Start: 2020-04-27 12:04:33 GMT [testing] Package: refmac-dictionary Version: 5.41-1 Installed-Size: 183694 Maintainer: Andrius Merkys Architecture: all Description: dictionary for macromolecular refinement and model building Homepage: https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/refmac/Dictionary/dictionary.html Description-md5: 1ece2d349c4c3bced825d20f2171596e Section: science Priority: optional Filename: pool/main/r/refmac-dictionary/refmac-dictionary_5.41-1_all.deb Size: 14096160 MD5sum: 9f81a1c96dadde6659c96ed5f609dde1 SHA256: 2e82beab4b4a087a4d9ea43b63c152557bd9c189c0d6d716d6d20467ad859c1c [sid] Package: refmac-dictionary Version: 5.41-2 Installed-Size: 183694 Maintainer: Debian Science Maintainers Architecture: all Description: dictionary for macromolecular refinement and model building Multi-Arch: foreign Homepage: https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/refmac/Dictionary/dictionary.html Description-md5: 1ece2d349c4c3bced825d20f2171596e Section: science Priority: optional Filename: pool/main/r/refmac-dictionary/refmac-dictionary_5.41-2_all.deb Size: 14101572 MD5sum: b02d5c899500716be22bb859cd73d31f SHA256: 3a429ba0f43c436e8ece3f51ddedb1bc7de354ddba1e88c64255dea0bf407b08 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt refmac-dictionary=5.41-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.2~202004220813~1.1.1-17-ga29095e7 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt refmac-dictionary=5.41-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-8-amd64 #1 SMP Debian 4.19.98-1 (2020-01-26) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpiyxg901n 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpiyxg901n 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/proc'] 0m2.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/proc'] 0m2.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/pts'] 0m2.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/pts'] 0m2.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/ptmx'] 0m2.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/ptmx'] 0m2.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/console'] 0m2.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/console'] 0m2.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/shm'] 0m2.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/shm'] 0m2.9s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ bullseye main 0m3.0s DEBUG: Created policy-rc.d and chmodded it. 0m3.0s DEBUG: Created resolv.conf. 0m3.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpiyxg901n/tmp/scripts/ 0m3.2s INFO: Running scripts post_chroot_unpack 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', 'update'] 0m6.5s DUMP: Get:1 http://mirror-ubc.debian.org/debian bullseye InRelease [116 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages [7686 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main Translation-en [5875 kB] Fetched 13.7 MB in 3s (5269 kB/s) Reading package lists... 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', 'update'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', '-yf', 'dist-upgrade'] 0m7.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: debconf gcc-10-base libgcc-s1 libstdc++6 libsystemd0 libudev1 perl-base 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2975 kB of archives. After this operation, 2048 B disk space will be freed. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 perl-base amd64 5.30.0-10 [1574 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 debconf all 1.5.74 [145 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main amd64 libsystemd0 amd64 245.5-1 [360 kB] Get:4 http://mirror-ubc.debian.org/debian bullseye/main amd64 gcc-10-base amd64 10-20200418-1 [196 kB] Get:5 http://mirror-ubc.debian.org/debian bullseye/main amd64 libstdc++6 amd64 10-20200418-1 [492 kB] Get:6 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgcc-s1 amd64 10-20200418-1 [41.3 kB] Get:7 http://mirror-ubc.debian.org/debian bullseye/main amd64 libudev1 amd64 245.5-1 [167 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2975 kB in 0s (74.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../perl-base_5.30.0-10_amd64.deb ... Unpacking perl-base (5.30.0-10) over (5.30.0-9) ... Setting up perl-base (5.30.0-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../debconf_1.5.74_all.deb ... Unpacking debconf (1.5.74) over (1.5.73) ... Setting up debconf (1.5.74) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../libsystemd0_245.5-1_amd64.deb ... Unpacking libsystemd0:amd64 (245.5-1) over (245.4-3) ... Setting up libsystemd0:amd64 (245.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10-20200418-1_amd64.deb ... Unpacking gcc-10-base:amd64 (10-20200418-1) over (10-20200411-1) ... Setting up gcc-10-base:amd64 (10-20200418-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../libstdc++6_10-20200418-1_amd64.deb ... Unpacking libstdc++6:amd64 (10-20200418-1) over (10-20200411-1) ... Setting up libstdc++6:amd64 (10-20200418-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200418-1_amd64.deb ... Unpacking libgcc-s1:amd64 (10-20200418-1) over (10-20200411-1) ... Setting up libgcc-s1:amd64 (10-20200418-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../libudev1_245.5-1_amd64.deb ... Unpacking libudev1:amd64 (245.5-1) over (245.4-3) ... Setting up libudev1:amd64 (245.5-1) ... Processing triggers for libc-bin (2.30-4) ... 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', '-yf', 'dist-upgrade'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.1s DUMP: c0a8b1aa40b00f73ff435b4f3198c4fd - 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.1s INFO: Running scripts post_setup 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_setup_dummy_users'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_setup_dummy_users'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_setup_forbid_home'] 0m9.