Start: 2021-09-17 18:13:30 GMT [testing] Package: shapeit4-example Source: shapeit4 Version: 4.2.1+dfsg-1 Installed-Size: 51086 Maintainer: Debian Med Packaging Team Architecture: all Enhances: shapeit4 Description: fast and accurate method for estimation of haplotypes (phasing) - example Multi-Arch: foreign Homepage: https://odelaneau.github.io/shapeit4/ Description-md5: b72cdf3f91219a37d1a9a5b6e41e5852 Section: doc Priority: optional Filename: pool/main/s/shapeit4/shapeit4-example_4.2.1+dfsg-1_all.deb Size: 52265200 MD5sum: 14f32392d45c6c8e7d91e3c5057c6516 SHA256: f3982cf04797c1214dd73755b2128e8c6e5a66d33a8cc16a94e4b289c67e2ae5 [sid] Package: shapeit4-example Source: shapeit4 Version: 4.2.2+dfsg-1 Installed-Size: 51086 Maintainer: Debian Med Packaging Team Architecture: all Enhances: shapeit4 Description: fast and accurate method for estimation of haplotypes (phasing) - example Multi-Arch: foreign Homepage: https://odelaneau.github.io/shapeit4/ Description-md5: b72cdf3f91219a37d1a9a5b6e41e5852 Section: doc Priority: optional Filename: pool/main/s/shapeit4/shapeit4-example_4.2.2+dfsg-1_all.deb Size: 52265188 MD5sum: ef6a772ea273aa3930306fc6dee56b5e SHA256: bebc6d5e77a326256e936e85078493c623cb2786570449dd3377c506c7d1b26f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt shapeit4-example=4.2.2+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt shapeit4-example=4.2.2+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpw09keo7t 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpw09keo7t 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpw09keo7t/tmp/scripts/ 0m2.2s INFO: Running scripts post_chroot_unpack 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', 'update'] 0m4.7s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [128 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8296 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5688 kB] Fetched 14.1 MB in 2s (7146 kB/s) Reading package lists... 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', 'update'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', '-yf', 'dist-upgrade'] 0m5.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', '-yf', 'dist-upgrade'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.4s DUMP: d18c0003cc11630d2ba1109d3068d12d - 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.4s INFO: Running scripts post_setup 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_setup_dummy_users'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_setup_dummy_users'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_setup_forbid_home'] 0m6.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_setup_forbid_home'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_setup_minimize'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_setup_minimize'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_setup_zz_backports'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_setup_zz_backports'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.0s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.9 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-3+b1 install ok installed bsdutils bsdutils 1:2.37.2-1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20210120+802ebd4-1 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-9 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-4 install ok installed gcc-9-base:amd64 gcc-9-base 9.4.0-2 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.9 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.5-1 install ok installed libblkid1:amd64 libblkid1 2.37.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-17 install ok installed libc6:amd64 libc6 2.31-17 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.25-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-4 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.42-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-2 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-10 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-10 install ok installed libpam-runtime libpam-runtime 1.4.0-10 install ok installed libpam0g:amd64 libpam0g 1.4.0-10 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-1 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1l-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 247.9-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.17.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-4 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 247.9-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-1 install ok installed ncurses-base ncurses-base 6.2+20201114-4 install ok installed ncurses-bin ncurses-bin 6.2+20201114-4 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-5 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1 install ok installed util-linux util-linux 2.37.2-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m6.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m6.4s INFO: Running scripts is_testable 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/is_testable_uninstallable'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/is_testable_uninstallable'] 0m6.4s INFO: Running scripts pre_test 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_test_exceptions'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_test_exceptions'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_test_root_password'] 0m6.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_test_root_password'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'show', '--no-all-versions', 'shapeit4-example'] 0m6.6s DUMP: Package: shapeit4-example Source: shapeit4 Version: 4.2.1+dfsg-1 Installed-Size: 51086 Maintainer: Debian Med Packaging Team Architecture: all Enhances: shapeit4 Description-en: fast and accurate method for estimation of haplotypes (phasing) - example Segmented HAPlotype Estimation and Imputation Tools version 4 (SHAPEIT4). SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and sequencing data. . This package provides example data to work with SHAPEIT4. Description-md5: b72cdf3f91219a37d1a9a5b6e41e5852 Multi-Arch: foreign Homepage: https://odelaneau.github.io/shapeit4/ Section: doc Priority: optional Filename: pool/main/s/shapeit4/shapeit4-example_4.2.1+dfsg-1_all.deb Size: 52265200 MD5sum: 14f32392d45c6c8e7d91e3c5057c6516 SHA256: f3982cf04797c1214dd73755b2128e8c6e5a66d33a8cc16a94e4b289c67e2ae5 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'show', '--no-all-versions', 'shapeit4-example'] 0m6.6s INFO: apt-cache knows about the following packages: shapeit4-example 0m6.6s INFO: Running scripts pre_install 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_database-server'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_database-server'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_exceptions'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_exceptions'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_extras'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_extras'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'policy'] 0m6.