Start: 2024-11-05 04:25:47 GMT [testing] Package: resfinder Version: 4.4.2-1 Installed-Size: 402 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, resfinder-db, python3-cgecore, python3-tabulate, ncbi-blast+-legacy, kma, python3-git, python3-dateutil, python3-cgelib Description: identify acquired antimicrobial resistance genes Homepage: https://bitbucket.org/genomicepidemiology/resfinder Description-md5: cce3ff3cc36c4c2328391a5521af12c8 Section: science Priority: optional Filename: pool/main/r/resfinder/resfinder_4.4.2-1_all.deb Size: 67844 MD5sum: bb69b9223862a133d1fa1e79245f47a3 SHA256: fa292258bbb6c6d9619c467472445e8f92adf048f4aa2437a78ec0be33991c0d [sid] Package: resfinder Version: 4.4.2-2 Installed-Size: 402 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, resfinder-db, python3-cgecore, python3-tabulate, ncbi-blast+-legacy, kma, python3-git, python3-dateutil, python3-cgelib Description: identify acquired antimicrobial resistance genes Homepage: https://bitbucket.org/genomicepidemiology/resfinder Description-md5: cce3ff3cc36c4c2328391a5521af12c8 Section: science Priority: optional Filename: pool/main/r/resfinder/resfinder_4.4.2-2_all.deb Size: 67988 MD5sum: 5ac3887582571c40fe761fe95b3494d0 SHA256: 9bf9bb64dabca2f4aebf075744d44eab3210970fbf335ee1f221eb3fd54a838a Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt resfinder=4.4.2-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt resfinder=4.4.2-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp64mnf1xt 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp64mnf1xt 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp64mnf1xt/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', 'update'] 0m2.7s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [172 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9331 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6240 kB] Fetched 15.7 MB in 1s (10.9 MB/s) Reading package lists... 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', 'update'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', '-yf', 'dist-upgrade'] 0m4.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: coreutils libssl3t64 libsystemd0 libudev1 openssl-provider-legacy 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6019 kB of archives. After this operation, 296 kB disk space will be freed. Get:1 http://deb.debian.org/debian trixie/main amd64 coreutils amd64 9.5-1+b1 [2922 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 openssl-provider-legacy amd64 3.3.2-2 [298 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.3.2-2 [2271 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 256.7-3 [382 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 256.7-3 [145 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6019 kB in 0s (79.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5166 files and directories currently installed.) Preparing to unpack .../coreutils_9.5-1+b1_amd64.deb ... Unpacking coreutils (9.5-1+b1) over (9.4-3.1) ... Setting up coreutils (9.5-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5167 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.3.2-2_amd64.deb ... Unpacking openssl-provider-legacy (3.3.2-2) over (3.3.2-1) ... Setting up openssl-provider-legacy (3.3.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5167 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.3.2-2_amd64.deb ... Unpacking libssl3t64:amd64 (3.3.2-2) over (3.3.2-1) ... Setting up libssl3t64:amd64 (3.3.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5167 files and directories currently installed.) Preparing to unpack .../libsystemd0_256.7-3_amd64.deb ... Unpacking libsystemd0:amd64 (256.7-3) over (256.7-2) ... Setting up libsystemd0:amd64 (256.7-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5167 files and directories currently installed.) Preparing to unpack .../libudev1_256.7-3_amd64.deb ... Unpacking libudev1:amd64 (256.7-3) over (256.7-2) ... Setting up libudev1:amd64 (256.7-3) ... Processing triggers for libc-bin (2.40-3) ... 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', '-yf', 'dist-upgrade'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.1s DUMP: b5688fa1481459c48bb3ed321e8b749e - 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.1s INFO: Running scripts post_setup 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_setup_dummy_users'] 0m6.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_setup_dummy_users'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_setup_forbid_home'] 0m6.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_setup_forbid_home'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_setup_minimize'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_setup_minimize'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_setup_zz_backports'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_setup_zz_backports'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.4s DUMP: install ok installed apt apt 2.9.10 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1+b1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-6 install ok installed gpgv gpgv 2.2.44-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.10 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:3.1.2-4 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-4+b1 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-3 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272+b1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b2 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b2 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libss2:amd64 libss2 1.47.1-1+b1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 256.7-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 256.7-3 install ok installed libunistring5:amd64 libunistring5 1.2-1+b1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1+b1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.40.0-6 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 0m6.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 0m6.8s INFO: Running scripts is_testable 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/is_testable_uninstallable'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/is_testable_uninstallable'] 0m6.8s INFO: Running scripts pre_test 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_test_exceptions'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_test_exceptions'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_test_root_password'] 0m6.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_test_root_password'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'show', '--no-all-versions', 'resfinder'] 0m7.1s DUMP: Package: resfinder Version: 4.4.2-1 Installed-Size: 402 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, resfinder-db, python3-cgecore, python3-tabulate, ncbi-blast+-legacy, kma, python3-git, python3-dateutil, python3-cgelib Description-en: identify acquired antimicrobial resistance genes ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria. . ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates. Description-md5: cce3ff3cc36c4c2328391a5521af12c8 Homepage: https://bitbucket.org/genomicepidemiology/resfinder Section: science Priority: optional Filename: pool/main/r/resfinder/resfinder_4.4.2-1_all.deb Size: 67844 MD5sum: bb69b9223862a133d1fa1e79245f47a3 SHA256: fa292258bbb6c6d9619c467472445e8f92adf048f4aa2437a78ec0be33991c0d 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'show', '--no-all-versions', 'resfinder'] 0m7.1s INFO: apt-cache knows about the following packages: resfinder 0m7.1s INFO: Running scripts pre_install 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_database-server'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_database-server'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_exceptions'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_exceptions'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_extras'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_extras'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'policy'] 0m7.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'policy'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'policy', 'resfinder'] 0m7.2s DUMP: resfinder: Installed: (none) Candidate: 4.4.2-1 Version table: 4.4.2-1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'policy', 'resfinder'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', '-y', 'install', 'resfinder'] 1m12.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 git git-man kma libatomic1 libblas3 libbrotli1 libcairo2 libcurl3t64-gnutls libdeflate0 liberror-perl libexpat1 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.5-0 liblerc4 liblmdb0 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnsl2 libopenjp2-7 libperl5.40 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsqlite3-0 libssh2-1t64 libtiff6 libtirpc-common libtirpc3t64 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase perl perl-modules-5.40 python3 python3-autocommand python3-biopython python3-cairo python3-cgecore python3-cgelib python3-chardet python3-dateutil python3-freetype python3-git python3-gitdb python3-inflect python3-jaraco.context python3-jaraco.functools python3-minimal python3-more-itertools python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-reportlab python3-rlpycairo python3-smmap python3-tabulate python3-typeguard python3-typing-extensions python3-tz python3.12 python3.12-minimal readline-common resfinder-db sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Suggested packages: fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn gdbm-l10n low-memory-monitor krb5-doc krb5-user liblcms2-utils sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise python-git-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python-pil-doc python3-setuptools pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3.12-venv python3.12-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: ca-certificates patch less ssh-client libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python-biopython-doc python3-scipy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-olefile fonts-dejavu-extra The following NEW packages will be installed: fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 git git-man kma libatomic1 libblas3 libbrotli1 libcairo2 libcurl3t64-gnutls libdeflate0 liberror-perl libexpat1 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.5-0 liblerc4 liblmdb0 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnsl2 libopenjp2-7 libperl5.40 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsqlite3-0 libssh2-1t64 libtiff6 libtirpc-common libtirpc3t64 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase perl perl-modules-5.40 python3 python3-autocommand python3-biopython python3-cairo python3-cgecore python3-cgelib python3-chardet python3-dateutil python3-freetype python3-git python3-gitdb python3-inflect python3-jaraco.context python3-jaraco.functools python3-minimal python3-more-itertools python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-reportlab python3-rlpycairo python3-smmap python3-tabulate python3-typeguard python3-typing-extensions python3-tz python3.12 python3.12-minimal readline-common resfinder resfinder-db sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 98.1 MB of archives. After this operation, 481 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.40 all 5.40.0-6 [3022 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libperl5.40 amd64 5.40.0-6 [4326 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.40.0-6 [267 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.6-1 [814 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.3-2 [105 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.6-1 [2168 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get:12 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[169 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.6-1 [1963 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.6-1 [669 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get:27 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b1 [23.3 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b5 [307 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:39 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.4.0-1+b1 [63.6 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.10.1-2 [360 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 git-man all 1:2.45.2-1 [2158 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 git amd64 1:2.45.2-1 [8645 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 kma amd64 1.4.15-1 [220 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-6 [9284 B] Get:56 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b2 [18.2 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b2 [24.4 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b2 [804 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-6 [836 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-6 [137 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b2 [178 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:83 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB] Get:84 http://deb.debian.org/debian trixie/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get:88 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get:89 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-6 [148 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 ncbi-data all 6.1.20170106+dfsg2-4 [3540 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 ncbi-blast+ amd64 2.16.0+ds-6 [15.2 MB] Get:96 http://deb.debian.org/debian trixie/main amd64 ncbi-blast+-legacy all 2.16.0+ds-6 [10.4 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.0-1 [36.9 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get:103 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.4.0-1 [502 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.1-2 [114 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:111 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.2.5-1 [1117 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.84+dfsg-4 [1646 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 python3-cgecore all 1.5.6+ds-1 [28.7 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 python3-smmap all 6.0.0-1 [20.1 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 python3-gitdb all 4.0.11-1 [45.5 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 python3-git all 3.1.37-3 [137 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [4389 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 python3-cgelib all 0.7.3-3 [46.6 kB] Get:124 http://deb.debian.org/debian trixie/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 resfinder-db all 0.0+git20220524.fa32d9a-1 [9079 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 resfinder all 4.4.2-1 [67.