Start: 2024-04-10 08:57:12 GMT [testing] Package: snakemake Version: 7.21.0-1 Installed-Size: 1484 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-appdirs, python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-git, python3-humanfriendly, python3-jinja2 (>= 3.0~), python3-jsonschema, python3-nbformat, python3-psutil, python3-pulp (>= 2.0~), python3-requests, python3-retry, python3-smart-open (>= 3.0~), python3-stopit, python3-tabulate, python3-throttler, python3-toposort, python3-wrapt, python3-yaml, python3:any, ca-certificates, python3-pkg-resources, python3-ratelimiter, libjs-bootstrap, libjs-jquery Recommends: cwltool, imagemagick, python3-tz, python3-yappi, python3-pygments, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Suggests: slurm-client, snakemake-doc Description: pythonic workflow management system Homepage: https://snakemake.readthedocs.io/ Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_7.21.0-1_all.deb Size: 301468 MD5sum: 6ebcdc849d5c14eb9fcdb1b1fc0d0664 SHA256: 9c20c65785aee786ea6332a3194b68afabc378a46f585d597218bc870a96fec4 [sid] Package: snakemake Version: 7.32.4-3 Installed-Size: 1560 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-git, python3-humanfriendly, python3-jinja2 (>= 3.0~), python3-jsonschema, python3-nbformat, python3-packaging, python3-platformdirs, python3-psutil, python3-pulp (>= 2.0~), python3-requests, python3-retry, python3-smart-open (>= 3.0~), python3-stopit, python3-tabulate, python3-throttler, python3-toposort, python3-wrapt, python3-yaml, python3-yte, python3:any, ca-certificates, python3-pkg-resources, python3-ratelimiter, libjs-bootstrap, libjs-jquery Recommends: cwltool, imagemagick, python3-tz, python3-yappi, python3-pygments, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Suggests: slurm-client, snakemake-doc Description: pythonic workflow management system Homepage: https://snakemake.readthedocs.io/ Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_7.32.4-3_all.deb Size: 317544 MD5sum: 07998b152e65a37e13fc206a1b648206 SHA256: e3911b4b5581e6f87214832b378e3f894f43556b3fea6b15b896b77d422dd0dd Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt snakemake=7.32.4-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt snakemake=7.32.4-3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp2qoa1qm9 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp2qoa1qm9 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.6s DEBUG: Created policy-rc.d and chmodded it. 0m0.6s DEBUG: Created resolv.conf. 0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp2qoa1qm9/tmp/scripts/ 0m0.6s INFO: Running scripts post_chroot_unpack 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', 'update'] 0m1.9s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', 'update'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.8s DUMP: 0942a352c5bc637c4fdbc12bf31cd5ba - 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.8s INFO: Running scripts post_setup 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_setup_minimize'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_setup_minimize'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_setup_zz_backports'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_setup_zz_backports'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.0s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u5 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u4 install ok installed libc6:amd64 libc6 2.36-9+deb12u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u2 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.22-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.22-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m4.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 0m4.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 0m4.5s INFO: Running scripts is_testable 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s INFO: Running scripts pre_test 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_test_root_password'] 0m4.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_test_root_password'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 0m4.8s DUMP: Package: snakemake Version: 7.21.0-1 Installed-Size: 1484 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-appdirs, python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-git, python3-humanfriendly, python3-jinja2 (>= 3.0~), python3-jsonschema, python3-nbformat, python3-psutil, python3-pulp (>= 2.0~), python3-requests, python3-retry, python3-smart-open (>= 3.0~), python3-stopit, python3-tabulate, python3-throttler, python3-toposort, python3-wrapt, python3-yaml, python3:any, ca-certificates, python3-pkg-resources, python3-ratelimiter, libjs-bootstrap, libjs-jquery Recommends: cwltool, imagemagick, python3-tz, python3-yappi, python3-pygments, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Suggests: slurm-client, snakemake-doc Description-en: pythonic workflow management system Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment. Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Homepage: https://snakemake.readthedocs.io/ Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_7.21.0-1_all.deb Size: 301468 MD5sum: 6ebcdc849d5c14eb9fcdb1b1fc0d0664 SHA256: 9c20c65785aee786ea6332a3194b68afabc378a46f585d597218bc870a96fec4 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 0m4.8s INFO: apt-cache knows about the following packages: snakemake 0m4.8s INFO: Running scripts pre_install 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'policy'] 0m4.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.5,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'policy'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'policy', 'snakemake'] 0m5.0s DUMP: snakemake: Installed: (none) Candidate: 7.21.0-1 Version table: 7.21.0-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'policy', 'snakemake'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', '-y', 'install', 'snakemake'] 1m55.4s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fonts-glyphicons-halflings gir1.2-glib-2.0 git git-man libblas3 libbrotli1 libcurl3-gnutls libdatrie1 liberror-perl libexpat1 libgdbm-compat4 libgdbm6 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgssapi-krb5-2 libjs-bootstrap libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 libncursesw6 libnghttp2-14 libnsl2 libperl5.36 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsodium23 libsqlite3-0 libssh2-1 libssl3 libtirpc-common libtirpc3 libyaml-0-2 media-types openssl perl perl-modules-5.36 python3 python3-adal python3-aiohttp python3-aiosignal python3-appdirs python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-blinker python3-boto3 python3-botocore python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-colorama python3-configargparse python3-connection-pool python3-cryptography python3-dateutil python3-datrie python3-decorator python3-distutils python3-docutils python3-fastjsonschema python3-frozenlist python3-gi python3-git python3-gitdb python3-humanfriendly python3-idna python3-isodate python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-lib2to3 python3-markupsafe python3-marshmallow python3-minimal python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-nbformat python3-oauthlib python3-packaging python3-paramiko python3-pkg-resources python3-portalocker python3-psutil python3-pulp python3-py python3-pyparsing python3-pyrsistent python3-ratelimiter python3-requests python3-requests-oauthlib python3-retry python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-six python3-smart-open python3-smmap python3-stopit python3-strictyaml python3-tabulate python3-throttler python3-toposort python3-tqdm python3-traitlets python3-typing-extensions python3-uamqp python3-urllib3 python3-wrapt python3-yaml python3-yarl python3.11 python3.11-minimal readline-common sgml-base xml-core Suggested packages: gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn gdbm-l10n low-memory-monitor krb5-doc krb5-user sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-attr-doc python-azure-doc python-blinker-doc python-cryptography-doc python3-cryptography-vectors docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-fastjsonschema-doc python-git-doc python-jinja2-doc python-jsonschema-doc python3-pip python3-crypto python-nacl-doc python3-gssapi python3-setuptools python-psutil-doc subversion python3-pytest python-pyparsing-doc python3-openssl python3-socks python-requests-doc python3-nose python3-brotli python3.11-venv python3.11-doc binutils binfmt-support readline-doc sgml-base-doc slurm-client snakemake-doc debhelper Recommended packages: patch less ssh-client libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules netbase libpaper-utils python3-pil python3-pygments python3-babel python3-json-pointer python3-rfc3987 python3-uritemplate python3-webcolors python3-invoke cwltool imagemagick python3-tz python3-yappi python3-biopython python3-dropbox python3-flask python3-ftputil python3-irodsclient python3-kubernetes The following NEW packages will be installed: ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fonts-glyphicons-halflings gir1.2-glib-2.0 git git-man libblas3 libbrotli1 libcurl3-gnutls libdatrie1 liberror-perl libexpat1 libgdbm-compat4 libgdbm6 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgssapi-krb5-2 libjs-bootstrap libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 libncursesw6 libnghttp2-14 libnsl2 libperl5.36 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsodium23 libsqlite3-0 libssh2-1 libssl3 libtirpc-common libtirpc3 libyaml-0-2 media-types openssl perl perl-modules-5.36 python3 python3-adal python3-aiohttp python3-aiosignal python3-appdirs python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-blinker python3-boto3 python3-botocore python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-colorama python3-configargparse python3-connection-pool python3-cryptography python3-dateutil python3-datrie python3-decorator python3-distutils python3-docutils python3-fastjsonschema python3-frozenlist python3-gi python3-git python3-gitdb python3-humanfriendly python3-idna python3-isodate python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-lib2to3 python3-markupsafe python3-marshmallow python3-minimal python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-nbformat python3-oauthlib python3-packaging python3-paramiko python3-pkg-resources python3-portalocker python3-psutil python3-pulp python3-py python3-pyparsing python3-pyrsistent python3-ratelimiter python3-requests python3-requests-oauthlib python3-retry python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-six python3-smart-open python3-smmap python3-stopit python3-strictyaml python3-tabulate python3-throttler python3-toposort python3-tqdm python3-traitlets python3-typing-extensions python3-uamqp python3-urllib3 python3-wrapt python3-yaml python3-yarl python3.11 python3.11-minimal readline-common sgml-base snakemake xml-core 0 upgraded, 147 newly installed, 0 to remove and 0 not upgraded. Need to get 62.6 MB of archives. After this operation, 845 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.11-1~deb12u2 [2019 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:16 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:27 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.11-1~deb12u2 [1419 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 coinor-libcoinutils3v5 amd64 2.11.4+repack1-2 [440 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 coinor-libosi1v5 amd64 0.108.6+repack1-2 [276 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 coinor-libclp1 amd64 1.17.6-3 [843 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 coinor-libcgl1 amd64 0.60.3+repack1-4 [409 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 coinor-libcbc3 amd64 2.10.8+ds1-1 [715 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 coinor-cbc amd64 2.10.8+ds1-1 [14.8 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 docutils-common all 0.19+dfsg-6 [127 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libgirepository-1.0-1 amd64 1.74.0-3 [101 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 gir1.2-glib-2.0 amd64 1.74.0-3 [159 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-10+deb12u5 [385 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 git-man all 1:2.39.2-1.1 [2049 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 git amd64 1:2.39.2-1.1 [7171 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libsodium23 amd64 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http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 python3-adal all 1.2.7-2 [32.1 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 python3-multidict amd64 6.0.4-1+b1 [31.6 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 python3-yarl amd64 1.8.2-1+b1 [49.8 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 python3-typing-extensions all 4.4.0-1 [45.2 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 python3-async-timeout all 4.0.2-1 [7476 B] Get:81 http://deb.debian.org/debian bookworm/main amd64 python3-frozenlist amd64 1.3.3-1+b1 [30.0 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 python3-aiosignal all 1.3.1-1 [6016 B] Get:83 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 python3-aiohttp amd64 3.8.4-1 [251 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 python3-avro all 1.11.1+dfsg-2 [70.5 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 python3-isodate all 0.6.1-1 [25.3 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 python3-blinker all 1.5-1 [14.7 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 python3-oauthlib all 3.2.2-1 [95.4 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 python3-requests-oauthlib all 1.3.0+ds-1 [20.7 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 python3-msrest all 0.6.21-2 [48.0 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 python3-msrestazure all 0.6.4-2 [26.4 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 python3-azure-storage all 20230112+git-1 [280 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 python3-colorama all 0.4.6-2 [36.8 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 python3-pyrsistent amd64 0.18.1-1+b3 [60.0 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 python3-jsonschema all 4.10.3-1 [67.9 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 python3-marshmallow all 3.18.0-1 [66.3 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 python3-msal all 1.21.0-1 [85.9 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 python3-gi amd64 3.42.2-3+b1 [219 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 python3-portalocker all 2.2.1-1 [18.5 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 python3-msal-extensions all 1.0.0-2 [16.9 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml.clib amd64 0.2.7-1+b2 [113 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml all 0.17.21-1 [103 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 python3-strictyaml