Start: 2022-09-30 21:59:04 GMT [testing] Package: racon Version: 1.5.0-2 Installed-Size: 3167 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.32), libedlib1 (>= 1.2.7-3~), libgcc-s1 (>= 3.0), libspoa7.0.0 (>= 4.0.5+ds), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4) Recommends: python3, rampler Description: consensus module for raw de novo DNA assembly of long uncorrected reads Homepage: https://github.com/lbcb-sci/racon Description-md5: 0245f53dd68b53cce76f4a5dd8d8a554 Section: science Priority: optional Filename: pool/main/r/racon/racon_1.5.0-2_amd64.deb Size: 3113024 MD5sum: a550192b4bc5410473142d4638b10bbf SHA256: f03b2e5df56b6f36f84ef7999d56fc5e3aac904aac8e470ed4eb4340a1b0cb47 [sid] Package: racon Version: 1.5.0-3 Installed-Size: 3167 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libedlib1 (>= 1.2.7-3~), libgcc-s1 (>= 3.0), libspoa7.0.0 (>= 4.0.5), libstdc++6 (>= 12), zlib1g (>= 1:1.1.4) Recommends: python3, rampler Description: consensus module for raw de novo DNA assembly of long uncorrected reads Homepage: https://github.com/lbcb-sci/racon Description-md5: 0245f53dd68b53cce76f4a5dd8d8a554 Section: science Priority: optional Filename: pool/main/r/racon/racon_1.5.0-3_amd64.deb Size: 3115248 MD5sum: 602de8da7f51b1ac954f76963f5399a6 SHA256: eba84b0023a9c8748a5fae490d259993f306b0d2e1b9c2efb89535d5458a9241 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt racon=1.5.0-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt racon=1.5.0-3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp0i8hrd51 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp0i8hrd51 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/proc'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/proc'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/pts'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/pts'] 0m2.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/ptmx'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/ptmx'] 0m2.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/console'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/console'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/shm'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/shm'] 0m2.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.3s DEBUG: Created policy-rc.d and chmodded it. 0m2.3s DEBUG: Created resolv.conf. 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp0i8hrd51/tmp/scripts/ 0m2.3s INFO: Running scripts post_chroot_unpack 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', 'update'] 0m5.5s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [161 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8462 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5763 kB] Fetched 14.4 MB in 2s (6381 kB/s) Reading package lists... 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', 'update'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3763 kB of archives. After this operation, 636 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.35-1 [2941 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.35-1 [822 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3763 kB in 0s (32.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8606 files and directories currently installed.) Preparing to unpack .../libc6_2.35-1_amd64.deb ... Unpacking libc6:amd64 (2.35-1) over (2.34-8) ... Setting up libc6:amd64 (2.35-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8605 files and directories currently installed.) Preparing to unpack .../libc-bin_2.35-1_amd64.deb ... Unpacking libc-bin (2.35-1) over (2.34-8) ... Setting up libc-bin (2.35-1) ... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.4s DUMP: 0a566a6b065aa7d008b1b4f8b545d504 - 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.4s INFO: Running scripts post_setup 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_setup_dummy_users'] 0m10.0s DUMP: useradd warning: dummy100's uid 100 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1000's uid 1000 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1001's uid 1001 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1002's uid 1002 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1003's uid 1003 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1004's uid 1004 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1005's uid 1005 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1006's uid 1006 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1007's uid 1007 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1008's uid 1008 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1009's uid 1009 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1010's uid 1010 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_setup_dummy_users'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_setup_forbid_home'] 0m10.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_setup_forbid_home'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_setup_minimize'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_setup_minimize'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_setup_zz_backports'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_setup_zz_backports'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.2s DUMP: install ok installed adduser adduser 3.129 install ok installed apt apt 2.5.2 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2~rc2-2 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed coreutils coreutils 8.32-4.1+b1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-3 install ok installed gpgv gpgv 2.2.39-1 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.2 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.35-1 install ok installed libc6:amd64 libc6 2.35-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.264 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-2 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-2 