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 98.1 MB in 1s (183 MB/s) Selecting previously unselected package perl-modules-5.40. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5171 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.40_5.40.0-6_all.deb ... Unpacking perl-modules-5.40 (5.40.0-6) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../1-libgdbm6t64_1.24-2_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.24-2) ... Selecting previously unselected package libgdbm-compat4t64:amd64. 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Preparing to unpack .../60-libraqm0_0.10.1-1+b2_amd64.deb ... Unpacking libraqm0:amd64 (0.10.1-1+b2) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../61-libsharpyuv0_1.4.0-0.1+b1_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../62-libwebp7_1.4.0-0.1+b1_amd64.deb ... Unpacking libwebp7:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libtiff6:amd64. Preparing to unpack .../63-libtiff6_4.5.1+git230720-5_amd64.deb ... Unpacking libtiff6:amd64 (4.5.1+git230720-5) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../64-libuv1t64_1.48.0-6_amd64.deb ... Unpacking libuv1t64:amd64 (1.48.0-6) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../65-libwebpdemux2_1.4.0-0.1+b1_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../66-libwebpmux3_1.4.0-0.1+b1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../67-ncbi-data_6.1.20170106+dfsg2-4_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-4) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../68-ncbi-blast+_2.16.0+ds-6_amd64.deb ... Unpacking ncbi-blast+ (2.16.0+ds-6) ... Selecting previously unselected package ncbi-blast+-legacy. Preparing to unpack .../69-ncbi-blast+-legacy_2.16.0+ds-6_all.deb ... Unpacking ncbi-blast+-legacy (2.16.0+ds-6) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../70-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../71-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../72-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../73-python3-typeguard_4.4.0-1_all.deb ... Unpacking python3-typeguard (4.4.0-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../74-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../75-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../76-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. 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Selecting previously unselected package python3-dateutil. Preparing to unpack .../89-python3-dateutil_2.9.0-3_all.deb ... Unpacking python3-dateutil (2.9.0-3) ... Selecting previously unselected package python3-smmap. Preparing to unpack .../90-python3-smmap_6.0.0-1_all.deb ... Unpacking python3-smmap (6.0.0-1) ... Selecting previously unselected package python3-gitdb. Preparing to unpack .../91-python3-gitdb_4.0.11-1_all.deb ... Unpacking python3-gitdb (4.0.11-1) ... Selecting previously unselected package python3-git. Preparing to unpack .../92-python3-git_3.1.37-3_all.deb ... Unpacking python3-git (3.1.37-3) ... Selecting previously unselected package python3-tz. Preparing to unpack .../93-python3-tz_2024.1-2_all.deb ... Unpacking python3-tz (2024.1-2) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../94-python3-pandas-lib_2.2.3+dfsg-5_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../95-python3-pandas_2.2.3+dfsg-5_all.deb ... Unpacking python3-pandas (2.2.3+dfsg-5) ... Selecting previously unselected package python3-cgelib. Preparing to unpack .../96-python3-cgelib_0.7.3-3_all.deb ... Unpacking python3-cgelib (0.7.3-3) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../97-python3-tabulate_0.9.0-1_all.deb ... Unpacking python3-tabulate (0.9.0-1) ... Selecting previously unselected package resfinder-db. Preparing to unpack .../98-resfinder-db_0.0+git20220524.fa32d9a-1_all.deb ... Unpacking resfinder-db (0.0+git20220524.fa32d9a-1) ... Selecting previously unselected package resfinder. Preparing to unpack .../99-resfinder_4.4.2-1_all.deb ... Unpacking resfinder (4.4.2-1) ... Setting up media-types (10.1.0) ... Setting up liblmdb0:amd64 (0.9.31-1+b2) ... Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ... Setting up liblcms2-2:amd64 (2.16-2) ... Setting up ncbi-data (6.1.20170106+dfsg2-4) ... Setting up libpixman-1-0:amd64 (0.42.2-1+b1) ... Setting up libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Setting up libxau6:amd64 (1:1.0.9-1+b2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b2) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b2) ... Setting up libgdbm6t64:amd64 (1.24-2) ... Setting up libmbedcrypto7t64:amd64 (2.28.8-1) ... Setting up resfinder-db (0.0+git20220524.fa32d9a-1) ... Setting up libgdbm-compat4t64:amd64 (1.24-2) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libbrotli1:amd64 (1.1.0-2+b5) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up libuv1t64:amd64 (1.48.0-6) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.22-1) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libgomp1:amd64 (14.2.0-6) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b1) ... Setting up libblas3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.15-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-2) ... Setting up libatomic1:amd64 (14.2.0-6) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libncursesw6:amd64 (6.5-2+b1) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:amd64 (14.2.0-6) ... Setting up libnghttp3-9:amd64 (1.4.0-1+b1) ... Setting up libwebp7:amd64 (1.4.0-0.1+b1) ... Setting up perl-modules-5.40 (5.40.0-6) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up kma (1.4.15-1) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b4) ... Setting up git-man (1:2.45.2-1) ... Setting up libx11-6:amd64 (2:1.8.7-1+b2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.6.0-1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libwebpmux3:amd64 (1.4.0-0.1+b1) ... Setting up readline-common (8.2-5) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Setting up liblapack3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libmbedx509-1t64:amd64 (2.28.8-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up libperl5.40:amd64 (5.40.0-6) ... Setting up perl (5.40.0-6) ... Setting up libglib2.0-0t64:amd64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up libmbedtls14t64:amd64 (2.28.8-1) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libcurl3t64-gnutls:amd64 (8.10.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up libcairo2:amd64 (1.18.2-2) ... Setting up liberror-perl (0.17029-2) ... Setting up libraqm0:amd64 (0.10.1-1+b2) ... Setting up git (1:2.45.2-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.1-2) ... Setting up ncbi-blast+ (2.16.0+ds-6) ... Setting up python3-pil:amd64 (10.4.0-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-smmap (6.0.0-1) ... Setting up ncbi-blast+-legacy (2.16.0+ds-6) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-cairo (1.26.