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_setup_forbid_home'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_setup_minimize'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_setup_minimize'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_setup_zz_backports'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_setup_zz_backports'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.2s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.0.2 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-6 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-7 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10-20200418-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-10 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-6 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.0.2 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3+b1 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.30-4 install ok installed libc6:amd64 libc6 2.30-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.16-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.251 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libgcc-s1:amd64 libgcc-s1 10-20200418-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.13-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.37-1 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.2-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.20-1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.3-1+b1 install ok installed libselinux1:amd64 libselinux1 3.0-1+b3 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1+b3 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libstdc++6:amd64 libstdc++6 10-20200418-1 install ok installed libsystemd0:amd64 libsystemd0 245.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2-1 install ok installed libudev1:amd64 libudev1 245.5-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-3 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.2-1 install ok installed ncurses-bin ncurses-bin 6.2-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.0-10 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-3 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m9.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m9.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m9.8s INFO: Running scripts is_testable 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/is_testable_uninstallable'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/is_testable_uninstallable'] 0m9.9s INFO: Running scripts pre_test 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_test_exceptions'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_test_exceptions'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_test_root_password'] 0m9.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_test_root_password'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'show', '--no-all-versions', 'refmac-dictionary'] 0m10.1s DUMP: Package: refmac-dictionary Version: 5.41-1 Installed-Size: 183694 Maintainer: Andrius Merkys Architecture: all Description-en: dictionary for macromolecular refinement and model building Dictionary of ligands and constituent blocks (e.g. amino acids, nucleic acids, sugars) contains necessary stereochemical information (e.g. bond lengths, angles, torsion angles) about small molecules used in refinement and model building. Values in the dictionary are for an abstract form of monomers, i.e there is no conformational/configurational or environment dependence. Description-md5: 1ece2d349c4c3bced825d20f2171596e Homepage: https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/refmac/Dictionary/dictionary.html Section: science Priority: optional Filename: pool/main/r/refmac-dictionary/refmac-dictionary_5.41-1_all.deb Size: 14096160 MD5sum: 9f81a1c96dadde6659c96ed5f609dde1 SHA256: 2e82beab4b4a087a4d9ea43b63c152557bd9c189c0d6d716d6d20467ad859c1c 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'show', '--no-all-versions', 'refmac-dictionary'] 0m10.1s INFO: apt-cache knows about the following packages: refmac-dictionary 0m10.1s INFO: Running scripts pre_install 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_database-server'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_database-server'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_exceptions'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_exceptions'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_extras'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_extras'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'policy'] 0m10.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'policy'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'policy', 'refmac-dictionary'] 0m10.2s DUMP: refmac-dictionary: Installed: (none) Candidate: 5.41-1 Version table: 5.41-1 500 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'policy', 'refmac-dictionary'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', '-y', 'install', 'refmac-dictionary'] 0m14.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: refmac-dictionary 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 14.1 MB of archives. After this operation, 188 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 refmac-dictionary all 5.41-1 [14.1 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.1 MB in 1s (9531 kB/s) Selecting previously unselected package refmac-dictionary. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6539 files and directories currently installed.) Preparing to unpack .../refmac-dictionary_5.41-1_all.deb ... Unpacking refmac-dictionary (5.41-1) ... Setting up refmac-dictionary (5.41-1) ... 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', '-y', 'install', 'refmac-dictionary'] 0m14.5s INFO: Running scripts post_install 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_install_exceptions'] 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_install_exceptions'] 0m14.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m15.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m15.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpiyxg901n to sid 0m15.4s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m15.4s INFO: Running scripts pre_distupgrade 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_distupgrade_exceptions'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_distupgrade_exceptions'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', 'update'] 0m18.7s DUMP: Get:1 http://mirror-ubc.debian.org/debian sid InRelease [146 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 Packages [8244 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main Translation-en [6196 kB] Fetched 14.6 MB in 2s (5971 kB/s) Reading package lists... 