1.26.0-1 install ok installed r-cran-r.utils r-cran-r.utils 2.12.3-1 install ok installed r-cran-r6 r-cran-r6 2.5.1-1 install ok installed r-cran-rappdirs r-cran-rappdirs 0.3.3-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-1 install ok installed r-cran-rcpp r-cran-rcpp 1.0.13-1-1 install ok installed r-cran-rcpptoml r-cran-rcpptoml 0.2.2+dfsg-1 install ok installed r-cran-readr r-cran-readr 2.1.5-1 install ok installed r-cran-reticulate r-cran-reticulate 1.39.0+dfsg-1 install ok installed r-cran-rlang r-cran-rlang 1.1.4-1 install ok installed r-cran-rmarkdown r-cran-rmarkdown 2.28+dfsg-1 install ok installed r-cran-rprojroot r-cran-rprojroot 2.0.4-1 install ok installed r-cran-rstudioapi r-cran-rstudioapi 0.17.1-1 install ok installed r-cran-sass r-cran-sass 0.4.9+dfsg-1 install ok installed r-cran-scales r-cran-scales 1.3.0-1 install ok installed r-cran-shiny r-cran-shiny 1.9.1+dfsg-1 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-1-1 install ok installed r-cran-stringi r-cran-stringi 1.8.4-1 install ok installed r-cran-stringr r-cran-stringr 1.5.1-1 install ok installed r-cran-tibble r-cran-tibble 3.2.1+dfsg-2 install ok installed r-cran-tidyr r-cran-tidyr 1.3.1-1 install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.1+dfsg-1 install ok installed r-cran-tinytex r-cran-tinytex 0.53-1 install ok installed r-cran-tzdb r-cran-tzdb 0.4.0-2 install ok installed r-cran-utf8 r-cran-utf8 1.2.4-1 install ok installed r-cran-vctrs r-cran-vctrs 0.6.5-1 install ok installed r-cran-viridislite r-cran-viridislite 0.4.2-2 install ok installed r-cran-visnetwork r-cran-visnetwork 2.1.2+ds-1 install ok installed r-cran-vroom r-cran-vroom 1.6.5-1 install ok installed r-cran-withr r-cran-withr 3.0.2+dfsg-1 install ok installed r-cran-xfun r-cran-xfun 0.49+dfsg-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-4-2 install ok installed r-cran-yaml r-cran-yaml 2.3.10-1 install ok installed readline-common readline-common 8.2-6 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sqv sqv 1.2.1-5 install ok installed sysvinit-utils sysvinit-utils 3.13-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2024b-5 install ok installed ucf ucf 3.0046 install ok installed unzip unzip 6.0-28 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.3-1 install ok installed x11-common x11-common 1:7.7+23.2 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed zip zip 3.0-14 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', 'remove', 'ca-certificates', 'cwl-upgrader', 'cwltool', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'graphviz', 'javascript-common', 'libabsl20230802:amd64', 'libamd3:amd64', 'libann0', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdt5:amd64', 'libcgraph6:amd64', 'libcolamd3:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5t64:amd64', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'perl', 'perl-modules-5.40', 'procps', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-autocommand', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-schema-salad', 'python3-setuptools', 'python3-spython', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3-zipp', 'python3.12', 'python3.12-minimal', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-basilisk.utils', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-munsell', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-rcwl'] 1m4.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax graphviz javascript-common libabsl20230802 libamd3 libann0 libaom3 libasan8 libatomic1 libavif16 libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcdt5 libcgraph6 libcolamd3 libcrypt-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgcc-14-dev libgcrypt20 libgd3 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu72 libidn2-0 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 libldap-2.5-0 liblerc4 liblsan0 libltdl7 liblua5.4-0 libncursesw6 libnghttp2-14 libnsl2 libnuma1 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 libraqm0 librav1e0.7 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-14-dev libsuitesparseconfig7 libsvtav1enc2 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 linux-libc-dev littler media-types netbase node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data perl perl-modules-5.40 procps python3 python3-arcp