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.0-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-gitdb (4.0.11-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-git (3.1.37-3) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-cgelib (0.7.3-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4) ... Setting up python3-cgecore (1.5.6+ds-1) ... /usr/lib/python3/dist-packages/cgecore/cgefinder.py:242: SyntaxWarning: invalid escape sequence '\w' start = re.search("^-*(\w+)", align_query).start(1) /usr/lib/python3/dist-packages/cgecore/cgefinder.py:243: SyntaxWarning: invalid escape sequence '\w' end = re.search("\w+(-*)$", align_query).start(1) /usr/lib/python3/dist-packages/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{' """ /usr/lib/python3/dist-packages/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w' src = re.sub('[^\w/\-\.\*]', '', src) /usr/lib/python3/dist-packages/cgecore/utility.py:492: SyntaxWarning: invalid escape sequence '\w' dst = re.sub('[^\w/\-\.\*]', '', dst) /usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: /usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: /usr/lib/python3/dist-packages/cgecore/utility.py:520: SyntaxWarning: invalid escape sequence '\w' invalid_chars = re.findall('[^\w/\-\.\*]', os.path.basename(file_)) /usr/lib/python3/dist-packages/cgecore/utility.py:539: SyntaxWarning: invalid escape sequence '\w' src = re.sub('[^\w/\-\.\*]', '', src) /usr/lib/python3/dist-packages/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w' dst = re.sub('[^\w/\-\.\*]', '', dst) /usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: /usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: Setting up resfinder (4.4.2-1) ... 1m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', '-y', 'install', 'resfinder'] 1m12.2s INFO: Running scripts post_install 1m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_install_exceptions'] 1m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_install_exceptions'] 1m12.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 1m13.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 1m13.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp64mnf1xt to sid 1m13.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 1m13.0s INFO: Running scripts pre_distupgrade 1m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_distupgrade_exceptions'] 1m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_distupgrade_exceptions'] 1m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', 'update'] 1m17.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7331 kB] Fetched 17.6 MB in 3s (6276 kB/s) Reading package lists... 1m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', 'update'] 1m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', '-yf', 'dist-upgrade'] 1m27.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libmbedcrypto16 libmbedtls21 libmbedx509-7 The following packages will be upgraded: bsdutils gcc-14-base git git-man gpgv libatomic1 libaudit-common libaudit1 libblkid1 libdebconfclient0 libgcc-s1 libgfortran5 libgomp1 libmount1 libpython3.12-minimal libpython3.12-stdlib libsmartcols1 libstdc++6 libuuid1 libx11-6 libx11-data libxau6 login mount ncbi-blast+ python3-pkg-resources python3-typeguard python3.12 python3.12-minimal resfinder tzdata util-linux 32 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 38.4 MB of archives. After this operation, 1968 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.2-10 [105 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.2-10 [35.7 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.2-10 [168 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.2-10 [199 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.2-10 [139 kB] Get:6 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.2-10 [1217 kB] Get:7 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.2-10 [154 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.0.1-3 [12.4 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.0.1-3 [54.6 kB] Get:10 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.40.2-10 [81.4 kB] Get:11 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.7-1 [671 kB] Get:12 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.7-1 [2162 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.7-1 [1965 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.7-1 [814 kB] Get:15 http://deb.debian.org/debian sid/main amd64 tzdata all 2024b-3 [255 kB] Get:16 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.45-2 [219 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-8 [9280 B] Get:18 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-8 [47.2 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-8 [714 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-8 [137 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-8 [72.7 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.273 [10.1 kB] Get:24 http://deb.debian.org/debian sid/main amd64 git-man all 1:2.45.2-1.1 [2159 kB] Get:25 http://deb.debian.org/debian sid/main amd64 git amd64 1:2.45.2-1.1 [8662 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.2-1 [355 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.2-1 [147 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.2-1 [233 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.10-1 [337 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.10-1 [813 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:32 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.16.0+ds-6+b1 [15.2 MB] Get:33 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get:34 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get:35 http://deb.debian.org/debian sid/main amd64 resfinder all 4.4.2-2 [68.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.4 MB in 0s (150 MB/s) (Reading database ... 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Preparing to unpack .../10-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) over (4.4.0-1) ... Preparing to unpack .../11-resfinder_4.4.2-2_all.deb ... Unpacking resfinder (4.4.2-2) over (4.4.2-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up resfinder (4.4.2-2) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libpython3.12-minimal:amd64 (3.12.7-1) ... Setting up libgomp1:amd64 (14.2.0-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Nov 5 04:27:11 UTC 2024. Universal Time is now: Tue Nov 5 04:27:11 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libx11-data (2:1.8.10-1) ... Setting up libatomic1:amd64 (14.2.0-8) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up mount (2.40.2-10) ... Setting up git-man (1:2.45.2-1.1) ... Setting up libx11-6:amd64 (2:1.8.10-1) ... Setting up libmbedcrypto16:amd64 (3.6.2-1) ... Setting up login (1:4.16.0-2+really2.40.2-10) ... Setting up python3.12-minimal (3.12.7-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-1) ... Setting up python3.12 (3.12.7-1) ... Setting up libmbedx509-7:amd64 (3.6.2-1) ... Setting up git (1:2.45.2-1.1) ... Setting up libmbedtls21:amd64 (3.6.2-1) ... Setting up ncbi-blast+ (2.16.0+ds-6+b1) ... Processing triggers for libc-bin (2.40-3) ... 