all 1.6.1-3 [92.9 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 python3-tqdm all 4.64.1-1 [97.7 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 python3-uamqp amd64 1.5.3-1+b4 [647 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 python3-azure all 20230112+git-1 [11.9 MB] Get:110 http://deb.debian.org/debian bookworm/main amd64 python3-bcrypt amd64 3.2.2-1 [32.2 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 python3-jmespath all 1.0.1-1 [21.1 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 python3-botocore all 1.29.27+repack-1 [5502 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 python3-s3transfer all 0.6.0-1 [53.0 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 python3-boto3 all 1.26.27+dfsg-1 [187 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 python3-configargparse all 1.5.3-1 [26.1 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 python3-connection-pool all 0.0.3-2 [5584 B] Get:117 http://deb.debian.org/debian bookworm/main amd64 python3-datrie amd64 0.8.2-4+b1 [97.7 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 python3-roman all 3.3-3 [9880 B] Get:122 http://deb.debian.org/debian bookworm/main amd64 python3-docutils all 0.19+dfsg-6 [382 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 python3-fastjsonschema all 2.16.3-2 [21.6 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 python3-smmap all 5.0.0-1 [21.0 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 python3-gitdb all 4.0.9-2 [45.7 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 python3-git all 3.1.30-1+deb12u2 [135 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 python3-humanfriendly all 10.0-3 [85.2 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 python3-markupsafe amd64 2.1.2-1+b1 [13.2 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 python3-traitlets all 5.5.0-1 [92.4 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 python3-jupyter-core all 4.12.0-1 [27.3 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 python3-nacl amd64 1.5.0-2 [59.3 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 python3-nbformat all 5.5.0-1 [43.2 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 python3-paramiko all 2.12.0-2 [133 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 python3-psutil amd64 5.9.4-1+b1 [189 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 python3-pulp all 2.6.0+dfsg-1 [66.0 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 python3-ratelimiter amd64 1.2.0.post0-4 [5740 B] Get:140 http://deb.debian.org/debian bookworm/main amd64 python3-retry all 0.9.2-2 [7020 B] Get:141 http://deb.debian.org/debian bookworm/main amd64 python3-smart-open all 5.2.1-5 [87.9 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 python3-stopit all 1.1.2-2 [12.6 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 python3-tabulate all 0.8.9-1 [35.2 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 python3-throttler all 1.2.2-2 [7072 B] Get:145 http://deb.debian.org/debian bookworm/main amd64 python3-toposort all 1.9-1 [7272 B] Get:146 http://deb.debian.org/debian bookworm/main amd64 python3-wrapt amd64 1.14.1-2+b2 [42.1 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 snakemake all 7.21.0-1 [301 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 62.6 MB in 1s (51.6 MB/s) Selecting previously unselected package perl-modules-5.36. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6102 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.36_5.36.0-7+deb12u1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Selecting previously unselected package python3.11-minimal. Preparing to unpack .../8-python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libssl3:amd64 (3.0.11-1~deb12u2) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8434 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../02-libncursesw6_6.4-4_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../03-libkrb5support0_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../04-libk5crypto3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../05-libkeyutils1_1.6.3-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../06-libkrb5-3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../07-libgssapi-krb5-2_1.20.1-2+deb12u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../08-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../09-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../10-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../11-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../12-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../13-libsqlite3-0_3.40.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.1-2) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../14-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../15-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../16-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8942 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.11-1~deb12u2_amd64.deb ... Unpacking openssl (3.0.11-1~deb12u2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../004-libblas3_3.11.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../005-libquadmath0_12.2.0-14_amd64.deb ... Unpacking libquadmath0:amd64 (12.2.0-14) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../006-libgfortran5_12.2.0-14_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-14) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../007-liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) ... Selecting previously unselected package coinor-libcoinutils3v5:amd64. Preparing to unpack .../008-coinor-libcoinutils3v5_2.11.4+repack1-2_amd64.deb ... Unpacking coinor-libcoinutils3v5:amd64 (2.11.4+repack1-2) ... Selecting previously unselected package coinor-libosi1v5:amd64. Preparing to unpack .../009-coinor-libosi1v5_0.108.6+repack1-2_amd64.deb ... Unpacking coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Selecting previously unselected package coinor-libclp1:amd64. Preparing to unpack .../010-coinor-libclp1_1.17.6-3_amd64.deb ... Unpacking coinor-libclp1:amd64 (1.17.6-3) ... Selecting previously unselected package coinor-libcgl1:amd64. Preparing to unpack .../011-coinor-libcgl1_0.60.3+repack1-4_amd64.deb ... Unpacking coinor-libcgl1:amd64 (0.60.3+repack1-4) ... Selecting previously unselected package coinor-libcbc3:amd64. Preparing to unpack .../012-coinor-libcbc3_2.10.8+ds1-1_amd64.deb ... Unpacking coinor-libcbc3:amd64 (2.10.8+ds1-1) ... Selecting previously unselected package coinor-cbc. Preparing to unpack .../013-coinor-cbc_2.10.8+ds1-1_amd64.deb ... Unpacking coinor-cbc (2.10.8+ds1-1) ... Selecting previously unselected package xml-core. Preparing to unpack .../014-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package docutils-common. Preparing to unpack .../015-docutils-common_0.19+dfsg-6_all.deb ... Unpacking docutils-common (0.19+dfsg-6) ... Selecting previously unselected package fonts-glyphicons-halflings. Preparing to unpack .../016-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../017-libglib2.0-0_2.74.6-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.74.6-2) ... Selecting previously unselected package libgirepository-1.0-1:amd64. Preparing to unpack .../018-libgirepository-1.0-1_1.74.0-3_amd64.deb ... Unpacking libgirepository-1.0-1:amd64 (1.74.0-3) ... Selecting previously unselected package gir1.2-glib-2.0:amd64. Preparing to unpack .../019-gir1.2-glib-2.0_1.74.0-3_amd64.deb ... Unpacking gir1.2-glib-2.0:amd64 (1.74.0-3) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../020-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../021-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../022-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../023-libldap-2.5-0_2.5.13+dfsg-5_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../024-libnghttp2-14_1.52.0-1+deb12u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../025-libpsl5_0.21.2-1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.2-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../026-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../027-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../028-libcurl3-gnutls_7.88.1-10+deb12u5_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.88.1-10+deb12u5) ... Selecting previously unselected package liberror-perl. Preparing to unpack .../029-liberror-perl_0.17029-2_all.deb ... Unpacking liberror-perl (0.17029-2) ... Selecting previously unselected package git-man. Preparing to unpack .../030-git-man_1%3a2.39.2-1.1_all.deb ... Unpacking git-man (1:2.39.2-1.1) ... Selecting previously unselected package git. Preparing to unpack .../031-git_1%3a2.39.2-1.1_amd64.deb ... Unpacking git (1:2.39.2-1.1) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../032-libdatrie1_0.2.13-2+b1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.13-2+b1) ... Selecting previously unselected package libjs-bootstrap. Preparing to unpack .../033-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../034-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libsodium23:amd64. Preparing to unpack .../035-libsodium23_1.0.18-1_amd64.deb ... Unpacking libsodium23:amd64 (1.0.18-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../036-libyaml-0-2_0.2.5-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-1) ... Selecting previously unselected package python3-cffi-backend:amd64. Preparing to unpack .../037-python3-cffi-backend_1.15.1-5+b1_amd64.deb ... Unpacking python3-cffi-backend:amd64 (1.15.1-5+b1) ... Selecting previously unselected package python3-cryptography. Preparing to unpack .../038-python3-cryptography_38.0.4-3_amd64.deb ... Unpacking python3-cryptography (38.0.4-3) ... Selecting previously unselected package python3-six. Preparing to unpack .../039-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../040-python3-dateutil_2.8.2-2_all.deb ... Unpacking python3-dateutil (2.8.2-2) ... Selecting previously unselected package python3-jwt. Preparing to unpack .../041-python3-jwt_2.6.0-1_all.deb ... Unpacking python3-jwt (2.6.0-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../042-python3-certifi_2022.9.24-1_all.deb ... Unpacking python3-certifi (2022.9.24-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../043-python3-charset-normalizer_3.0.1-2_all.deb ... Unpacking python3-charset-normalizer (3.0.1-2) ... Selecting previously unselected package python3-idna. Preparing to unpack .../044-python3-idna_3.3-1_all.deb ... Unpacking python3-idna (3.3-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../045-python3-urllib3_1.26.12-1_all.deb ... Unpacking python3-urllib3 (1.26.12-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../046-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../047-python3-chardet_5.1.0+dfsg-2_all.deb ... 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Unpacking python3-pulp (2.6.0+dfsg-1) ... Selecting previously unselected package python3-py. Preparing to unpack .../111-python3-py_1.11.0-1_all.deb ... Unpacking python3-py (1.11.0-1) ... Selecting previously unselected package python3-ratelimiter. Preparing to unpack .../112-python3-ratelimiter_1.2.0.post0-4_amd64.deb ... Unpacking python3-ratelimiter (1.2.0.post0-4) ... Selecting previously unselected package python3-retry. Preparing to unpack .../113-python3-retry_0.9.2-2_all.deb ... Unpacking python3-retry (0.9.2-2) ... Selecting previously unselected package python3-smart-open. Preparing to unpack .../114-python3-smart-open_5.2.1-5_all.deb ... Unpacking python3-smart-open (5.2.1-5) ... Selecting previously unselected package python3-stopit. Preparing to unpack .../115-python3-stopit_1.1.2-2_all.deb ... Unpacking python3-stopit (1.1.2-2) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../116-python3-tabulate_0.8.9-1_all.deb ... 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No schema files found: doing nothing. Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up git-man (1:2.39.2-1.1) ... Setting up libgirepository-1.0-1:amd64 (1.74.0-3) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.0.11-1~deb12u2) ... Setting up readline-common (8.2-1.3) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up coinor-libcoinutils3v5:amd64 (2.11.4+repack1-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up gir1.2-glib-2.0:amd64 (1.74.0-3) ... Setting up coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Setting up xml-core (0.18+nmu1) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libcurl3-gnutls:amd64 (7.88.1-10+deb12u5) ... Setting up perl (5.36.0-7+deb12u1) ... Setting up coinor-libclp1:amd64 (1.17.6-3) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up coinor-libcgl1:amd64 (0.60.3+repack1-4) ... Setting up coinor-libcbc3:amd64 (2.10.8+ds1-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up liberror-perl (0.17029-2) ... Setting up coinor-cbc (2.10.8+ds1-1) ... Setting up git (1:2.39.2-1.1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-psutil (5.9.4-1+b1) ... Setting up python3-multidict (6.0.4-1+b1) ... Setting up python3-frozenlist (1.3.3-1+b1) ... Setting up python3-aiosignal (1.3.1-1) ... Setting up python3-ratelimiter (1.2.0.post0-4) ... Setting up python3-async-timeout (4.0.2-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-isodate (0.6.1-1) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-humanfriendly (10.0-3) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-avro (1.11.1+dfsg-2) ... Setting up python3-jmespath (1.0.1-1) ... Setting up python3-gi (3.42.2-3+b1) ... Setting up python3-connection-pool (0.0.3-2) ... Setting up python3-idna (3.3-1) ... Setting up python3-wrapt (1.14.1-2+b2) ... Setting up python3-throttler (1.2.2-2) ... Setting up python3-typing-extensions (4.4.0-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-fastjsonschema (2.16.3-2) ... Setting up python3-pyrsistent:amd64 (0.18.1-1+b3) ... Setting up python3-traitlets (5.5.0-1) ... Setting up python3-portalocker (2.2.1-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-datrie:amd64 (0.8.2-4+b1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-yarl (1.8.2-1+b1) ... Setting up python3-smmap (5.0.0-1) ... Setting up python3-cffi-backend:amd64 (1.15.1-5+b1) ... Setting up python3-blinker (1.5-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-toposort (1.9-1) ... Setting up python3-configargparse (1.5.3-1) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-jwt (2.6.0-1) ... Setting up python3-colorama (0.4.6-2) ... Setting up python3-pulp (2.6.0+dfsg-1) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-bcrypt (3.2.2-1) ... Setting up python3-tqdm (4.64.1-1) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... Setting up python3-aiohttp (3.8.4-1) ... Setting up python3-marshmallow (3.18.0-1) ... Setting up python3-tabulate (0.8.9-1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-gitdb (4.0.9-2) ... Setting up python3-uamqp (1.5.3-1+b4) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-jsonschema (4.10.3-1) ... Setting up python3-cryptography (38.0.4-3) ... Setting up python3-git (3.1.30-1+deb12u2) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-retry (0.9.2-2) ... Setting up python3-ruamel.yaml (0.17.21-1) ... Setting up python3-adal (1.2.7-2) ... Setting up python3-stopit (1.1.2-2) ... Setting up python3-jupyter-core (4.12.0-1) ... Setting up python3-nacl (1.5.0-2) ... Setting up python3-msal (1.21.0-1) ... Setting up python3-msal-extensions (1.0.0-2) ... Setting up python3-nbformat (5.5.0-1) ... Setting up python3-strictyaml (1.6.1-3) ... Setting up python3-oauthlib (3.2.2-1) ... Setting up python3-botocore (1.29.27+repack-1) ... Setting up python3-paramiko (2.12.0-2) ... Setting up python3-requests-oauthlib (1.3.0+ds-1) ... Setting up python3-s3transfer (0.6.0-1) ... Setting up python3-msrest (0.6.21-2) ... Setting up python3-boto3 (1.26.27+dfsg-1) ... Setting up python3-msrestazure (0.6.4-2) ... Setting up python3-azure (20230112+git-1) ... Setting up python3-azure-storage (20230112+git-1) ... Setting up python3-smart-open (5.2.1-5) ... Processing triggers for libc-bin (2.36-9+deb12u4) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up snakemake (7.21.0-1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', '-y', 'install', 'snakemake'] 1m55.4s INFO: Running scripts post_install 1m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_install_exceptions'] 1m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_install_exceptions'] 1m55.