Start: 2022-07-23 22:33:43 GMT [testing] Package: smrtanalysis Version: 0~20210112 Installed-Size: 9 Maintainer: Debian Med Packaging Team Architecture: all Depends: pbbamtools, blasr, pbdagcon Suggests: pbh5tools, pbbarcode, pbalign, pbgenomicconsensus, kineticstools, falcon Description: software suite for single molecule, real-time sequencing Homepage: https://www.pacb.com/products-and-services/analytical-software/smrt-analysis/ Description-md5: 07f41ceb2de8cc7b1a670a30f40ef08a Section: science Priority: optional Filename: pool/main/s/smrtanalysis/smrtanalysis_0~20210112_all.deb Size: 3136 MD5sum: 4d9c8ea0d8b25fe172c84fa7246bf4d0 SHA256: cb25ec016078e29241a96d60e584290011d21f125431ddba64c30f624e47499f [sid] Package: smrtanalysis Version: 0~20210112 Installed-Size: 9 Maintainer: Debian Med Packaging Team Architecture: all Depends: pbbamtools, blasr, pbdagcon Suggests: pbh5tools, pbbarcode, pbalign, pbgenomicconsensus, kineticstools, falcon Description: software suite for single molecule, real-time sequencing Homepage: https://www.pacb.com/products-and-services/analytical-software/smrt-analysis/ Description-md5: 07f41ceb2de8cc7b1a670a30f40ef08a Section: science Priority: optional Filename: pool/main/s/smrtanalysis/smrtanalysis_0~20210112_all.deb Size: 3136 MD5sum: 4d9c8ea0d8b25fe172c84fa7246bf4d0 SHA256: cb25ec016078e29241a96d60e584290011d21f125431ddba64c30f624e47499f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt 'smrtanalysis=0~20210112' 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt 'smrtanalysis=0~20210112' 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-21-amd64 #1 SMP Debian 4.19.249-2 (2022-06-30) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpywfi2u0f 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpywfi2u0f 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/ptmx'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/ptmx'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpywfi2u0f/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', 'update'] 0m3.8s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [157 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8494 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5781 kB] Fetched 14.4 MB in 2s (8787 kB/s) Reading package lists... 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', 'update'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3690 kB of archives. After this operation, 2048 B disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.33-8 [2845 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.33-8 [844 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3690 kB in 0s (50.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6645 files and directories currently installed.) Preparing to unpack .../libc6_2.33-8_amd64.deb ... Unpacking libc6:amd64 (2.33-8) over (2.33-7) ... Setting up libc6:amd64 (2.33-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6645 files and directories currently installed.) Preparing to unpack .../libc-bin_2.33-8_amd64.deb ... Unpacking libc-bin (2.33-8) over (2.33-7) ... Setting up libc-bin (2.33-8) ... 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.8s DUMP: bec983f4424b7b740e3573b1e9c054f6 - 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.8s INFO: Running scripts post_setup 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_setup_dummy_users'] 0m7.9s DUMP: useradd warning: dummy1000's uid 1000 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1001's uid 1001 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1002's uid 1002 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1003's uid 1003 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1004's uid 1004 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1005's uid 1005 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1006's uid 1006 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1007's uid 1007 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1008's uid 1008 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1009's uid 1009 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1010's uid 1010 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_setup_dummy_users'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_setup_forbid_home'] 0m7.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_setup_forbid_home'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_setup_minimize'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_setup_minimize'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_setup_zz_backports'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_setup_zz_backports'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.0s DUMP: install ok installed adduser adduser 3.121 install ok installed apt apt 2.5.1 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6.1 install ok installed bsdutils bsdutils 1:2.38-4 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.1.0-5 install ok installed gpgv gpgv 2.2.35-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.64 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblkid1:amd64 libblkid1 2.38-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-8 install ok installed libc6:amd64 libc6 