1m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', '-yf', 'dist-upgrade'] 1m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m27.7s DUMP: 9c486996c18ed314e789e70d3d9afe85 - 1m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'show', '--no-all-versions', 'resfinder'] 1m28.1s DUMP: Package: resfinder Version: 4.4.2-2 Installed-Size: 402 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, resfinder-db, python3-cgecore, python3-tabulate, ncbi-blast+-legacy, kma, python3-git, python3-dateutil, python3-cgelib Description-en: identify acquired antimicrobial resistance genes ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria. . ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates. Description-md5: cce3ff3cc36c4c2328391a5521af12c8 Homepage: https://bitbucket.org/genomicepidemiology/resfinder Section: science Priority: optional Filename: pool/main/r/resfinder/resfinder_4.4.2-2_all.deb Size: 67988 MD5sum: 5ac3887582571c40fe761fe95b3494d0 SHA256: 9bf9bb64dabca2f4aebf075744d44eab3210970fbf335ee1f221eb3fd54a838a 1m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'show', '--no-all-versions', 'resfinder'] 1m28.1s INFO: apt-cache knows about the following packages: resfinder 1m28.1s INFO: Running scripts pre_install 1m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_database-server'] 1m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_database-server'] 1m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_exceptions'] 1m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_exceptions'] 1m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_extras'] 1m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_extras'] 1m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_foreign_architecture'] 1m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_foreign_architecture'] 1m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'policy'] 1m28.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'policy'] 1m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'policy', 'resfinder'] 1m28.2s DUMP: resfinder: Installed: 4.4.2-2 Candidate: 4.4.2-2 Version table: *** 4.4.2-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'policy', 'resfinder'] 1m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', '-y', 'install', 'resfinder'] 1m28.8s DUMP: Reading package lists... Building dependency tree... Reading state information... resfinder is already the newest version (4.4.2-2). The following packages were automatically installed and are no longer required: libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', '-y', 'install', 'resfinder'] 1m28.8s INFO: Running scripts post_install 1m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_install_exceptions'] 1m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_install_exceptions'] 1m28.8s INFO: Running scripts post_distupgrade 1m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_distupgrade_exceptions'] 1m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_distupgrade_exceptions'] 1m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_distupgrade_zz_backports'] 1m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_distupgrade_zz_backports'] 1m28.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 1m29.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 1m29.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 1m31.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 1m31.9s INFO: Running scripts pre_install 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_database-server'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_database-server'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_exceptions'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_exceptions'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_extras'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_extras'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_foreign_architecture'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_foreign_architecture'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'policy'] 1m32.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'policy'] 1m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'policy', 'resfinder'] 1m32.1s DUMP: resfinder: Installed: 4.4.2-2 Candidate: 4.4.2-2 Version table: *** 4.4.2-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-cache', 'policy', 'resfinder'] 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', '-y', 'install', 'resfinder=4.4.2-2'] 1m32.8s DUMP: Reading package lists... Building dependency tree... Reading state information... resfinder is already the newest version (4.4.2-2). The following packages were automatically installed and are no longer required: libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', '-y', 'install', 'resfinder=4.4.2-2'] 1m32.8s INFO: Running scripts post_install 1m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_install_exceptions'] 1m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_install_exceptions'] 1m32.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 1m33.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 1m34.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', '-ac', '--ignore-obsolete'] 1m43.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', '-ac', '--ignore-obsolete'] 1m43.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m43.7s DUMP: 0.15.6 1m43.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m43.7s INFO: Running adequate version 0.15.6 now. 1m43.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'resfinder'] 1m43.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'resfinder'] 1m43.8s INFO: Running scripts pre_remove 1m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m46.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m46.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_remove_exceptions'] 1m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/pre_remove_exceptions'] 1m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m46.9s DUMP: install ok installed apt apt 2.9.10 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-10 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1+b1 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1+b1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-8 install ok installed git git 1:2.45.2-1.1 install ok installed git-man git-man 1:2.45.2-1.1 install ok installed gpgv gpgv 2.2.45-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed kma kma 1.4.15-1 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.10 install ok installed libatomic1:amd64 libatomic1 14.2.0-8 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.1-3 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-3 install ok installed libblas3:amd64 libblas3 3.12.0-3+b1 install ok installed libblkid1:amd64 libblkid1 2.40.2-10 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcairo2:amd64 libcairo2 1.18.2-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-3 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.10.1-2 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.273 install ok installed libdeflate0:amd64 libdeflate0 1.22-1 