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 1m57.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 1m57.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp2qoa1qm9 to sid 1m57.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 1m57.4s INFO: Running scripts pre_distupgrade 1m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m57.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_distupgrade_exceptions'] 1m57.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_distupgrade_exceptions'] 1m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m57.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m57.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m57.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', 'update'] 2m1.8s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9906 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7193 kB] Fetched 17.3 MB in 3s (5450 kB/s) Reading package lists... 2m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', 'update'] 2m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', '-yf', 'dist-upgrade'] 4m58.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libglib2.0-0 libnsl2 libperl5.36 libquadmath0 libtirpc-common libtirpc3t64 perl-modules-5.36 python3-appdirs python3-pyrsistent python3-uamqp Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: coinor-libcbc3 libapt-pkg6.0 libcurl3-gnutls libdb5.3 libext2fs2 libgdbm-compat4 libgdbm6 libgnutls30 libhogweed6 libnettle8 libpsl5 libreadline8 libssh2-1 libssl3 libtirpc3 The following NEW packages will be installed: coinor-libcbc3.1 gcc-14-base gir1.2-girepository-2.0 libapt-pkg6.0t64 libcurl3t64-gnutls libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libperl5.38t64 libpsl5t64 libreadline8t64 libssh2-1t64 libssl3t64 libtirpc3t64 libunistring5 netbase perl-modules-5.38 python3-dpath python3-hatch-vcs python3-hatchling python3-jsonschema-specifications python3-pathspec python3-plac python3-platformdirs python3-pluggy python3-referencing python3-rpds-py python3-setuptools python3-setuptools-scm python3-trove-classifiers python3-websocket python3-yte The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils ca-certificates coinor-cbc coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 coreutils dash debconf debian-archive-keyring debianutils diffutils docutils-common dpkg e2fsprogs findutils gcc-12-base gir1.2-glib-2.0 git git-man gpgv grep gzip hostname init-system-helpers libacl1 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libbrotli1 libbz2-1.0 libc-bin libc6 libcap-ng0 libcap2 libcom-err2 libcrypt1 libdatrie1 libdebconfclient0 libexpat1 libffi8 libgcc-s1 libgcrypt20 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgmp10 libgpg-error0 libgssapi-krb5-2 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 liblz4-1 liblzma5 libmd0 libmount1 libncursesw6 libnghttp2-14 libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtirpc-common libudev1 libuuid1 libxxhash0 libzstd1 login logsave mawk media-types mount ncurses-base ncurses-bin openssl passwd perl perl-base python3 python3-adal python3-aiohttp python3-appdirs python3-async-timeout python3-attr python3-azure python3-azure-storage python3-blinker python3-boto3 python3-botocore python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-colorama python3-configargparse python3-cryptography python3-dateutil python3-datrie python3-decorator python3-distutils python3-docutils python3-fastjsonschema python3-frozenlist python3-gi python3-git python3-gitdb python3-humanfriendly python3-idna python3-isodate python3-jinja2 python3-jsonschema python3-jupyter-core python3-jwt python3-lib2to3 python3-markupsafe python3-marshmallow python3-minimal python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-nbformat python3-packaging python3-pkg-resources python3-psutil python3-pulp python3-py python3-pyparsing python3-pyrsistent python3-requests python3-requests-oauthlib python3-ruamel.yaml.clib python3-s3transfer python3-six python3-smart-open python3-smmap python3-tabulate python3-toposort python3-tqdm python3-traitlets python3-typing-extensions python3-uamqp python3-urllib3 python3-wrapt python3-yaml python3-yarl python3.11 python3.11-minimal readline-common sed snakemake sysvinit-utils tar tzdata usr-is-merged util-linux util-linux-extra xml-core zlib1g 195 upgraded, 37 newly installed, 15 to remove and 0 not upgraded. Need to get 99.7 MB of archives. After this operation, 176 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13 [70.6 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.17 [89.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-16 [2754 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-16 [603 kB] Get:6 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14-20240330-1 [43.2 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14-20240330-1 [71.9 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-2 [708 kB] Get:12 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-2 [61.4 kB] Get:13 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.6.1+really5.4.5-1 [240 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255.4-1+b1 [364 kB] Get:15 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40-5 [100 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:17 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-2.1 [11.4 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.4-2 [16.9 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-2.1 [48.5 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:23 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-3.2 [2899 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-6 [697 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.23-5.1+b1 [73.0 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.23-5.1+b1 [48.8 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libperl5.38t64 amd64 5.38.2-3.2+b2 [4279 kB] Get:28 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-3.2+b2 [236 kB] Get:29 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.38.2-3.2+b2 [1644 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [38.0 kB] Get:31 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3.1 [87.6 kB] Get:32 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.86 [119 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.3-7 [67.7 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-2+b2 [74.9 kB] Get:36 http://deb.debian.org/debian sid/main amd64 python3-uamqp amd64 1.6.9-1 [875 kB] Get:37 http://deb.debian.org/debian sid/main amd64 python3-cryptography amd64 42.0.5-2 [1186 kB] Get:38 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:39 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.16+dfsg-2 [185 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14-20240330-1 [713 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.7.14 [986 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.9.1-2.2 [296 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.9.1-2.2 [328 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-4 [418 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.2-1 [425 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.5-2 [1437 kB] Get:49 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.14 [1370 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.7.1-2 [432 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.2.1-3 [2244 kB] Get:54 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.8-3+b3 [597 kB] Get:55 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.8-3+b3 [1879 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.8-3+b3 [817 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.8-3+b3 [1792 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.3-7 [54.4 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.3-7 [265 kB] Get:61 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20240113-1 [342 kB] Get:64 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:65 http://deb.debian.org/debian sid/main amd64 tzdata all 2024a-2 [255 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.2-1 [895 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.0-2.4 [20.2 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:78 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.61.0-1 [75.3 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255.4-1+b1 [126 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b1 [26.6 kB] Get:81 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:82 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.6 [1510 kB] Get:83 http://deb.debian.org/debian sid/main amd64 python3-humanfriendly all 10.0-5 [85.4 kB] Get:84 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get:85 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get:87 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:88 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get:89 http://deb.debian.org/debian sid/main amd64 python3-cffi-backend amd64 1.16.0-2+b1 [112 kB] Get:90 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-3.1 [2950 kB] Get:91 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Get:92 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:93 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Get:94 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-4 [431 kB] Get:95 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.12-1.1 [133 kB] Get:96 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:97 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.13+dfsg1-4 [616 kB] Get:98 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20240113-1 [431 kB] Get:99 http://deb.debian.org/debian sid/main amd64 sed amd64 4.9-2 [329 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40-5 [163 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40-5 [194 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40-5 [135 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40-5 [32.0 kB] Get:104 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40-5 [1205 kB] Get:105 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.40-5 [253 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.271+b3 [10.2 kB] Get:107 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:109 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2 [277 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b3 [90.3 kB] Get:111 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.13+dfsg1-4 [973 kB] Get:112 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:113 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.40-3 [649 kB] Get:114 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1 [47.0 kB] Get:116 http://deb.debian.org/debian sid/main amd64 usr-is-merged all 39 [5572 B] Get:117 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:118 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20240113-1 [268 kB] Get:119 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-7 [32.2 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get:122 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:123 http://deb.debian.org/debian sid/main amd64 coinor-libcoinutils3v5 amd64 2.11.4+repack1-4 [448 kB] Get:124 http://deb.debian.org/debian sid/main amd64 coinor-libosi1v5 amd64 0.108.9+ds-1 [279 kB] Get:125 http://deb.debian.org/debian sid/main amd64 coinor-libclp1 amd64 1.17.9+ds-1 [867 kB] Get:126 http://deb.debian.org/debian sid/main amd64 coinor-libcgl1 amd64 0.60.8+ds-1 [416 kB] Get:127 http://deb.debian.org/debian sid/main amd64 coinor-cbc amd64 2.10.11+ds1-2 [16.1 kB] Get:128 http://deb.debian.org/debian sid/main amd64 coinor-libcbc3.1 amd64 2.10.11+ds1-2 [705 kB] Get:129 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2.4 [20.1 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libext2fs2t64 amd64 1.47.0-2.4 [206 kB] Get:131 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.0-2.4 [571 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.2 [10.9 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.2 [82.6 kB] Get:135 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40-5 [147 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.3-7 [140 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.2-1 [32.4 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:140 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240123-1 [136 kB] Get:141 http://deb.debian.org/debian sid/main amd64 python3-docutils all 0.20.1+dfsg-3 [389 kB] Get:142 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:143 http://deb.debian.org/debian sid/main amd64 docutils-common all 0.20.1+dfsg-3 [128 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14-20240330-1 [147 kB] Get:145 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.3.0-17 [42.6 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.78.4-6 [275 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.78.4-6 [1222 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libgirepository-1.0-1 amd64 1.78.1-19 [112 kB] Get:149 http://deb.debian.org/debian sid/main amd64 gir1.2-glib-2.0 amd64 1.78.1-19 [164 kB] Get:150 http://deb.debian.org/debian sid/main amd64 gir1.2-girepository-2.0 amd64 1.78.1-19 [37.1 kB] Get:151 http://deb.debian.org/debian sid/main amd64 git amd64 1:2.43.0-1+b1 [7541 kB] Get:152 http://deb.debian.org/debian sid/main amd64 git-man all 1:2.43.0-1 [2112 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.0-2.4 [25.0 kB] Get:155 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get:156 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get:157 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.10.0-1 [66.2 kB] Get:158 http://deb.debian.org/debian sid/main amd64 python3-jwt all 2.7.0-1 [29.7 kB] Get:159 