2.33-8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.263 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12.1.0-5 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38-4 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-13 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-13 install ok installed libpam-runtime libpam-runtime 1.4.0-13 install ok installed libpam0g:amd64 libpam0g 1.4.0-13 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1 install ok installed libselinux1:amd64 libselinux1 3.4-1 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38-4 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libstdc++6:amd64 libstdc++6 12.1.0-5 install ok installed libsystemd0:amd64 libsystemd0 251.2-7 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.2-7 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-5 install ok installed sed sed 4.8-1 install ok installed sgml-base sgml-base 1.30 install ok installed sysvinit-utils sysvinit-utils 3.03-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022a-1 install ok installed util-linux util-linux 2.38-4 install ok installed util-linux-extra util-linux-extra 2.38-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m8.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m8.5s INFO: Running scripts is_testable 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/is_testable_uninstallable'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/is_testable_uninstallable'] 0m8.5s INFO: Running scripts pre_test 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_test_exceptions'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_test_exceptions'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_test_root_password'] 0m8.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_test_root_password'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'show', '--no-all-versions', 'smrtanalysis'] 0m8.7s DUMP: Package: smrtanalysis Version: 0~20210112 Installed-Size: 9 Maintainer: Debian Med Packaging Team Architecture: all Depends: pbbamtools, blasr, pbdagcon Suggests: pbh5tools, pbbarcode, pbalign, pbgenomicconsensus, kineticstools, falcon Description-en: software suite for single molecule, real-time sequencing SMRT? Analysis is a powerful, open-source bioinformatics software suite available for analysis of DNA sequencing data from Pacific Biosciences?? SMRT technology. Users can choose from a variety of analysis protocols that utilize PacBio? and third-party tools. Analysis protocols include de novo genome assembly, cDNA mapping, DNA base-modification detection, and long-amplicon analysis to determine phased consensus sequences. . This is a metapackage that depends on the components of SMRT Analysis. Description-md5: 07f41ceb2de8cc7b1a670a30f40ef08a Homepage: https://www.pacb.com/products-and-services/analytical-software/smrt-analysis/ Section: science Priority: optional Filename: pool/main/s/smrtanalysis/smrtanalysis_0~20210112_all.deb Size: 3136 MD5sum: 4d9c8ea0d8b25fe172c84fa7246bf4d0 SHA256: cb25ec016078e29241a96d60e584290011d21f125431ddba64c30f624e47499f 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'show', '--no-all-versions', 'smrtanalysis'] 0m8.7s INFO: apt-cache knows about the following packages: smrtanalysis 0m8.7s INFO: Running scripts pre_install 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'policy'] 0m8.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'policy'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'policy', 'smrtanalysis'] 0m8.9s DUMP: smrtanalysis: Installed: (none) Candidate: 0~20210112 Version table: 0~20210112 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'policy', 'smrtanalysis'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', '-y', 'install', 'smrtanalysis'] 0m10.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: blasr libaec0 libblasr5.3.5 libbrotli1 libcurl3-gnutls libcurl4 libdeflate0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-cpp-103-1 libhts3 libhtscodecs2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 libnghttp2-14 libpbbam2.0.0 libpbcopper2.0.0 libpbseq libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl3 libsz2 pbbamtools pbdagcon Suggested packages: krb5-doc krb5-user pbh5tools pbbarcode pbalign pbgenomicconsensus kineticstools falcon Recommended packages: ca-certificates krb5-locales libldap-common publicsuffix libsasl2-modules samtools The following NEW packages will be installed: blasr libaec0 libblasr5.3.5 libbrotli1 libcurl3-gnutls libcurl4 libdeflate0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-cpp-103-1 libhts3 libhtscodecs2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 libnghttp2-14 libpbbam2.0.0 libpbcopper2.0.0 libpbseq libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl3 libsz2 pbbamtools pbdagcon smrtanalysis 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 9507 kB of archives. After this operation, 28.9 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b3 [276 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.19.2-2+b2 [65.9 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.19.2-2+b2 [114 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-1 [15.7 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.4-2 [2034 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.19.2-2+b2 [363 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.19.2-2+b2 [166 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-6 [38.4 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-6 [77.3 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.12+dfsg-2 [227 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.47.0-1+b1 [76.3 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.84.0-2 [360 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1 [20.3 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1 [7492 B] Get:18 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.7+repack-4+b1 [1236 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libhdf5-cpp-103-1 amd64 1.10.7+repack-4+b1 [145 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.84.0-2 [355 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.12-1 [71.6 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.2.2-1 [54.1 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.13+ds-2+b1 [397 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libpbcopper2.0.0 amd64 2.0.0+dfsg-2 [606 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libpbbam2.0.0 amd64 2.0.0+dfsg-2 [705 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libblasr5.3.5 amd64 5.3.5+dfsg-4+b1 [1092 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libpbseq amd64 5.3.5+dfsg-4+b1 [5760 B] Get:28 http://deb.debian.org/debian bookworm/main amd64 blasr amd64 5.3.5+dfsg-4+b1 [223 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 pbbamtools amd64 2.0.0+dfsg-2 [122 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 pbdagcon amd64 0.3+git20180411.c14c422+dfsg-8 [355 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 smrtanalysis all 0~20210112 [3136 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 9507 kB in 0s (102 MB/s) Selecting previously unselected package libbrotli1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6647 files and directories currently installed.) Preparing to unpack .../00-libbrotli1_1.0.9-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../01-libkrb5support0_1.19.2-2+b2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.19.2-2+b2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../02-libk5crypto3_1.19.2-2+b2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.19.2-2+b2) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../03-libkeyutils1_1.6.3-1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-1) ... Selecting previously unselected package libssl3:amd64. Preparing to unpack .../04-libssl3_3.0.4-2_amd64.deb ... Unpacking libssl3:amd64 (3.0.4-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../05-libkrb5-3_1.19.2-2+b2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.19.2-2+b2) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../06-libgssapi-krb5-2_1.19.2-2+b2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.19.2-2+b2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../07-libsasl2-modules-db_2.1.28+dfsg-6_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-6) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../08-libsasl2-2_2.1.28+dfsg-6_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-6) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../09-libldap-2.5-0_2.5.12+dfsg-2_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.12+dfsg-2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../10-libnghttp2-14_1.47.0-1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.47.0-1+b1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../11-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../12-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../13-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../14-libcurl4_7.84.0-2_amd64.deb ... Unpacking libcurl4:amd64 (7.84.0-2) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../15-libaec0_1.0.6-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.6-1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../16-libsz2_1.0.6-1_amd64.deb ... Unpacking libsz2:amd64 (1.0.6-1) ... Selecting previously unselected package libhdf5-103-1:amd64. Preparing to unpack .../17-libhdf5-103-1_1.10.7+repack-4+b1_amd64.deb ... Unpacking libhdf5-103-1:amd64 (1.10.7+repack-4+b1) ... Selecting previously unselected package libhdf5-cpp-103-1:amd64. Preparing to unpack .../18-libhdf5-cpp-103-1_1.10.7+repack-4+b1_amd64.deb ... Unpacking libhdf5-cpp-103-1:amd64 (1.10.7+repack-4+b1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../19-libcurl3-gnutls_7.84.0-2_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.84.0-2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../20-libdeflate0_1.12-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.12-1) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../21-libhtscodecs2_1.2.2-1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.2.2-1) ... Selecting previously unselected package libhts3:amd64. Preparing to unpack .../22-libhts3_1.13+ds-2+b1_amd64.deb ... Unpacking libhts3:amd64 (1.13+ds-2+b1) ... Selecting previously unselected package libpbcopper2.0.0:amd64. Preparing to unpack .../23-libpbcopper2.0.0_2.0.0+dfsg-2_amd64.deb ... Unpacking libpbcopper2.0.0:amd64 (2.0.0+dfsg-2) ... Selecting previously unselected package libpbbam2.0.0:amd64. Preparing to unpack .../24-libpbbam2.0.0_2.0.0+dfsg-2_amd64.deb ... Unpacking libpbbam2.0.0:amd64 (2.0.0+dfsg-2) ... Selecting previously unselected package libblasr5.3.5:amd64. Preparing to unpack .../25-libblasr5.3.5_5.3.5+dfsg-4+b1_amd64.deb ... Unpacking libblasr5.3.5:amd64 (5.3.5+dfsg-4+b1) ... Selecting previously unselected package libpbseq:amd64. Preparing to unpack .../26-libpbseq_5.3.5+dfsg-4+b1_amd64.deb ... Unpacking libpbseq:amd64 (5.3.5+dfsg-4+b1) ... Selecting previously unselected package blasr. Preparing to unpack .../27-blasr_5.3.5+dfsg-4+b1_amd64.deb ... Unpacking blasr (5.3.5+dfsg-4+b1) ... Selecting previously unselected package pbbamtools. Preparing to unpack .../28-pbbamtools_2.0.0+dfsg-2_amd64.deb ... Unpacking pbbamtools (2.0.0+dfsg-2) ... Selecting previously unselected package pbdagcon. Preparing to unpack .../29-pbdagcon_0.3+git20180411.c14c422+dfsg-8_amd64.deb ... Unpacking pbdagcon (0.3+git20180411.c14c422+dfsg-8) ... Selecting previously unselected package smrtanalysis. Preparing to unpack .../30-smrtanalysis_0~20210112_all.deb ... Unpacking smrtanalysis (0~20210112) ... Setting up libhtscodecs2:amd64 (1.2.2-1) ... Setting up libkeyutils1:amd64 (1.6.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libpbcopper2.0.0:amd64 (2.0.0+dfsg-2) ... Setting up libbrotli1:amd64 (1.0.9-2+b3) ... Setting up libssl3:amd64 (3.0.4-2) ... Setting up libnghttp2-14:amd64 (1.47.0-1+b1) ... Setting up libdeflate0:amd64 (1.12-1) ... Setting up libaec0:amd64 (1.0.6-1) ... Setting up libkrb5support0:amd64 (1.19.2-2+b2) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-6) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libk5crypto3:amd64 (1.19.2-2+b2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-6) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libkrb5-3:amd64 (1.19.2-2+b2) ... Setting up libsz2:amd64 (1.0.6-1) ... Setting up libldap-2.5-0:amd64 (2.5.12+dfsg-2) ... Setting up libgssapi-krb5-2:amd64 (1.19.2-2+b2) ... Setting up libcurl4:amd64 (7.84.0-2) ... Setting up libcurl3-gnutls:amd64 (7.84.0-2) ... Setting up libhdf5-103-1:amd64 (1.10.7+repack-4+b1) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.7+repack-4+b1) ... Setting up libhts3:amd64 (1.13+ds-2+b1) ... Setting up libpbbam2.0.0:amd64 (2.0.0+dfsg-2) ... Setting up libblasr5.3.5:amd64 (5.3.5+dfsg-4+b1) ... Setting up libpbseq:amd64 (5.3.5+dfsg-4+b1) ... Setting up pbbamtools (2.0.0+dfsg-2) ... Setting up blasr (5.3.5+dfsg-4+b1) ... Setting up pbdagcon (0.3+git20180411.c14c422+dfsg-8) ... Setting up smrtanalysis (0~20210112) ... Processing triggers for libc-bin (2.33-8) ... 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', '-y', 'install', 'smrtanalysis'] 0m10.7s INFO: Running scripts post_install 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_install_exceptions'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_install_exceptions'] 0m10.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m10.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m10.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpywfi2u0f to sid 0m10.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m10.9s INFO: Running scripts pre_distupgrade 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', 'update'] 0m14.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [192 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9283 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6860 kB] Fetched 16.3 MB in 2s (6623 kB/s) Reading package lists... 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', 'update'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', '-yf', 'dist-upgrade'] 0m15.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: adduser bsdutils gcc-12-base libblkid1 libcap-ng0 libgcc-s1 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libmount1 libnghttp2-14 libseccomp2 libsemanage2 libsmartcols1 libstdc++6 libsystemd0 libudev1 libuuid1 mount util-linux util-linux-extra 22 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4973 kB of archives. After this operation, 90.1 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.38-5 [151 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.38-5 [164 kB] Get:3 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.38-5 [168 kB] Get:4 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.38-5 [1225 kB] Get:5 http://deb.debian.org/debian sid/main amd64 mount amd64 2.38-5 [192 kB] Get:6 http://deb.debian.org/debian sid/main amd64 adduser all 3.123 [136 kB] Get:7 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.1.0-7 [207 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 12.1.0-7 [614 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 12.1.0-7 [50.3 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.38-5 [206 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.3-1+b1 [19.2 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.38-5 [223 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.4-1+b1 [48.8 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.4-1+b1 [101 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 251.3-1 [410 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 251.3-1 [183 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.38-5 [85.7 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20-1 [166 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20-1 [363 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20-1 [65.7 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20-1 [111 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.48.0-1 [83.