install ok installed liberror-perl liberror-perl 0.17029-2 install ok installed libexpat1:amd64 libexpat1 2.6.3-2 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1+b1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1+b1 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.15-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.24-2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.24-2 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-8 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.82.2-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2+b1 install ok installed libgomp1:amd64 libgomp1 14.2.0-8 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-3 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.0.1-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-3 install ok installed liblapack3:amd64 liblapack3 3.12.0-3+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.18+dfsg-3+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4+b2 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.2-1 install ok installed libmbedcrypto7t64:amd64 libmbedcrypto7t64 2.28.8-1 install ok installed libmbedtls14t64:amd64 libmbedtls14t64 2.28.8-1 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.2-1 install ok installed libmbedx509-1t64:amd64 libmbedx509-1t64 2.28.8-1 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.2-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-10 install ok installed libncursesw6:amd64 libncursesw6 6.5-2+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.4.0-1+b1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.6.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.6.0-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b3 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b4 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b2 install ok installed libperl5.40:amd64 libperl5.40 5.40.0-6 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1+b1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.44-2 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.12.6-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.7-1 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.7-1 install ok installed libraqm0:amd64 libraqm0 0.10.1-1+b2 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-8 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-8 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b2 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.4.0-0.1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-10 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.1-1+b1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-8 install ok installed libsystemd0:amd64 libsystemd0 256.7-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-5 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3+b1 install ok installed libudev1:amd64 libudev1 256.7-3 install ok installed libunistring5:amd64 libunistring5 1.2-1+b1 install ok installed libuuid1:amd64 libuuid1 2.40.2-10 install ok installed libuv1t64:amd64 libuv1t64 1.48.0-6 install ok installed libwebp7:amd64 libwebp7 1.4.0-0.1+b1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.4.0-0.1+b1 install ok installed libwebpmux3:amd64 libwebpmux3 1.4.0-0.1+b1 install ok installed libx11-6:amd64 libx11-6 2:1.8.10-1 install ok installed libx11-data libx11-data 2:1.8.10-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3+b2 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b2 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-10 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1+b1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40.2-10 install ok installed ncbi-blast+ ncbi-blast+ 2.16.0+ds-6+b1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.16.0+ds-6 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-4 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed netbase netbase 6.4 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl perl 5.40.0-6 install ok installed perl-base perl-base 5.40.0-6 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.0-6 install ok installed python3 python3 3.12.6-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-biopython python3-biopython 1.84+dfsg-4 install ok installed python3-cairo python3-cairo 1.26.1-2 install ok installed python3-cgecore python3-cgecore 1.5.6+ds-1 install ok installed python3-cgelib python3-cgelib 0.7.3-3 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-dateutil python3-dateutil 2.9.0-3 install ok installed python3-freetype python3-freetype 2.5.1-1 install ok installed python3-git python3-git 3.1.37-3 install ok installed python3-gitdb python3-gitdb 4.0.11-1 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.0-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-minimal python3-minimal 3.12.6-1 install ok installed python3-more-itertools python3-more-itertools 10.5.0-1 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-11 install ok installed python3-pandas python3-pandas 2.2.3+dfsg-5 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.2.3+dfsg-5 install ok installed python3-pil:amd64 python3-pil 10.4.0-1 install ok installed python3-pkg-resources python3-pkg-resources 75.2.0-1 install ok installed python3-reportlab python3-reportlab 4.2.5-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-smmap python3-smmap 6.0.0-1 install ok installed python3-tabulate python3-tabulate 0.9.0-1 install ok installed python3-typeguard python3-typeguard 4.4.1-1 install ok installed python3-typing-extensions python3-typing-extensions 4.12.2-2 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3.12 python3.12 3.12.7-1 install ok installed python3.12-minimal python3.12-minimal 3.12.7-1 install ok installed readline-common readline-common 8.2-5 install ok installed resfinder resfinder 4.4.2-2 install ok installed resfinder-db resfinder-db 0.0+git20220524.fa32d9a-1 install ok installed sed sed 4.9-2 install ok installed sgml-base sgml-base 1.31 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-10 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23.1 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+7 install ok installed xml-core xml-core 0.19 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 1m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', 'remove', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'git', 'git-man', 'kma', 'libatomic1:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcurl3t64-gnutls:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedtls21:amd64', 'libmbedx509-1t64:amd64', 'libmbedx509-7:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'media-types', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-autocommand', 'python3-biopython', 'python3-cairo', 'python3-cgecore', 'python3-cgelib', 'python3-chardet', 'python3-dateutil', 'python3-freetype', 'python3-git', 'python3-gitdb', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-reportlab', 'python3-rlpycairo', 'python3-smmap', 'python3-tabulate', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3.12', 'python3.12-minimal', 'readline-common', 'resfinder-db', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'resfinder'] 2m23.