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get:160 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.6-2 [37.0 kB] Get:161 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get:162 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:163 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:164 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get:165 http://deb.debian.org/debian sid/main amd64 python3-adal all 1.2.7-3 [32.2 kB] Get:166 http://deb.debian.org/debian sid/main amd64 python3-multidict amd64 6.0.4-1.1 [44.2 kB] Get:167 http://deb.debian.org/debian sid/main amd64 python3-yarl amd64 1.8.2-3+b1 [70.4 kB] Get:168 http://deb.debian.org/debian sid/main amd64 python3-async-timeout all 4.0.3-1 [7660 B] Get:169 http://deb.debian.org/debian sid/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get:170 http://deb.debian.org/debian sid/main amd64 python3-frozenlist amd64 1.4.0-1+b1 [60.0 kB] Get:171 http://deb.debian.org/debian sid/main amd64 python3-aiohttp amd64 3.9.1-1 [373 kB] Get:172 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:173 http://deb.debian.org/debian sid/main amd64 python3-isodate all 0.6.1-2 [24.9 kB] Get:174 http://deb.debian.org/debian sid/main amd64 python3-azure-storage all 20230705+git-1 [285 kB] Get:175 http://deb.debian.org/debian sid/main amd64 python3-requests-oauthlib all 1.3.1-1 [21.1 kB] Get:176 http://deb.debian.org/debian sid/main amd64 python3-msrest all 0.6.21-4 [47.7 kB] Get:177 http://deb.debian.org/debian sid/main amd64 python3-msrestazure all 0.6.4-3 [26.5 kB] Get:178 http://deb.debian.org/debian sid/main amd64 python3-colorama 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http://deb.debian.org/debian sid/main amd64 python3-azure all 20230705+git-1 [13.7 MB] Get:201 http://deb.debian.org/debian sid/main amd64 python3-blinker all 1.7.0-1 [15.5 kB] Get:202 http://deb.debian.org/debian sid/main amd64 python3-botocore all 1.34.46+repack-1 [6464 kB] Get:203 http://deb.debian.org/debian sid/main amd64 python3-s3transfer all 0.10.1-1 [55.6 kB] Get:204 http://deb.debian.org/debian sid/main amd64 python3-boto3 all 1.34.46+dfsg-1 [269 kB] Get:205 http://deb.debian.org/debian sid/main amd64 python3-configargparse all 1.7-1 [31.3 kB] Get:206 http://deb.debian.org/debian sid/main amd64 python3-datrie amd64 0.8.2-4+b2 [166 kB] Get:207 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:208 http://deb.debian.org/debian sid/main amd64 python3-dpath all 2.1.6-2 [19.7 kB] Get:209 http://deb.debian.org/debian sid/main amd64 python3-fastjsonschema all 2.19.1-1 [21.3 kB] Get:210 http://deb.debian.org/debian sid/main amd64 python3-smmap all 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5.9.8-2 [225 kB] Get:222 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.1-1 [145 kB] Get:223 http://deb.debian.org/debian sid/main amd64 python3-pulp all 2.7.0+dfsg-3 [72.3 kB] Get:224 http://deb.debian.org/debian sid/main amd64 python3-py all 1.11.0-2 [88.7 kB] Get:225 http://deb.debian.org/debian sid/main amd64 python3-pyrsistent amd64 0.20.0-1+b1 [66.0 kB] Get:226 http://deb.debian.org/debian sid/main amd64 python3-ruamel.yaml.clib amd64 0.2.8-1 [186 kB] Get:227 http://deb.debian.org/debian sid/main amd64 python3-smart-open all 5.2.1-6 [87.9 kB] Get:228 http://deb.debian.org/debian sid/main amd64 python3-tabulate all 0.8.10-1 [38.8 kB] Get:229 http://deb.debian.org/debian sid/main amd64 python3-toposort all 1.10-1 [7544 B] Get:230 http://deb.debian.org/debian sid/main amd64 python3-wrapt amd64 1.15.0-2+b1 [49.3 kB] Get:231 http://deb.debian.org/debian sid/main amd64 python3-yte all 1.5.4-1 [13.6 kB] Get:232 http://deb.debian.org/debian sid/main amd64 snakemake all 7.32.4-3 [318 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 99.7 MB in 2s (66.5 MB/s) (Reading database ... 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Setting up libaudit-common (1:3.1.2-2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 44266 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.4-2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.4-2) over (0.8.3-1+b3) ... Setting up libcap-ng0:amd64 (0.8.4-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 44265 files and directories currently installed.) Preparing to unpack .../perl_5.38.2-3.2+b2_amd64.deb ... Unpacking perl (5.38.2-3.2+b2) over (5.36.0-7+deb12u1) ... Selecting previously unselected package perl-modules-5.38. Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ... Unpacking perl-modules-5.38 (5.38.2-3.2) ... dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libpython3.11-stdlib:amd64 depends on libdb5.3. libperl5.36:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45679 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg2-1) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... 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Unpacking perl-base (5.38.2-3.2+b2) over (5.36.0-7+deb12u1) ... Setting up perl-base (5.38.2-3.2+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46208 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.8-5.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-5.1) over (1.0.8-5+b1) ... Setting up libbz2-1.0:amd64 (1.0.8-5.1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46206 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-2+b2_amd64.deb ... Unpacking libselinux1:amd64 (3.5-2+b2) over (3.4-1+b6) ... Setting up libselinux1:amd64 (3.5-2+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46207 files and directories currently installed.) Preparing to unpack .../0-python3-uamqp_1.6.9-1_amd64.deb ... Unpacking python3-uamqp (1.6.9-1) over (1.5.3-1+b4) ... Preparing to unpack .../1-python3-cryptography_42.0.5-2_amd64.deb ... Unpacking python3-cryptography (42.0.5-2) over (38.0.4-3) ... Preparing to unpack .../2-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) over (3.0.11-1~deb12u2) ... Preparing to unpack .../3-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) over (2.4+20151223.gitfa8646d.1-2+b2) ... Preparing to unpack .../4-libsasl2-2_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-6) over (2.1.28+dfsg-10) ... Preparing to unpack .../5-libldap-2.5-0_2.5.16+dfsg-2_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.16+dfsg-2) over (2.5.13+dfsg-5) ... Preparing to unpack .../6-libstdc++6_14-20240330-1_amd64.deb ... Unpacking libstdc++6:amd64 (14-20240330-1) over (12.2.0-14) ... Setting up libstdc++6:amd64 (14-20240330-1) ... dpkg: libapt-pkg6.0:amd64: dependency problems, but removing anyway as you requested: apt depends on libapt-pkg6.0 (>= 2.6.1). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46232 files and directories currently installed.) Removing libapt-pkg6.0:amd64 (2.6.1) ... dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested: libhogweed6:amd64 depends on libnettle8. libgnutls30:amd64 depends on libnettle8 (>= 3.7~). libcurl3-gnutls:amd64 depends on libnettle8. Removing libnettle8:amd64 (3.8.1-2) ... Selecting previously unselected package libapt-pkg6.0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46175 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.7.14_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.7.14) ... Setting up libapt-pkg6.0t64:amd64 (2.7.14) ... Selecting previously unselected package libnettle8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46225 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.9.1-2.2_amd64.deb ... Unpacking libnettle8t64:amd64 (3.9.1-2.2) ... Setting up libnettle8t64:amd64 (3.9.1-2.2) ... dpkg: libhogweed6:amd64: dependency problems, but removing anyway as you requested: libgnutls30:amd64 depends on libhogweed6 (>= 3.6). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46234 files and directories currently installed.) Removing libhogweed6:amd64 (3.8.1-2) ... Selecting previously unselected package libhogweed6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46228 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.9.1-2.2_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.9.1-2.2) ... Setting up libhogweed6t64:amd64 (3.9.1-2.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46235 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-4_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.3-4) over (0.24.1-2) ... Setting up libp11-kit0:amd64 (0.25.3-4) ... Selecting previously unselected package libunistring5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46235 files and directories currently installed.) Preparing to unpack .../libunistring5_1.2-1_amd64.deb ... Unpacking libunistring5:amd64 (1.2-1) ... Setting up libunistring5:amd64 (1.2-1) ... dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested: libcurl3-gnutls:amd64 depends on libgnutls30 (>= 3.7.5). apt depends on libgnutls30 (>= 3.7.5). (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46242 files and directories currently installed.) Preparing to unpack .../python3.11_3.11.8-3+b3_amd64.deb ... Unpacking python3.11 (3.11.8-3+b3) over (3.11.2-6) ... Preparing to unpack .../python3.11-minimal_3.11.8-3+b3_amd64.deb ... Unpacking python3.11-minimal (3.11.8-3+b3) over (3.11.2-6) ... Preparing to unpack .../libpython3.11-minimal_3.11.8-3+b3_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.8-3+b3) over (3.11.2-6) ... dpkg: libreadline8:amd64: dependency problems, but removing anyway as you requested: libpython3.11-stdlib:amd64 depends on libreadline8 (>= 7.0~beta). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46245 files and directories currently installed.) Removing libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libreadline8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46232 files and directories currently installed.) Preparing to unpack .../libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Preparing to unpack .../libpython3.11-stdlib_3.11.8-3+b3_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.8-3+b3) over (3.11.2-6) ... Preparing to unpack .../libpam-modules-bin_1.5.3-7_amd64.deb ... Unpacking libpam-modules-bin (1.5.3-7) over (1.5.2-6+deb12u1) ... Setting up libpam-modules-bin (1.5.3-7) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46269 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) over (8.2-1.3) ... Preparing to unpack .../libncursesw6_6.4+20240113-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20240113-1) over (6.4-4) ... Preparing to unpack .../libtinfo6_6.4+20240113-1_amd64.deb ... Unpacking libtinfo6:amd64 (6.4+20240113-1) over (6.4-4) ... Setting up libtinfo6:amd64 (6.4+20240113-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46269 files and directories currently installed.) Preparing to unpack .../media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) over (10.0.0) ... Preparing to unpack .../tzdata_2024a-2_all.deb ... Unpacking tzdata (2024a-2) over (2024a-0+deb12u1) ... Preparing to unpack .../libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) over (3.4.4-1) ... Setting up libffi8:amd64 (3.4.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45485 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.45.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.2-1) over (3.40.1-2) ... Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) over (2.5.0-1) ... Preparing to unpack .../libidn2-0_2.3.7-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2) over (2.3.3-1+b1) ... Setting up libidn2-0:amd64 (2.3.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45485 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3+b2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-3+b2) over (4.19.0-2) ... Setting up libtasn1-6:amd64 (4.19.0-3+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45486 files and directories currently installed.) Preparing to unpack .../0-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) over (1.0.9-2+b6) ... Preparing to unpack .../1-libgssapi-krb5-2_1.20.1-6+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-6+b1) over (1.20.1-2+deb12u1) ... Preparing to unpack .../2-libkrb5-3_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-6+b1) over (1.20.1-2+deb12u1) ... Preparing to unpack .../3-libk5crypto3_1.20.1-6+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-6+b1) over (1.20.1-2+deb12u1) ... Preparing to unpack .../4-libkrb5support0_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-6+b1) over (1.20.1-2+deb12u1) ... Preparing to unpack .../5-libcom-err2_1.47.0-2.4_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.0-2.4) over (1.47.0-2) ... Preparing to unpack .../6-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) over (1.6.3-2) ... Preparing to unpack .../7-libnghttp2-14_1.61.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.61.0-1) over (1.52.0-1+deb12u1) ... Preparing to unpack .../8-libudev1_255.4-1+b1_amd64.deb ... Unpacking libudev1:amd64 (255.4-1+b1) over (252.22-1~deb12u1) ... Setting up libudev1:amd64 (255.4-1+b1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45494 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3_amd64.deb ... Unpacking tar (1.35+dfsg-3) over (1.34+dfsg-1.2+deb12u1) ... Setting up tar (1.35+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45495 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.22.6_amd64.deb ... Unpacking dpkg (1.22.6) over (1.21.22) ... Setting up dpkg (1.22.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45483 files and directories currently installed.) Preparing to unpack .../python3-humanfriendly_10.0-5_all.deb ... Unpacking python3-humanfriendly (10.0-5) over (10.0-3) ... Setting up libpython3.11-minimal:amd64 (3.11.8-3+b3) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.8-3+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45483 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) over (3.11.2-1+b1) ... Setting up python3-minimal (3.11.8-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45482 files and directories currently installed.) Preparing to unpack .../0-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) over (3.11.2-1+b1) ... Preparing to unpack .../1-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) over (3.11.2-1+b1) ... Preparing to unpack .../2-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) over (20230311) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45491 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6_amd64.deb ... Unpacking dash (0.5.12-6) over (0.5.12-2) ... Setting up dash (0.5.12-6) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45491 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5_amd64.deb ... Unpacking findutils (4.9.0-5) over (4.9.0-4) ... Setting up findutils (4.9.