python3-argcomplete python3-autocommand python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-lxml python3-minimal python3-mistune python3-more-itertools python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-pkg-resources python3-prov python3-psutil python3-pydot python3-pyparsing python3-rdflib python3-requests python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-setuptools python3-spython python3-typeguard python3-typing-extensions python3-urllib3 python3-zipp python3.12 python3.12-minimal python3.13 python3.13-minimal r-base-core r-bioc-basilisk r-bioc-basilisk.utils r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-rcwl r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-munsell r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip 0 upgraded, 0 newly installed, 337 to remove and 0 not upgraded. After this operation, 1078 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57974 files and directories currently installed.) Removing r-bioc-rcwl (1.22.0+ds-2) ... Removing cwltool (3.1.20241112140730-1) ... Removing python3-cwl-utils (0.36-1) ... Removing r-bioc-basilisk (1.18.0+ds-2) ... Removing r-cran-reticulate (1.39.0+dfsg-1) ... Removing r-bioc-biocparallel (1.40.0-2) ... Removing r-cran-snow (1:0.4.4-2) ... Removing cwl-upgrader (1.2.12-1) ... Removing python3-pydot (2.0.0-3) ... Removing graphviz (2.42.4-2+b2) ... Removing libgvc6 (2.42.4-2+b2) ... Removing libgd3:amd64 (2.3.3-12+b1) ... Removing r-cran-diagrammer (1.0.11+ds-2) ... Removing r-cran-visnetwork (2.1.2+ds-1) ... Removing r-cran-htmlwidgets (1.6.4+dfsg-1) ... Removing r-cran-rmarkdown (2.28+dfsg-1) ... Removing r-cran-shiny (1.9.1+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing r-cran-knitr (1.49+dfsg-1) ... Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... Removing r-cran-bslib (0.7.0+dfsg-1) ... Removing libjs-bootstrap4 (4.6.1+dfsg1-4) ... Removing libjs-popper.js (1.16.1+ds-6) ... Removing javascript-common (11+nmu1) ... Removing libavif16:amd64 (1.1.1-1) ... Removing libgav1-1:amd64 (0.19.0-3) ... Removing libabsl20230802:amd64 (20230802.1-4) ... Removing r-cran-igraph (2.0.3-1) ... Removing libglpk40:amd64 (5.0-1+b2) ... Removing libamd3:amd64 (1:7.8.3+dfsg-2) ... Removing libann0 (1.1.2+doc-9+b1) ... Removing libaom3:amd64 (3.11.0-1) ... Removing r-cran-bh (1.84.0-1) ... Removing libboost-dev:amd64 (1.83.0.2+b2) ... Removing libboost1.83-dev:amd64 (1.83.0-4) ... Removing libstdc++-14-dev:amd64 (14.2.0-13) ... Removing libgcc-14-dev:amd64 (14.2.0-13) ... Removing libasan8:amd64 (14.2.0-13) ... Removing libraqm0:amd64 (0.10.2-1) ... Removing libc6-dev:amd64 (2.40-5) ... Removing libc-dev-bin (2.40-5) ... Removing libgvpr2:amd64 (2.42.4-2+b2) ... Removing libcgraph6:amd64 (2.42.4-2+b2) ... Removing libcdt5:amd64 (2.42.4-2+b2) ... Removing libcolamd3:amd64 (1:7.8.3+dfsg-2) ... Removing libcrypt-dev:amd64 (1:4.4.36-5) ... Removing python3-setuptools (75.6.0-1) ... Removing python3-prov (2.0.1-1) ... Removing python3-coloredlogs (15.0.1-1) ... Removing python3-humanfriendly (10.0-6) ... Removing python3-psutil (5.9.8-2) ... Removing python3-networkx (3.2.1-5) ... Removing python3-jaraco.text (4.0.0-1) ... Removing python3.12 (3.12.8-5) ... Removing python3.12-minimal (3.12.8-5) ... Removing libpython3.12-stdlib:amd64 (3.12.8-5) ... Removing python3-lxml:amd64 (5.3.0-1+b1) ... Removing libxslt1.1:amd64 (1.1.35-1.1+b1) ... Removing libgcrypt20:amd64 (1.11.0-7) ... Removing libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... Removing r-cran-batchtools (0.9.17+dfsg-1) ... Removing r-cran-data.table (1.16.4+dfsg-1) ... Removing libgpg-error0:amd64 (1.51-3) ... Removing libnsl2:amd64 (1.3.0-3+b3) ... Removing libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2+b1) ... Removing libhwasan0:amd64 (14.2.0-13) ... Removing libxaw7:amd64 (2:1.0.16-1) ... Removing libxmu6:amd64 (2:1.1.3-3+b4) ... Removing r-cran-tidyr (1.3.1-1) ... Removing r-cran-stringr (1.5.1-1) ... Removing r-cran-stringi (1.8.4-1) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Removing libimagequant0:amd64 (2.18.0-1+b2) ... Removing libitm1:amd64 (14.2.0-13) ... Removing libyuv0:amd64 (0.0.1899.20250103-1) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-es5-shim (4.6.7-2) ... Removing r-cran-highr (0.11+dfsg-1) ... Removing libjs-highlight.js (9.18.5+dfsg1-2) ... Removing r-cran-jquerylib (0.1.4+dfsg-4) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Removing libjs-jquery-datatables (1.11.5+dfsg-2) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-json (0~20221030+~1.0.8-1) ... Removing libjs-microplugin.js (0.0.3+dfsg-1.1) ... Removing libjs-modernizr (3.13.0-0.1) ... Removing libjs-prettify (2015.12.04+dfsg-1.1) ... Removing libjs-sifter.js (0.6.0+dfsg-3) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Removing liblab-gamut1:amd64 (2.42.4-2+b2) ... Removing liblsan0:amd64 (14.2.0-13) ... Removing libltdl7:amd64 (2.5.4-2) ... Removing pandoc (3.1.11.1+ds-2) ... Removing liblua5.4-0:amd64 (5.4.7-1+b2) ... Removing libnuma1:amd64 (2.0.18-1+b1) ... Removing libpathplan4:amd64 (2.42.4-2+b2) ... Removing r-cran-png (0.1-8-1+b1) ... Removing libpython3.12-minimal:amd64 (3.12.8-5) ... Removing libquadmath0:amd64 (14.2.0-13) ... Removing librav1e0.7:amd64 (0.7.1-9) ... Removing libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Removing libtsan2:amd64 (14.2.0-13) ... Removing libubsan1:amd64 (14.2.0-13) ... Removing r-cran-httpuv (1.6.15+dfsg-1) ... Removing r-cran-sass (0.4.9+dfsg-1) ... Removing r-cran-fs (1.6.4+dfsg-1) ... Removing libuv1t64:amd64 (1.48.0-7) ... Removing libxpm4:amd64 (1:3.5.17-1+b3) ... Removing libyaml-0-2:amd64 (0.2.5-2) ... Removing linux-libc-dev (6.12.9-1) ... Removing r-cran-readr (2.1.5-1) ... Removing r-cran-rcpptoml (0.2.2+dfsg-1) ... Removing littler (0.3.20-2) ... Removing node-bootstrap-sass (3.4.3-2) ... Removing node-html5shiv (3.7.3+dfsg-5) ... Removing node-normalize.css (8.0.1-5) ... Removing pandoc-data (3.1.11.1-3) ... Removing python3-arcp (0.2.1-7) ... Removing python3-argcomplete (3.5.3-1) ... Removing python3-dateutil (2.9.0-3) ... Removing python3-packaging (24.2-1) ... Removing python3-spython (0.3.13-2) ... Removing python3-zipp (3.21.0-1) ... Removing r-bioc-basilisk.utils (1.18.0+ds-2) ... Removing r-bioc-s4vectors (0.44.0+dfsg-2) ... Removing r-bioc-dir.expiry (1.14.0+ds-2) ... Removing r-bioc-biocgenerics (0.52.0-2) ... Removing r-cran-checkmate (2.3.2-1) ... Removing r-cran-base64url (1.4-2+b1) ... Removing r-cran-backports (1.5.0-2) ... Removing r-cran-fontawesome (0.5.2-1) ... Removing r-cran-htmltools (0.5.8.1-1) ... Removing r-cran-base64enc (0.1-3-3) ... Removing r-cran-vroom (1.6.5-1) ... Removing r-cran-bit64 (4.0.5-1) ... Removing r-cran-bit (4.0.5-1) ... Removing r-cran-brew (1.0-10-1) ... Removing r-cran-memoise (2.0.1-1) ... Removing r-cran-cachem (1.1.0-1) ... Removing r-cran-dplyr (1.1.4-4) ... Removing r-cran-tidyselect (1.2.1+dfsg-1) ... Removing r-cran-tibble (3.2.1+dfsg-2) ... Removing r-cran-scales (1.3.0-1) ... Removing r-cran-clipr (0.8.0-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-munsell (0.5.1-1) ... Removing r-cran-colorspace (2.1-1+dfsg-1) ... Removing r-cran-commonmark (1.9.2-2) ... Removing r-cran-tzdb (0.4.0-2) ... Removing r-cran-cpp11 (0.5.0-1) ... Removing r-cran-progress (1.2.3-1) ... Removing r-cran-crayon (1.5.2-1) ... Removing r-cran-digest (0.6.37-1) ... Removing r-cran-evaluate (1.0.0-1) ... Removing r-cran-pillar (1.9.0+dfsg-1) ... Removing r-cran-fansi (1.0.5-1) ... Removing r-cran-farver (2.1.2-1) ... Removing r-cran-promises (1.3.0+dfsg-1) ... Removing r-cran-fastmap (1.2.0-1) ... Removing r-cran-filelock (1.0.3-1) ... Removing r-cran-futile.logger (1.4.3-4) ... Removing r-cran-lambda.r (1.2.4-2) ... Removing r-cran-formatr (1.14-2) ... Removing r-cran-futile.options (1.0.1-3) ... Removing r-cran-generics (0.1.3-1) ... Removing r-cran-purrr (1.0.2-1) ... Removing r-cran-here (1.0.1-2) ... Removing r-cran-hms (1.1.3-1) ... Removing r-cran-jsonlite (1.8.9+dfsg-1) ... Removing r-cran-labeling (0.4.3-1) ... Removing r-cran-later (1.3.2+dfsg-1) ... Removing r-cran-magrittr (2.0.3-1) ... Removing r-cran-mime (0.12-2) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-prettyunits (1.2.0-1) ... Removing r-cran-r.utils (2.12.3-1) ... Removing r-cran-r.oo (1.26.0-1) ... Removing r-cran-r.methodss3 (1.8.2-1) ... Removing r-cran-r6 (2.5.1-1) ... Removing r-cran-rappdirs (0.3.3-1) ... Removing r-cran-rcolorbrewer (1.1-3-1) ... Removing r-cran-rprojroot (2.0.4-1) ... Removing r-cran-rstudioapi (0.17.1-1) ... Removing r-cran-sourcetools (0.1.7-1-1) ... Removing