Start: 2025-02-21 03:58:59 GMT [testing] Package: snpeff Version: 5.2.f+dfsg-1 Installed-Size: 21 Maintainer: Debian Med Packaging Team Architecture: all Depends: default-jre, libsnpeff-java (= 5.2.f+dfsg-1) Suggests: vcfanno Description: genetic variant annotation and effect prediction toolbox - tool Homepage: https://pcingola.github.io/SnpEff/ Description-md5: 11554ad652b85830dc017ab4d21c9b35 Section: java Priority: optional Filename: pool/main/s/snpeff/snpeff_5.2.f+dfsg-1_all.deb Size: 7244 MD5sum: 6286a5cf01979f5ce9ab90177363f6bc SHA256: 26d97606e5416e8173cc252dcf520f0f4d900af388c9296623b84838d5e03fcc [sid] Package: snpeff Version: 5.2.f+dfsg-1 Installed-Size: 21 Maintainer: Debian Med Packaging Team Architecture: all Depends: default-jre, libsnpeff-java (= 5.2.f+dfsg-1) Suggests: vcfanno Description: genetic variant annotation and effect prediction toolbox - tool Homepage: https://pcingola.github.io/SnpEff/ Description-md5: 11554ad652b85830dc017ab4d21c9b35 Section: java Priority: optional Filename: pool/main/s/snpeff/snpeff_5.2.f+dfsg-1_all.deb Size: 7244 MD5sum: 6286a5cf01979f5ce9ab90177363f6bc SHA256: 26d97606e5416e8173cc252dcf520f0f4d900af388c9296623b84838d5e03fcc Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt snpeff=5.2.f+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt snpeff=5.2.f+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpdj674ye7 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpdj674ye7 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpdj674ye7/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', 'update'] 0m2.2s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [175 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9478 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6356 kB] Fetched 16.0 MB in 1s (14.0 MB/s) Reading package lists... 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', 'update'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt libapt-pkg6.0t64 libpam-modules libpam-modules-bin libpam-runtime libpam0g libsepol2 libssl3t64 libsystemd0 libudev1 openssl-provider-legacy perl-base sysvinit-utils tzdata 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 8573 kB of archives. After this operation, 10.2 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 perl-base amd64 5.40.1-2 [1665 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 openssl-provider-legacy amd64 3.4.1-1 [302 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.4.1-1 [2304 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257.3-1 [450 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257.3-1 [149 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libapt-pkg6.0t64 amd64 2.9.29 [1125 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 apt amd64 2.9.29 [1446 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 sysvinit-utils amd64 3.14-1 [33.3 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libpam-runtime all 1.7.0-3 [248 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libpam0g amd64 1.7.0-3 [69.7 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libpam-modules-bin amd64 1.7.0-3 [48.9 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libpam-modules amd64 1.7.0-3 [177 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025a-2 [259 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libsepol2 amd64 3.8-1 [296 kB] Preconfiguring packages ... Fetched 8573 kB in 0s (111 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../perl-base_5.40.1-2_amd64.deb ... Unpacking perl-base (5.40.1-2) over (5.40.0-8) ... Setting up perl-base (5.40.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.4.1-1_amd64.deb ... Unpacking openssl-provider-legacy (3.4.1-1) over (3.4.0-2) ... Setting up openssl-provider-legacy (3.4.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.4.1-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.4.1-1) over (3.4.0-2) ... Setting up libssl3t64:amd64 (3.4.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../libsystemd0_257.3-1_amd64.deb ... Unpacking libsystemd0:amd64 (257.3-1) over (257.2-3) ... Setting up libsystemd0:amd64 (257.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../libudev1_257.3-1_amd64.deb ... Unpacking libudev1:amd64 (257.3-1) over (257.2-3) ... Setting up libudev1:amd64 (257.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.29_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.29) over (2.9.28) ... Setting up libapt-pkg6.0t64:amd64 (2.9.29) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.29_amd64.deb ... Unpacking apt (2.9.29) over (2.9.28) ... Setting up apt (2.9.29) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.14-1_amd64.deb ... Unpacking sysvinit-utils (3.14-1) over (3.13-1) ... Setting up sysvinit-utils (3.14-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.7.0-3_all.deb ... Unpacking libpam-runtime (1.7.0-3) over (1.7.0-2) ... Setting up libpam-runtime (1.7.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../libpam0g_1.7.0-3_amd64.deb ... Unpacking libpam0g:amd64 (1.7.0-3) over (1.7.0-2) ... Setting up libpam0g:amd64 (1.7.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.7.0-3_amd64.deb ... Unpacking libpam-modules-bin (1.7.0-3) over (1.7.0-2) ... Setting up libpam-modules-bin (1.7.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.7.0-3_amd64.deb ... Unpacking libpam-modules:amd64 (1.7.0-3) over (1.7.0-2) ... Setting up libpam-modules:amd64 (1.7.