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45491 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-4_amd64.deb ... Unpacking grep (3.11-4) over (3.8-5) ... Setting up grep (3.11-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45491 files and directories currently installed.) Preparing to unpack .../gzip_1.12-1.1_amd64.deb ... Unpacking gzip (1.12-1.1) over (1.12-1) ... dpkg: warning: old file '/bin/uncompress' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') dpkg: warning: old file '/bin/gunzip' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') Setting up gzip (1.12-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45491 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu2_amd64.deb ... Unpacking hostname (3.23+nmu2) over (3.23+nmu1) ... Setting up hostname (3.23+nmu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45491 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-4_amd64.deb ... Unpacking login (1:4.13+dfsg1-4) over (1:4.13+dfsg1-1+b1) ... Setting up login (1:4.13+dfsg1-4) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45490 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20240113-1_amd64.deb ... Unpacking ncurses-bin (6.4+20240113-1) over (6.4-4) ... Setting up ncurses-bin (6.4+20240113-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45490 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-2_amd64.deb ... Unpacking sed (4.9-2) over (4.9-1) ... Setting up sed (4.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45490 files and directories currently installed.) Preparing to unpack .../libblkid1_2.40-5_amd64.deb ... Unpacking libblkid1:amd64 (2.40-5) over (2.38.1-5+b1) ... Setting up libblkid1:amd64 (2.40-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45489 files and directories currently installed.) Preparing to unpack .../libmount1_2.40-5_amd64.deb ... Unpacking libmount1:amd64 (2.40-5) over (2.38.1-5+b1) ... Setting up libmount1:amd64 (2.40-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45488 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40-5_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40-5) over (2.38.1-5+b1) ... Setting up libsmartcols1:amd64 (2.40-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45487 files and directories currently installed.) Preparing to unpack .../libuuid1_2.40-5_amd64.deb ... Unpacking libuuid1:amd64 (2.40-5) over (2.38.1-5+b1) ... Setting up libuuid1:amd64 (2.40-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45486 files and directories currently installed.) Preparing to unpack .../util-linux_2.40-5_amd64.deb ... Unpacking util-linux (2.40-5) over (2.38.1-5+b1) ... Setting up util-linux (2.40-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45462 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.40-5_amd64.deb ... Unpacking util-linux-extra (2.40-5) over (2.38.1-5+b1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/etc/init.d': Directory not empty Setting up util-linux-extra (2.40-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45487 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.271+b3_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.271+b3) over (0.270) ... Setting up libdebconfclient0:amd64 (0.271+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45488 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.3_amd64.deb ... Unpacking base-passwd (3.6.3) over (3.6.1) ... Setting up base-passwd (3.6.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45488 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.4-1) ... Setting up libsemanage-common (3.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45488 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2_amd64.deb ... Unpacking libsepol2:amd64 (3.5-2) over (3.4-2.1) ... Setting up libsepol2:amd64 (3.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45488 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1+b3_amd64.deb ... Unpacking libsemanage2:amd64 (3.5-1+b3) over (3.4-1+b5) ... Setting up libsemanage2:amd64 (3.5-1+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45488 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-4_amd64.deb ... Unpacking passwd (1:4.13+dfsg1-4) over (1:4.13+dfsg1-1+b1) ... Setting up passwd (1:4.13+dfsg1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45487 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.137_all.deb ... Unpacking adduser (3.137) over (3.134) ... Setting up adduser (3.137) ... Installing new version of config file /etc/adduser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45481 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-3_amd64.deb ... Unpacking gpgv (2.2.40-3) over (2.2.40-1.1) ... Setting up gpgv (2.2.40-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45481 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2023.4_all.deb ... Unpacking debian-archive-keyring (2023.4) over (2023.3+deb12u1) ... Setting up debian-archive-keyring (2023.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45481 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-1) over (2.5.4-1+b3) ... Setting up libseccomp2:amd64 (2.5.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45480 files and directories currently installed.) Preparing to unpack .../usr-is-merged_39_all.deb ... Unpacking usr-is-merged (39) over (37~deb12u1) ... Setting up usr-is-merged (39) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45480 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.66_all.deb ... Unpacking init-system-helpers (1.66) over (1.65.2) ... Setting up init-system-helpers (1.66) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45480 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20240113-1_all.deb ... Unpacking ncurses-base (6.4+20240113-1) over (6.4-4) ... Setting up ncurses-base (6.4+20240113-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45478 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.08-7_amd64.deb ... Unpacking sysvinit-utils (3.08-7) over (3.06-4) ... dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/lsb': Directory not empty dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.08-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45478 files and directories currently installed.) Preparing to unpack .../0-libblas3_3.12.0-3_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-3) over (3.11.0-2) ... Preparing to unpack .../1-libgfortran5_14-20240330-1_amd64.deb ... Unpacking libgfortran5:amd64 (14-20240330-1) over (12.2.0-14) ... Preparing to unpack .../2-liblapack3_3.12.0-3_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-3) over (3.11.0-2) ... Preparing to unpack .../3-coinor-libcoinutils3v5_2.11.4+repack1-4_amd64.deb ... Unpacking coinor-libcoinutils3v5:amd64 (2.11.4+repack1-4) over (2.11.4+repack1-2) ... Preparing to unpack .../4-coinor-libosi1v5_0.108.9+ds-1_amd64.deb ... Unpacking coinor-libosi1v5:amd64 (0.108.9+ds-1) over (0.108.6+repack1-2) ... Preparing to unpack .../5-coinor-libclp1_1.17.9+ds-1_amd64.deb ... Unpacking coinor-libclp1:amd64 (1.17.9+ds-1) over (1.17.6-3) ... Preparing to unpack .../6-coinor-libcgl1_0.60.8+ds-1_amd64.deb ... Unpacking coinor-libcgl1:amd64 (0.60.8+ds-1) over (0.60.3+repack1-4) ... Preparing to unpack .../7-coinor-cbc_2.10.11+ds1-2_amd64.deb ... Unpacking coinor-cbc (2.10.11+ds1-2) over (2.10.8+ds1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45478 files and directories currently installed.) Removing coinor-libcbc3:amd64 (2.10.8+ds1-1) ... Selecting previously unselected package coinor-libcbc3.1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45468 files and directories currently installed.) Preparing to unpack .../coinor-libcbc3.1_2.10.11+ds1-2_amd64.deb ... Unpacking coinor-libcbc3.1:amd64 (2.10.11+ds1-2) ... Preparing to unpack .../logsave_1.47.0-2.4_amd64.deb ... Unpacking logsave (1.47.0-2.4) over (1.47.0-2) ... dpkg: libext2fs2:amd64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.47.0-2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45478 files and directories currently installed.) Removing libext2fs2:amd64 (1.47.0-2) ... Selecting previously unselected package libext2fs2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45471 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.0-2.4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.0-2.4) ... Setting up libcom-err2:amd64 (1.47.0-2.4) ... Setting up libext2fs2t64:amd64 (1.47.0-2.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45487 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2.4_amd64.deb ... 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Preparing to unpack .../mount_2.40-5_amd64.deb ... Unpacking mount (2.40-5) over (2.38.1-5+b1) ... Preparing to unpack .../libpam-runtime_1.5.3-7_all.deb ... Unpacking libpam-runtime (1.5.3-7) over (1.5.2-6+deb12u1) ... Setting up libpam-runtime (1.5.3-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45489 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.2-1_amd64.deb ... Unpacking libacl1:amd64 (2.3.2-1) over (2.3.1-3) ... Setting up libacl1:amd64 (2.3.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 45489 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.2-1_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.2-1) over (1:2.5.1-4) ... Setting up libattr1:amd64 (1:2.5.2-1) ... (Reading database ... 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Unpacking python3-psutil (5.9.8-2) over (5.9.4-1+b1) ... Preparing to unpack .../82-python3-pyparsing_3.1.1-1_all.deb ... Unpacking python3-pyparsing (3.1.1-1) over (3.0.9-1) ... Preparing to unpack .../83-python3-pulp_2.7.0+dfsg-3_all.deb ... Unpacking python3-pulp (2.7.0+dfsg-3) over (2.6.0+dfsg-1) ... Preparing to unpack .../84-python3-py_1.11.0-2_all.deb ... Unpacking python3-py (1.11.0-2) over (1.11.0-1) ... Preparing to unpack .../85-python3-pyrsistent_0.20.0-1+b1_amd64.deb ... Unpacking python3-pyrsistent:amd64 (0.20.0-1+b1) over (0.18.1-1+b3) ... Preparing to unpack .../86-python3-ruamel.yaml.clib_0.2.8-1_amd64.deb ... Unpacking python3-ruamel.yaml.clib:amd64 (0.2.8-1) over (0.2.7-1+b2) ... Preparing to unpack .../87-python3-smart-open_5.2.1-6_all.deb ... Unpacking python3-smart-open (5.2.1-6) over (5.2.1-5) ... Preparing to unpack .../88-python3-tabulate_0.8.10-1_all.deb ... Unpacking python3-tabulate (0.8.10-1) over (0.8.9-1) ... 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Setting up libnghttp2-14:amd64 (1.61.0-1) ... Setting up libkrb5support0:amd64 (1.20.1-6+b1) ... Setting up gcc-12-base:amd64 (12.3.0-17) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Apr 10 09:00:05 UTC 2024. Universal Time is now: Wed Apr 10 09:00:05 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libglib2.0-0t64:amd64 (2.78.4-6) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up perl-modules-5.38 (5.38.2-3.2) ... Setting up libquadmath0:amd64 (14-20240330-1) ... Setting up libss2:amd64 (1.47.0-2.4) ... Setting up gir1.2-glib-2.0:amd64 (1.78.1-19) ... Setting up libncursesw6:amd64 (6.4+20240113-1) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up logsave (1.47.0-2.4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:amd64 (14-20240330-1) ... Setting up mount (2.40-5) ... Setting up xml-core (0.19) ... Setting up git-man (1:2.43.0-1) ... Setting up libgirepository-1.0-1:amd64 (1.78.1-19) ... Setting up netbase (6.4) ... Setting up mawk (1.3.4.20240123-1) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libperl5.38t64:amd64 (5.38.2-3.2+b2) ... Setting up libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Setting up openssl (3.2.1-3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.2-4) ... Setting up liblapack3:amd64 (3.12.0-3) ... Setting up libglib2.0-0:amd64 (2.78.4-6) ... Setting up e2fsprogs (1.47.0-2.4) ... Setting up libldap-2.5-0:amd64 (2.5.16+dfsg-2) ... Setting up coinor-libcoinutils3v5:amd64 (2.11.4+repack1-4) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 8 removed; done. Setting up perl (5.38.2-3.2+b2) ... Setting up gir1.2-girepository-2.0:amd64 (1.78.1-19) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up coinor-libosi1v5:amd64 (0.108.9+ds-1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.2) ... Setting up libpython3.11-stdlib:amd64 (3.11.8-3+b3) ... Setting up libcurl3t64-gnutls:amd64 (8.7.1-2) ... Setting up coinor-libclp1:amd64 (1.17.9+ds-1) ... Setting up git (1:2.43.0-1+b1) ... Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up coinor-libcgl1:amd64 (0.60.8+ds-1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.8-3+b3) ... Setting up python3 (3.11.8-1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-plac (1.4.1-1) ... Setting up python3-platformdirs (4.2.0-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up python3-multidict (6.0.4-1.1) ... Setting up python3-frozenlist (1.4.0-1+b1) ... Setting up python3-async-timeout (4.0.3-1) ... Setting up python3-six (1.16.0-6) ... Setting up python3-isodate (0.6.1-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up python3-humanfriendly (10.0-5) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-gi (3.48.2-1) ... Setting up python3-dpath (2.1.6-2) ... Setting up python3-idna (3.6-2) ... Setting up python3-wrapt (1.15.0-2+b1) ... Setting up coinor-libcbc3.1:amd64 (2.10.11+ds1-2) ... Setting up python3-typing-extensions (4.10.0-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.4.0-1) ... Setting up python3-rpds-py (0.12.0-3) ... Setting up python3-fastjsonschema (2.19.1-1) ... Setting up python3-pyrsistent:amd64 (0.20.0-1+b1) ... Setting up python3-trove-classifiers (2024.1.31-1) ... Setting up python3-traitlets (5.14.2-2) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-datrie:amd64 (0.8.2-4+b2) ... Setting up python3-pathspec (0.12.1-1) ... Setting up python3-lib2to3 (3.12.2-3) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-yarl (1.8.2-3+b1) ... Setting up python3-smmap (6.0.0-1) ... Setting up python3-websocket (1.7.0-1) ... Setting up python3-cffi-backend:amd64 (1.16.0-2+b1) ... Setting up python3-blinker (1.7.0-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.2-3) ... Setting up python3-toposort (1.10-1) ... Setting up python3-configargparse (1.7-1) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-py (1.11.0-2) ... Setting up python3-jwt (2.7.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-tqdm (4.66.2-2) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.8-1) ... Setting up python3-aiohttp (3.9.1-1) ... Setting up python3-marshmallow (3.20.1-1.1) ... Setting up python3-tabulate (0.8.10-1) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-gitdb (4.0.11-1) ... Setting up python3-uamqp (1.6.9-1) ... Setting up python3-setuptools-scm (8.0.4-2) ... Setting up python3-yte (1.5.4-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up coinor-cbc (2.10.11+ds1-2) ... Setting up python3-cryptography (42.0.5-2) ... Setting up python3-git (3.1.37-3) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-adal (1.2.7-3) ... Setting up python3-hatchling (1.22.4-1) ... Setting up python3-jupyter-core (5.3.2-1) ... Setting up python3-nacl (1.5.0-4) ... Setting up python3-requests-oauthlib (1.3.1-1) ... Setting up python3-hatch-vcs (0.4.0-1) ... Setting up python3-referencing (0.31.0-1) ... Setting up python3-pulp (2.7.0+dfsg-3) ... Setting up python3-msal (1.28.0-1) ... Setting up python3-msal-extensions (1.1.0-1) ... Setting up python3-msrest (0.6.21-4) ... Setting up python3-botocore (1.34.46+repack-1) ... Setting up python3-msrestazure (0.6.4-3) ... Setting up python3-jsonschema-specifications (2023.12.1-1) ... Setting up python3-s3transfer (0.10.1-1) ... Setting up python3-jsonschema (4.19.2-2) ... Setting up python3-boto3 (1.34.46+dfsg-1) ... Setting up python3-nbformat (5.9.1-1) ... Setting up python3-azure-storage (20230705+git-1) ... Setting up python3-azure (20230705+git-1) ... Setting up python3-smart-open (5.2.1-6) ... Processing triggers for libc-bin (2.37-16) ... Processing triggers for sgml-base (1.31) ... Processing triggers for debianutils (5.17) ... Setting up docutils-common (0.20.1+dfsg-3) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up snakemake (7.32.4-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 4m58.