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 git git-man kma libatomic1 libblas3 libbrotli1 libcairo2 libcurl3t64-gnutls libdeflate0 liberror-perl libexpat1 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.5-0 liblerc4 liblmdb0 libmbedcrypto16 libmbedcrypto7t64 libmbedtls14t64 libmbedtls21 libmbedx509-1t64 libmbedx509-7 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnsl2 libopenjp2-7 libperl5.40 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsqlite3-0 libssh2-1t64 libtiff6 libtirpc-common libtirpc3t64 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase perl perl-modules-5.40 python3 python3-autocommand python3-biopython python3-cairo python3-cgecore python3-cgelib python3-chardet python3-dateutil python3-freetype python3-git python3-gitdb python3-inflect python3-jaraco.context python3-jaraco.functools python3-minimal python3-more-itertools python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-reportlab python3-rlpycairo python3-smmap python3-tabulate python3-typeguard python3-typing-extensions python3-tz python3.12 python3.12-minimal readline-common resfinder resfinder-db sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 0 newly installed, 129 to remove and 0 not upgraded. After this operation, 483 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15822 files and directories currently installed.) Removing resfinder (4.4.2-2) ... Removing python3-cgecore (1.5.6+ds-1) ... Removing python3-biopython (1.84+dfsg-4) ... Removing python3-reportlab (4.2.5-1) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo (1.26.1-2) ... Removing libcairo2:amd64 (1.18.2-2) ... Removing libfontconfig1:amd64 (2.15.0-1.1+b1) ... Removing fontconfig-config (2.15.0-1.1+b1) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing fonts-urw-base35 (20200910-8) ... Removing python3-cgelib (0.7.3-3) ... Removing python3-git (3.1.37-3) ... Removing git (1:2.45.2-1.1) ... Removing git-man (1:2.45.2-1.1) ... Removing kma (1.4.15-1) ... Removing python3-pil:amd64 (10.4.0-1) ... Removing libraqm0:amd64 (0.10.1-1+b2) ... Removing libharfbuzz0b:amd64 (10.0.1-1) ... Removing libglib2.0-0t64:amd64 (2.82.2-2) ... Removing libatomic1:amd64 (14.2.0-8) ... Removing python3-pandas (2.2.3+dfsg-5) ... Removing python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... Removing python3-numpy (1:1.26.4+ds-11) ... Removing liblapack3:amd64 (3.12.0-3+b1) ... Removing libblas3:amd64 (3.12.0-3+b1) ... Removing xfonts-utils (1:7.7+7) ... Removing python3-freetype (2.5.1-1) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libcurl3t64-gnutls:amd64 (8.10.1-2) ... Removing libbrotli1:amd64 (1.1.0-2+b5) ... Removing libtiff6:amd64 (4.5.1+git230720-5) ... Removing libdeflate0:amd64 (1.22-1) ... Removing liberror-perl (0.17029-2) ... Removing ncbi-blast+-legacy (2.16.0+ds-6) ... Removing ncbi-blast+ (2.16.0+ds-6+b1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-pkg-resources (75.2.0-1) ... Removing python3-inflect (7.3.1-2) ... Removing python3-typeguard (4.4.1-1) ... Removing python3-tz (2024.1-2) ... Removing libfontenc1:amd64 (1:1.1.8-1+b1) ... Removing libfribidi0:amd64 (1.0.15-1) ... Removing perl (5.40.0-6) ... Removing libperl5.40:amd64 (5.40.0-6) ... Removing libgdbm-compat4t64:amd64 (1.24-2) ... Removing libgdbm6t64:amd64 (1.24-2) ... Removing libgfortran5:amd64 (14.2.0-8) ... Removing libimagequant0:amd64 (2.18.0-1+b2) ... Removing libgomp1:amd64 (14.2.0-8) ... Removing libgraphite2-3:amd64 (1.3.14-2+b1) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Removing liblcms2-2:amd64 (2.16-2) ... Removing libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Removing liblerc4:amd64 (4.0.0+ds-4+b2) ... Removing liblmdb0:amd64 (0.9.31-1+b2) ... Removing libmbedtls21:amd64 (3.6.2-1) ... Removing libmbedx509-7:amd64 (3.6.2-1) ... Removing libmbedcrypto16:amd64 (3.6.2-1) ... Removing libmbedtls14t64:amd64 (2.28.8-1) ... Removing libmbedx509-1t64:amd64 (2.28.8-1) ... Removing libmbedcrypto7t64:amd64 (2.28.8-1) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libnghttp3-9:amd64 (1.4.0-1+b1) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Removing libngtcp2-16:amd64 (1.6.0-1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b4) ... Removing libpixman-1-0:amd64 (0.42.2-1+b1) ... Removing libpng16-16t64:amd64 (1.6.44-2) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Removing libwebpmux3:amd64 (1.4.0-0.1+b1) ... Removing libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Removing libwebp7:amd64 (1.4.0-0.1+b1) ... Removing libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libuv1t64:amd64 (1.48.0-6) ... Removing libxrender1:amd64 (1:0.9.10-1.1+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b2) ... Removing libx11-6:amd64 (2:1.8.10-1) ... Removing libx11-data (2:1.8.10-1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3+b2) ... Removing ncbi-data (6.1.20170106+dfsg2-4) ... Removing perl-modules-5.40 (5.40.0-6) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-dateutil (2.9.0-3) ... Removing python3-gitdb (4.0.11-1) ... Removing python3-jaraco.context (6.0.0-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.5.0-1) ... Removing python3-smmap (6.0.0-1) ... Removing python3-tabulate (0.9.0-1) ... Removing python3-typing-extensions (4.12.2-2) ... Removing resfinder-db (0.0+git20220524.fa32d9a-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing python3 (3.12.6-1) ... Removing python3.12 (3.12.7-1) ... Removing python3-minimal (3.12.6-1) ... Removing python3.12-minimal (3.12.7-1) ... Removing libexpat1:amd64 (2.6.3-2) ... Removing libpython3-stdlib:amd64 (3.12.6-1) ... Removing libpython3.12-stdlib:amd64 (3.12.7-1) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-3+b3) ... Removing libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-3) ... Removing libkrb5-3:amd64 (1.21.3-3) ... Removing libk5crypto3:amd64 (1.21.3-3) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-3) ... Removing libncursesw6:amd64 (6.5-2+b1) ... Removing libpython3.12-minimal:amd64 (3.12.7-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-5) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libtirpc-common (1.3.4+ds-1.3) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-5) ... Processing triggers for libc-bin (2.40-3) ... 