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4973 kB in 0s (71.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6910 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38-5_amd64.deb ... Unpacking bsdutils (1:2.38-5) over (1:2.38-4) ... Setting up bsdutils (1:2.38-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6910 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38-5_amd64.deb ... Unpacking libsmartcols1:amd64 (2.38-5) over (2.38-4) ... Setting up libsmartcols1:amd64 (2.38-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6911 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.38-5_amd64.deb ... Unpacking util-linux-extra (2.38-5) over (2.38-4) ... Setting up util-linux-extra (2.38-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6911 files and directories currently installed.) Preparing to unpack .../util-linux_2.38-5_amd64.deb ... Unpacking util-linux (2.38-5) over (2.38-4) ... Setting up util-linux (2.38-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6911 files and directories currently installed.) Preparing to unpack .../mount_2.38-5_amd64.deb ... Unpacking mount (2.38-5) over (2.38-4) ... Preparing to unpack .../archives/adduser_3.123_all.deb ... Unpacking adduser (3.123) over (3.121) ... Setting up adduser (3.123) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6877 files and directories currently installed.) Preparing to unpack .../gcc-12-base_12.1.0-7_amd64.deb ... Unpacking gcc-12-base:amd64 (12.1.0-7) over (12.1.0-5) ... Setting up gcc-12-base:amd64 (12.1.0-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6877 files and directories currently installed.) Preparing to unpack .../libstdc++6_12.1.0-7_amd64.deb ... Unpacking libstdc++6:amd64 (12.1.0-7) over (12.1.0-5) ... Setting up libstdc++6:amd64 (12.1.0-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6877 files and directories currently installed.) Preparing to unpack .../libgcc-s1_12.1.0-7_amd64.deb ... Unpacking libgcc-s1:amd64 (12.1.0-7) over (12.1.0-5) ... Setting up libgcc-s1:amd64 (12.1.0-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6877 files and directories currently installed.) Preparing to unpack .../libblkid1_2.38-5_amd64.deb ... Unpacking libblkid1:amd64 (2.38-5) over (2.38-4) ... Setting up libblkid1:amd64 (2.38-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6878 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.3-1+b1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.3-1+b1) over (0.8.3-1) ... Setting up libcap-ng0:amd64 (0.8.3-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6879 files and directories currently installed.) Preparing to unpack .../libmount1_2.38-5_amd64.deb ... Unpacking libmount1:amd64 (2.38-5) over (2.38-4) ... Setting up libmount1:amd64 (2.38-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6880 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-1+b1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.4-1+b1) over (2.5.4-1) ... Setting up libseccomp2:amd64 (2.5.4-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6881 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.4-1+b1_amd64.deb ... Unpacking libsemanage2:amd64 (3.4-1+b1) over (3.4-1) ... Setting up libsemanage2:amd64 (3.4-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6882 files and directories currently installed.) Preparing to unpack .../libsystemd0_251.3-1_amd64.deb ... Unpacking libsystemd0:amd64 (251.3-1) over (251.2-7) ... Setting up libsystemd0:amd64 (251.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6882 files and directories currently installed.) Preparing to unpack .../libudev1_251.3-1_amd64.deb ... Unpacking libudev1:amd64 (251.3-1) over (251.2-7) ... Setting up libudev1:amd64 (251.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6882 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38-5_amd64.deb ... Unpacking libuuid1:amd64 (2.38-5) over (2.38-4) ... Setting up libuuid1:amd64 (2.38-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6882 files and directories currently installed.) Preparing to unpack .../libgssapi-krb5-2_1.20-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20-1) over (1.19.2-2+b2) ... Preparing to unpack .../libkrb5-3_1.20-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20-1) over (1.19.2-2+b2) ... Preparing to unpack .../libkrb5support0_1.20-1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20-1) over (1.19.2-2+b2) ... Preparing to unpack .../libk5crypto3_1.20-1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20-1) over (1.19.2-2+b2) ... Preparing to unpack .../libnghttp2-14_1.48.