Start: 2024-10-21 03:46:11 GMT [testing] Package: seqkit Source: seqkit (2.8.2+ds-1) Version: 2.8.2+ds-1+b2 Installed-Size: 17864 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34) Description: cross-platform and ultrafast toolkit for FASTA/Q file manipulation Homepage: https://github.com/shenwei356/seqkit Built-Using: golang-1.23 (= 1.23.1-3), golang-fsnotify (= 1.7.0-1), golang-github-acarl005-stripansi (= 0.0~git20180116.5a71ef0-3), golang-github-ajstarks-svgo (= 2012-01-27-3), golang-github-biogo-biogo (= 1.0.4-1), golang-github-biogo-hts (= 1.4.5+dfsg1-1), golang-github-bsipos-thist (= 1.0.0-2), golang-github-cespare-xxhash (= 2.3.0-1), golang-github-cznic-sortutil (= 0.0~git20150617.0.4c73428-3), golang-github-dsnet-compress (= 0.0.2~git20230904.39efe44+dfsg1-2), golang-github-dustin-go-humanize (= 1.0.1-1), golang-github-edsrzf-mmap-go (= 1.1.0-1), golang-github-elliotwutingfeng-asciiset (= 0.0~git20240214.24af97c-2), golang-github-fogleman-gg (= 1.3.0-3), golang-github-golang-freetype (= 0.0~git20170609.e2365df+dfsg-2), golang-github-iafan-cwalk (= 0.0~git20191125.dd7f505-3), golang-github-jung-kurt-gofpdf (= 2.17.2+ds-3), golang-github-klauspost-compress (= 1.17.9+ds1-1), golang-github-klauspost-pgzip (= 1.2.6-1), golang-github-logrusorgru-aurora (= 3.0.0-2), golang-github-mattn-go-colorable (= 0.1.13-1), golang-github-mattn-go-isatty (= 0.0.20-1), golang-github-mattn-go-runewidth (= 0.0.15-2), golang-github-mitchellh-go-homedir (= 1.1.0-1), golang-github-op-go-logging (= 1+git20160315.970db52-2), golang-github-pkg-errors (= 0.9.1-3), golang-github-rivo-uniseg (= 0.4.7-1), golang-github-shenwei356-bio (= 0.13.3-1), golang-github-shenwei356-breader (= 0.3.2-1), golang-github-shenwei356-bwt (= 0.6.0-2), golang-github-shenwei356-natsort (= 0.0~git20190418.600d539-3), golang-github-shenwei356-stable (= 0.1.7-2), golang-github-shenwei356-util (= 0.5.2-1), golang-github-shenwei356-xopen (= 0.0~git20231203.5ad79ea-1), golang-github-smallfish-simpleyaml (= 0.0~git20170911.a320310-2), golang-github-spf13-cobra (= 1.8.1-1), golang-github-spf13-pflag (= 1.0.6~git20210604-d5e0c0615ace-1), golang-github-twotwotwo-sorts (= 0.0~git20160814.bf5c1f2-3), golang-github-ulikunitz-xz (= 0.5.6-2), golang-github-vbauerster-mpb (= 8.6.1-3), golang-github-vividcortex-ewma (= 1.1.1-2), golang-go.crypto (= 1:0.25.0-1), golang-golang-x-image (= 0.18.0-1), golang-golang-x-sys (= 0.22.0-1), golang-golang-x-term (= 0.22.0-1), golang-gonum-v1-plot (= 0.7.0-5), golang-yaml.v2 (= 2.4.0-4) Description-md5: cbf53322980bad60a2f766bd99556176 Section: science Priority: optional Filename: pool/main/s/seqkit/seqkit_2.8.2+ds-1+b2_amd64.deb Size: 7065376 MD5sum: 1dac4d9660067354dd69962f301b8920 SHA256: ae11a75f322d1c54e07923d475121badd8d08c63b97a035d7262585b82ea126b [sid] Package: seqkit Source: seqkit (2.8.2+ds-1) Version: 2.8.2+ds-1+b3 Installed-Size: 17868 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34) Description: cross-platform and ultrafast toolkit for FASTA/Q file manipulation Homepage: https://github.com/shenwei356/seqkit Built-Using: golang-1.23 (= 1.23.2-1), golang-fsnotify (= 1.7.0-1), golang-github-acarl005-stripansi (= 0.0~git20180116.5a71ef0-3), golang-github-ajstarks-svgo (= 2012-01-27-3), golang-github-biogo-biogo (= 1.0.4-1), golang-github-biogo-hts (= 1.4.5+dfsg1-1), golang-github-bsipos-thist (= 1.0.0-2), golang-github-cespare-xxhash (= 2.3.0-1), golang-github-cznic-sortutil (= 0.0~git20150617.0.4c73428-3), golang-github-dsnet-compress (= 0.0.2~git20230904.39efe44+dfsg1-2), golang-github-dustin-go-humanize (= 1.0.1-1), golang-github-edsrzf-mmap-go (= 1.1.0-1), golang-github-elliotwutingfeng-asciiset (= 0.0~git20240214.24af97c-2), golang-github-fogleman-gg (= 1.3.0-3), golang-github-golang-freetype (= 0.0~git20170609.e2365df+dfsg-2), golang-github-iafan-cwalk (= 0.0~git20191125.dd7f505-3), golang-github-jung-kurt-gofpdf (= 2.17.2+ds-3), golang-github-klauspost-compress (= 1.17.10+ds1-1), golang-github-klauspost-pgzip (= 1.2.6-1), golang-github-logrusorgru-aurora (= 3.0.0-2), golang-github-mattn-go-colorable (= 0.1.13-1), golang-github-mattn-go-isatty (= 0.0.20-1), golang-github-mattn-go-runewidth (= 0.0.15-2), golang-github-mitchellh-go-homedir (= 1.1.0-1), golang-github-op-go-logging (= 1+git20160315.970db52-2), golang-github-pkg-errors (= 0.9.1-3), golang-github-rivo-uniseg (= 