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'policy'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'policy', 'shapeit4-example'] 0m6.7s DUMP: shapeit4-example: Installed: (none) Candidate: 4.2.1+dfsg-1 Version table: 4.2.1+dfsg-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'policy', 'shapeit4-example'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', '-y', 'install', 'shapeit4-example'] 0m8.1s DUMP: Reading package lists... Building dependency tree... The following NEW packages will be installed: shapeit4-example 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 52.3 MB of archives. After this operation, 52.3 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 shapeit4-example all 4.2.1+dfsg-1 [52.3 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 52.3 MB in 0s (136 MB/s) Selecting previously unselected package shapeit4-example. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6665 files and directories currently installed.) Preparing to unpack .../shapeit4-example_4.2.1+dfsg-1_all.deb ... Unpacking shapeit4-example (4.2.1+dfsg-1) ... Setting up shapeit4-example (4.2.1+dfsg-1) ... 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', '-y', 'install', 'shapeit4-example'] 0m8.1s INFO: Running scripts post_install 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_install_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_install_exceptions'] 0m8.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m8.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m8.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpw09keo7t to sid 0m8.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m8.6s INFO: Running scripts pre_distupgrade 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', 'update'] 0m12.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8772 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6556 kB] Fetched 15.5 MB in 3s (5662 kB/s) Reading package lists... 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', 'update'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', '-yf', 'dist-upgrade'] 0m25.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bsdutils debianutils gcc-10-base gcc-11-base gcc-9-base libblkid1 libc-bin libc6 libgcc-s1 libgcrypt20 libgmp10 libmount1 libseccomp2 libsmartcols1 libstdc++6 libtinfo6 libuuid1 mount ncurses-base ncurses-bin shapeit4-example util-linux 22 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 61.8 MB of archives. After this operation, 79.9 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.37.2-2 [150 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.4-4 [93.5 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.32-3 [2817 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.32-3 [821 kB] Get:5 http://deb.debian.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-5 [205 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-5 [42.0 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 11.2.0-5 [575 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.2+20210905-1 [348 kB] Get:9 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.2+20210905-1 [434 kB] Get:10 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.37.2-2 [1200 kB] Get:11 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.2+20210905-1 [277 kB] Get:12 http://deb.debian.org/debian sid/main amd64 mount amd64 2.37.2-2 [190 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.37.2-2 [201 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.9.4-3 [664 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.2.1+dfsg-2 [561 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.37.2-2 [218 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.2-1 [48.3 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.37.2-2 [161 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.37.2-2 [84.5 kB] Get:20 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.3.0-10 [205 kB] Get:21 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.4.0-3 [200 kB] Get:22 http://deb.debian.org/debian sid/main amd64 shapeit4-example all 4.2.2+dfsg-1 [52.3 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 61.8 MB in 10s (6404 kB/s) (Reading database ... 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Setting up gcc-10-base:amd64 (10.3.0-10) ... Setting up shapeit4-example (4.2.2+dfsg-1) ... Setting up mount (2.37.2-2) ... Setting up gcc-9-base:amd64 (9.4.0-3) ... Processing triggers for libc-bin (2.32-3) ... 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', '-yf', 'dist-upgrade'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m26.0s DUMP: b105e93eab398c5f3a3d35a793c1e83d - 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'show', '--no-all-versions', 'shapeit4-example'] 0m26.2s DUMP: Package: shapeit4-example Source: shapeit4 Version: 4.2.2+dfsg-1 Installed-Size: 51086 Maintainer: Debian Med Packaging Team Architecture: all Enhances: shapeit4 Description-en: fast and accurate method for estimation of haplotypes (phasing) - example Segmented HAPlotype Estimation and Imputation Tools version 4 (SHAPEIT4). SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and sequencing data. . This package provides example data to work with SHAPEIT4. Description-md5: b72cdf3f91219a37d1a9a5b6e41e5852 Multi-Arch: foreign Homepage: https://odelaneau.github.io/shapeit4/ Section: doc Priority: optional Filename: pool/main/s/shapeit4/shapeit4-example_4.2.2+dfsg-1_all.deb Size: 52265188 MD5sum: ef6a772ea273aa3930306fc6dee56b5e SHA256: bebc6d5e77a326256e936e85078493c623cb2786570449dd3377c506c7d1b26f 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'show', '--no-all-versions', 'shapeit4-example'] 0m26.2s INFO: apt-cache knows about the following packages: shapeit4-example 0m26.2s INFO: Running scripts pre_install 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_database-server'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_database-server'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_exceptions'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_exceptions'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_extras'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_extras'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'policy'] 0m26.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'policy'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'policy', 'shapeit4-example'] 0m26.3s DUMP: shapeit4-example: Installed: 4.2.2+dfsg-1 Candidate: 4.2.2+dfsg-1 Version table: *** 4.2.2+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'policy', 'shapeit4-example'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', '-y', 'install', 'shapeit4-example'] 0m26.6s DUMP: Reading package lists... Building dependency tree... Reading state information... shapeit4-example is already the newest version (4.2.2+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', '-y', 'install', 'shapeit4-example'] 0m26.6s INFO: Running scripts post_install 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_install_exceptions'] 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_install_exceptions'] 0m26.6s INFO: Running scripts post_distupgrade 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_distupgrade_exceptions'] 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_distupgrade_exceptions'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_distupgrade_zz_backports'] 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_distupgrade_zz_backports'] 0m26.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m26.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m26.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m27.