Start: 2022-05-30 00:32:59 GMT [testing] Package: resfinder-db Version: 0.0+git20200408.0322c0d-1 Installed-Size: 128205 Maintainer: Debian Med Packaging Team Architecture: all Recommends: resfinder Description: ResFinder database is a curated database of acquired resistance genes Homepage: https://bitbucket.org/genomicepidemiology/resfinder Description-md5: a4cfc4a3c540446a5b15cae84ba390d4 Section: science Priority: optional Filename: pool/main/r/resfinder-db/resfinder-db_0.0+git20200408.0322c0d-1_all.deb Size: 12929716 MD5sum: d40ba00819476c1a520b49aa56abfd93 SHA256: 7fd76f3fe379ab3339f7c38091d2fe860f3e73d8f70775fed3d116f301c844ec [sid] Package: resfinder-db Version: 0.0+git20220524.fa32d9a-1 Installed-Size: 92738 Maintainer: Debian Med Packaging Team Architecture: all Recommends: resfinder Description: ResFinder database is a curated database of acquired resistance genes Homepage: https://bitbucket.org/genomicepidemiology/resfinder Description-md5: a4cfc4a3c540446a5b15cae84ba390d4 Section: science Priority: optional Filename: pool/main/r/resfinder-db/resfinder-db_0.0+git20220524.fa32d9a-1_all.deb Size: 9079020 MD5sum: bf9e868efb76ee96c5a9ad3c3e6d8c5f SHA256: bf8ea70f068525477410e9e989cf61c2326ecf42ec130dc5958fb8163f430e6d Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt resfinder-db=0.0+git20220524.fa32d9a-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt resfinder-db=0.0+git20220524.fa32d9a-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-20-amd64 #1 SMP Debian 4.19.235-1 (2022-03-17) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpuxu6v4j8 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpuxu6v4j8 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/console'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/console'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/shm'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/shm'] 0m2.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.2s DEBUG: Created policy-rc.d and chmodded it. 0m2.2s DEBUG: Created resolv.conf. 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpuxu6v4j8/tmp/scripts/ 0m2.2s INFO: Running scripts post_chroot_unpack 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', 'update'] 0m4.7s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [130 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8465 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5775 kB] Fetched 14.4 MB in 2s (7542 kB/s) Reading package lists... 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', 'update'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', '-yf', 'dist-upgrade'] 0m5.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: dpkg init-system-helpers lsb-base 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2634 kB of archives. After this operation, 9216 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 dpkg amd64 1.21.8 [2556 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 init-system-helpers all 1.63 [48.9 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 lsb-base all 11.2 [29.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2634 kB in 0s (43.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.21.8_amd64.deb ... Unpacking dpkg (1.21.8) over (1.21.7) ... Setting up dpkg (1.21.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.63_all.deb ... Unpacking init-system-helpers (1.63) over (1.62) ... Setting up init-system-helpers (1.63) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.2_all.deb ... Unpacking lsb-base (11.2) over (11.1.0) ... Setting up lsb-base (11.2) ... 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', '-yf', 'dist-upgrade'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.9s DUMP: 21310f9085292356924374337e944f80 - 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.9s INFO: Running scripts post_setup 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_setup_dummy_users'] 0m6.5s DUMP: useradd warning: dummy1000's uid 1000 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1001's uid 1001 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1002's uid 1002 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1003's uid 1003 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1004's uid 1004 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1005's uid 1005 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1006's uid 1006 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1007's uid 1007 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1008's uid 1008 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1009's uid 1009 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1010's uid 1010 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_setup_dummy_users'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_setup_forbid_home'] 0m6.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_setup_forbid_home'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_setup_minimize'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_setup_minimize'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_setup_zz_backports'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_setup_zz_backports'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.6s DUMP: install ok installed adduser adduser 3.121 install ok installed apt apt 2.5.0 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6+b1 install ok installed bsdutils bsdutils 1:2.38-4 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.8 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.1.0-2 install ok installed gpgv gpgv 2.2.35-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.63 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.0 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblkid1:amd64 libblkid1 2.38-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-7 install ok installed libc6:amd64 libc6 2.33-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1.1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.262 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12.1.0-2 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.4-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38-4 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-13 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-13 install ok installed libpam-runtime libpam-runtime 1.4.0-13 install ok installed libpam0g:amd64 libpam0g 1.4.0-13 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1 install ok installed libselinux1:amd64 libselinux1 3.3-1+b2 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b2 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38-4 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libstdc++6:amd64 libstdc++6 12.1.0-2 install ok installed libsystemd0:amd64 libsystemd0 250.