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.48.0-1) over (1.47.0-1+b1) ... Setting up libnghttp2-14:amd64 (1.48.0-1) ... Setting up libkrb5support0:amd64 (1.20-1) ... Setting up libk5crypto3:amd64 (1.20-1) ... Setting up mount (2.38-5) ... Setting up libkrb5-3:amd64 (1.20-1) ... Setting up libgssapi-krb5-2:amd64 (1.20-1) ... Processing triggers for libc-bin (2.33-8) ... 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', '-yf', 'dist-upgrade'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.4s DUMP: b83b682dd875dde3fd412f5574fe3cf1 - 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'show', '--no-all-versions', 'smrtanalysis'] 0m16.6s DUMP: Package: smrtanalysis Version: 0~20210112 Installed-Size: 9 Maintainer: Debian Med Packaging Team Architecture: all Depends: pbbamtools, blasr, pbdagcon Suggests: pbh5tools, pbbarcode, pbalign, pbgenomicconsensus, kineticstools, falcon Description-en: software suite for single molecule, real-time sequencing SMRT? Analysis is a powerful, open-source bioinformatics software suite available for analysis of DNA sequencing data from Pacific Biosciences?? SMRT technology. Users can choose from a variety of analysis protocols that utilize PacBio? and third-party tools. Analysis protocols include de novo genome assembly, cDNA mapping, DNA base-modification detection, and long-amplicon analysis to determine phased consensus sequences. . This is a metapackage that depends on the components of SMRT Analysis. Description-md5: 07f41ceb2de8cc7b1a670a30f40ef08a Homepage: https://www.pacb.com/products-and-services/analytical-software/smrt-analysis/ Section: science Priority: optional Filename: pool/main/s/smrtanalysis/smrtanalysis_0~20210112_all.deb Size: 3136 MD5sum: 4d9c8ea0d8b25fe172c84fa7246bf4d0 SHA256: cb25ec016078e29241a96d60e584290011d21f125431ddba64c30f624e47499f 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'show', '--no-all-versions', 'smrtanalysis'] 0m16.6s INFO: apt-cache knows about the following packages: smrtanalysis 0m16.6s INFO: Running scripts pre_install 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_database-server'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_database-server'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_exceptions'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_exceptions'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_extras'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_extras'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'policy'] 0m16.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'policy'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'policy', 'smrtanalysis'] 0m16.7s DUMP: smrtanalysis: Installed: 0~20210112 Candidate: 0~20210112 Version table: *** 0~20210112 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'policy', 'smrtanalysis'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', '-y', 'install', 'smrtanalysis'] 0m17.1s DUMP: Reading package lists... Building dependency tree... Reading state information... smrtanalysis is already the newest version (0~20210112). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', '-y', 'install', 'smrtanalysis'] 0m17.1s INFO: Running scripts post_install 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_install_exceptions'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_install_exceptions'] 0m17.1s INFO: Running scripts post_distupgrade 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m17.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m17.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m17.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m17.7s INFO: Running scripts pre_install 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_database-server'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_database-server'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_exceptions'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_exceptions'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_extras'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_extras'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'policy'] 0m17.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'policy'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'policy', 'smrtanalysis'] 0m17.9s DUMP: smrtanalysis: Installed: 0~20210112 Candidate: 0~20210112 Version table: *** 0~20210112 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-cache', 'policy', 'smrtanalysis'] 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', '-y', 'install', 'smrtanalysis=0~20210112'] 0m18.2s DUMP: Reading package lists... Building dependency tree... Reading state information... smrtanalysis is already the newest version (0~20210112). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', '-y', 'install', 'smrtanalysis=0~20210112'] 0m18.2s INFO: Running scripts post_install 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_install_exceptions'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_install_exceptions'] 0m18.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m18.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m18.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', '-ac', '--ignore-obsolete'] 0m19.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', '-ac', '--ignore-obsolete'] 0m19.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.5s DUMP: 0.15.2 0m19.