2m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', 'remove', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'git', 'git-man', 'kma', 'libatomic1:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcurl3t64-gnutls:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedtls21:amd64', 'libmbedx509-1t64:amd64', 'libmbedx509-7:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'media-types', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-autocommand', 'python3-biopython', 'python3-cairo', 'python3-cgecore', 'python3-cgelib', 'python3-chardet', 'python3-dateutil', 'python3-freetype', 'python3-git', 'python3-gitdb', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-reportlab', 'python3-rlpycairo', 'python3-smmap', 'python3-tabulate', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3.12', 'python3.12-minimal', 'readline-common', 'resfinder-db', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'resfinder'] 2m23.0s INFO: Running scripts post_remove 2m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_remove_exceptions'] 2m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_remove_exceptions'] 2m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg', '--purge', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'git', 'git-man', 'kma', 'libatomic1:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcurl3t64-gnutls:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedtls21:amd64', 'libmbedx509-1t64:amd64', 'libmbedx509-7:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'media-types', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-autocommand', 'python3-biopython', 'python3-cairo', 'python3-cgecore', 'python3-cgelib', 'python3-chardet', 'python3-dateutil', 'python3-freetype', 'python3-git', 'python3-gitdb', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-reportlab', 'python3-rlpycairo', 'python3-smmap', 'python3-tabulate', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3.12', 'python3.12-minimal', 'readline-common', 'resfinder-db', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 2m23.3s DUMP: (Reading database ... 5223 files and directories currently installed.) Purging configuration files for fontconfig-config (2.15.0-1.1+b1) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed Purging configuration files for fonts-urw-base35 (20200910-8) ... Purging configuration files for git (1:2.45.2-1.1) ... dpkg: warning: ignoring request to remove git-man which isn't installed dpkg: warning: ignoring request to remove kma which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.82.2-2) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-3) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto7t64 which isn't installed dpkg: warning: ignoring request to remove libmbedtls14t64 which isn't installed dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-1t64 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-16 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libperl5.40 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.7-1) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-5) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1.3) ... Purging configuration files for libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... dpkg: warning: ignoring request to remove libuv1t64 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed Purging configuration files for media-types (10.1.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg2-4) ... Purging configuration files for netbase (6.4) ... Purging configuration files for perl (5.40.0-6) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed Purging configuration files for python3 (3.12.6-1) ... dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-cgecore which isn't installed dpkg: warning: ignoring request to remove python3-cgelib which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-git which isn't installed dpkg: warning: ignoring request to remove python3-gitdb which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3-smmap which isn't installed dpkg: warning: ignoring request to remove python3-tabulate which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.7-1) ... Purging configuration files for readline-common (8.2-5) ... dpkg: warning: ignoring request to remove resfinder-db which isn't installed Purging configuration files for sgml-base (1.31) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23.1) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+7) ... Purging configuration files for xml-core (0.19) ... 2m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg', '--purge', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'git', 'git-man', 'kma', 'libatomic1:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcurl3t64-gnutls:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedtls21:amd64', 'libmbedx509-1t64:amd64', 'libmbedx509-7:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'media-types', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-autocommand', 'python3-biopython', 'python3-cairo', 'python3-cgecore', 'python3-cgelib', 'python3-chardet', 'python3-dateutil', 'python3-freetype', 'python3-git', 'python3-gitdb', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-reportlab', 'python3-rlpycairo', 'python3-smmap', 'python3-tabulate', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3.12', 'python3.12-minimal', 'readline-common', 'resfinder-db', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 2m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg', '--purge', 'resfinder'] 2m23.3s DUMP: dpkg: warning: ignoring request to remove resfinder which isn't installed 2m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg', '--purge', 'resfinder'] 2m23.3s INFO: Running scripts post_purge 2m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_purge_exceptions'] 2m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_purge_exceptions'] 2m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg', '--purge', '--pending'] 2m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg', '--purge', '--pending'] 2m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg', '--remove', '--pending'] 2m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg', '--remove', '--pending'] 2m23.4s INFO: Running scripts post_test 2m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_test_exceptions'] 2m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'tmp/scripts/post_test_exceptions'] 2m23.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 2m23.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 2m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg-divert', '--list'] 2m23.7s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 2m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'dpkg-divert', '--list'] 2m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', 'clean'] 2m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt', 'apt-get', 'clean'] 2m23.7s DEBUG: Recording chroot state 2m24.2s INFO: Warning: Package purging left files on system: /etc/fonts/ owned by: fontconfig-config, fonts-urw-base35, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-urw-base35, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned 2m24.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/shm'] 2m24.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/shm'] 2m24.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/console'] 2m24.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/console'] 2m24.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/ptmx'] 2m24.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/ptmx'] 2m24.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/pts'] 2m24.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/dev/pts'] 2m24.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/proc'] 2m24.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt/proc'] 2m24.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 2m24.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp64mnf1xt'] 2m24.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp64mnf1xt 2m24.7s INFO: PASS: Upgrading between Debian distributions. 2m24.7s INFO: PASS: All tests. 2m24.7s INFO: piuparts run ends. ret=0 End: 2024-11-05 04:28:12 GMT