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 250.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.2 install ok installed mawk mawk 1.3.4.20200120-3+b1 install ok installed mount mount 2.38-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-4 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.03-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022a-1 install ok installed util-linux util-linux 2.38-4 install ok installed util-linux-extra util-linux-extra 2.38-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m6.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m6.9s INFO: Running scripts is_testable 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/is_testable_uninstallable'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/is_testable_uninstallable'] 0m6.9s INFO: Running scripts pre_test 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_test_exceptions'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_test_exceptions'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_test_root_password'] 0m6.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_test_root_password'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'show', '--no-all-versions', 'resfinder-db'] 0m7.1s DUMP: Package: resfinder-db Version: 0.0+git20200408.0322c0d-1 Installed-Size: 128205 Maintainer: Debian Med Packaging Team Architecture: all Recommends: resfinder Description-en: ResFinder database is a curated database of acquired resistance genes ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria. . ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates. . This package provides the database needed for resfinder. Description-md5: a4cfc4a3c540446a5b15cae84ba390d4 Homepage: https://bitbucket.org/genomicepidemiology/resfinder Section: science Priority: optional Filename: pool/main/r/resfinder-db/resfinder-db_0.0+git20200408.0322c0d-1_all.deb Size: 12929716 MD5sum: d40ba00819476c1a520b49aa56abfd93 SHA256: 7fd76f3fe379ab3339f7c38091d2fe860f3e73d8f70775fed3d116f301c844ec 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'show', '--no-all-versions', 'resfinder-db'] 0m7.1s INFO: apt-cache knows about the following packages: resfinder-db 0m7.1s INFO: Running scripts pre_install 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_database-server'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_database-server'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_exceptions'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_exceptions'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_extras'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_extras'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'policy'] 0m7.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'policy'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'policy', 'resfinder-db'] 0m7.2s DUMP: resfinder-db: Installed: (none) Candidate: 0.0+git20200408.0322c0d-1 Version table: 0.0+git20200408.0322c0d-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'policy', 'resfinder-db'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', '-y', 'install', 'resfinder-db'] 0m9.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Recommended packages: resfinder The following NEW packages will be installed: resfinder-db 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 12.9 MB of archives. After this operation, 131 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 resfinder-db all 0.0+git20200408.0322c0d-1 [12.9 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.9 MB in 0s (88.9 MB/s) Selecting previously unselected package resfinder-db. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6620 files and directories currently installed.) Preparing to unpack .../resfinder-db_0.0+git20200408.0322c0d-1_all.deb ... Unpacking resfinder-db (0.0+git20200408.0322c0d-1) ... Setting up resfinder-db (0.0+git20200408.0322c0d-1) ... 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', '-y', 'install', 'resfinder-db'] 0m9.4s INFO: Running scripts post_install 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_install_exceptions'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_install_exceptions'] 0m9.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m9.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m9.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpuxu6v4j8 to sid 0m9.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m9.7s INFO: Running scripts pre_distupgrade 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', 'update'] 0m13.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9203 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6817 kB] Fetched 16.2 MB in 3s (5974 kB/s) Reading package lists... 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', 'update'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', '-yf', 'dist-upgrade'] 0m15.