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5026 files and directories currently installed.) Preparing to unpack .../tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) over (2024b-6) ... Preparing to unpack .../libsepol2_3.8-1_amd64.deb ... Unpacking libsepol2:amd64 (3.8-1) over (3.7-1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Feb 21 03:59:05 UTC 2025. Universal Time is now: Fri Feb 21 03:59:05 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsepol2:amd64 (3.8-1) ... Processing triggers for libc-bin (2.40-6) ... 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.7s DUMP: dc99dcb3b97538a1c5cd6e6dd3e7dbe6 - 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.7s INFO: Running scripts post_setup 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_setup_dummy_users'] 0m7.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_setup_dummy_users'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_setup_forbid_home'] 0m7.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_setup_forbid_home'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_setup_minimize'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_setup_minimize'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_setup_zz_backports'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_setup_zz_backports'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.6s DUMP: install ok installed apt apt 2.9.29 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.4-3 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.15 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-16 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.29 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libblkid1:amd64 libblkid1 2.40.4-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-6 install ok installed libc6:amd64 libc6 2.40-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-16 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-3 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-3 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3.1 install ok installed libsemanage-common libsemanage-common 3.7-2.1 install ok installed libsemanage2:amd64 libsemanage2 3.7-2.1+b1 install ok installed libsepol2:amd64 libsepol2 3.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-3 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-16 install ok installed libsystemd0:amd64 libsystemd0 257.3-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250125-2 install ok installed libudev1:amd64 libudev1 257.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.4-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-3 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.40.4-3 install ok installed ncurses-base ncurses-base 6.5+20250125-2 install ok installed ncurses-bin ncurses-bin 6.5+20250125-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl-base perl-base 5.40.1-2 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m7.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m8.0s INFO: Running scripts is_testable 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s INFO: Running scripts pre_test 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_test_root_password'] 0m8.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_test_root_password'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'show', '--no-all-versions', 'snpeff'] 0m8.2s DUMP: Package: snpeff Version: 5.2.f+dfsg-1 Installed-Size: 21 Maintainer: Debian Med Packaging Team Architecture: all Depends: default-jre, libsnpeff-java (= 5.2.f+dfsg-1) Suggests: vcfanno Description-en: genetic variant annotation and effect prediction toolbox - tool "We are all different!" Geneticists agree to this. Even twins, who are said to be identical are on a molecular level only "mostly" identical. And even within the exact same individual, healthy cells acquire mutations such that we are all genetic mosaics. Changes to individual cells may be induced by environmental factors, e.g. like UV light, or happen sporadically as mishaps during cellular divisions. . Because there are so many genetic differences, and most have just no particular meaning for the development of a phenotype, i.e. most have no effect, it would be nice to have heuristics implemented that direct the researcher towards single-nucleotide polymorphisms (SNPs) that are most likely to be relevant. This identifies the gene that causes or contributes to, e.g, an illness, and possibly also genes that are affected by that change. Such mechanistic understanding of a disease, particularly when multiple genes and multiple genetic variants are contributing to the then "polygenic" phenotype, is at the onset of drug development and increasingly also for selecting individualized therapies in the clinic. . SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes). The inputs are predicted variants (SNPs, insertions, deletions and MNPs). The input file is usually obtained as a result of a sequencing experiment, and it is usually in variant call format (VCF). . SnpEff analyzes the input variants. It annotates the variants and calculates the effects they produce on known genes (e.g. amino acid changes). . This package contains the command line tool. Description-md5: 11554ad652b85830dc017ab4d21c9b35 Homepage: https://pcingola.github.io/SnpEff/ Section: java Priority: optional Filename: pool/main/s/snpeff/snpeff_5.2.f+dfsg-1_all.deb Size: 7244 MD5sum: 6286a5cf01979f5ce9ab90177363f6bc SHA256: 26d97606e5416e8173cc252dcf520f0f4d900af388c9296623b84838d5e03fcc 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'show', '--no-all-versions', 'snpeff'] 0m8.2s INFO: apt-cache knows about the following packages: snpeff 0m8.2s INFO: Running scripts pre_install 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'policy'] 0m8.