Start: 2020-12-01 21:09:54 GMT [testing] Package: sibelia Version: 3.0.7+dfsg-3 Installed-Size: 1176 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libdivsufsort3 (>= 2.0.1), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), python3, lagan Suggests: sibelia-examples Description: comparative genomics tool Homepage: http://bioinf.spbau.ru/sibelia Description-md5: a4c578f4b700f62ce2e93b7cb7dc2b0c Section: science Priority: optional Filename: pool/main/s/sibelia/sibelia_3.0.7+dfsg-3_amd64.deb Size: 317120 MD5sum: b51a24f1bacd8d839b193f061265782b SHA256: 8f1c8f90c04152f170929640a1f78695072a8ad80dbbffd7f251aa9a0509bea8 [sid] Package: sibelia Version: 3.0.7+dfsg-3 Installed-Size: 1176 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libdivsufsort3 (>= 2.0.1), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), python3, lagan Suggests: sibelia-examples Description: comparative genomics tool Homepage: http://bioinf.spbau.ru/sibelia Description-md5: a4c578f4b700f62ce2e93b7cb7dc2b0c Section: science Priority: optional Filename: pool/main/s/sibelia/sibelia_3.0.7+dfsg-3_amd64.deb Size: 317120 MD5sum: b51a24f1bacd8d839b193f061265782b SHA256: 8f1c8f90c04152f170929640a1f78695072a8ad80dbbffd7f251aa9a0509bea8 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt sibelia=3.0.7+dfsg-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.2~202004292038~1.1.1-19-g418151e2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt sibelia=3.0.7+dfsg-3 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpdt64ol54 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpdt64ol54 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/console'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/console'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/shm'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/shm'] 0m1.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpdt64ol54/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', 'update'] 0m4.8s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 Packages [7905 kB] Get:3 http://deb.debian.org/debian bullseye/main Translation-en [6039 kB] Fetched 14.1 MB in 3s (5247 kB/s) Reading package lists... 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', 'update'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', '-yf', 'dist-upgrade'] 0m6.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bash gcc-10-base gcc-9-base libgcc-s1 libstdc++6 tar 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3181 kB of archives. After this operation, 225 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 bash amd64 5.1~rc3-1 [1415 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 tar amd64 1.32+dfsg-1 [835 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 gcc-10-base amd64 10.2.0-19 [200 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libstdc++6 amd64 10.2.0-19 [492 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 libgcc-s1 amd64 10.2.0-19 [41.4 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 gcc-9-base amd64 9.3.0-19 [198 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3181 kB in 0s (10.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6675 files and directories currently installed.) Preparing to unpack .../bash_5.1~rc3-1_amd64.deb ... Unpacking bash (5.1~rc3-1) over (5.1~rc2-1) ... Setting up bash (5.1~rc3-1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6675 files and directories currently installed.) Preparing to unpack .../tar_1.32+dfsg-1_amd64.deb ... Unpacking tar (1.32+dfsg-1) over (1.30+dfsg-7) ... Setting up tar (1.32+dfsg-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6675 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10.2.0-19_amd64.deb ... Unpacking gcc-10-base:amd64 (10.2.0-19) over (10.2.0-16) ... Setting up gcc-10-base:amd64 (10.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6675 files and directories currently installed.) Preparing to unpack .../libstdc++6_10.2.0-19_amd64.deb ... Unpacking libstdc++6:amd64 (10.2.0-19) over (10.2.0-16) ... Setting up libstdc++6:amd64 (10.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6675 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10.2.0-19_amd64.deb ... Unpacking libgcc-s1:amd64 (10.2.0-19) over (10.2.0-16) ... Setting up libgcc-s1:amd64 (10.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6675 files and directories currently installed.) Preparing to unpack .../gcc-9-base_9.3.0-19_amd64.deb ... Unpacking gcc-9-base:amd64 (9.3.0-19) over (9.3.0-18) ... Setting up gcc-9-base:amd64 (9.3.0-19) ... Processing triggers for libc-bin (2.31-4) ... 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', '-yf', 'dist-upgrade'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.0s DUMP: 38b3f888793f96ba9b9609962f88d509 - 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.0s INFO: Running scripts post_setup 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_setup_dummy_users'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_setup_dummy_users'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_setup_forbid_home'] 0m7.