0.4.7-1), golang-github-shenwei356-bio (= 0.13.3-1), golang-github-shenwei356-breader (= 0.3.2-1), golang-github-shenwei356-bwt (= 0.6.0-2), golang-github-shenwei356-natsort (= 0.0~git20190418.600d539-3), golang-github-shenwei356-stable (= 0.1.7-2), golang-github-shenwei356-util (= 0.5.2-1), golang-github-shenwei356-xopen (= 0.0~git20231203.5ad79ea-1), golang-github-smallfish-simpleyaml (= 0.0~git20170911.a320310-2), golang-github-spf13-cobra (= 1.8.1-1), golang-github-spf13-pflag (= 1.0.6~git20210604-d5e0c0615ace-1), golang-github-twotwotwo-sorts (= 0.0~git20160814.bf5c1f2-3), golang-github-ulikunitz-xz (= 0.5.6-2), golang-github-vbauerster-mpb (= 8.6.1-3), golang-github-vividcortex-ewma (= 1.1.1-2), golang-go.crypto (= 1:0.25.0-1), golang-golang-x-image (= 0.18.0-1), golang-golang-x-sys (= 0.22.0-1), golang-golang-x-term (= 0.22.0-1), golang-gonum-v1-plot (= 0.7.0-5), golang-yaml.v2 (= 2.4.0-4) Description-md5: cbf53322980bad60a2f766bd99556176 Section: science Priority: optional Filename: pool/main/s/seqkit/seqkit_2.8.2+ds-1+b3_amd64.deb Size: 7069252 MD5sum: ef20c004aaf7deef2185841762eda4af SHA256: 607a5e5ef4ac99dc80d44e8949b80d3c1048681cbd538f0e69baaa12c459c101 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt seqkit=2.8.2+ds-1+b3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt seqkit=2.8.2+ds-1+b3 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpa9f30xwy 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpa9f30xwy 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpa9f30xwy/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', 'update'] 0m3.2s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [172 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9331 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6234 kB] Fetched 15.7 MB in 2s (9869 kB/s) Reading package lists... 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', 'update'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', '-yf', 'dist-upgrade'] 0m4.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bash libdb5.3t64 libsystemd0 libudev1 sysvinit-utils 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2763 kB of archives. After this operation, 18.4 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 bash amd64 5.2.32-1+b2 [1500 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 sysvinit-utils amd64 3.10-3 [33.0 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 256.7-2 [382 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 256.7-2 [145 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2763 kB in 0s (50.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5140 files and directories currently installed.) Preparing to unpack .../bash_5.2.32-1+b2_amd64.deb ... Unpacking bash (5.2.32-1+b2) over (5.2.32-1+b1) ... Setting up bash (5.2.32-1+b2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5140 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.10-3_amd64.deb ... Unpacking sysvinit-utils (3.10-3) over (3.10-2) ... Setting up sysvinit-utils (3.10-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5140 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-9) over (5.3.28+dfsg2-7) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5140 files and directories currently installed.) Preparing to unpack .../libsystemd0_256.7-2_amd64.deb ... Unpacking libsystemd0:amd64 (256.7-2) over (256.7-1) ... Setting up libsystemd0:amd64 (256.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5140 files and directories currently installed.) Preparing to unpack .../libudev1_256.7-2_amd64.deb ... Unpacking libudev1:amd64 (256.7-2) over (256.7-1) ... Setting up libudev1:amd64 (256.7-2) ... Processing triggers for debianutils (5.20) ... Processing triggers for libc-bin (2.40-3) ... 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', '-yf', 'dist-upgrade'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.3s DUMP: ca111f865b2c758d894b83ca5485bf59 - 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.3s INFO: Running scripts post_setup 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_setup_dummy_users'] 0m6.4s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_setup_dummy_users'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_setup_forbid_home'] 0m6.