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'policy'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'policy', 'snpeff'] 0m8.3s DUMP: snpeff: Installed: (none) Candidate: 5.2.f+dfsg-1 Version table: 5.2.f+dfsg-1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'policy', 'snpeff'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', '-y', 'install', 'snpeff'] 0m33.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser adwaita-icon-theme ant ant-optional at-spi2-common ca-certificates ca-certificates-java dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jre default-jre-headless fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme java-common junit4 junit5 libactivation-java libantlr4-runtime-java libaopalliance-java libapache-pom-java libapfloat-java libapiguardian-java libapparmor1 libargs4j-java libasm-java libasound2-data libasound2t64 libatinject-jsr330-api-java libatk-bridge2.0-0t64 libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libbiojava6-java libbrotli1 libcairo-gobject2 libcairo2 libcdi-api-java libcharts4j-java libciftools-java libcloudproviders0 libcodemodel-java libcolord2 libcommons-beanutils-java libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-exec-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-math-java libcommons-math3-java libcommons-parent-java libcommons-text-java libcups2t64 libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdistlib-java libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libelf1t64 libepoxy0 liberror-prone-java libexec-maven-plugin-java libexpat1 libezmorph-java libfastinfoset-java libfastutil-java libffi8 libfontconfig1 libfreemarker-java libfreetype6 libfribidi0 libgbm1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0t64 libglvnd0 libglx-mesa0 libglx0 libgnutls30t64 libgoogle-gson-java libgraphite2-3 libgssapi-krb5-2 libgtk-3-0t64 libgtk-3-common libguava-java libguice-java libhamcrest-java libharfbuzz0b libhtsjdk-java libhttpclient-java libhttpcore-java libicu72 libidn2-0 libinchi1.07 libistack-commons-java libitext5-java libjackson2-annotations-java libjackson2-core-java libjackson2-databind-java libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjgrapht-java libjgraphx-java libjheaps-java libjmol-java libjni-inchi-java libjni-inchi-jni libjpeg62-turbo libjson-java libjson-simple-java libjsoup-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblerc4 libllvm19 liblog4j1.2-java libmaven-archiver-java libmaven-compiler-plugin-java libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java libmaven-resolver-java libmaven-shared-incremental-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto16 libmbedtls21 libmbedx509-7 libmmtf-java libmsgpack-java libnaga-java libncbi-ngs3 libncbi-vdb3 libncursesw6 libngs-java libngs-jni libnspr4 libnss3 libopentest4j-java libopentest4j-reporting-java libp11-kit0 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libpicocli-java libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java libplexus-component-annotations-java libplexus-container-default-java libplexus-interpolation-java libplexus-io-java libplexus-languages-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16t64 libproc2-0 libqdox2-java librelaxng-datatype-java librhino-java librngom-java libsensors-config libsensors5 libsharpyuv0 libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libsnpeff-java libsqlite3-0 libstax-ex-java libstreambuffer-java libsystemd-shared libtasn1-6 libthai-data libthai0 libtiff6 libtrove3-java libtxw2-java libunistring5 libunivocity-parsers-java libvecmath-java libvulkan1 libwagon-http-java libwagon-provider-api-java libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxbean-reflect-java libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxom-java libxrandr2 libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java libz3-4 mesa-libgallium ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless openssl procps shared-mime-info systemd systemd-sysv x11-common xkb-data Suggested packages: liblocale-gettext-perl perl cron quota adwaita-icon-theme-legacy ant-doc default-jdk | java-compiler | java-sdk antlr javacc junit jython libbcel-java libbsf-java libcommons-net-java libmail-java libjaxp1.3-java libjdepend-java libjsch-java liboro-java libregexp-java libxalan2-java alsa-utils libasound2-plugins libatinject-jsr330-api-java-doc libbiojava6-java-doc libel-api-java colord libcommons-collections3-java-doc libcommons-collections4-java-doc libcommons-lang-java-doc libavalon-framework-java libexcalibur-logkit-java cups-common libdistlib-java-doc libmsv-java libxpp2-java libxpp3-java libjdom1-java low-memory-monitor gnutls-bin libgoogle-gson-java-doc krb5-doc krb5-user gvfs picard-tools python3 libbcpkix-java libbcprov-java libxml-security-java libjackson2-annotations-java-doc libjmol-java-doc libjson-simple-doc libjsoup-java-doc libjsr305-java-doc liblcms2-utils liblog4j1.2-java-doc libmaven-file-management-java-doc liblogback-java libmmtf-java-doc libngs-java-doc libcryptsetup12 libtss2-rc0t64 pciutils pcscd libeclipse-jdt-core-java libplexus-utils2-java-doc rhino lm-sensors testng libsnpeff-java-doc libarchive13t64 libbpf1 libdw1t64 libfido2-1 libgcrypt20 libip4tc2 libpwquality1 libqrencode4 libxerces2-java-doc libxml-commons-resolver1.1-java-doc libxom-java-doc libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic vcfanno systemd-container systemd-homed systemd-userdbd systemd-boot systemd-resolved systemd-repart libtss2-tcti-device0 polkitd Recommended packages: librsvg2-common alsa-ucm-conf alsa-topology-conf at-spi2-core libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libgtk-3-bin krb5-locales libjansi-java libgpm2 libkmod2 