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_setup_forbid_home'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_setup_minimize'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_setup_minimize'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_setup_zz_backports'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_setup_zz_backports'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.6s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.1.11 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.48 install ok installed bash bash 5.1~rc3-1 install ok installed bsdutils bsdutils 1:2.36.1-1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-2 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.20.5 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed findutils findutils 4.7.0+git20201010-2 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.0-19 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-19 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.59 install ok installed libacl1:amd64 libacl1 2.2.53-8 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.1.11 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3.1 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3.1 install ok installed libblkid1:amd64 libblkid1 2.36.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-4 install ok installed libc6:amd64 libc6 2.31-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.255 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libffi7:amd64 libffi7 3.3-5 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.0-19 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.6.15-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-4 install ok installed libhogweed6:amd64 libhogweed6 3.6-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-4 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.36.1-1 install ok installed libnettle8:amd64 libnettle8 3.6-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnss-nis:amd64 libnss-nis 3.1-4 install ok installed libnss-nisplus:amd64 libnss-nisplus 1.3-4 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.21-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.0-3 install ok installed libselinux1:amd64 libselinux1 3.1-2+b1 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-1 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1h-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 246.6-4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20200918-1 install ok installed libtirpc-common libtirpc-common 1.2.6-3 install ok installed libtirpc3:amd64 libtirpc3 1.2.6-3 install ok installed libudev1:amd64 libudev1 246.6-4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.5+dfsg-4 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-1 install ok installed ncurses-base ncurses-base 6.2+20200918-1 install ok installed ncurses-bin ncurses-bin 6.2+20200918-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.0-5 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-5 install ok installed tar tar 1.32+dfsg-1 install ok installed tzdata tzdata 2020d-1 install ok installed util-linux util-linux 2.36.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m8.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m8.2s INFO: Running scripts is_testable 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/is_testable_uninstallable'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/is_testable_uninstallable'] 0m8.2s INFO: Running scripts pre_test 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_test_exceptions'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_test_exceptions'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_test_root_password'] 0m8.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_test_root_password'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'show', '--no-all-versions', 'sibelia'] 0m8.5s DUMP: Package: sibelia Version: 3.0.7+dfsg-3 Installed-Size: 1176 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libdivsufsort3 (>= 2.0.1), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), python3, lagan Suggests: sibelia-examples Description-en: comparative genomics tool Sibelia (Synteny Block ExpLoration tool) is a comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms. . Sibelia is useful in finding: . 1) shared regions, 2) regions that present in one group of genomes but not in others, 3) rearrangements that transform one genome to other genomes. Description-md5: a4c578f4b700f62ce2e93b7cb7dc2b0c Homepage: http://bioinf.spbau.ru/sibelia Section: science Priority: optional Filename: pool/main/s/sibelia/sibelia_3.0.7+dfsg-3_amd64.deb Size: 317120 MD5sum: b51a24f1bacd8d839b193f061265782b SHA256: 8f1c8f90c04152f170929640a1f78695072a8ad80dbbffd7f251aa9a0509bea8 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'show', '--no-all-versions', 'sibelia'] 0m8.5s INFO: apt-cache knows about the following packages: sibelia 0m8.5s INFO: Running scripts pre_install 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_database-server'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_database-server'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_exceptions'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_exceptions'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_extras'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_extras'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'policy'] 0m8.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'policy'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'policy', 'sibelia'] 0m8.6s DUMP: sibelia: Installed: (none) Candidate: 3.0.7+dfsg-3 Version table: 3.0.7+dfsg-3 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'policy', 'sibelia'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', '-y', 'install', 'sibelia'] 0m14.