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', '-yf', 'dist-upgrade'] 4m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 4m59.7s DUMP: 92c7baa800b5eced301b82ef5464c3cd - 4m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 4m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 5m0.0s DUMP: Package: snakemake Version: 7.32.4-3 Installed-Size: 1560 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-git, python3-humanfriendly, python3-jinja2 (>= 3.0~), python3-jsonschema, python3-nbformat, python3-packaging, python3-platformdirs, python3-psutil, python3-pulp (>= 2.0~), python3-requests, python3-retry, python3-smart-open (>= 3.0~), python3-stopit, python3-tabulate, python3-throttler, python3-toposort, python3-wrapt, python3-yaml, python3-yte, python3:any, ca-certificates, python3-pkg-resources, python3-ratelimiter, libjs-bootstrap, libjs-jquery Recommends: cwltool, imagemagick, python3-tz, python3-yappi, python3-pygments, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Suggests: slurm-client, snakemake-doc Description-en: pythonic workflow management system Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment. Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Homepage: https://snakemake.readthedocs.io/ Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_7.32.4-3_all.deb Size: 317544 MD5sum: 07998b152e65a37e13fc206a1b648206 SHA256: e3911b4b5581e6f87214832b378e3f894f43556b3fea6b15b896b77d422dd0dd 5m0.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 5m0.0s INFO: apt-cache knows about the following packages: snakemake 5m0.0s INFO: Running scripts pre_install 5m0.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_database-server'] 5m0.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_database-server'] 5m0.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_exceptions'] 5m0.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_exceptions'] 5m0.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_extras'] 5m0.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_extras'] 5m0.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_foreign_architecture'] 5m0.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_foreign_architecture'] 5m0.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 5m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 5m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'policy'] 5m0.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 5m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'policy'] 5m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'policy', 'snakemake'] 5m0.2s DUMP: snakemake: Installed: 7.32.4-3 Candidate: 7.32.4-3 Version table: *** 7.32.4-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 5m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'policy', 'snakemake'] 5m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', '-y', 'install', 'snakemake'] 5m0.8s DUMP: Reading package lists... Building dependency tree... Reading state information... snakemake is already the newest version (7.32.4-3). The following packages were automatically installed and are no longer required: libglib2.0-0 libnsl2 libperl5.36 libquadmath0 libtirpc-common libtirpc3t64 perl-modules-5.36 python3-appdirs python3-pyrsistent python3-uamqp Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 5m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', '-y', 'install', 'snakemake'] 5m0.8s INFO: Running scripts post_install 5m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_install_exceptions'] 5m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_install_exceptions'] 5m0.9s INFO: Running scripts post_distupgrade 5m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_distupgrade_base_cleanup'] 5m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_distupgrade_base_cleanup'] 5m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_distupgrade_exceptions'] 5m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_distupgrade_exceptions'] 5m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 5m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 5m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_distupgrade_squeeze-backports'] 5m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_distupgrade_squeeze-backports'] 5m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_distupgrade_zz_backports'] 5m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_distupgrade_zz_backports'] 5m0.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 5m3.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 5m3.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 5m5.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 5m5.9s INFO: Running scripts pre_install 5m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_database-server'] 5m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_database-server'] 5m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_exceptions'] 5m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_exceptions'] 5m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_extras'] 5m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_extras'] 5m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_foreign_architecture'] 5m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_foreign_architecture'] 5m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 5m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 5m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'policy'] 5m6.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 5m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'policy'] 5m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'policy', 'snakemake'] 5m6.0s DUMP: snakemake: Installed: 7.32.4-3 Candidate: 7.32.4-3 Version table: *** 7.32.4-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 5m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-cache', 'policy', 'snakemake'] 5m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', '-y', 'install', 'snakemake=7.32.4-3'] 5m6.6s DUMP: Reading package lists... Building dependency tree... Reading state information... snakemake is already the newest version (7.32.4-3). The following packages were automatically installed and are no longer required: libglib2.0-0 libnsl2 libperl5.36 libquadmath0 libtirpc-common libtirpc3t64 perl-modules-5.36 python3-appdirs python3-pyrsistent python3-uamqp Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 5m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', '-y', 'install', 'snakemake=7.32.4-3'] 5m6.6s INFO: Running scripts post_install 5m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_install_exceptions'] 5m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_install_exceptions'] 5m6.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 5m9.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 5m9.3s INFO: /bin converted to /usr/bin by /usr merge 5m9.3s INFO: /lib converted to /usr/lib by /usr merge 5m9.3s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 5m9.3s INFO: /lib64 converted to /usr/lib64 by /usr merge 5m9.3s INFO: /sbin converted to /usr/sbin by /usr merge 5m12.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', '-ac', '--ignore-obsolete'] 5m17.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', '-ac', '--ignore-obsolete'] 5m17.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 5m17.8s DUMP: 0.15.6 5m17.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 5m17.8s INFO: Running adequate version 0.15.6 now. 5m17.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'snakemake'] 5m17.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'snakemake'] 5m17.9s INFO: Running scripts pre_remove 5m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 5m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 5m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 5m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 5m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 5m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 5m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 5m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 5m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 5m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 5m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_remove_exceptions'] 5m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/pre_remove_exceptions'] 5m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 5m23.6s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.7.14 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-5 install ok installed ca-certificates ca-certificates 20240203 install ok installed coinor-cbc coinor-cbc 2.10.11+ds1-2 install ok installed coinor-libcbc3.1:amd64 coinor-libcbc3.1 2.10.11+ds1-2 install ok installed coinor-libcgl1:amd64 coinor-libcgl1 0.60.8+ds-1 install ok installed coinor-libclp1:amd64 coinor-libclp1 1.17.9+ds-1 install ok installed coinor-libcoinutils3v5:amd64 coinor-libcoinutils3v5 2.11.4+repack1-4 install ok installed coinor-libosi1v5:amd64 coinor-libosi1v5 0.108.9+ds-1 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed docutils-common docutils-common 0.20.1+dfsg-3 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.3.0-17 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240330-1 install ok installed gir1.2-girepository-2.0:amd64 gir1.2-girepository-2.0 1.78.1-19 install ok installed gir1.2-glib-2.0:amd64 gir1.2-glib-2.0 1.78.1-19 install ok installed git git 1:2.43.0-1+b1 install ok installed git-man git-man 1:2.43.0-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.14 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.40-5 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-16 install ok installed libc6:amd64 libc6 2.37-16 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.7.1-2 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed liberror-perl liberror-perl 0.17029-2 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240330-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.23-5.1+b1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.23-5.1+b1 install ok installed libgfortran5:amd64 libgfortran5 14-20240330-1 install ok installed libgirepository-1.0-1:amd64 libgirepository-1.0-1 1.78.1-19 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.78.4-6 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.78.4-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-6+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-3 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-6+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-6+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-6+b1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.16+dfsg-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-5 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240113-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.61.0-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1 install ok installed libperl5.38t64:amd64 libperl5.38t64 5.38.2-3.2+b2 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.8-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.8-3+b3 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.8-3+b3 install ok installed libquadmath0:amd64 libquadmath0 14-20240330-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-4 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-6 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-5 install ok installed libsodium23:amd64 libsodium23 1.0.18-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.2-1 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.0-4.1+b2 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240330-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.2 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.2 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40-5 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.2.1-3 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl perl 5.38.2-3.2+b2 install ok installed perl-base perl-base 5.38.2-3.2+b2 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-3.2 install ok installed python3 python3 3.11.8-1 install ok installed python3-adal python3-adal 1.2.7-3 install ok installed python3-aiohttp python3-aiohttp 3.9.1-1 install ok installed python3-aiosignal python3-aiosignal 1.3.1-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-async-timeout python3-async-timeout 4.0.3-1 install ok installed python3-attr python3-attr 23.2.0-2 install ok installed python3-avro python3-avro 1.11.1+dfsg-2 install ok installed python3-azure python3-azure 20230705+git-1 install ok installed python3-azure-storage python3-azure-storage 20230705+git-1 install ok installed python3-bcrypt python3-bcrypt 3.2.2-1 install ok installed python3-blinker python3-blinker 1.7.0-1 install ok installed python3-boto3 python3-boto3 1.34.46+dfsg-1 install ok installed python3-botocore python3-botocore 1.34.46+repack-1 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.16.0-2+b1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-configargparse python3-configargparse 1.7-1 install ok installed python3-connection-pool python3-connection-pool 0.0.3-2 install ok installed python3-cryptography python3-cryptography 42.0.5-2 install ok installed python3-dateutil python3-dateutil 2.9.0-2 install ok installed python3-datrie:amd64 python3-datrie 0.8.2-4+b2 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-distutils python3-distutils 3.12.2-3 install ok installed python3-docutils python3-docutils 0.20.1+dfsg-3 install ok installed python3-dpath python3-dpath 2.1.6-2 install ok installed python3-fastjsonschema python3-fastjsonschema 2.19.1-1 install ok installed python3-frozenlist python3-frozenlist 1.4.0-1+b1 install ok installed python3-gi python3-gi 3.48.2-1 install ok installed python3-git python3-git 3.1.37-3 install ok installed python3-gitdb python3-gitdb 4.0.11-1 install ok installed python3-hatch-vcs python3-hatch-vcs 0.4.0-1 install ok installed python3-hatchling python3-hatchling 1.22.4-1 install ok installed python3-humanfriendly python3-humanfriendly 10.0-5 install ok installed python3-idna python3-idna 3.6-2 install ok installed python3-isodate python3-isodate 0.6.1-2 install ok installed python3-jinja2 python3-jinja2 3.1.3-1 install ok installed python3-jmespath python3-jmespath 1.0.1-1 install ok installed python3-jsonschema python3-jsonschema 4.19.2-2 install ok installed