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_setup_forbid_home'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_setup_minimize'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_setup_minimize'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_setup_zz_backports'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_setup_zz_backports'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.4s DUMP: install ok installed apt apt 2.9.8 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-6 install ok installed gpgv gpgv 2.2.44-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.8 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:3.1.2-4 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-4+b1 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 256.7-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.7-2 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.10-3 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m6.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m6.9s INFO: Running scripts is_testable 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/is_testable_uninstallable'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/is_testable_uninstallable'] 0m6.9s INFO: Running scripts pre_test 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_test_exceptions'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_test_exceptions'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_test_root_password'] 0m7.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_test_root_password'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'show', '--no-all-versions', 'seqkit'] 0m7.2s DUMP: Package: seqkit Source: seqkit (2.8.2+ds-1) Version: 2.8.2+ds-1+b2 Installed-Size: 17864 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34) Description-en: cross-platform and ultrafast toolkit for FASTA/Q file manipulation SeqKit describes a cross-platform ultrafast comprehensive toolkit for FASTA/Q processing. SeqKit provides executable binary files for all major operating systems, including Windows, Linux, and Mac OS X, and can be directly used without any dependencies or pre-configurations. SeqKit demonstrates competitive performance in execution time and memory usage compared to similar tools. The efficiency and usability of SeqKit enable researchers to rapidly accomplish common FASTA/Q file manipulations. Description-md5: cbf53322980bad60a2f766bd99556176 Homepage: https://github.com/shenwei356/seqkit Built-Using: golang-1.23 (= 1.23.1-3), golang-fsnotify (= 1.7.0-1), golang-github-acarl005-stripansi (= 0.0~git20180116.5a71ef0-3), golang-github-ajstarks-svgo (= 2012-01-27-3), golang-github-biogo-biogo (= 1.0.4-1), golang-github-biogo-hts (= 1.4.5+dfsg1-1), golang-github-bsipos-thist (= 1.0.0-2), golang-github-cespare-xxhash (= 2.3.0-1), golang-github-cznic-sortutil (= 0.0~git20150617.0.4c73428-3), golang-github-dsnet-compress (= 0.0.2~git20230904.39efe44+dfsg1-2), golang-github-dustin-go-humanize (= 1.0.1-1), golang-github-edsrzf-mmap-go (= 1.1.0-1), golang-github-elliotwutingfeng-asciiset (= 0.0~git20240214.24af97c-2), golang-github-fogleman-gg (= 1.3.0-3), golang-github-golang-freetype (= 0.0~git20170609.e2365df+dfsg-2), golang-github-iafan-cwalk (= 0.0~git20191125.dd7f505-3), golang-github-jung-kurt-gofpdf (= 2.17.2+ds-3), golang-github-klauspost-compress (= 1.17.9+ds1-1), golang-github-klauspost-pgzip (= 1.2.6-1), golang-github-logrusorgru-aurora (= 3.0.0-2), golang-github-mattn-go-colorable (= 0.1.13-1), golang-github-mattn-go-isatty (= 0.0.20-1), golang-github-mattn-go-runewidth (= 0.0.15-2), golang-github-mitchellh-go-homedir (= 1.1.0-1), golang-github-op-go-logging (= 1+git20160315.970db52-2), golang-github-pkg-errors (= 0.9.1-3), golang-github-rivo-uniseg (= 0.4.7-1), golang-github-shenwei356-bio (= 0.13.3-1), golang-github-shenwei356-breader (= 0.3.2-1), golang-github-shenwei356-bwt (= 0.6.0-2), golang-github-shenwei356-natsort (= 0.0~git20190418.600d539-3), golang-github-shenwei356-stable (= 0.1.7-2), golang-github-shenwei356-util (= 0.5.2-1), golang-github-shenwei356-xopen (= 0.0~git20231203.5ad79ea-1), golang-github-smallfish-simpleyaml (= 0.0~git20170911.a320310-2), golang-github-spf13-cobra (= 1.8.1-1), golang-github-spf13-pflag (= 1.0.6~git20210604-d5e0c0615ace-1), golang-github-twotwotwo-sorts (= 0.0~git20160814.bf5c1f2-3), golang-github-ulikunitz-xz (= 0.5.6-2), golang-github-vbauerster-mpb (= 8.6.1-3), golang-github-vividcortex-ewma (= 1.1.1-2), golang-go.crypto (= 1:0.25.0-1), golang-golang-x-image (= 