mesa-vulkan-drivers | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra psmisc linux-sysctl-defaults systemd-timesyncd | time-daemon systemd-cryptsetup libnss-systemd The following NEW packages will be installed: adduser adwaita-icon-theme ant ant-optional at-spi2-common ca-certificates ca-certificates-java dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jre default-jre-headless fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme java-common junit4 junit5 libactivation-java libantlr4-runtime-java libaopalliance-java libapache-pom-java libapfloat-java libapiguardian-java libapparmor1 libargs4j-java libasm-java libasound2-data libasound2t64 libatinject-jsr330-api-java libatk-bridge2.0-0t64 libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libbiojava6-java libbrotli1 libcairo-gobject2 libcairo2 libcdi-api-java libcharts4j-java libciftools-java libcloudproviders0 libcodemodel-java libcolord2 libcommons-beanutils-java libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-exec-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-math-java libcommons-math3-java libcommons-parent-java libcommons-text-java libcups2t64 libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdistlib-java libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libelf1t64 libepoxy0 liberror-prone-java libexec-maven-plugin-java libexpat1 libezmorph-java libfastinfoset-java libfastutil-java libffi8 libfontconfig1 libfreemarker-java libfreetype6 libfribidi0 libgbm1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0t64 libglvnd0 libglx-mesa0 libglx0 libgnutls30t64 libgoogle-gson-java libgraphite2-3 libgssapi-krb5-2 libgtk-3-0t64 libgtk-3-common libguava-java libguice-java libhamcrest-java libharfbuzz0b libhtsjdk-java libhttpclient-java libhttpcore-java libicu72 libidn2-0 libinchi1.07 libistack-commons-java libitext5-java libjackson2-annotations-java libjackson2-core-java libjackson2-databind-java libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjgrapht-java libjgraphx-java libjheaps-java libjmol-java libjni-inchi-java libjni-inchi-jni libjpeg62-turbo libjson-java libjson-simple-java libjsoup-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblerc4 libllvm19 liblog4j1.2-java libmaven-archiver-java libmaven-compiler-plugin-java libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java libmaven-resolver-java libmaven-shared-incremental-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto16 libmbedtls21 libmbedx509-7 libmmtf-java libmsgpack-java libnaga-java libncbi-ngs3 libncbi-vdb3 libncursesw6 libngs-java libngs-jni libnspr4 libnss3 libopentest4j-java libopentest4j-reporting-java libp11-kit0 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libpicocli-java libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java libplexus-component-annotations-java libplexus-container-default-java libplexus-interpolation-java libplexus-io-java libplexus-languages-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16t64 libproc2-0 libqdox2-java librelaxng-datatype-java librhino-java librngom-java libsensors-config libsensors5 libsharpyuv0 libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libsnpeff-java libsqlite3-0 libstax-ex-java libstreambuffer-java libsystemd-shared libtasn1-6 libthai-data libthai0 libtiff6 libtrove3-java libtxw2-java libunistring5 libunivocity-parsers-java libvecmath-java libvulkan1 libwagon-http-java libwagon-provider-api-java libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxbean-reflect-java libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxom-java libxrandr2 libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java libz3-4 mesa-libgallium ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless openssl procps shared-mime-info snpeff systemd systemd-sysv x11-common xkb-data 0 upgraded, 285 newly installed, 0 to remove and 0 not upgraded. Need to get 228 MB of archives. After this operation, 735 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libsystemd-shared amd64 257.3-1 [2138 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libapparmor1 amd64 3.1.7-4 [42.0 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 systemd amd64 257.3-1 [3092 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 systemd-sysv amd64 257.3-1 [61.4 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libdbus-1-3 amd64 1.16.0-1 [177 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 dbus-bin amd64 1.16.0-1 [78.9 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 dbus-session-bus-common all 1.16.0-1 [51.1 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 dbus-daemon amd64 1.16.0-1 [157 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 adduser all 3.137 [140 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 dbus-system-bus-common all 1.16.0-1 [52.2 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 dbus amd64 1.16.0-1 [70.5 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5+20250125-2 [135 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20241223 [164 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libpam-systemd amd64 257.3-1 [293 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [311 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-16 [9296 B] Get:21 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.83.3-2 [1511 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.46-4 [284 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-2 [140 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 gtk-update-icon-cache amd64 4.17.4+ds-4 [51.3 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 hicolor-icon-theme all 0.18-2 [11.8 