python3-jsonschema-specifications python3-jsonschema-specifications 2023.12.1-1 install ok installed python3-jupyter-core python3-jupyter-core 5.3.2-1 install ok installed python3-jwt python3-jwt 2.7.0-1 install ok installed python3-lib2to3 python3-lib2to3 3.12.2-3 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1 install ok installed python3-marshmallow python3-marshmallow 3.20.1-1.1 install ok installed python3-minimal python3-minimal 3.11.8-1 install ok installed python3-msal python3-msal 1.28.0-1 install ok installed python3-msal-extensions python3-msal-extensions 1.1.0-1 install ok installed python3-msrest python3-msrest 0.6.21-4 install ok installed python3-msrestazure python3-msrestazure 0.6.4-3 install ok installed python3-multidict python3-multidict 6.0.4-1.1 install ok installed python3-nacl python3-nacl 1.5.0-4 install ok installed python3-nbformat python3-nbformat 5.9.1-1 install ok installed python3-oauthlib python3-oauthlib 3.2.2-1 install ok installed python3-packaging python3-packaging 24.0-1 install ok installed python3-paramiko python3-paramiko 2.12.0-2 install ok installed python3-pathspec python3-pathspec 0.12.1-1 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-plac python3-plac 1.4.1-1 install ok installed python3-platformdirs python3-platformdirs 4.2.0-1 install ok installed python3-pluggy python3-pluggy 1.4.0-1 install ok installed python3-portalocker python3-portalocker 2.2.1-1 install ok installed python3-psutil python3-psutil 5.9.8-2 install ok installed python3-pulp python3-pulp 2.7.0+dfsg-3 install ok installed python3-py python3-py 1.11.0-2 install ok installed python3-pyparsing python3-pyparsing 3.1.1-1 install ok installed python3-pyrsistent:amd64 python3-pyrsistent 0.20.0-1+b1 install ok installed python3-ratelimiter python3-ratelimiter 1.2.0.post0-4 install ok installed python3-referencing python3-referencing 0.31.0-1 install ok installed python3-requests python3-requests 2.31.0+dfsg-1 install ok installed python3-requests-oauthlib python3-requests-oauthlib 1.3.1-1 install ok installed python3-retry python3-retry 0.9.2-2 install ok installed python3-roman python3-roman 3.3-3 install ok installed python3-rpds-py python3-rpds-py 0.12.0-3 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.17.21-1 install ok installed python3-ruamel.yaml.clib:amd64 python3-ruamel.yaml.clib 0.2.8-1 install ok installed python3-s3transfer python3-s3transfer 0.10.1-1 install ok installed python3-setuptools python3-setuptools 68.1.2-2 install ok installed python3-setuptools-scm python3-setuptools-scm 8.0.4-2 install ok installed python3-six python3-six 1.16.0-6 install ok installed python3-smart-open python3-smart-open 5.2.1-6 install ok installed python3-smmap python3-smmap 6.0.0-1 install ok installed python3-stopit python3-stopit 1.1.2-2 install ok installed python3-strictyaml python3-strictyaml 1.6.1-3 install ok installed python3-tabulate python3-tabulate 0.8.10-1 install ok installed python3-throttler python3-throttler 1.2.2-2 install ok installed python3-toposort python3-toposort 1.10-1 install ok installed python3-tqdm python3-tqdm 4.66.2-2 install ok installed python3-traitlets python3-traitlets 5.14.2-2 install ok installed python3-trove-classifiers python3-trove-classifiers 2024.1.31-1 install ok installed python3-typing-extensions python3-typing-extensions 4.10.0-1 install ok installed python3-uamqp python3-uamqp 1.6.9-1 install ok installed python3-urllib3 python3-urllib3 1.26.18-2 install ok installed python3-websocket python3-websocket 1.7.0-1 install ok installed python3-wrapt python3-wrapt 1.15.0-2+b1 install ok installed python3-yaml python3-yaml 6.0.1-2 install ok installed python3-yarl python3-yarl 1.8.2-3+b1 install ok installed python3-yte python3-yte 1.5.4-1 install ok installed python3.11 python3.11 3.11.8-3+b3 install ok installed python3.11-minimal python3.11-minimal 3.11.8-3+b3 install ok installed readline-common readline-common 8.2-4 install ok installed sed sed 4.9-2 install ok installed sgml-base sgml-base 1.31 install ok installed snakemake snakemake 7.32.4-3 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-2 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-5 install ok installed util-linux-extra util-linux-extra 2.40-5 install ok installed xml-core xml-core 0.19 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 5m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 5m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', 'remove', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-glyphicons-halflings', 'gir1.2-girepository-2.0:amd64', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl3t64-gnutls:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgssapi-krb5-2:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libperl5.36:amd64', 'libperl5.38t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.38', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-cryptography', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-frozenlist', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-hatch-vcs', 'python3-hatchling', 'python3-humanfriendly', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-jwt', 'python3-lib2to3', 'python3-markupsafe', 'python3-marshmallow', 'python3-minimal', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pathspec', 'python3-pkg-resources', 'python3-plac', 'python3-platformdirs', 'python3-pluggy', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-referencing', 'python3-requests', 'python3-requests-oauthlib', 'python3-retry', 'python3-roman', 'python3-rpds-py', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-tabulate', 'python3-throttler', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-trove-classifiers', 'python3-typing-extensions', 'python3-uamqp', 'python3-urllib3', 'python3-websocket', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3-yte', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'xml-core', 'snakemake'] 5m43.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fonts-glyphicons-halflings gir1.2-girepository-2.0 gir1.2-glib-2.0 git git-man libblas3 libbrotli1 libcurl3t64-gnutls libdatrie1 liberror-perl libexpat1 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libglib2.0-0t64 libgssapi-krb5-2 libjs-bootstrap libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 libncursesw6 libnghttp2-14 libnsl2 libperl5.36 libperl5.38t64 libpsl5t64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsodium23 libsqlite3-0 libssh2-1t64 libtirpc-common libtirpc3t64 libyaml-0-2 media-types netbase openssl perl perl-modules-5.36 perl-modules-5.38 python3 python3-adal python3-aiohttp python3-aiosignal python3-appdirs python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-blinker python3-boto3 python3-botocore python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-colorama python3-configargparse python3-connection-pool python3-cryptography python3-dateutil python3-datrie python3-decorator python3-distutils python3-docutils python3-dpath python3-fastjsonschema python3-frozenlist python3-gi python3-git python3-gitdb python3-hatch-vcs python3-hatchling python3-humanfriendly python3-idna python3-isodate python3-jinja2 python3-jmespath python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-jwt python3-lib2to3 python3-markupsafe python3-marshmallow python3-minimal python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-nbformat python3-oauthlib python3-packaging python3-paramiko python3-pathspec python3-pkg-resources python3-plac python3-platformdirs python3-pluggy python3-portalocker python3-psutil python3-pulp python3-py python3-pyparsing python3-pyrsistent python3-ratelimiter python3-referencing python3-requests python3-requests-oauthlib python3-retry python3-roman python3-rpds-py python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-setuptools python3-setuptools-scm python3-six python3-smart-open python3-smmap python3-stopit python3-strictyaml python3-tabulate python3-throttler python3-toposort python3-tqdm python3-traitlets python3-trove-classifiers python3-typing-extensions python3-uamqp python3-urllib3 python3-websocket python3-wrapt python3-yaml python3-yarl python3-yte python3.11 python3.11-minimal readline-common sgml-base snakemake xml-core 0 upgraded, 0 newly installed, 166 to remove and 0 not upgraded. After this operation, 1009 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49871 files and directories currently installed.) Removing snakemake (7.32.4-3) ... Removing python3-smart-open (5.2.1-6) ... Removing python3-pulp (2.7.0+dfsg-3) ... Removing coinor-cbc (2.10.11+ds1-2) ... Removing coinor-libcbc3.1:amd64 (2.10.11+ds1-2) ... Removing coinor-libcgl1:amd64 (0.60.8+ds-1) ... Removing coinor-libclp1:amd64 (1.17.9+ds-1) ... Removing coinor-libosi1v5:amd64 (0.108.9+ds-1) ... Removing coinor-libcoinutils3v5:amd64 (2.11.4+repack1-4) ... Removing python3-docutils (0.20.1+dfsg-3) ... Removing docutils-common (0.20.1+dfsg-3) ... Removing libjs-bootstrap (3.4.1+dfsg-3) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Removing python3-git (3.1.37-3) ... Removing git (1:2.43.0-1+b1) ... Removing git-man (1:2.43.0-1) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing libcurl3t64-gnutls:amd64 (8.7.1-2) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing python3-datrie:amd64 (0.8.2-4+b2) ... Removing libdatrie1:amd64 (0.2.13-3) ... Removing liberror-perl (0.17029-2) ... Removing python3-nbformat (5.9.1-1) ... Removing python3-jupyter-core (5.3.2-1) ... Removing python3-humanfriendly (10.0-5) ... Removing python3-boto3 (1.34.46+dfsg-1) ... Removing python3-s3transfer (0.10.1-1) ... Removing python3-botocore (1.34.46+repack-1) ... Removing python3-yte (1.5.4-1) ... Removing perl (5.38.2-3.2+b2) ... Removing libperl5.38t64:amd64 (5.38.2-3.2+b2) ... Removing libperl5.36:amd64 (5.36.0-7+deb12u1) ... Removing libgdbm-compat4t64:amd64 (1.23-5.1+b1) ... Removing libgdbm6t64:amd64 (1.23-5.1+b1) ... Removing libgfortran5:amd64 (14-20240330-1) ... Removing libglib2.0-0:amd64 (2.78.4-6) ... Removing libnsl2:amd64 (1.3.0-3+b2) ... Removing libtirpc3t64:amd64 (1.3.4+ds-1.2) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libkrb5-3:amd64 (1.20.1-6+b1) ... Removing libk5crypto3:amd64 (1.20.1-6+b1) ... Removing libkeyutils1:amd64 (1.6.3-3) ... Removing libkrb5support0:amd64 (1.20.1-6+b1) ... Removing libldap-2.5-0:amd64 (2.5.16+dfsg-2) ... Removing libnghttp2-14:amd64 (1.61.0-1) ... Removing libpsl5t64:amd64 (0.21.2-1.1) ... Removing libquadmath0:amd64 (14-20240330-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Removing python3-paramiko (2.12.0-2) ... Removing python3-nacl (1.5.0-4) ... Removing libsodium23:amd64 (1.0.18-1) ... Removing libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Removing libtirpc-common (1.3.4+ds-1.2) ... Removing perl-modules-5.36 (5.36.0-7+deb12u1) ... Removing perl-modules-5.38 (5.38.2-3.2) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-bcrypt (3.2.2-1) ... Removing python3-uamqp (1.6.9-1) ... Removing python3-configargparse (1.7-1) ... Removing python3-connection-pool (0.0.3-2) ... Removing python3-retry (0.9.2-2) ... Removing python3-decorator (5.1.1-5) ... Removing python3-dpath (2.1.6-2) ... Removing python3-fastjsonschema (2.19.1-1) ... Removing python3-gitdb (4.0.11-1) ... Removing python3-jinja2 (3.1.3-1) ... Removing python3-jmespath (1.0.1-1) ... Removing python3-markupsafe (2.1.5-1) ... Removing python3-stopit (1.1.2-2) ... Removing python3-py (1.11.0-2) ... Removing python3-plac (1.4.1-1) ... Removing python3-platformdirs (4.2.0-1) ... Removing python3-psutil (5.9.8-2) ... Removing python3-pyparsing (3.1.1-1) ... Removing python3-pyrsistent:amd64 (0.20.0-1+b1) ... Removing python3-ratelimiter (1.2.0.post0-4) ... Removing python3-roman (3.3-3) ... Removing python3-smmap (6.0.0-1) ... Removing python3-tabulate (0.8.10-1) ... Removing python3-throttler (1.2.2-2) ... Removing python3-toposort (1.10-1) ... Removing python3-traitlets (5.14.2-2) ... Removing python3-wrapt (1.15.0-2+b1) ... Removing xml-core (0.19) ... Removing sgml-base (1.31) ... Removing python3-azure (20230705+git-1) ... Removing python3-msal-extensions (1.1.0-1) ... Removing python3-gi (3.48.2-1) ... Removing gir1.2-girepository-2.0:amd64 (1.78.1-19) ... Removing gir1.2-glib-2.0:amd64 (1.78.1-19) ... Removing python3-aiohttp (3.9.1-1) ... Removing python3-yarl (1.8.2-3+b1) ... Removing python3-jsonschema (4.19.2-2) ... Removing python3-jsonschema-specifications (2023.12.1-1) ... Removing python3-hatch-vcs (0.4.0-1) ... Removing python3-setuptools-scm (8.0.4-2) ... Removing python3-setuptools (68.1.2-2) ... Removing python3-distutils (3.12.2-3) ... Removing python3-strictyaml (1.6.1-3) ... Removing python3-ruamel.yaml (0.17.21-1) ... Removing python3-ruamel.yaml.clib:amd64 (0.2.8-1) ... Removing python3-referencing (0.31.0-1) ... Removing python3-attr (23.2.0-2) ... Removing libgirepository-1.0-1:amd64 (1.78.1-19) ... Removing libglib2.0-0t64:amd64 (2.78.4-6) ... Removing python3-yaml (6.0.1-2) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing python3-msrestazure (0.6.4-3) ... Removing python3-adal (1.2.7-3) ... Removing python3-aiosignal (1.3.1-1) ... Removing python3-async-timeout (4.0.3-1) ... Removing python3-avro (1.11.1+dfsg-2) ... Removing python3-msrest (0.6.21-4) ... Removing python3-requests-oauthlib (1.3.1-1) ... Removing python3-oauthlib (3.2.2-1) ... Removing python3-blinker (1.7.0-1) ... Removing python3-msal (1.28.0-1) ... Removing python3-colorama (0.4.6-4) ... Removing python3-dateutil (2.9.0-2) ... Removing python3-frozenlist (1.4.0-1+b1) ... Removing python3-hatchling (1.22.4-1) ... Removing python3-jwt (2.7.0-1) ... Removing python3-lib2to3 (3.12.2-3) ... Removing python3-marshmallow (3.20.1-1.1) ... Removing python3-multidict (6.0.4-1.1) ... Removing python3-packaging (24.0-1) ... Removing python3-pathspec (0.12.1-1) ... Removing python3-pluggy (1.4.0-1) ... Removing python3-portalocker (2.2.1-1) ... Removing python3-rpds-py (0.12.0-3) ... Removing python3-tqdm (4.66.2-2) ... Removing python3-trove-classifiers (2024.1.31-1) ... Removing python3-websocket (1.7.0-1) ... Removing python3-requests (2.31.0+dfsg-1) ... Removing python3-azure-storage (20230705+git-1) ... Removing python3-certifi (2023.11.17-1) ... Removing python3-cryptography (42.0.5-2) ... Removing python3-cffi-backend:amd64 (1.16.0-2+b1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-idna (3.6-2) ... Removing python3-isodate (0.6.1-2) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-urllib3 (1.26.18-2) ... Removing python3-six (1.16.0-6) ... Removing python3-typing-extensions (4.10.0-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3 (3.11.8-1) ... Removing python3.11 (3.11.8-3+b3) ... Removing python3-minimal (3.11.8-1) ... Removing python3.11-minimal (3.11.8-3+b3) ... Removing libexpat1:amd64 (2.6.2-1) ... Removing libpython3-stdlib:amd64 (3.11.8-1) ... Removing libpython3.11-stdlib:amd64 (3.11.8-3+b3) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240113-1) ... Removing libpython3.11-minimal:amd64 (3.11.8-3+b3) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.45.2-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing openssl (3.2.1-3) ... Removing readline-common (8.2-4) ... Processing triggers for libc-bin (2.37-16) ... 