r-cran-tinytex (0.53-1) ... Removing r-cran-utf8 (1.2.4-1) ... Removing r-cran-viridislite (0.4.2-2) ... Removing r-cran-withr (3.0.2+dfsg-1) ... Removing r-cran-xfun (0.49+dfsg-1) ... Removing r-cran-xtable (1:1.8-4-2) ... Removing r-cran-yaml (2.3.10-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing python3-schema-salad (8.8.20241206093842-1) ... Removing python3-cachecontrol (0.14.2-1) ... Removing python3-requests (2.32.3+dfsg-1) ... Removing r-cran-matrix (1.7-1-1) ... Removing libjs-bootstrap (3.4.1+dfsg-3) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Removing python3-ruamel.yaml (0.18.6+ds-3) ... Removing python3-ruamel.yaml.clib:amd64 (0.2.8+ds-2+b1) ... Removing python3-rdflib (7.1.1-2) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing r-cran-rcpp (1.0.13-1-1) ... Removing python3-certifi (2024.12.14+ds-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.4.0-1+b1) ... Removing python3-filelock (3.16.1-1) ... Removing python3-idna (3.8-2) ... Removing python3-mistune (3.0.2-2) ... Removing python3-msgpack (1.0.3-3+b3) ... Removing python3-mypy-extensions (1.0.0-1) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-urllib3 (2.2.3-4) ... Removing r-cran-vctrs (0.6.5-1) ... Removing r-cran-lifecycle (1.0.4+dfsg-1) ... Removing r-cran-glue (1.8.0-1) ... Removing r-cran-lattice (0.22-6-1) ... Removing r-cran-littler (0.3.20-2) ... Removing r-cran-pkgkitten (0.2.4-1) ... Removing r-cran-rlang (1.1.4-1) ... Removing python3-pkg-resources (75.6.0-1) ... Removing python3-inflect (7.3.1-2) ... Removing python3-typeguard (4.4.1-1) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-jaraco.context (6.0.0-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.5.0-1) ... Removing python3-typing-extensions (4.12.2-2) ... Removing r-cran-cli (3.6.3-1) ... Removing r-base-core (4.4.2-1) ... Removing ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.55.0+ds-3) ... Removing libpangoft2-1.0-0:amd64 (1.55.0+ds-3) ... Removing libpango-1.0-0:amd64 (1.55.0+ds-3) ... Removing fontconfig (2.15.0-2) ... Removing libtk8.6:amd64 (8.6.16-1) ... Removing libxft2:amd64 (2.3.6-1+b3) ... Removing libharfbuzz0b:amd64 (10.1.0-2) ... Removing libglib2.0-0t64:amd64 (2.82.4-1) ... Removing libatomic1:amd64 (14.2.0-13) ... Removing liblapack3:amd64 (3.12.0-4) ... Removing libblas3:amd64 (3.12.0-4) ... Removing libcairo2:amd64 (1.18.2-2) ... Removing libcurl4t64:amd64 (8.11.1-1) ... Removing libthai0:amd64 (0.1.29-2+b1) ... Removing libdatrie1:amd64 (0.2.13-3+b1) ... Removing libtiff6:amd64 (4.5.1+git230720-5) ... Removing libdeflate0:amd64 (1.22-1) ... Removing python3 (3.13.1-2) ... Removing python3.13 (3.13.1-3) ... Removing python3-minimal (3.13.1-2) ... Removing python3.13-minimal (3.13.1-3) ... Removing libpython3-stdlib:amd64 (3.13.1-2) ... Removing libpython3.13-stdlib:amd64 (3.13.1-3) ... find: '/usr/lib/python3': No such file or directory Removing libfribidi0:amd64 (1.0.16-1) ... Removing ucf (3.0046) ... Removing perl (5.40.0-8) ... Removing libperl5.40:amd64 (5.40.0-8) ... Removing libgdbm-compat4t64:amd64 (1.24-2) ... Removing libgdbm6t64:amd64 (1.24-2) ... Removing libgfortran5:amd64 (14.2.0-13) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libldap-2.5-0:amd64 (2.5.19+dfsg-1) ... Removing libgnutls30t64:amd64 (3.8.8-2) ... Removing libgomp1:amd64 (14.2.0-13) ... Removing libgraphite2-3:amd64 (1.3.14-2+b1) ... Removing libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-3) ... Removing libxt6t64:amd64 (1:1.2.1-1.2+b2) ... Removing libsm6:amd64 (2:1.2.4-1) ... Removing libice6:amd64 (2:1.1.1-1) ... Removing libicu72:amd64 (72.1-6) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.7-2+b1) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Removing libkrb5-3:amd64 (1.21.3-3) ... Removing libk5crypto3:amd64 (1.21.3-3) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-3) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing procps (2:4.0.4-6) ... Removing libncursesw6:amd64 (6.5-2+b1) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libpaper-utils (2.2.5-0.3) ... Removing libpaper2:amd64 (2.2.5-0.3) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libproc2-0:amd64 (2:4.0.4-6) ... Removing libpython3.13-minimal:amd64 (3.13.1-3) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Removing libwebp7:amd64 (1.5.0-0.1) ... Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtasn1-6:amd64 (4.19.0-3+b3) ... Removing libtcl8.6:amd64 (8.6.16+dfsg-1) ... Removing libthai-data (0.1.29-2) ... Removing libtirpc-common (1.3.4+ds-1.3) ... Removing libunistring5:amd64 (1.3-1) ... Removing libxss1:amd64 (1:1.2.3-1+b3) ... Removing libxrender1:amd64 (1:0.9.10-1.1+b3) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing openssl (3.4.0-2) ... Removing perl-modules-5.40 (5.40.0-8) ... Removing readline-common (8.2-6) ... Removing sensible-utils (0.0.24) ... Removing unzip (6.0-28) ... Removing x11-common (1:7.7+23.2) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-14) ... Removing libfontconfig1:amd64 (2.15.0-2) ... Removing fontconfig-config (2.15.0-2) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2+b6) ... Removing libexpat1:amd64 (2.6.4-1) ... Removing libffi8:amd64 (3.4.6-1) ... Removing libpng16-16t64:amd64 (1.6.45-1) ... Removing libx11-6:amd64 (2:1.8.10-2) ... Removing libx11-data (2:1.8.10-2) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing libheif1:amd64 (1.19.5-1) ... Removing libheif-plugin-libde265:amd64 (1.19.5-1) ... Removing libde265-0:amd64 (1.0.15-1+b2) ... Removing libsharpyuv0:amd64 (1.5.0-0.1) ... Removing libheif-plugin-dav1d:amd64 (1.19.5-1) ... Removing libdav1d7:amd64 (1.5.0-1+b1) ... Processing triggers for libc-bin (2.40-5) ... 1m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', 'remove', 'ca-certificates', 'cwl-upgrader', 'cwltool', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'graphviz', 'javascript-common', 'libabsl20230802:amd64', 'libamd3:amd64', 'libann0', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdt5:amd64', 'libcgraph6:amd64', 'libcolamd3:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5t64:amd64', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'perl', 'perl-modules-5.40', 'procps', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-autocommand', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-schema-salad', 'python3-setuptools', 'python3-spython', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3-zipp', 'python3.12', 'python3.12-minimal', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-basilisk.utils', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-munsell', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-rcwl'] 1m4.5s INFO: Running scripts post_remove 1m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_remove_exceptions'] 1m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_remove_exceptions'] 1m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg', '--purge', 'ca-certificates', 'cwl-upgrader', 'cwltool', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'graphviz', 'javascript-common', 'libabsl20230802:amd64', 'libamd3:amd64', 'libann0', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdt5:amd64', 'libcgraph6:amd64', 'libcolamd3:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5t64:amd64', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'perl', 'perl-modules-5.40', 'procps', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-autocommand', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-schema-salad', 'python3-setuptools', 'python3-spython', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3-zipp', 'python3.12', 'python3.12-minimal', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-basilisk.utils', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-munsell', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m4.8s DUMP: (Reading database ... 5102 files and directories currently installed.) Purging configuration files for ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cwl-upgrader which isn't installed dpkg: warning: ignoring request to remove cwltool which isn't installed Purging configuration files for fontconfig (2.15.0-2) ... Purging configuration files for fontconfig-config (2.15.0-2) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed Purging configuration files for graphviz (2.42.4-2+b2) ... Purging configuration files for javascript-common (11+nmu1) ... dpkg: warning: ignoring request to remove libabsl20230802 which isn't installed dpkg: warning: ignoring request to remove libamd3 which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed dpkg: warning: ignoring request to remove libaom3 