install ok installed libgdbm6:amd64 libgdbm6 1.23-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-2 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-2 install ok installed libpam-runtime libpam-runtime 1.5.2-2 install ok installed libpam0g:amd64 libpam0g 1.5.2-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libperl5.34:amd64 libperl5.34 5.34.0-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b2 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b2 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libss2:amd64 libss2 1.46.6~rc1-1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 251.4-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-2 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.4-3 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.6~rc1-1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl perl 5.34.0-5 install ok installed perl-base perl-base 5.34.0-5 install ok installed perl-modules-5.34 perl-modules-5.34 5.34.0-5 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.05-6 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022c-1 install ok installed usr-is-merged usr-is-merged 31 install ok installed usrmerge usrmerge 31 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m10.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m10.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m10.7s INFO: Running scripts is_testable 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/is_testable_uninstallable'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/is_testable_uninstallable'] 0m10.7s INFO: Running scripts pre_test 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_test_exceptions'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_test_exceptions'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_test_root_password'] 0m10.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_test_root_password'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'show', '--no-all-versions', 'racon'] 0m11.0s DUMP: Package: racon Version: 1.5.0-2 Installed-Size: 3167 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.32), libedlib1 (>= 1.2.7-3~), libgcc-s1 (>= 3.0), libspoa7.0.0 (>= 4.0.5+ds), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4) Recommends: python3, rampler Description-en: consensus module for raw de novo DNA assembly of long uncorrected reads Racon is intended as a standalone consensus module to correct raw contigs generated by rapid assembly methods which do not include a consensus step. The goal of Racon is to generate genomic consensus which is of similar or better quality compared to the output generated by assembly methods which employ both error correction and consensus steps, while providing a speedup of several times compared to those methods. It supports data produced by both Pacific Biosciences and Oxford Nanopore Technologies. . Racon can be used as a polishing tool after the assembly with either Illumina data or data produced by third generation of sequencing. The type of data inputed is automatically detected. . Racon takes as input only three files: contigs in FASTA/FASTQ format, reads in FASTA/FASTQ format and overlaps/alignments between the reads and the contigs in MHAP/PAF/SAM format. Output is a set of polished contigs in FASTA format printed to stdout. All input files can be compressed with gzip. . Racon can also be used as a read error-correction tool. In this scenario, the MHAP/PAF/SAM file needs to contain pairwise overlaps between reads including dual overlaps. . A wrapper script is also available to enable easier usage to the end- user for large datasets. It has the same interface as racon but adds two additional features from the outside. Sequences can be subsampled to decrease the total execution time (accuracy might be lower) while target sequences can be split into smaller chunks and run sequentially to decrease memory consumption. Both features can be run at the same time as well. Description-md5: 0245f53dd68b53cce76f4a5dd8d8a554 Homepage: https://github.com/lbcb-sci/racon Section: science Priority: optional Filename: pool/main/r/racon/racon_1.5.0-2_amd64.deb Size: 3113024 MD5sum: a550192b4bc5410473142d4638b10bbf SHA256: f03b2e5df56b6f36f84ef7999d56fc5e3aac904aac8e470ed4eb4340a1b0cb47 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'show', '--no-all-versions', 'racon'] 0m11.0s INFO: apt-cache knows about the following packages: racon 0m11.0s INFO: Running scripts pre_install 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_database-server'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_database-server'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_exceptions'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_exceptions'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_extras'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_extras'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'policy'] 0m11.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'policy'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'policy', 'racon'] 0m11.3s DUMP: racon: Installed: (none) Candidate: 1.5.0-2 Version table: 1.5.0-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'policy', 'racon'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', '-y', 'install', 'racon'] 0m12.