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: lagan libdivsufsort3 libexpat1 libgdbm-compat4 libgdbm6 libncursesw6 libperl5.32 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libreadline8 libsqlite3-0 mailcap media-types mime-support perl perl-modules-5.32 python3 python3-minimal python3.8 python3.8-minimal readline-common Suggested packages: gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binutils binfmt-support readline-doc sibelia-examples Recommended packages: libgpm2 bzip2 file xz-utils netbase The following NEW packages will be installed: lagan libdivsufsort3 libexpat1 libgdbm-compat4 libgdbm6 libncursesw6 libperl5.32 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libreadline8 libsqlite3-0 mailcap media-types mime-support perl perl-modules-5.32 python3 python3-minimal python3.8 python3.8-minimal readline-common sibelia 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. Need to get 14.1 MB of archives. After this operation, 71.8 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.0-5 [2821 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.18.1-5.1 [64.4 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.18.1-5.1 [44.4 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.0-5 [4119 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.0-5 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libpython3.8-minimal amd64 3.8.6-1 [761 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-1 [96.9 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 python3.8-minimal amd64 3.8.6-1 [1863 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.8.6-1 [37.7 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 media-types all 1.0.1 [18.2 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.67 [31.3 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20200918-1 [132 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1~rc3-1 [73.7 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1~rc3-1 [168 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.33.0-1 [790 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libpython3.8-stdlib amd64 3.8.6-1 [1720 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 python3.8 amd64 3.8.6-1 [422 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.8.6-1 [20.9 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.8.6-1 [64.0 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 lagan amd64 2.0-6 [179 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libdivsufsort3 amd64 2.0.1-5 [44.7 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 sibelia amd64 3.0.7+dfsg-3 [317 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.1 MB in 0s (38.0 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6677 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.0-5_all.deb ... Unpacking perl-modules-5.32 (5.32.0-5) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.18.1-5.1_amd64.deb ... Unpacking libgdbm6:amd64 (1.18.1-5.1) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../2-libgdbm-compat4_1.18.1-5.1_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.18.1-5.1) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../3-libperl5.32_5.32.0-5_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.0-5) ... Selecting previously unselected package perl. Preparing to unpack .../4-perl_5.32.0-5_amd64.deb ... Unpacking perl (5.32.0-5) ... Selecting previously unselected package libpython3.8-minimal:amd64. Preparing to unpack .../5-libpython3.8-minimal_3.8.6-1_amd64.deb ... Unpacking libpython3.8-minimal:amd64 (3.8.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../6-libexpat1_2.2.10-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../7-python3.8-minimal_3.8.6-1_amd64.deb ... Unpacking python3.8-minimal (3.8.6-1) ... Setting up libpython3.8-minimal:amd64 (3.8.6-1) ... Setting up libexpat1:amd64 (2.2.10-1) ... Setting up python3.8-minimal (3.8.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8940 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.8.6-1_amd64.deb ... Unpacking python3-minimal (3.8.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_1.0.1_all.deb ... Unpacking media-types (1.0.1) ... Selecting previously unselected package mailcap. Preparing to unpack .../02-mailcap_3.67_all.deb ... Unpacking mailcap (3.67) ... Selecting previously unselected package mime-support. Preparing to unpack .../03-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.2+20200918-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20200918-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.1~rc3-1_all.deb ... Unpacking readline-common (8.1~rc3-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../06-libreadline8_8.1~rc3-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1~rc3-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.33.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.33.0-1) ... Selecting previously unselected package libpython3.8-stdlib:amd64. Preparing to unpack .../08-libpython3.8-stdlib_3.8.6-1_amd64.deb ... Unpacking libpython3.8-stdlib:amd64 (3.8.6-1) ... Selecting previously unselected package python3.8. Preparing to unpack .../09-python3.8_3.8.6-1_amd64.deb ... Unpacking python3.8 (3.8.6-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../10-libpython3-stdlib_3.8.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.8.6-1) ... Setting up python3-minimal (3.8.6-1) ... Selecting previously unselected package python3. (Reading database ... 