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libavif16 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libcolamd3 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-5) ... dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdav1d7 which isn't installed dpkg: warning: ignoring request to remove libde265-0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgav1-1 which isn't installed dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed dpkg: warning: ignoring request to remove libgcrypt20 which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.82.4-1) ... dpkg: warning: ignoring request to remove libglpk40 which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpg-error0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-3) ... dpkg: warning: ignoring request to remove libgts-0.7-5t64 which isn't installed Purging configuration files for libgvc6 (2.42.4-2+b2) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libheif-plugin-dav1d which isn't installed dpkg: warning: ignoring request to remove libheif-plugin-libde265 which isn't installed dpkg: warning: ignoring request to remove libheif1 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed Purging configuration files for libjs-bootstrap4 (4.6.1+dfsg1-4) ... dpkg: warning: ignoring request to remove libjs-d3 which isn't installed dpkg: warning: ignoring request to remove libjs-es5-shim which isn't installed dpkg: warning: ignoring request to remove libjs-highlight.js which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-datatables which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-selectize.js which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-json which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove libjs-microplugin.js which isn't installed dpkg: warning: ignoring request to remove libjs-modernizr which isn't installed Purging configuration files for libjs-popper.js (1.16.1+ds-6) ... dpkg: warning: ignoring request to remove libjs-prettify which isn't installed dpkg: warning: ignoring request to remove libjs-sifter.js which isn't installed dpkg: warning: ignoring request to remove libjs-twitter-bootstrap-datepicker which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblab-gamut1 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove liblua5.4-0 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper2:amd64 (2.2.5-0.3) ... dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove libperl5.40 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.8-5) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.1-3) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove librav1e0.7 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed dpkg: warning: ignoring request to remove libsuitesparseconfig7 which isn't installed dpkg: warning: ignoring request to remove libsvtav1enc2 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1.3) ... Purging configuration files for libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed dpkg: warning: ignoring request to remove libuv1t64 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6t64 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libyuv0 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... dpkg: warning: ignoring request to remove node-bootstrap-sass which isn't installed dpkg: warning: ignoring request to remove node-html5shiv which isn't installed dpkg: warning: ignoring request to remove node-normalize.css which isn't installed Purging configuration files for openssl (3.4.0-2) ... dpkg: warning: ignoring request to remove pandoc which isn't installed dpkg: warning: ignoring request to remove pandoc-data which isn't installed Purging configuration files for perl (5.40.0-8) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed Purging configuration files for procps (2:4.0.4-6) ... Purging configuration files for python3 (3.13.1-2) ... dpkg: warning: ignoring request to remove python3-arcp which isn't installed Purging configuration files for python3-argcomplete (3.5.3-1) ... dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-cachecontrol which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-coloredlogs which isn't installed dpkg: warning: ignoring request to remove python3-cwl-utils which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-filelock