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m27.2s INFO: Running scripts pre_install 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_database-server'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_database-server'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_exceptions'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_exceptions'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_extras'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_extras'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'policy'] 0m27.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'policy'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'policy', 'shapeit4-example'] 0m27.3s DUMP: shapeit4-example: Installed: 4.2.2+dfsg-1 Candidate: 4.2.2+dfsg-1 Version table: *** 4.2.2+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-cache', 'policy', 'shapeit4-example'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', '-y', 'install', 'shapeit4-example=4.2.2+dfsg-1'] 0m27.8s DUMP: Reading package lists... Building dependency tree... Reading state information... shapeit4-example is already the newest version (4.2.2+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', '-y', 'install', 'shapeit4-example=4.2.2+dfsg-1'] 0m27.8s INFO: Running scripts post_install 0m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_install_exceptions'] 0m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_install_exceptions'] 0m27.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m28.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m28.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', '-ac', '--ignore-obsolete'] 0m29.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', '-ac', '--ignore-obsolete'] 0m29.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m29.5s DUMP: 0.15.2 0m29.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m29.5s INFO: Running adequate version 0.15.2 now. 0m29.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'shapeit4-example'] 0m29.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'shapeit4-example'] 0m29.6s INFO: Running scripts pre_remove 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_remove_exceptions'] 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/pre_remove_exceptions'] 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m30.2s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.9 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-3+b1 install ok installed bsdutils bsdutils 1:2.37.2-2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20210120+802ebd4-1 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.4-4 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-10 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-5 install ok installed gcc-9-base:amd64 gcc-9-base 9.4.0-3 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.9 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.5-1 install ok installed libblkid1:amd64 libblkid1 2.37.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.32-3 install ok installed libc6:amd64 libc6 2.32-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.25-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-5 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.42-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-2 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-10 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-10 install ok installed libpam-runtime libpam-runtime 1.4.0-10 install ok installed libpam0g:amd64 libpam0g 1.4.0-10 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.2-1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-2 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1l-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-5 install ok installed libsystemd0:amd64 libsystemd0 247.9-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.17.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20210905-1 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 247.9-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-2 install ok installed ncurses-base ncurses-base 6.2+20210905-1 install ok installed ncurses-bin ncurses-bin 6.2+20210905-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-5 install ok installed sed sed 4.8-1 install ok installed shapeit4-example shapeit4-example 4.2.2+dfsg-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1 install ok installed util-linux util-linux 2.37.2-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', 'remove', 'shapeit4-example'] 0m31.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: shapeit4-example 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 52.3 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6680 files and directories currently installed.) Removing shapeit4-example (4.2.2+dfsg-1) ... 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', 'remove', 'shapeit4-example'] 0m31.0s INFO: Running scripts post_remove 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_remove_exceptions'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_remove_exceptions'] 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'dpkg', '--purge', 'shapeit4-example'] 0m31.0s DUMP: dpkg: warning: ignoring request to remove shapeit4-example which isn't installed 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'dpkg', '--purge', 'shapeit4-example'] 0m31.0s INFO: Running scripts post_purge 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_purge_exceptions'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_purge_exceptions'] 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'dpkg', '--purge', '--pending'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'dpkg', '--purge', '--pending'] 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'dpkg', '--remove', '--pending'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'dpkg', '--remove', '--pending'] 0m31.0s INFO: Running scripts post_test 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_test_exceptions'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'tmp/scripts/post_test_exceptions'] 0m31.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m31.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'dpkg-divert', '--list'] 0m31.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'dpkg-divert', '--list'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', 'clean'] 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw09keo7t', 'apt-get', 'clean'] 0m31.4s DEBUG: Recording chroot state 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/shm'] 0m32.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/shm'] 0m32.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/console'] 0m32.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/console'] 0m32.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/ptmx'] 0m32.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/ptmx'] 0m32.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/pts'] 0m32.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/dev/pts'] 0m32.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/proc'] 0m32.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw09keo7t/proc'] 0m32.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m32.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpw09keo7t'] 0m32.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpw09keo7t 0m32.4s INFO: PASS: Upgrading between Debian distributions. 0m32.4s INFO: PASS: All tests. 0m32.4s INFO: piuparts run ends. ret=0 End: 2021-09-17 18:14:03 GMT