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.5s INFO: Running adequate version 0.15.2 now. 0m19.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'smrtanalysis'] 0m19.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'smrtanalysis'] 0m19.5s INFO: Running scripts pre_remove 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_remove_exceptions'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/pre_remove_exceptions'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.3s DUMP: install ok installed adduser adduser 3.123 install ok installed apt apt 2.5.1 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6.1 install ok installed blasr blasr 5.3.5+dfsg-4+b1 install ok installed bsdutils bsdutils 1:2.38-5 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.1.0-7 install ok installed gpgv gpgv 2.2.35-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.64 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libaec0:amd64 libaec0 1.0.6-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblasr5.3.5:amd64 libblasr5.3.5 5.3.5+dfsg-4+b1 install ok installed libblkid1:amd64 libblkid1 2.38-5 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-8 install ok installed libc6:amd64 libc6 2.33-8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.84.0-2 install ok installed libcurl4:amd64 libcurl4 7.84.0-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.263 install ok installed libdeflate0:amd64 libdeflate0 1.12-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12.1.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20-1 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.7+repack-4+b1 install ok installed libhdf5-cpp-103-1:amd64 libhdf5-cpp-103-1 1.10.7+repack-4+b1 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhts3:amd64 libhts3 1.13+ds-2+b1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.2.2-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.20-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20-1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.12+dfsg-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38-5 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.48.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-13 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-13 install ok installed libpam-runtime libpam-runtime 1.4.0-13 install ok installed libpam0g:amd64 libpam0g 1.4.0-13 install ok installed libpbbam2.0.0:amd64 libpbbam2.0.0 2.0.0+dfsg-2 install ok installed libpbcopper2.0.0:amd64 libpbcopper2.0.0 2.0.0+dfsg-2 install ok installed libpbseq:amd64 libpbseq 5.3.5+dfsg-4+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-6 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38-5 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.4-2 install ok installed libstdc++6:amd64 libstdc++6 12.1.0-7 install ok installed libsystemd0:amd64 libsystemd0 251.3-1 install ok installed libsz2:amd64 libsz2 1.0.6-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.3-1 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38-5 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed pbbamtools pbbamtools 2.0.0+dfsg-2 install ok installed pbdagcon pbdagcon 0.3+git20180411.c14c422+dfsg-8 install ok installed perl-base perl-base 5.34.0-5 install ok installed sed sed 4.8-1 install ok installed sgml-base sgml-base 1.30 install ok installed smrtanalysis smrtanalysis 0~20210112 install ok installed sysvinit-utils sysvinit-utils 3.03-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022a-1 install ok installed util-linux util-linux 2.38-5 install ok installed util-linux-extra util-linux-extra 2.38-5 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', 'remove', 'blasr', 'libaec0:amd64', 'libblasr5.3.5:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'libnghttp2-14:amd64', 'libpbbam2.0.0:amd64', 'libpbcopper2.0.0:amd64', 'libpbseq:amd64', 'libpsl5:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libsz2:amd64', 'pbbamtools', 'pbdagcon', 'smrtanalysis'] 0m21.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: blasr libaec0 libblasr5.3.5 libbrotli1 libcurl3-gnutls libcurl4 libdeflate0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-cpp-103-1 libhts3 libhtscodecs2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 libnghttp2-14 libpbbam2.0.0 libpbcopper2.0.0 libpbseq libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl3 libsz2 pbbamtools pbdagcon smrtanalysis 0 upgraded, 0 newly installed, 31 to remove and 0 not upgraded. After this operation, 28.9 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6877 files and directories currently installed.) Removing smrtanalysis (0~20210112) ... Removing blasr (5.3.5+dfsg-4+b1) ... Removing pbdagcon (0.3+git20180411.c14c422+dfsg-8) ... Removing libpbseq:amd64 (5.3.5+dfsg-4+b1) ... Removing libblasr5.3.5:amd64 (5.3.5+dfsg-4+b1) ... Removing libhdf5-cpp-103-1:amd64 (1.10.7+repack-4+b1) ... Removing libhdf5-103-1:amd64 (1.10.7+repack-4+b1) ... Removing libsz2:amd64 (1.0.6-1) ... Removing libaec0:amd64 (1.0.6-1) ... Removing libcurl4:amd64 (7.84.0-2) ... Removing pbbamtools (2.0.0+dfsg-2) ... Removing libpbbam2.0.0:amd64 (2.0.0+dfsg-2) ... Removing libpbcopper2.0.0:amd64 (2.0.0+dfsg-2) ... Removing libhts3:amd64 (1.13+ds-2+b1) ... Removing libcurl3-gnutls:amd64 (7.84.0-2) ... Removing libbrotli1:amd64 (1.0.9-2+b3) ... Removing libdeflate0:amd64 (1.12-1) ... Removing libgssapi-krb5-2:amd64 (1.20-1) ... Removing libhtscodecs2:amd64 (1.2.2-1) ... Removing libkrb5-3:amd64 (1.20-1) ... Removing libk5crypto3:amd64 (1.20-1) ... Removing libkeyutils1:amd64 (1.6.3-1) ... Removing libkrb5support0:amd64 (1.20-1) ... Removing libldap-2.5-0:amd64 (2.5.12+dfsg-2) ... Removing libnghttp2-14:amd64 (1.48.0-1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-6) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-6) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing libssl3:amd64 (3.0.4-2) ... Processing triggers for libc-bin (2.33-8) ... 