which isn't installed dpkg: warning: ignoring request to remove python3-humanfriendly which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.text which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mistune which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-msgpack which isn't installed dpkg: warning: ignoring request to remove python3-mypy-extensions which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-prov which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pydot which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-rdflib which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml.clib which isn't installed dpkg: warning: ignoring request to remove python3-schema-salad which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-spython which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.8-5) ... dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.1-3) ... Purging configuration files for r-base-core (4.4.2-1) ... dpkg: warning: ignoring request to remove r-bioc-basilisk which isn't installed dpkg: warning: ignoring request to remove r-bioc-basilisk.utils which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-dir.expiry which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-cran-backports which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-base64url which isn't installed dpkg: warning: ignoring request to remove r-cran-batchtools which isn't installed dpkg: warning: ignoring request to remove r-cran-bh which isn't installed dpkg: warning: ignoring request to remove r-cran-bit which isn't installed dpkg: warning: ignoring request to remove r-cran-bit64 which isn't installed dpkg: warning: ignoring request to remove r-cran-brew which isn't installed dpkg: warning: ignoring request to remove r-cran-bslib which isn't installed dpkg: warning: ignoring request to remove r-cran-cachem which isn't installed dpkg: warning: ignoring request to remove r-cran-checkmate which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-clipr which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-commonmark which isn't installed dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed dpkg: warning: ignoring request to remove r-cran-diagrammer which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-farver which isn't installed dpkg: warning: ignoring request to remove r-cran-fastmap which isn't installed dpkg: warning: ignoring request to remove r-cran-filelock which isn't installed dpkg: warning: ignoring request to remove r-cran-fontawesome which isn't installed dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed dpkg: warning: ignoring request to remove r-cran-fs which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-generics which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-here which isn't installed dpkg: warning: ignoring request to remove r-cran-highr which isn't installed dpkg: warning: ignoring request to remove r-cran-hms which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which isn't installed dpkg: warning: ignoring request to remove r-cran-httpuv which isn't installed dpkg: warning: ignoring request to remove r-cran-igraph which isn't installed dpkg: warning: ignoring request to remove r-cran-jquerylib which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-later which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-progress which isn't installed dpkg: warning: ignoring request to remove r-cran-promises which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-r.methodss3 which isn't installed dpkg: warning: ignoring request to remove r-cran-r.oo which isn't installed dpkg: warning: ignoring request to remove r-cran-r.utils which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rappdirs which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpptoml which isn't installed dpkg: warning: ignoring request to remove r-cran-readr which isn't installed dpkg: warning: ignoring request to remove r-cran-reticulate which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-rmarkdown which isn't installed dpkg: warning: ignoring request to remove r-cran-rprojroot which isn't installed dpkg: warning: ignoring request to remove r-cran-rstudioapi which isn't installed dpkg: warning: ignoring request to remove r-cran-sass