5m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', 'remove', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-glyphicons-halflings', 'gir1.2-girepository-2.0:amd64', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl3t64-gnutls:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgssapi-krb5-2:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libperl5.36:amd64', 'libperl5.38t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.38', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-cryptography', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-frozenlist', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-hatch-vcs', 'python3-hatchling', 'python3-humanfriendly', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-jwt', 'python3-lib2to3', 'python3-markupsafe', 'python3-marshmallow', 'python3-minimal', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pathspec', 'python3-pkg-resources', 'python3-plac', 'python3-platformdirs', 'python3-pluggy', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-referencing', 'python3-requests', 'python3-requests-oauthlib', 'python3-retry', 'python3-roman', 'python3-rpds-py', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-tabulate', 'python3-throttler', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-trove-classifiers', 'python3-typing-extensions', 'python3-uamqp', 'python3-urllib3', 'python3-websocket', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3-yte', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'xml-core', 'snakemake'] 5m43.5s INFO: Running scripts post_remove 5m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_remove_exceptions'] 5m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_remove_exceptions'] 5m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg', '--purge', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-glyphicons-halflings', 'gir1.2-girepository-2.0:amd64', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl3t64-gnutls:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgssapi-krb5-2:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libperl5.36:amd64', 'libperl5.38t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.38', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-cryptography', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-frozenlist', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-hatch-vcs', 'python3-hatchling', 'python3-humanfriendly', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-jwt', 'python3-lib2to3', 'python3-markupsafe', 'python3-marshmallow', 'python3-minimal', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pathspec', 'python3-pkg-resources', 'python3-plac', 'python3-platformdirs', 'python3-pluggy', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-referencing', 'python3-requests', 'python3-requests-oauthlib', 'python3-retry', 'python3-roman', 'python3-rpds-py', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-tabulate', 'python3-throttler', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-trove-classifiers', 'python3-typing-extensions', 'python3-uamqp', 'python3-urllib3', 'python3-websocket', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3-yte', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'xml-core'] 5m43.8s DUMP: (Reading database ... 5356 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove coinor-cbc which isn't installed dpkg: warning: ignoring request to remove coinor-libcbc3.1 which isn't installed dpkg: warning: ignoring request to remove coinor-libcgl1 which isn't installed dpkg: warning: ignoring request to remove coinor-libclp1 which isn't installed dpkg: warning: ignoring request to remove coinor-libcoinutils3v5 which isn't installed dpkg: warning: ignoring request to remove coinor-libosi1v5 which isn't installed Purging configuration files for docutils-common (0.20.1+dfsg-3) ... dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove gir1.2-girepository-2.0 which isn't installed dpkg: warning: ignoring request to remove gir1.2-glib-2.0 which isn't installed Purging configuration files for git (1:2.43.0-1+b1) ... dpkg: warning: ignoring request to remove git-man which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgirepository-1.0-1 which isn't installed dpkg: warning: ignoring request to remove libglib2.0-0 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.78.4-6) ... Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libperl5.36 which isn't installed dpkg: warning: ignoring request to remove libperl5.38t64 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.8-3+b3) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-4) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsodium23 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1.2) ... Purging configuration files for libtirpc3t64:amd64 (1.3.4+ds-1.2) ... dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.2.1-3) ... Purging configuration files for perl (5.38.2-3.2+b2) ... dpkg: warning: ignoring request to remove perl-modules-5.36 which isn't installed dpkg: warning: ignoring request to remove perl-modules-5.38 which isn't installed Purging configuration files for python3 (3.11.8-1) ... dpkg: warning: ignoring request to remove python3-adal which isn't installed dpkg: warning: ignoring request to remove python3-aiohttp which isn't installed dpkg: warning: ignoring request to remove python3-aiosignal which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-async-timeout which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-avro which isn't installed dpkg: warning: ignoring request to remove python3-azure which isn't installed dpkg: warning: ignoring request to remove python3-azure-storage which isn't installed dpkg: warning: ignoring request to remove python3-bcrypt which isn't installed dpkg: warning: ignoring request to remove python3-blinker which isn't installed dpkg: warning: ignoring request to remove python3-boto3 which isn't installed dpkg: warning: ignoring request to remove python3-botocore which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-configargparse which isn't installed dpkg: warning: ignoring request to remove python3-connection-pool which isn't installed dpkg: warning: ignoring request to remove python3-cryptography which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-datrie which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-docutils which isn't installed dpkg: warning: ignoring request to remove python3-dpath which isn't installed dpkg: warning: ignoring request to remove python3-fastjsonschema which isn't installed dpkg: warning: ignoring request to remove python3-frozenlist which isn't installed dpkg: warning: ignoring request to remove python3-gi which isn't installed dpkg: warning: ignoring request to remove python3-git which isn't installed dpkg: warning: ignoring request to remove python3-gitdb which isn't installed dpkg: warning: ignoring request to remove python3-hatch-vcs which isn't installed dpkg: warning: ignoring request to remove python3-hatchling which isn't installed dpkg: warning: ignoring request to remove python3-humanfriendly which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-jmespath which isn't installed Purging configuration files for python3-jsonschema (4.19.2-2) ... dpkg: warning: ignoring request to remove python3-jsonschema-specifications which isn't installed dpkg: warning: ignoring request to remove python3-jupyter-core which isn't installed dpkg: warning: ignoring request to remove python3-jwt which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-marshmallow which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-msal which isn't installed dpkg: warning: ignoring request to remove python3-msal-extensions which isn't installed dpkg: warning: ignoring request to remove python3-msrest which isn't installed dpkg: warning: ignoring request to remove python3-msrestazure which isn't installed dpkg: warning: ignoring request to remove python3-multidict which isn't installed dpkg: warning: ignoring request to remove python3-nacl which isn't installed dpkg: warning: ignoring request to remove python3-nbformat which isn't installed dpkg: warning: ignoring request to remove python3-oauthlib which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-paramiko which isn't installed dpkg: warning: ignoring request to remove python3-pathspec which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-plac which isn't installed dpkg: warning: ignoring request to remove python3-platformdirs which isn't installed dpkg: warning: ignoring request to remove python3-pluggy which isn't installed dpkg: warning: ignoring request to remove python3-portalocker which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pulp which isn't installed dpkg: warning: ignoring request to remove python3-py which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pyrsistent which isn't installed dpkg: warning: ignoring request to remove python3-ratelimiter which isn't installed dpkg: warning: ignoring request to remove python3-referencing which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-requests-oauthlib which isn't installed dpkg: warning: ignoring request to remove python3-retry which isn't installed dpkg: warning: ignoring request to remove python3-roman which isn't installed dpkg: warning: ignoring request to remove python3-rpds-py which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml.clib which isn't installed dpkg: warning: ignoring request to remove python3-s3transfer which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-setuptools-scm which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-smart-open which isn't installed dpkg: warning: ignoring request to remove python3-smmap which isn't installed dpkg: warning: ignoring request to remove python3-stopit which isn't installed dpkg: warning: ignoring request to remove python3-strictyaml which isn't installed dpkg: warning: ignoring request to remove python3-tabulate which isn't installed dpkg: warning: ignoring request to remove python3-throttler which isn't installed dpkg: warning: ignoring request to remove python3-toposort which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-trove-classifiers which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-uamqp which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-websocket which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-yarl which isn't installed dpkg: warning: ignoring request to remove python3-yte which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.8-3+b3) ... Purging configuration files for readline-common (8.2-4) ... Purging configuration files for sgml-base (1.31) ... Purging configuration files for xml-core (0.19) ... 5m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg', '--purge', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-glyphicons-halflings', 'gir1.2-girepository-2.0:amd64', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl3t64-gnutls:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgssapi-krb5-2:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libperl5.36:amd64', 'libperl5.38t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-modules-5.38', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-cryptography', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-frozenlist', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-hatch-vcs', 'python3-hatchling', 'python3-humanfriendly', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-jwt', 'python3-lib2to3', 'python3-markupsafe', 'python3-marshmallow', 'python3-minimal', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pathspec', 'python3-pkg-resources', 'python3-plac', 'python3-platformdirs', 'python3-pluggy', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-referencing', 'python3-requests', 'python3-requests-oauthlib', 'python3-retry', 'python3-roman', 'python3-rpds-py', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-tabulate', 'python3-throttler', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-trove-classifiers', 'python3-typing-extensions', 'python3-uamqp', 'python3-urllib3', 'python3-websocket', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3-yte', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'xml-core'] 5m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg', '--purge', 'snakemake'] 5m43.8s DUMP: dpkg: warning: ignoring request to remove snakemake which isn't installed 5m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg', '--purge', 'snakemake'] 5m43.8s INFO: Running scripts post_purge 5m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_purge_exceptions'] 5m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_purge_exceptions'] 5m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg', '--purge', '--pending'] 5m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg', '--purge', '--pending'] 5m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg', '--remove', '--pending'] 5m43.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg', '--remove', '--pending'] 5m43.9s INFO: Running scripts post_test 5m43.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_test_exceptions'] 5m43.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'tmp/scripts/post_test_exceptions'] 5m43.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 5m44.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 5m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg-divert', '--list'] 5m44.1s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 5m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'dpkg-divert', '--list'] 5m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', 'clean'] 5m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9', 'apt-get', 'clean'] 5m44.2s DEBUG: Recording chroot state 5m45.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/shm'] 5m45.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/shm'] 5m45.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/console'] 5m45.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/console'] 5m45.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/ptmx'] 5m45.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/ptmx'] 5m45.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/pts'] 5m45.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/dev/pts'] 5m45.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/proc'] 5m45.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9/proc'] 5m45.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 5m45.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2qoa1qm9'] 5m45.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp2qoa1qm9 5m45.4s INFO: PASS: Upgrading between Debian distributions. 5m45.4s INFO: PASS: All tests. 5m45.4s INFO: piuparts run ends. ret=0 End: 2024-04-10 09:02:57 GMT