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libedlib1 libspoa7.0.0 Recommended packages: python3 rampler The following NEW packages will be installed: libedlib1 libspoa7.0.0 racon 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 3200 kB of archives. After this operation, 3585 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libedlib1 amd64 1.2.7-3+b1 [17.4 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libspoa7.0.0 amd64 4.0.7+ds-3 [69.7 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 racon amd64 1.5.0-2 [3113 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3200 kB in 0s (45.7 MB/s) Selecting previously unselected package libedlib1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8606 files and directories currently installed.) Preparing to unpack .../libedlib1_1.2.7-3+b1_amd64.deb ... Unpacking libedlib1:amd64 (1.2.7-3+b1) ... Selecting previously unselected package libspoa7.0.0:amd64. Preparing to unpack .../libspoa7.0.0_4.0.7+ds-3_amd64.deb ... Unpacking libspoa7.0.0:amd64 (4.0.7+ds-3) ... Selecting previously unselected package racon. Preparing to unpack .../racon_1.5.0-2_amd64.deb ... Unpacking racon (1.5.0-2) ... Setting up libspoa7.0.0:amd64 (4.0.7+ds-3) ... Setting up libedlib1:amd64 (1.2.7-3+b1) ... Setting up racon (1.5.0-2) ... Processing triggers for libc-bin (2.35-1) ... 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', '-y', 'install', 'racon'] 0m12.4s INFO: Running scripts post_install 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_install_exceptions'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_install_exceptions'] 0m12.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m12.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m12.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp0i8hrd51 to sid 0m12.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m12.7s INFO: Running scripts pre_distupgrade 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', 'update'] 0m16.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [158 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9350 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6911 kB] Fetched 16.4 MB in 3s (5442 kB/s) Reading package lists... 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', 'update'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', '-yf', 'dist-upgrade'] 0m21.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt bash coreutils grep libapt-pkg6.0 libffi8 racon tzdata usr-is-merged usrmerge 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 10.9 MB of archives. After this operation, 764 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2-1 [1524 kB] Get:2 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.1-1 [2897 kB] Get:3 http://deb.debian.org/debian sid/main amd64 grep amd64 3.8-2 [432 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.5.3 [1044 kB] Get:5 http://deb.debian.org/debian sid/main amd64 apt amd64 2.5.3 [1505 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.3-2 [26.1 kB] Get:7 http://deb.debian.org/debian sid/main amd64 usr-is-merged all 32 [5524 B] Get:8 http://deb.debian.org/debian sid/main amd64 usrmerge all 32 [13.2 kB] Get:9 http://deb.debian.org/debian sid/main amd64 tzdata all 2022d-1 [290 kB] Get:10 http://deb.debian.org/debian sid/main amd64 racon amd64 1.5.0-3 [3115 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.9 MB in 1s (9844 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8635 files and directories currently installed.) Preparing to unpack .../archives/bash_5.2-1_amd64.deb ... Unpacking bash (5.2-1) over (5.2~rc2-2) ... Setting up bash (5.2-1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8635 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1_amd64.deb ... Unpacking coreutils (9.1-1) over (8.32-4.1+b1) ... Setting up coreutils (9.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8634 files and directories currently installed.) Preparing to unpack .../archives/grep_3.8-2_amd64.deb ... Unpacking grep (3.8-2) over (3.7-1) ... Setting up grep (3.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8636 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.5.3_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.5.3) over (2.5.2) ... Setting up libapt-pkg6.0:amd64 (2.5.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8636 files and directories currently installed.) Preparing to unpack .../archives/apt_2.5.3_amd64.deb ... Unpacking apt (2.5.3) over (2.5.2) ... Setting up apt (2.5.3) ... adduser: The user `_apt' already exists, but is not a system user. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8636 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.3-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.3-2) over (3.4.2-4) ... Setting up libffi8:amd64 (3.4.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8636 files and directories currently installed.) Preparing to unpack .../usr-is-merged_32_all.deb ... W: /etc/unsupported-skip-usrmerge-conversion exists. Unpacking usr-is-merged (32) over (31) ... Setting up usr-is-merged (32) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8636 files and directories currently installed.) Preparing to unpack .../archives/usrmerge_32_all.deb ... Unpacking usrmerge (32) over (31) ... Setting up usrmerge (32) ... W: /etc/unsupported-skip-usrmerge-conversion exists. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8636 files and directories currently installed.) Preparing to unpack .../tzdata_2022d-1_all.deb ... Unpacking tzdata (2022d-1) over (2022c-1) ... Preparing to unpack .../racon_1.5.0-3_amd64.deb ... Unpacking racon (1.5.0-3) over (1.5.0-2) ... Setting up tzdata (2022d-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Sep 30 21:59:26 UTC 2022. Universal Time is now: Fri Sep 30 21:59:26 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up racon (1.5.0-3) ... Processing triggers for libc-bin (2.35-1) ... Processing triggers for debianutils (5.7-0.3) ... 