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', 'update'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', '-yf', 'dist-upgrade'] 0m23.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: gcc-9-base libacl1 refmac-dictionary tzdata 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 14.6 MB of archives. After this operation, 3072 B disk space will be freed. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 libacl1 amd64 2.2.53-7 [31.1 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 gcc-9-base amd64 9.3.0-11 [196 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 tzdata all 2020a-1 [281 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 refmac-dictionary all 5.41-2 [14.1 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.6 MB in 1s (10.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18058 files and directories currently installed.) Preparing to unpack .../libacl1_2.2.53-7_amd64.deb ... Unpacking libacl1:amd64 (2.2.53-7) over (2.2.53-6) ... Setting up libacl1:amd64 (2.2.53-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18058 files and directories currently installed.) Preparing to unpack .../gcc-9-base_9.3.0-11_amd64.deb ... Unpacking gcc-9-base:amd64 (9.3.0-11) over (9.3.0-10) ... Preparing to unpack .../tzdata_2020a-1_all.deb ... Unpacking tzdata (2020a-1) over (2019c-3) ... Preparing to unpack .../refmac-dictionary_5.41-2_all.deb ... Unpacking refmac-dictionary (5.41-2) over (5.41-1) ... Setting up tzdata (2020a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Apr 27 12:04:58 UTC 2020. Universal Time is now: Mon Apr 27 12:04:58 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up refmac-dictionary (5.41-2) ... Setting up gcc-9-base:amd64 (9.3.0-11) ... Processing triggers for libc-bin (2.30-4) ... 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', '-yf', 'dist-upgrade'] 0m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m24.0s DUMP: c021e6b184cb993ba0c09d7116c60386 - 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'show', '--no-all-versions', 'refmac-dictionary'] 0m24.3s DUMP: Package: refmac-dictionary Version: 5.41-2 Installed-Size: 183694 Maintainer: Debian Science Maintainers Architecture: all Description-en: dictionary for macromolecular refinement and model building Dictionary of ligands and constituent blocks (e.g. amino acids, nucleic acids, sugars) contains necessary stereochemical information (e.g. bond lengths, angles, torsion angles) about small molecules used in refinement and model building. Values in the dictionary are for an abstract form of monomers, i.e there is no conformational/configurational or environment dependence. Description-md5: 1ece2d349c4c3bced825d20f2171596e Multi-Arch: foreign Homepage: https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/refmac/Dictionary/dictionary.html Section: science Priority: optional Filename: pool/main/r/refmac-dictionary/refmac-dictionary_5.41-2_all.deb Size: 14101572 MD5sum: b02d5c899500716be22bb859cd73d31f SHA256: 3a429ba0f43c436e8ece3f51ddedb1bc7de354ddba1e88c64255dea0bf407b08 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'show', '--no-all-versions', 'refmac-dictionary'] 0m24.3s INFO: apt-cache knows about the following packages: refmac-dictionary 0m24.3s INFO: Running scripts pre_install 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_database-server'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_database-server'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_exceptions'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_exceptions'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_extras'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_extras'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'policy'] 0m24.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'policy'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'policy', 'refmac-dictionary'] 0m24.4s DUMP: refmac-dictionary: Installed: 5.41-2 Candidate: 5.41-2 Version table: *** 5.41-2 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'policy', 'refmac-dictionary'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', '-y', 'install', 'refmac-dictionary'] 0m24.8s DUMP: Reading package lists... Building dependency tree... Reading state information... refmac-dictionary is already the newest version (5.41-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', '-y', 'install', 'refmac-dictionary'] 0m24.8s INFO: Running scripts post_install 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_install_exceptions'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_install_exceptions'] 0m24.8s INFO: Running scripts post_distupgrade 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_distupgrade_exceptions'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_distupgrade_exceptions'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_distupgrade_zz_backports'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_distupgrade_zz_backports'] 0m24.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m25.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m25.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m26.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m26.2s INFO: Running scripts pre_install 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_database-server'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_database-server'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_exceptions'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_exceptions'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_extras'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_extras'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'policy'] 0m26.