0.18.0-1), golang-golang-x-sys (= 0.22.0-1), golang-golang-x-term (= 0.22.0-1), golang-gonum-v1-plot (= 0.7.0-5), golang-yaml.v2 (= 2.4.0-4) Section: science Priority: optional Filename: pool/main/s/seqkit/seqkit_2.8.2+ds-1+b2_amd64.deb Size: 7065376 MD5sum: 1dac4d9660067354dd69962f301b8920 SHA256: ae11a75f322d1c54e07923d475121badd8d08c63b97a035d7262585b82ea126b 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'show', '--no-all-versions', 'seqkit'] 0m7.2s INFO: apt-cache knows about the following packages: seqkit 0m7.2s INFO: Running scripts pre_install 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_extras'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_extras'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'policy'] 0m7.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'policy'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'policy', 'seqkit'] 0m7.3s DUMP: seqkit: Installed: (none) Candidate: 2.8.2+ds-1+b2 Version table: 2.8.2+ds-1+b2 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'policy', 'seqkit'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', '-y', 'install', 'seqkit'] 0m8.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: seqkit 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 7065 kB of archives. After this operation, 18.3 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 seqkit amd64 2.8.2+ds-1+b2 [7065 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7065 kB in 0s (24.3 MB/s) Selecting previously unselected package seqkit. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5144 files and directories currently installed.) Preparing to unpack .../seqkit_2.8.2+ds-1+b2_amd64.deb ... Unpacking seqkit (2.8.2+ds-1+b2) ... Setting up seqkit (2.8.2+ds-1+b2) ... 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', '-y', 'install', 'seqkit'] 0m8.8s INFO: Running scripts post_install 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_install_exceptions'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_install_exceptions'] 0m8.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m9.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m9.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpa9f30xwy to sid 0m9.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m9.2s INFO: Running scripts pre_distupgrade 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', 'update'] 0m12.5s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7343 kB] Fetched 17.6 MB in 2s (7911 kB/s) Reading package lists... 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', 'update'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', '-yf', 'dist-upgrade'] 0m15.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt gcc-14-base libapt-pkg6.0t64 libaudit-common libaudit1 libcap-ng0 libgcc-s1 libstdc++6 perl-base seqkit tzdata 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.4 MB of archives. After this operation, 81.9 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.40.0-6 [1675 kB] Get:2 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-7 [46.9 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-7 [72.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-7 [713 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.9 [1045 kB] Get:6 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.9 [1413 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.0.1-1 [12.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.5-3 [17.2 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.0.1-1 [54.5 kB] Get:10 http://deb.debian.org/debian sid/main amd64 tzdata all 2024b-3 [255 kB] Get:11 http://deb.debian.org/debian sid/main amd64 seqkit amd64 2.8.2+ds-1+b3 [7069 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.4 MB in 0s (101 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5162 files and directories currently installed.) Preparing to unpack .../perl-base_5.40.0-6_amd64.deb ... Unpacking perl-base (5.40.0-6) over (5.38.2-5) ... Setting up perl-base (5.40.