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', '-yf', 'dist-upgrade'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m23.0s DUMP: 2f585fa16d60b26c8982425f34d933f8 - 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'show', '--no-all-versions', 'racon'] 0m23.3s DUMP: Package: racon Version: 1.5.0-3 Installed-Size: 3167 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libedlib1 (>= 1.2.7-3~), libgcc-s1 (>= 3.0), libspoa7.0.0 (>= 4.0.5), libstdc++6 (>= 12), zlib1g (>= 1:1.1.4) Recommends: python3, rampler Description-en: consensus module for raw de novo DNA assembly of long uncorrected reads Racon is intended as a standalone consensus module to correct raw contigs generated by rapid assembly methods which do not include a consensus step. The goal of Racon is to generate genomic consensus which is of similar or better quality compared to the output generated by assembly methods which employ both error correction and consensus steps, while providing a speedup of several times compared to those methods. It supports data produced by both Pacific Biosciences and Oxford Nanopore Technologies. . Racon can be used as a polishing tool after the assembly with either Illumina data or data produced by third generation of sequencing. The type of data inputed is automatically detected. . Racon takes as input only three files: contigs in FASTA/FASTQ format, reads in FASTA/FASTQ format and overlaps/alignments between the reads and the contigs in MHAP/PAF/SAM format. Output is a set of polished contigs in FASTA format printed to stdout. All input files can be compressed with gzip. . Racon can also be used as a read error-correction tool. In this scenario, the MHAP/PAF/SAM file needs to contain pairwise overlaps between reads including dual overlaps. . A wrapper script is also available to enable easier usage to the end- user for large datasets. It has the same interface as racon but adds two additional features from the outside. Sequences can be subsampled to decrease the total execution time (accuracy might be lower) while target sequences can be split into smaller chunks and run sequentially to decrease memory consumption. Both features can be run at the same time as well. Description-md5: 0245f53dd68b53cce76f4a5dd8d8a554 Homepage: https://github.com/lbcb-sci/racon Section: science Priority: optional Filename: pool/main/r/racon/racon_1.5.0-3_amd64.deb Size: 3115248 MD5sum: 602de8da7f51b1ac954f76963f5399a6 SHA256: eba84b0023a9c8748a5fae490d259993f306b0d2e1b9c2efb89535d5458a9241 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'show', '--no-all-versions', 'racon'] 0m23.3s INFO: apt-cache knows about the following packages: racon 0m23.3s INFO: Running scripts pre_install 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_database-server'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_database-server'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_exceptions'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_exceptions'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_extras'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_extras'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'policy'] 0m23.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'policy'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'policy', 'racon'] 0m23.5s DUMP: racon: Installed: 1.5.0-3 Candidate: 1.5.0-3 Version table: *** 1.5.0-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'policy', 'racon'] 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', '-y', 'install', 'racon'] 0m24.1s DUMP: Reading package lists... Building dependency tree... Reading state information... racon is already the newest version (1.5.0-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', '-y', 'install', 'racon'] 0m24.1s INFO: Running scripts post_install 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_install_exceptions'] 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_install_exceptions'] 0m24.1s INFO: Running scripts post_distupgrade 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_distupgrade_exceptions'] 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_distupgrade_exceptions'] 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_distupgrade_zz_backports'] 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_distupgrade_zz_backports'] 0m24.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m24.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m24.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m24.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m24.7s INFO: Running scripts pre_install 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_database-server'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_database-server'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_exceptions'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_exceptions'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_extras'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_extras'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'policy'] 0m24.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'policy'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'policy', 'racon'] 0m24.8s DUMP: racon: Installed: 1.5.0-3 Candidate: 1.5.0-3 Version table: *** 1.5.0-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-cache', 'policy', 'racon'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', '-y', 'install', 'racon=1.5.0-3'] 0m25.3s DUMP: Reading package lists... Building dependency tree... Reading state information... racon is already the newest version (1.5.0-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', '-y', 'install', 'racon=1.5.0-3'] 0m25.3s INFO: Running scripts post_install 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_install_exceptions'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_install_exceptions'] 0m25.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m25.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m26.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', '-ac', '--ignore-obsolete'] 0m27.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', '-ac', '--ignore-obsolete'] 0m27.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.2s DUMP: 0.15.6 0m27.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.2s INFO: Running adequate version 0.15.6 now. 0m27.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'racon'] 0m27.