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Selecting previously unselected package sibelia. Preparing to unpack .../sibelia_3.0.7+dfsg-3_amd64.deb ... Unpacking sibelia (3.0.7+dfsg-3) ... Setting up media-types (1.0.1) ... Setting up perl-modules-5.32 (5.32.0-5) ... Setting up libsqlite3-0:amd64 (3.33.0-1) ... Setting up lagan (2.0-6) ... Setting up libncursesw6:amd64 (6.2+20200918-1) ... Setting up libdivsufsort3:amd64 (2.0.1-5) ... Setting up readline-common (8.1~rc3-1) ... Setting up libgdbm6:amd64 (1.18.1-5.1) ... Setting up libreadline8:amd64 (8.1~rc3-1) ... Setting up libgdbm-compat4:amd64 (1.18.1-5.1) ... Setting up libperl5.32:amd64 (5.32.0-5) ... Setting up perl (5.32.0-5) ... Setting up mailcap (3.67) ... Setting up mime-support (3.66) ... Setting up libpython3.8-stdlib:amd64 (3.8.6-1) ... Setting up python3.8 (3.8.6-1) ... Setting up libpython3-stdlib:amd64 (3.8.6-1) ... Setting up python3 (3.8.6-1) ... Setting up sibelia (3.0.7+dfsg-3) ... Processing triggers for libc-bin (2.31-4) ... 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', '-y', 'install', 'sibelia'] 0m14.2s INFO: Running scripts post_install 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_install_exceptions'] 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_install_exceptions'] 0m14.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m14.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m14.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpdt64ol54 to sid 0m14.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m14.9s INFO: Running scripts pre_distupgrade 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', 'update'] 0m18.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [146 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8529 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6417 kB] Fetched 15.1 MB in 3s (4891 kB/s) Reading package lists... 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', 'update'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', '-yf', 'dist-upgrade'] 0m24.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libpython3.8-minimal libpython3.8-stdlib python3.8 python3.8-minimal Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libpython3.9-minimal libpython3.9-stdlib python3.9 python3.9-minimal The following packages will be upgraded: apt bsdutils libapt-pkg6.0 libblkid1 libc-bin libc6 libcap-ng0 libmount1 libncursesw6 libpython3-stdlib libsmartcols1 libsystemd0 libtinfo6 libudev1 libuuid1 mount ncurses-base ncurses-bin python3 python3-minimal util-linux 21 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 15.0 MB of archives. After this operation, 19.6 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.36.1-2 [148 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.2+20201114-1 [428 kB] Get:3 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.36.1-2 [1139 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.31-5 [2806 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 246.6-5 [370 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 246.6-5 [163 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.1.12 [995 kB] Get:8 http://deb.debian.org/debian sid/main amd64 apt amd64 2.1.12 [1468 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.31-5 [811 kB] Get:10 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.2+20201114-1 [271 kB] Get:11 http://deb.debian.org/debian sid/main amd64 mount amd64 2.36.1-2 [184 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.9-minimal amd64 3.9.1~rc1-2 [799 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.9-minimal amd64 3.9.1~rc1-2 [1955 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.9.0-3 [37.8 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.9.0-3 [64.0 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.2+20201114-1 [133 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.2+20201114-1 [341 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.36.1-2 [82.7 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libpython3.9-stdlib amd64 3.9.1~rc1-2 [1751 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3.9 amd64 3.9.1~rc1-2 [460 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.9.0-3 [21.0 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.36.1-2 [192 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.7.9-2.2+b1 [14.8 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.36.1-2 [210 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.36.1-2 [156 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.0 MB in 0s (43.1 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9514 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.2+20201114-1_amd64.deb ... Unpacking ncurses-bin (6.2+20201114-1) over (6.2+20200918-1) ... Setting up ncurses-bin (6.2+20201114-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9514 files and directories currently installed.) Preparing to unpack .../util-linux_2.36.1-2_amd64.deb ... Unpacking util-linux (2.36.1-2) over (2.36.1-1) ... Setting up util-linux (2.36.1-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9514 files and directories currently installed.) Preparing to unpack .../libudev1_246.6-5_amd64.deb ... Unpacking libudev1:amd64 (246.6-5) over (246.6-4) ... Setting up libudev1:amd64 (246.6-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9514 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.1.12_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.1.12) over (2.1.11) ... Setting up libapt-pkg6.0:amd64 (2.1.12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9514 files and directories currently installed.) Preparing to unpack .../archives/apt_2.1.12_amd64.deb ... Unpacking apt (2.1.12) over (2.1.11) ... Setting up apt (2.1.12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9520 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-5_amd64.deb ... Unpacking libc-bin (2.31-5) over (2.31-4) ... Setting up libc-bin (2.31-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9520 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2+20201114-1_all.deb ... Unpacking ncurses-base (6.2+20201114-1) over (6.2+20200918-1) ... Setting up ncurses-base (6.2+20201114-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9520 files and directories currently installed.) Preparing to unpack .../mount_2.36.1-2_amd64.deb ... Unpacking mount (2.36.1-2) over (2.36.1-1) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../libpython3.9-minimal_3.9.1~rc1-2_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.1~rc1-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.1~rc1-2_amd64.deb ... Unpacking python3.9-minimal (3.9.1~rc1-2) ... Setting up libpython3.9-minimal:amd64 (3.9.1~rc1-2) ... Setting up python3.9-minimal (3.9.1~rc1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9804 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.9.0-3_amd64.deb ... Unpacking python3-minimal (3.9.0-3) over (3.8.6-1) ... Setting up python3-minimal (3.9.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9804 files and directories currently installed.) Preparing to unpack .../python3_3.9.0-3_amd64.deb ... Unpacking python3 (3.9.0-3) over (3.8.6-1) ... Preparing to unpack .../libncursesw6_6.2+20201114-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20201114-1) over (6.2+20200918-1) ... Preparing to unpack .../libtinfo6_6.2+20201114-1_amd64.deb ... Unpacking libtinfo6:amd64 (6.2+20201114-1) over (6.2+20200918-1) ... Setting up libtinfo6:amd64 (6.2+20201114-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9805 files and directories currently installed.) Preparing to unpack .../libuuid1_2.36.1-2_amd64.deb ... Unpacking libuuid1:amd64 (2.36.1-2) over (2.36.1-1) ... Setting up libuuid1:amd64 (2.36.1-2) ... Selecting previously unselected package libpython3.9-stdlib:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9805 files and directories currently installed.) Preparing to unpack .../libpython3.9-stdlib_3.9.1~rc1-2_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.1~rc1-2) ... Selecting previously unselected package python3.9. Preparing to unpack .../python3.9_3.9.1~rc1-2_amd64.deb ... Unpacking python3.9 (3.9.1~rc1-2) ... Preparing to unpack .../libpython3-stdlib_3.9.0-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.0-3) over (3.8.6-1) ... Preparing to unpack .../libblkid1_2.36.1-2_amd64.deb ... Unpacking libblkid1:amd64 (2.36.1-2) over (2.36.1-1) ... Setting up libblkid1:amd64 (2.36.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10159 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-2.2+b1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.9-2.2+b1) over (0.7.9-2.2) ... Setting up libcap-ng0:amd64 (0.7.9-2.2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10160 files and directories currently installed.) Preparing to unpack .../libmount1_2.36.1-2_amd64.deb ... Unpacking libmount1:amd64 (2.36.1-2) over (2.36.1-1) ... Setting up libmount1:amd64 (2.36.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10160 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.36.1-2_amd64.deb ... Unpacking libsmartcols1:amd64 (2.36.1-2) over (2.36.1-1) ... Setting up libsmartcols1:amd64 (2.36.1-2) ... Setting up libncursesw6:amd64 (6.2+20201114-1) ... Setting up mount (2.36.1-2) ... Setting up libpython3.9-stdlib:amd64 (3.9.1~rc1-2) ... Setting up libpython3-stdlib:amd64 (3.9.0-3) ... Setting up python3.9 (3.9.1~rc1-2) ... Setting up python3 (3.9.0-3) ... Processing triggers for libc-bin (2.31-5) ... Processing triggers for mailcap (3.67) ... 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', '-yf', 'dist-upgrade'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m25.8s DUMP: cefb26e9267eb0fd704d6962c77120ca - 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'show', '--no-all-versions', 'sibelia'] 0m26.0s DUMP: Package: sibelia Version: 3.0.7+dfsg-3 Installed-Size: 1176 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libdivsufsort3 (>= 2.0.1), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), python3, lagan Suggests: sibelia-examples Description-en: comparative genomics tool Sibelia (Synteny Block ExpLoration tool) is a comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms. . Sibelia is useful in finding: . 1) shared regions, 2) regions that present in one group of genomes but not in others, 3) rearrangements that transform one genome to other genomes. Description-md5: a4c578f4b700f62ce2e93b7cb7dc2b0c Homepage: http://bioinf.spbau.ru/sibelia Section: science Priority: optional Filename: pool/main/s/sibelia/sibelia_3.0.7+dfsg-3_amd64.deb Size: 317120 MD5sum: b51a24f1bacd8d839b193f061265782b SHA256: 8f1c8f90c04152f170929640a1f78695072a8ad80dbbffd7f251aa9a0509bea8 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'show', '--no-all-versions', 'sibelia'] 0m26.0s INFO: apt-cache knows about the following packages: sibelia 0m26.0s INFO: Running scripts pre_install 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_database-server'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_database-server'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_exceptions'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_exceptions'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_extras'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_extras'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'policy'] 0m26.