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash libsystemd0 libudev1 resfinder-db 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 11.1 MB of archives. After this operation, 36.3 MB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.1-6.1 [1411 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 251.1-1 [408 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 251.1-1 [182 kB] Get:4 http://deb.debian.org/debian sid/main amd64 resfinder-db all 0.0+git20220524.fa32d9a-1 [9079 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.1 MB in 0s (103 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6725 files and directories currently installed.) Preparing to unpack .../bash_5.1-6.1_amd64.deb ... Unpacking bash (5.1-6.1) over (5.1-6+b1) ... Setting up bash (5.1-6.1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6725 files and directories currently installed.) Preparing to unpack .../libsystemd0_251.1-1_amd64.deb ... Unpacking libsystemd0:amd64 (251.1-1) over (250.4-1) ... Setting up libsystemd0:amd64 (251.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6725 files and directories currently installed.) Preparing to unpack .../libudev1_251.1-1_amd64.deb ... Unpacking libudev1:amd64 (251.1-1) over (250.4-1) ... Setting up libudev1:amd64 (251.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6725 files and directories currently installed.) Preparing to unpack .../resfinder-db_0.0+git20220524.fa32d9a-1_all.deb ... Unpacking resfinder-db (0.0+git20220524.fa32d9a-1) over (0.0+git20200408.0322c0d-1) ... Setting up resfinder-db (0.0+git20220524.fa32d9a-1) ... Processing triggers for debianutils (5.7-0.2) ... Processing triggers for libc-bin (2.33-7) ... 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', '-yf', 'dist-upgrade'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.7s DUMP: 7171df2310a5ddfee9c783cd4213fc76 - 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'show', '--no-all-versions', 'resfinder-db'] 0m15.9s DUMP: Package: resfinder-db Version: 0.0+git20220524.fa32d9a-1 Installed-Size: 92738 Maintainer: Debian Med Packaging Team Architecture: all Recommends: resfinder Description-en: ResFinder database is a curated database of acquired resistance genes ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria. . ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates. . This package provides the database needed for resfinder. Description-md5: a4cfc4a3c540446a5b15cae84ba390d4 Homepage: https://bitbucket.org/genomicepidemiology/resfinder Section: science Priority: optional Filename: pool/main/r/resfinder-db/resfinder-db_0.0+git20220524.fa32d9a-1_all.deb Size: 9079020 MD5sum: bf9e868efb76ee96c5a9ad3c3e6d8c5f SHA256: bf8ea70f068525477410e9e989cf61c2326ecf42ec130dc5958fb8163f430e6d 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'show', '--no-all-versions', 'resfinder-db'] 0m15.9s INFO: apt-cache knows about the following packages: resfinder-db 0m15.9s INFO: Running scripts pre_install 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_database-server'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_database-server'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_exceptions'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_exceptions'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_extras'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_extras'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'policy'] 0m16.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'policy'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'policy', 'resfinder-db'] 0m16.0s DUMP: resfinder-db: Installed: 0.0+git20220524.fa32d9a-1 Candidate: 0.0+git20220524.fa32d9a-1 Version table: *** 0.0+git20220524.fa32d9a-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'policy', 'resfinder-db'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', '-y', 'install', 'resfinder-db'] 0m16.4s DUMP: Reading package lists... Building dependency tree... Reading state information... resfinder-db is already the newest version (0.0+git20220524.fa32d9a-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', '-y', 'install', 'resfinder-db'] 0m16.4s INFO: Running scripts post_install 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_install_exceptions'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_install_exceptions'] 0m16.4s INFO: Running scripts post_distupgrade 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m16.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m16.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m16.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m16.9s INFO: Running scripts pre_install 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_database-server'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_database-server'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_exceptions'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_exceptions'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_extras'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_extras'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'policy'] 0m17.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'policy'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'policy', 'resfinder-db'] 0m17.0s DUMP: resfinder-db: Installed: 0.0+git20220524.fa32d9a-1 Candidate: 0.0+git20220524.fa32d9a-1 Version table: *** 0.0+git20220524.fa32d9a-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-cache', 'policy', 'resfinder-db'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', '-y', 'install', 'resfinder-db=0.0+git20220524.fa32d9a-1'] 0m17.4s DUMP: Reading package lists... Building dependency tree... Reading state information... resfinder-db is already the newest version (0.0+git20220524.fa32d9a-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', '-y', 'install', 'resfinder-db=0.0+git20220524.fa32d9a-1'] 0m17.4s INFO: Running scripts post_install 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_install_exceptions'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_install_exceptions'] 0m17.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m17.