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'racon'] 0m27.3s INFO: Running scripts pre_remove 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_remove_exceptions'] 0m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/pre_remove_exceptions'] 0m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.2s DUMP: install ok installed adduser adduser 3.129 install ok installed apt apt 2.5.3 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-1 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-3 install ok installed gpgv gpgv 2.2.39-1 install ok installed grep grep 3.8-2 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.3 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.35-1 install ok installed libc6:amd64 libc6 2.35-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.264 install ok installed libedlib1:amd64 libedlib1 1.2.7-3+b1 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1 install ok installed libffi8:amd64 libffi8 3.4.3-2 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-2 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-2 install ok installed libgdbm6:amd64 libgdbm6 1.23-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-2 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-2 install ok installed libpam-runtime libpam-runtime 1.5.2-2 install ok installed libpam0g:amd64 libpam0g 1.5.2-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libperl5.34:amd64 libperl5.34 5.34.0-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b2 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b2 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libspoa7.0.0:amd64 libspoa7.0.0 4.0.7+ds-3 install ok installed libss2:amd64 libss2 1.46.6~rc1-1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 251.4-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-2 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.4-3 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.6~rc1-1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl perl 5.34.0-5 install ok installed perl-base perl-base 5.34.0-5 install ok installed perl-modules-5.34 perl-modules-5.34 5.34.0-5 install ok installed racon racon 1.5.0-3 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.05-6 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022d-1 install ok installed usr-is-merged usr-is-merged 32 install ok installed usrmerge usrmerge 32 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', 'remove', 'libedlib1:amd64', 'libspoa7.0.0:amd64', 'racon'] 0m29.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libedlib1 libspoa7.0.0 racon 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. After this operation, 3585 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8636 files and directories currently installed.) Removing racon (1.5.0-3) ... Removing libedlib1:amd64 (1.2.7-3+b1) ... Removing libspoa7.0.0:amd64 (4.0.7+ds-3) ... Processing triggers for libc-bin (2.35-1) ... 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', 'remove', 'libedlib1:amd64', 'libspoa7.0.0:amd64', 'racon'] 0m29.2s INFO: Running scripts post_remove 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_remove_exceptions'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_remove_exceptions'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg', '--purge', 'libedlib1:amd64', 'libspoa7.0.0:amd64'] 0m29.2s DUMP: dpkg: warning: ignoring request to remove libedlib1 which isn't installed dpkg: warning: ignoring request to remove libspoa7.0.0 which isn't installed 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg', '--purge', 'libedlib1:amd64', 'libspoa7.0.0:amd64'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg', '--purge', 'racon'] 0m29.2s DUMP: dpkg: warning: ignoring request to remove racon which isn't installed 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg', '--purge', 'racon'] 0m29.2s INFO: Running scripts post_purge 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_purge_exceptions'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_purge_exceptions'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg', '--purge', '--pending'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg', '--purge', '--pending'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg', '--remove', '--pending'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg', '--remove', '--pending'] 0m29.3s INFO: Running scripts post_test 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_test_exceptions'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'tmp/scripts/post_test_exceptions'] 0m29.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m29.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg-divert', '--list'] 0m29.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'dpkg-divert', '--list'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', 'clean'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51', 'apt-get', 'clean'] 0m29.7s DEBUG: Recording chroot state 0m30.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/shm'] 0m30.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/shm'] 0m30.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/console'] 0m30.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/console'] 0m30.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/ptmx'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/ptmx'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/pts'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/dev/pts'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/proc'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51/proc'] 0m30.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m31.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp0i8hrd51'] 0m31.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp0i8hrd51 0m31.0s INFO: PASS: Upgrading between Debian distributions. 0m31.0s INFO: PASS: All tests. 0m31.0s INFO: piuparts run ends. ret=0 End: 2022-09-30 21:59:35 GMT