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', 'remove', 'blasr', 'libaec0:amd64', 'libblasr5.3.5:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'libnghttp2-14:amd64', 'libpbbam2.0.0:amd64', 'libpbcopper2.0.0:amd64', 'libpbseq:amd64', 'libpsl5:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libsz2:amd64', 'pbbamtools', 'pbdagcon', 'smrtanalysis'] 0m21.0s INFO: Running scripts post_remove 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_remove_exceptions'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_remove_exceptions'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg', '--purge', 'blasr', 'libaec0:amd64', 'libblasr5.3.5:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'libnghttp2-14:amd64', 'libpbbam2.0.0:amd64', 'libpbcopper2.0.0:amd64', 'libpbseq:amd64', 'libpsl5:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libsz2:amd64', 'pbbamtools', 'pbdagcon'] 0m21.0s DUMP: dpkg: warning: ignoring request to remove blasr which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libblasr5.3.5 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed (Reading database ... 6619 files and directories currently installed.) Purging configuration files for libgssapi-krb5-2:amd64 (1.20-1) ... dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-cpp-103-1 which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libpbbam2.0.0 which isn't installed dpkg: warning: ignoring request to remove libpbcopper2.0.0 which isn't installed dpkg: warning: ignoring request to remove libpbseq which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove pbbamtools which isn't installed dpkg: warning: ignoring request to remove pbdagcon which isn't installed 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg', '--purge', 'blasr', 'libaec0:amd64', 'libblasr5.3.5:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'libnghttp2-14:amd64', 'libpbbam2.0.0:amd64', 'libpbcopper2.0.0:amd64', 'libpbseq:amd64', 'libpsl5:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libsz2:amd64', 'pbbamtools', 'pbdagcon'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg', '--purge', 'smrtanalysis'] 0m21.0s DUMP: dpkg: warning: ignoring request to remove smrtanalysis which isn't installed 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg', '--purge', 'smrtanalysis'] 0m21.0s INFO: Running scripts post_purge 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_purge_exceptions'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_purge_exceptions'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg', '--purge', '--pending'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg', '--purge', '--pending'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg', '--remove', '--pending'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg', '--remove', '--pending'] 0m21.0s INFO: Running scripts post_test 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_test_exceptions'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'tmp/scripts/post_test_exceptions'] 0m21.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m21.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg-divert', '--list'] 0m21.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'dpkg-divert', '--list'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', 'clean'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f', 'apt-get', 'clean'] 0m21.4s DEBUG: Recording chroot state 0m22.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/shm'] 0m22.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/shm'] 0m22.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/console'] 0m22.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/console'] 0m22.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/ptmx'] 0m22.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/ptmx'] 0m22.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/pts'] 0m22.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/dev/pts'] 0m22.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/proc'] 0m22.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f/proc'] 0m22.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m22.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpywfi2u0f'] 0m22.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpywfi2u0f 0m22.3s INFO: PASS: Upgrading between Debian distributions. 0m22.3s INFO: PASS: All tests. 0m22.3s INFO: piuparts run ends. ret=0 End: 2022-07-23 22:34:05 GMT