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m18.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', '-ac', '--ignore-obsolete'] 0m18.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', '-ac', '--ignore-obsolete'] 0m18.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.9s DUMP: 0.15.2 0m18.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.9s INFO: Running adequate version 0.15.2 now. 0m18.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'resfinder-db'] 0m18.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'resfinder-db'] 0m18.9s INFO: Running scripts pre_remove 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_remove_exceptions'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/pre_remove_exceptions'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.8s DUMP: install ok installed adduser adduser 3.121 install ok installed apt apt 2.5.0 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6.1 install ok installed bsdutils bsdutils 1:2.38-4 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.8 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.1.0-2 install ok installed gpgv gpgv 2.2.35-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.63 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.0 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblkid1:amd64 libblkid1 2.38-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-7 install ok installed libc6:amd64 libc6 2.33-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1.1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.262 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12.1.0-2 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.4-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38-4 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-13 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-13 install ok installed libpam-runtime libpam-runtime 1.4.0-13 install ok installed libpam0g:amd64 libpam0g 1.4.0-13 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1 install ok installed libselinux1:amd64 libselinux1 3.3-1+b2 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b2 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38-4 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libstdc++6:amd64 libstdc++6 12.1.0-2 install ok installed libsystemd0:amd64 libsystemd0 251.1-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.1-1 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.2 install ok installed mawk mawk 1.3.4.20200120-3+b1 install ok installed mount mount 2.38-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-4 install ok installed resfinder-db resfinder-db 0.0+git20220524.fa32d9a-1 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.03-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022a-1 install ok installed util-linux util-linux 2.38-4 install ok installed util-linux-extra util-linux-extra 2.38-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', 'remove', 'resfinder-db'] 0m20.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: resfinder-db 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 95.0 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6723 files and directories currently installed.) Removing resfinder-db (0.0+git20220524.fa32d9a-1) ... 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', 'remove', 'resfinder-db'] 0m20.6s INFO: Running scripts post_remove 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_remove_exceptions'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_remove_exceptions'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'dpkg', '--purge', 'resfinder-db'] 0m20.6s DUMP: dpkg: warning: ignoring request to remove resfinder-db which isn't installed 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'dpkg', '--purge', 'resfinder-db'] 0m20.6s INFO: Running scripts post_purge 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_purge_exceptions'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_purge_exceptions'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'dpkg', '--purge', '--pending'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'dpkg', '--purge', '--pending'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'dpkg', '--remove', '--pending'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'dpkg', '--remove', '--pending'] 0m20.6s INFO: Running scripts post_test 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_test_exceptions'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'tmp/scripts/post_test_exceptions'] 0m20.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m21.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'dpkg-divert', '--list'] 0m21.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'dpkg-divert', '--list'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', 'clean'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8', 'apt-get', 'clean'] 0m21.0s DEBUG: Recording chroot state 0m21.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/shm'] 0m21.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/shm'] 0m21.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/console'] 0m21.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/console'] 0m21.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/ptmx'] 0m21.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/ptmx'] 0m21.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/pts'] 0m21.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/dev/pts'] 0m21.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/proc'] 0m21.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8/proc'] 0m21.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m22.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpuxu6v4j8'] 0m22.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpuxu6v4j8 0m22.0s INFO: PASS: Upgrading between Debian distributions. 0m22.0s INFO: PASS: All tests. 0m22.0s INFO: piuparts run ends. ret=0 End: 2022-05-30 00:33:22 GMT