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'policy'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'policy', 'sibelia'] 0m26.2s DUMP: sibelia: Installed: 3.0.7+dfsg-3 Candidate: 3.0.7+dfsg-3 Version table: *** 3.0.7+dfsg-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'policy', 'sibelia'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', '-y', 'install', 'sibelia'] 0m26.6s DUMP: Reading package lists... Building dependency tree... Reading state information... sibelia is already the newest version (3.0.7+dfsg-3). The following packages were automatically installed and are no longer required: libpython3.8-minimal libpython3.8-stdlib python3.8 python3.8-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', '-y', 'install', 'sibelia'] 0m26.6s INFO: Running scripts post_install 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_install_exceptions'] 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_install_exceptions'] 0m26.6s INFO: Running scripts post_distupgrade 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_distupgrade_exceptions'] 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_distupgrade_exceptions'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_distupgrade_zz_backports'] 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_distupgrade_zz_backports'] 0m26.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m27.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m27.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m27.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m27.9s INFO: Running scripts pre_install 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_database-server'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_database-server'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_exceptions'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_exceptions'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_extras'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_extras'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'policy'] 0m27.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'policy'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'policy', 'sibelia'] 0m28.0s DUMP: sibelia: Installed: 3.0.7+dfsg-3 Candidate: 3.0.7+dfsg-3 Version table: *** 3.0.7+dfsg-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-cache', 'policy', 'sibelia'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', '-y', 'install', 'sibelia=3.0.7+dfsg-3'] 0m28.5s DUMP: Reading package lists... Building dependency tree... Reading state information... sibelia is already the newest version (3.0.7+dfsg-3). The following packages were automatically installed and are no longer required: libpython3.8-minimal libpython3.8-stdlib python3.8 python3.8-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', '-y', 'install', 'sibelia=3.0.7+dfsg-3'] 0m28.5s INFO: Running scripts post_install 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_install_exceptions'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_install_exceptions'] 0m28.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m28.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m29.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', '-ac', '--ignore-obsolete'] 0m30.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', '-ac', '--ignore-obsolete'] 0m30.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m30.2s DUMP: 0.15.2 0m30.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m30.2s INFO: Running adequate version 0.15.2 now. 0m30.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'sibelia'] 0m30.3s DUMP: sibelia: py-file-not-bytecompiled /usr/share/Sibelia/utils/hidemappedcontigs.py sibelia: py-file-not-bytecompiled /usr/share/Sibelia/utils/sortsequences.py 0m30.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'sibelia'] 0m30.3s ERROR: WARN: Inadequate results from running adequate! sibelia: py-file-not-bytecompiled /usr/share/Sibelia/utils/hidemappedcontigs.py sibelia: py-file-not-bytecompiled /usr/share/Sibelia/utils/sortsequences.py 0m30.3s ERROR: WARN: Running adequate resulted in inadequate tags found: py-file-not-bytecompiled 0m30.3s INFO: Running scripts pre_remove 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_remove_exceptions'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/pre_remove_exceptions'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m31.