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5161 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14.2.0-7_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-7) over (14.2.0-6) ... Setting up gcc-14-base:amd64 (14.2.0-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5161 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14.2.0-7_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-7) over (14.2.0-6) ... Setting up libgcc-s1:amd64 (14.2.0-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5161 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-7_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-7) over (14.2.0-6) ... Setting up libstdc++6:amd64 (14.2.0-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5161 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.9_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.9) over (2.9.8) ... Setting up libapt-pkg6.0t64:amd64 (2.9.9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5161 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.9_amd64.deb ... Unpacking apt (2.9.9) over (2.9.8) ... Setting up apt (2.9.9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5161 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.0.1-1_all.deb ... Unpacking libaudit-common (1:4.0.1-1) over (1:3.1.2-4) ... Setting up libaudit-common (1:4.0.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5161 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.5-3_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.5-3) over (0.8.5-2) ... Setting up libcap-ng0:amd64 (0.8.5-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5161 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.1-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.1-1) over (1:3.1.2-4+b1) ... Setting up libaudit1:amd64 (1:4.0.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5160 files and directories currently installed.) Preparing to unpack .../tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) over (2024a-4) ... Preparing to unpack .../seqkit_2.8.2+ds-1+b3_amd64.deb ... Unpacking seqkit (2.8.2+ds-1+b3) over (2.8.2+ds-1+b2) ... Setting up seqkit (2.8.2+ds-1+b3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Oct 21 03:46:26 UTC 2024. Universal Time is now: Mon Oct 21 03:46:26 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Processing triggers for libc-bin (2.40-3) ... 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', '-yf', 'dist-upgrade'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.5s DUMP: bd3199b32d53dc12cf3fd24e43e269c6 - 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'show', '--no-all-versions', 'seqkit'] 0m16.7s DUMP: Package: seqkit Source: seqkit (2.8.2+ds-1) Version: 2.8.2+ds-1+b3 Installed-Size: 17868 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34) Description-en: cross-platform and ultrafast toolkit for FASTA/Q file manipulation SeqKit describes a cross-platform ultrafast comprehensive toolkit for FASTA/Q processing. SeqKit provides executable binary files for all major operating systems, including Windows, Linux, and Mac OS X, and can be directly used without any dependencies or pre-configurations. SeqKit demonstrates competitive performance in execution time and memory usage compared to similar tools. The efficiency and usability of SeqKit enable researchers to rapidly accomplish common FASTA/Q file manipulations. Description-md5: cbf53322980bad60a2f766bd99556176 Homepage: https://github.com/shenwei356/seqkit Built-Using: golang-1.23 (= 1.23.2-1), golang-fsnotify (= 1.7.0-1), golang-github-acarl005-stripansi (= 0.0~git20180116.5a71ef0-3), golang-github-ajstarks-svgo (= 2012-01-27-3), golang-github-biogo-biogo (= 1.0.4-1), golang-github-biogo-hts (= 1.4.5+dfsg1-1), golang-github-bsipos-thist (= 1.0.0-2), golang-github-cespare-xxhash (= 2.3.0-1), golang-github-cznic-sortutil (= 0.0~git20150617.0.4c73428-3), golang-github-dsnet-compress (= 0.0.2~git20230904.39efe44+dfsg1-2), golang-github-dustin-go-humanize (= 1.0.1-1), golang-github-edsrzf-mmap-go (= 1.1.0-1), golang-github-elliotwutingfeng-asciiset (= 0.0~git20240214.24af97c-2), golang-github-fogleman-gg (= 1.3.0-3), golang-github-golang-freetype (= 0.0~git20170609.e2365df+dfsg-2), golang-github-iafan-cwalk (= 0.0~git20191125.dd7f505-3), golang-github-jung-kurt-gofpdf (= 2.17.2+ds-3), golang-github-klauspost-compress (= 1.17.10+ds1-1), golang-github-klauspost-pgzip (= 1.2.6-1), golang-github-logrusorgru-aurora (= 3.0.0-2), golang-github-mattn-go-colorable (= 0.1.13-1), golang-github-mattn-go-isatty (= 0.0.20-1), golang-github-mattn-go-runewidth (= 0.0.15-2), golang-github-mitchellh-go-homedir (= 1.1.0-1), golang-github-op-go-logging (= 1+git20160315.970db52-2), golang-github-pkg-errors (= 0.9.1-3), golang-github-rivo-uniseg (= 0.4.7-1), golang-github-shenwei356-bio (= 0.13.3-1), golang-github-shenwei356-breader (= 0.3.2-1), golang-github-shenwei356-bwt (= 0.6.0-2), golang-github-shenwei356-natsort (= 0.0~git20190418.600d539-3), golang-github-shenwei356-stable (= 0.1.7-2), golang-github-shenwei356-util (= 0.5.2-1), golang-github-shenwei356-xopen (= 0.0~git20231203.5ad79ea-1), golang-github-smallfish-simpleyaml (= 0.0~git20170911.a320310-2), golang-github-spf13-cobra (= 1.8.1-1), golang-github-spf13-pflag (= 1.0.6~git20210604-d5e0c0615ace-1), golang-github-twotwotwo-sorts (= 0.0~git20160814.bf5c1f2-3), golang-github-ulikunitz-xz (= 0.5.6-2), golang-github-vbauerster-mpb (= 8.6.1-3), golang-github-vividcortex-ewma (= 1.1.1-2), golang-go.crypto (= 1:0.25.0-1), golang-golang-x-image (= 0.18.0-1), golang-golang-x-sys (= 0.22.0-1), golang-golang-x-term (= 0.22.0-1), golang-gonum-v1-plot (= 0.7.0-5), golang-yaml.v2 (= 2.4.0-4) Section: science Priority: optional Filename: pool/main/s/seqkit/seqkit_2.8.2+ds-1+b3_amd64.deb Size: 7069252 MD5sum: ef20c004aaf7deef2185841762eda4af SHA256: 607a5e5ef4ac99dc80d44e8949b80d3c1048681cbd538f0e69baaa12c459c101 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'show', '--no-all-versions', 'seqkit'] 0m16.7s INFO: apt-cache knows about the following packages: seqkit 0m16.7s INFO: Running scripts pre_install 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_database-server'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_database-server'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_exceptions'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_exceptions'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_extras'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_extras'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'policy'] 0m16.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'policy'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'policy', 'seqkit'] 0m16.9s DUMP: seqkit: Installed: 2.8.2+ds-1+b3 Candidate: 2.8.2+ds-1+b3 Version table: *** 2.8.2+ds-1+b3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'policy', 'seqkit'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', '-y', 'install', 'seqkit'] 0m17.3s DUMP: Reading package lists... Building dependency tree... Reading state information... seqkit is already the newest version (2.8.2+ds-1+b3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', '-y', 'install', 'seqkit'] 0m17.3s INFO: Running scripts post_install 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_install_exceptions'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_install_exceptions'] 0m17.3s INFO: Running scripts post_distupgrade 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m17.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m17.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m17.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m17.9s INFO: Running scripts pre_install 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_database-server'] 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_database-server'] 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_exceptions'] 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_exceptions'] 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_extras'] 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_extras'] 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'policy'] 0m18.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'policy'] 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'policy', 'seqkit'] 0m18.0s DUMP: seqkit: Installed: 2.8.2+ds-1+b3 Candidate: 2.8.2+ds-1+b3 Version table: *** 2.8.2+ds-1+b3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-cache', 'policy', 'seqkit'] 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', '-y', 'install', 'seqkit=2.8.2+ds-1+b3'] 0m18.5s DUMP: Reading package lists... Building dependency tree... Reading state information... seqkit is already the newest version (2.8.2+ds-1+b3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', '-y', 'install', 'seqkit=2.8.2+ds-1+b3'] 0m18.5s INFO: Running scripts post_install 0m18.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_install_exceptions'] 0m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_install_exceptions'] 0m18.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m18.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m19.