which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-shiny which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-sourcetools which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-tinytex which isn't installed dpkg: warning: ignoring request to remove r-cran-tzdb which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-visnetwork which isn't installed dpkg: warning: ignoring request to remove r-cran-vroom which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xfun which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed Purging configuration files for readline-common (8.2-6) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for ucf (3.0046) ... Purging configuration files for unzip (6.0-28) ... Purging configuration files for x11-common (1:7.7+23.2) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 1m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg', '--purge', 'ca-certificates', 'cwl-upgrader', 'cwltool', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'graphviz', 'javascript-common', 'libabsl20230802:amd64', 'libamd3:amd64', 'libann0', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdt5:amd64', 'libcgraph6:amd64', 'libcolamd3:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5t64:amd64', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'perl', 'perl-modules-5.40', 'procps', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-autocommand', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-schema-salad', 'python3-setuptools', 'python3-spython', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3-zipp', 'python3.12', 'python3.12-minimal', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-basilisk.utils', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-munsell', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg', '--purge', 'r-bioc-rcwl'] 1m4.8s DUMP: dpkg: warning: ignoring request to remove r-bioc-rcwl which isn't installed 1m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg', '--purge', 'r-bioc-rcwl'] 1m4.8s INFO: Running scripts post_purge 1m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_purge_exceptions'] 1m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_purge_exceptions'] 1m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg', '--purge', '--pending'] 1m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg', '--purge', '--pending'] 1m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg', '--remove', '--pending'] 1m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg', '--remove', '--pending'] 1m4.8s INFO: Running scripts post_test 1m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_test_exceptions'] 1m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'tmp/scripts/post_test_exceptions'] 1m4.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 1m5.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 1m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg-divert', '--list'] 1m5.0s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'dpkg-divert', '--list'] 1m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', 'clean'] 1m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnu19wumj', 'apt-get', 'clean'] 1m5.1s DEBUG: Recording chroot state 1m5.4s INFO: Warning: Package purging left files on system: /etc/fonts/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned 1m5.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/shm'] 1m5.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/shm'] 1m5.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/console'] 1m5.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/console'] 1m5.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/ptmx'] 1m5.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/ptmx'] 1m5.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/pts'] 1m5.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/dev/pts'] 1m5.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/proc'] 1m5.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnu19wumj/proc'] 1m5.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 1m5.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpnu19wumj'] 1m5.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpnu19wumj 1m5.7s INFO: PASS: Upgrading between Debian distributions. 1m5.7s INFO: PASS: All tests. 1m5.7s INFO: piuparts run ends. ret=0 End: 2025-01-12 16:12:40 GMT