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.1.12 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.48 install ok installed bash bash 5.1~rc3-1 install ok installed bsdutils bsdutils 1:2.36.1-2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-2 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.20.5 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed findutils findutils 4.7.0+git20201010-2 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.0-19 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-19 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.59 install ok installed lagan lagan 2.0-6 install ok installed libacl1:amd64 libacl1 2.2.53-8 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.1.12 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3.1 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3.1 install ok installed libblkid1:amd64 libblkid1 2.36.1-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-5 install ok installed libc6:amd64 libc6 2.31-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.255 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-5 install ok installed libexpat1:amd64 libexpat1 2.2.10-1 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libffi7:amd64 libffi7 3.3-5 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.0-19 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-5.1 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-5.1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.6.15-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-4 install ok installed libhogweed6:amd64 libhogweed6 3.6-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-4 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.36.1-2 install ok installed libncursesw6:amd64 libncursesw6 6.2+20201114-1 install ok installed libnettle8:amd64 libnettle8 3.6-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnss-nis:amd64 libnss-nis 3.1-4 install ok installed libnss-nisplus:amd64 libnss-nisplus 1.3-4 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.21-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.0-5 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.0-3 install ok installed libpython3.8-minimal:amd64 libpython3.8-minimal 3.8.6-1 install ok installed libpython3.8-stdlib:amd64 libpython3.8-stdlib 3.8.6-1 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.1~rc1-2 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.1~rc1-2 install ok installed libreadline8:amd64 libreadline8 8.1~rc3-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.0-3 install ok installed libselinux1:amd64 libselinux1 3.1-2+b1 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.33.0-1 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1h-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 246.6-5 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-1 install ok installed libtirpc-common libtirpc-common 1.2.6-3 install ok installed libtirpc3:amd64 libtirpc3 1.2.6-3 install ok installed libudev1:amd64 libudev1 246.6-5 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-2 install ok installed libzstd1:amd64 libzstd1 1.4.5+dfsg-4 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mailcap mailcap 3.67 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 1.0.1 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.36.1-2 install ok installed ncurses-base ncurses-base 6.2+20201114-1 install ok installed ncurses-bin ncurses-bin 6.2+20201114-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.0-5 install ok installed perl-base perl-base 5.32.0-5 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.0-5 install ok installed python3 python3 3.9.0-3 install ok installed python3-minimal python3-minimal 3.9.0-3 install ok installed python3.8 python3.8 3.8.6-1 install ok installed python3.8-minimal python3.8-minimal 3.8.6-1 install ok installed python3.9 python3.9 3.9.1~rc1-2 install ok installed python3.9-minimal python3.9-minimal 3.9.1~rc1-2 install ok installed readline-common readline-common 8.1~rc3-1 install ok installed sed sed 4.7-1 install ok installed sibelia sibelia 3.0.7+dfsg-3 install ok installed sysvinit-utils sysvinit-utils 2.96-5 install ok installed tar tar 1.32+dfsg-1 install ok installed tzdata tzdata 2020d-1 install ok installed util-linux util-linux 2.36.1-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', 'remove', 'lagan', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libncursesw6:amd64', 'libperl5.32:amd64', 'libpython3-stdlib:amd64', 'libpython3.8-minimal:amd64', 'libpython3.8-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'mailcap', 'media-types', 'mime-support', 'perl', 'perl-modules-5.32', 'python3', 'python3-minimal', 'python3.8', 'python3.8-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'sibelia'] 0m32.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: lagan libdivsufsort3 libexpat1 libgdbm-compat4 libgdbm6 libncursesw6 libperl5.32 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 libsqlite3-0 mailcap media-types mime-support perl perl-modules-5.32 python3 python3-minimal python3.8 python3.8-minimal python3.9 python3.9-minimal readline-common sibelia 0 upgraded, 0 newly installed, 27 to remove and 0 not upgraded. After this operation, 91.2 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10160 files and directories currently installed.) Removing sibelia (3.0.7+dfsg-3) ... Removing lagan (2.0-6) ... Removing libdivsufsort3:amd64 (2.0.1-5) ... Removing python3 (3.9.0-3) ... Removing python3.9 (3.9.1~rc1-2) ... Removing python3-minimal (3.9.0-3) ... Removing python3.9-minimal (3.9.1~rc1-2) ... Removing python3.8 (3.8.6-1) ... Removing python3.8-minimal (3.8.6-1) ... Removing libexpat1:amd64 (2.2.10-1) ... Removing libpython3-stdlib:amd64 (3.9.0-3) ... Removing libpython3.9-stdlib:amd64 (3.9.1~rc1-2) ... find: '/usr/lib/python3': No such file or directory Removing libpython3.8-stdlib:amd64 (3.8.6-1) ... find: '/usr/lib/python3': No such file or directory Removing mime-support (3.66) ... Removing mailcap (3.67) ... Removing perl (5.32.0-5) ... Removing libperl5.32:amd64 (5.32.0-5) ... Removing libgdbm-compat4:amd64 (1.18.1-5.1) ... Removing libgdbm6:amd64 (1.18.1-5.1) ... Removing libncursesw6:amd64 (6.2+20201114-1) ... Removing libpython3.8-minimal:amd64 (3.8.