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', '-ac', '--ignore-obsolete'] 0m20.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', '-ac', '--ignore-obsolete'] 0m20.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.0s DUMP: 0.15.6 0m20.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.0s INFO: Running adequate version 0.15.6 now. 0m20.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'seqkit'] 0m20.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'seqkit'] 0m20.1s INFO: Running scripts pre_remove 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_remove_exceptions'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/pre_remove_exceptions'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.0s DUMP: install ok installed apt apt 2.9.9 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-7 install ok installed gpgv gpgv 2.2.44-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.9 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-1 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-3 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-7 install ok installed libsystemd0:amd64 libsystemd0 256.7-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.7-2 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.40.0-6 install ok installed sed sed 4.9-2 install ok installed seqkit seqkit 2.8.2+ds-1+b3 install ok installed sysvinit-utils sysvinit-utils 3.10-3 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', 'remove', 'seqkit'] 0m22.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: seqkit 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 18.3 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5148 files and directories currently installed.) Removing seqkit (2.8.2+ds-1+b3) ... 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', 'remove', 'seqkit'] 0m22.3s INFO: Running scripts post_remove 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_remove_exceptions'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_remove_exceptions'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'dpkg', '--purge', 'seqkit'] 0m22.3s DUMP: dpkg: warning: ignoring request to remove seqkit which isn't installed 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'dpkg', '--purge', 'seqkit'] 0m22.3s INFO: Running scripts post_purge 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_purge_exceptions'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_purge_exceptions'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'dpkg', '--purge', '--pending'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'dpkg', '--purge', '--pending'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'dpkg', '--remove', '--pending'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'dpkg', '--remove', '--pending'] 0m22.3s INFO: Running scripts post_test 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_test_exceptions'] 0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'tmp/scripts/post_test_exceptions'] 0m22.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m22.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'dpkg-divert', '--list'] 0m22.6s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'dpkg-divert', '--list'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', 'clean'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy', 'apt-get', 'clean'] 0m22.7s DEBUG: Recording chroot state 0m23.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/shm'] 0m23.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/shm'] 0m23.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/console'] 0m23.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/console'] 0m23.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/ptmx'] 0m23.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/ptmx'] 0m23.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/pts'] 0m23.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/dev/pts'] 0m23.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/proc'] 0m23.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy/proc'] 0m23.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m23.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpa9f30xwy'] 0m23.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpa9f30xwy 0m23.7s INFO: PASS: Upgrading between Debian distributions. 0m23.7s INFO: PASS: All tests. 0m23.7s INFO: piuparts run ends. ret=0 End: 2024-10-21 03:46:35 GMT