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'policy'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'policy', 'refmac-dictionary'] 0m26.4s DUMP: refmac-dictionary: Installed: 5.41-2 Candidate: 5.41-2 Version table: *** 5.41-2 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-cache', 'policy', 'refmac-dictionary'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', '-y', 'install', 'refmac-dictionary=5.41-2'] 0m26.8s DUMP: Reading package lists... Building dependency tree... Reading state information... refmac-dictionary is already the newest version (5.41-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', '-y', 'install', 'refmac-dictionary=5.41-2'] 0m26.8s INFO: Running scripts post_install 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_install_exceptions'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_install_exceptions'] 0m26.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m27.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m28.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', '-ac', '--ignore-obsolete'] 0m30.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', '-ac', '--ignore-obsolete'] 0m30.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m30.3s DUMP: 0.15.2 0m30.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m30.3s INFO: Running adequate version 0.15.2 now. 0m30.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'refmac-dictionary'] 0m30.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'refmac-dictionary'] 0m30.6s INFO: Running scripts pre_remove 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_remove_exceptions'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/pre_remove_exceptions'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m32.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.0.2 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-6 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-7 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10-20200418-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-11 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-7 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.0.2 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3+b1 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.30-4 install ok installed libc6:amd64 libc6 2.30-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.16-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.251 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libgcc-s1:amd64 libgcc-s1 10-20200418-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.13-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.37-1 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.2-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.20-1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.3-1+b1 install ok installed libselinux1:amd64 libselinux1 3.0-1+b3 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1+b3 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libstdc++6:amd64 libstdc++6 10-20200418-1 install ok installed libsystemd0:amd64 libsystemd0 245.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2-1 install ok installed libudev1:amd64 libudev1 245.5-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-3 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.2-1 install ok installed ncurses-bin ncurses-bin 6.2-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.0-10 install ok installed refmac-dictionary refmac-dictionary 5.41-2 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-3 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2020a-1 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', 'remove', 'refmac-dictionary'] 0m33.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: refmac-dictionary 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 188 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18058 files and directories currently installed.) Removing refmac-dictionary (5.41-2) ... 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', 'remove', 'refmac-dictionary'] 0m33.3s INFO: Running scripts post_remove 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_remove_exceptions'] 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_remove_exceptions'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'dpkg', '--purge', 'refmac-dictionary'] 0m33.4s DUMP: dpkg: warning: ignoring request to remove refmac-dictionary which isn't installed 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'dpkg', '--purge', 'refmac-dictionary'] 0m33.4s INFO: Running scripts post_purge 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_purge_exceptions'] 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_purge_exceptions'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'dpkg', '--purge', '--pending'] 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'dpkg', '--purge', '--pending'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'dpkg', '--remove', '--pending'] 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'dpkg', '--remove', '--pending'] 0m33.4s INFO: Running scripts post_test 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_test_exceptions'] 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'tmp/scripts/post_test_exceptions'] 0m33.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m33.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'dpkg-divert', '--list'] 0m33.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'dpkg-divert', '--list'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', 'clean'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpiyxg901n', 'apt-get', 'clean'] 0m33.9s DEBUG: Recording chroot state 0m34.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/shm'] 0m34.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/shm'] 0m34.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/console'] 0m34.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/console'] 0m34.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/ptmx'] 0m34.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/ptmx'] 0m34.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/pts'] 0m34.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/dev/pts'] 0m34.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/proc'] 0m34.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpiyxg901n/proc'] 0m34.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m34.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpiyxg901n'] 0m34.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpiyxg901n 0m34.8s INFO: PASS: Upgrading between Debian distributions. 0m34.8s INFO: PASS: All tests. 0m34.8s INFO: piuparts run ends. ret=0 End: 2020-04-27 12:05:10 GMT