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libpython3.9-minimal:amd64 (3.9.1~rc1-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.1~rc3-1) ... Removing libsqlite3-0:amd64 (3.33.0-1) ... Removing media-types (1.0.1) ... Removing perl-modules-5.32 (5.32.0-5) ... Removing readline-common (8.1~rc3-1) ... Processing triggers for libc-bin (2.31-5) ... 0m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', 'remove', 'lagan', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libncursesw6:amd64', 'libperl5.32:amd64', 'libpython3-stdlib:amd64', 'libpython3.8-minimal:amd64', 'libpython3.8-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'mailcap', 'media-types', 'mime-support', 'perl', 'perl-modules-5.32', 'python3', 'python3-minimal', 'python3.8', 'python3.8-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'sibelia'] 0m32.6s INFO: Running scripts post_remove 0m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_remove_exceptions'] 0m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_remove_exceptions'] 0m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg', '--purge', 'lagan', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libncursesw6:amd64', 'libperl5.32:amd64', 'libpython3-stdlib:amd64', 'libpython3.8-minimal:amd64', 'libpython3.8-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'mailcap', 'media-types', 'mime-support', 'perl', 'perl-modules-5.32', 'python3', 'python3-minimal', 'python3.8', 'python3.8-minimal', 'python3.9', 'python3.9-minimal', 'readline-common'] 0m32.7s DUMP: dpkg: warning: ignoring request to remove lagan which isn't installed dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed (Reading database ... 6693 files and directories currently installed.) Purging configuration files for libpython3.8-minimal:amd64 (3.8.6-1) ... dpkg: warning: ignoring request to remove libpython3.8-stdlib which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.1~rc1-2) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for mailcap (3.67) ... Purging configuration files for media-types (1.0.1) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for perl (5.32.0-5) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed Purging configuration files for python3 (3.9.0-3) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.8 which isn't installed Purging configuration files for python3.8-minimal (3.8.6-1) ... dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.1~rc1-2) ... Purging configuration files for readline-common (8.1~rc3-1) ... 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg', '--purge', 'lagan', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libncursesw6:amd64', 'libperl5.32:amd64', 'libpython3-stdlib:amd64', 'libpython3.8-minimal:amd64', 'libpython3.8-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'mailcap', 'media-types', 'mime-support', 'perl', 'perl-modules-5.32', 'python3', 'python3-minimal', 'python3.8', 'python3.8-minimal', 'python3.9', 'python3.9-minimal', 'readline-common'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg', '--purge', 'sibelia'] 0m32.7s DUMP: dpkg: warning: ignoring request to remove sibelia which isn't installed 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg', '--purge', 'sibelia'] 0m32.7s INFO: Running scripts post_purge 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_purge_exceptions'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_purge_exceptions'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg', '--purge', '--pending'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg', '--purge', '--pending'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg', '--remove', '--pending'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg', '--remove', '--pending'] 0m32.8s INFO: Running scripts post_test 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_test_exceptions'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'tmp/scripts/post_test_exceptions'] 0m32.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m33.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg-divert', '--list'] 0m33.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'dpkg-divert', '--list'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', 'clean'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdt64ol54', 'apt-get', 'clean'] 0m33.2s DEBUG: Recording chroot state 0m34.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/shm'] 0m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/shm'] 0m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/console'] 0m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/console'] 0m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/ptmx'] 0m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/ptmx'] 0m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/pts'] 0m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/dev/pts'] 0m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/proc'] 0m34.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdt64ol54/proc'] 0m34.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m34.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpdt64ol54'] 0m34.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpdt64ol54 0m34.4s INFO: PASS: Upgrading between Debian distributions. 0m34.4s INFO: PASS: All tests. 0m34.4s INFO: piuparts run ends. ret=0 End: 2020-12-01 21:10:29 GMT