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 adwaita-icon-theme all 47.0-2 [463 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 java-common all 0.76 [6776 B] Get:40 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 libnspr4 amd64 2:4.36-1 [110 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 libnss3 amd64 2:3.108-1 [1393 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libpcsclite1 amd64 2.3.1-1 [56.0 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 openjdk-21-jre-headless amd64 21.0.6+7-1 [41.7 MB] Get:46 http://deb.debian.org/debian trixie/main amd64 default-jre-headless amd64 2:1.21-76 [3192 B] Get:47 http://deb.debian.org/debian trixie/main amd64 ant all 1.10.15-1 [2163 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 ant-optional all 1.10.15-1 [456 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 at-spi2-common all 2.55.2-1 [170 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 dbus-user-session amd64 1.16.0-1 [51.0 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 libdconf1 amd64 0.40.0-5 [41.8 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 dconf-service amd64 0.40.0-5 [32.4 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 dconf-gsettings-backend amd64 0.40.0-5 [28.6 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 libatk1.0-0t64 amd64 2.55.2-1 [51.4 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 libatspi2.0-0t64 amd64 2.55.2-1 [77.0 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 libatk-bridge2.0-0t64 amd64 2.55.2-1 [68.1 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 libcairo-gobject2 amd64 1.18.2-2 [130 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 libcloudproviders0 amd64 0.3.6-1+b1 [29.2 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 libcolord2 amd64 1.4.7-1+b2 [140 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 libavahi-common-data amd64 0.8-16 [112 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 libavahi-common3 amd64 0.8-16 [44.2 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 libavahi-client3 amd64 0.8-16 [48.4 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get:83 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:84 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get:88 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:89 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 libcups2t64 amd64 2.4.10-2+b1 [251 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 libepoxy0 amd64 1.5.10-2 [193 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB] Get:96 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-2 [463 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.56.1-1 [226 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [55.3 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [35.8 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 libwayland-client0 amd64 1.23.1-1 [26.5 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 libwayland-cursor0 amd64 1.23.1-1 [11.4 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 libwayland-egl1 amd64 1.23.1-1 [5452 B] Get:106 http://deb.debian.org/debian trixie/main amd64 libxcomposite1 amd64 1:0.4.6-1 [16.3 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 libxfixes3 amd64 1:6.0.0-2+b4 [20.2 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 libxcursor1 amd64 1:1.2.3-1 [39.7 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 libxdamage1 amd64 1:1.1.6-1+b2 [15.5 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 libxinerama1 amd64 2:1.1.4-3+b3 [16.0 kB] Get:111 http://deb.debian.org/debian trixie/main amd64 xkb-data all 2.42-1 [790 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 libxkbcommon0 amd64 1.7.0-2 [113 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 libxrandr2 amd64 2:1.5.4-1+b3 [36.3 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 libgtk-3-common all 3.24.48-4 [4873 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 libgtk-3-0t64 amd64 3.24.48-4 [2767 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get:118 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 libglapi-mesa amd64 24.3.4-3 [38.5 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [241 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get:124 http://deb.debian.org/debian trixie/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b4 [19.3 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 libdrm-intel1 amd64 2.4.123-1 [63.7 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 libdrm-radeon1 amd64 2.4.123-1 [22.3 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get:132 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:133 http://deb.debian.org/debian trixie/main amd64 libllvm19 amd64 1:19.1.7-1+b1 [26.0 MB] Get:134 http://deb.debian.org/debian trixie/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get:135 http://deb.debian.org/debian trixie/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get:137 http://deb.debian.org/debian trixie/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get:138 http://deb.debian.org/debian trixie/main amd64 libxshmfence1 amd64 1.3-1+b3 [8852 B] Get:139 http://deb.debian.org/debian trixie/main amd64 mesa-libgallium amd64 24.3.4-3 [9492 kB] Get:140 http://deb.debian.org/debian trixie/main amd64 libwayland-server0 amd64 1.23.1-1 [34.0 kB] Get:141 http://deb.debian.org/debian trixie/main amd64 libgbm1 amd64 24.3.4-3 [43.7 kB] Get:142 http://deb.debian.org/debian trixie/main amd64 libvulkan1 amd64 1.4.304.0-1 [129 kB] Get:143 http://deb.debian.org/debian trixie/main amd64 libgl1-mesa-dri amd64 24.3.4-3 [45.2 kB] Get:144 http://deb.debian.org/debian trixie/main amd64 libglx-mesa0 amd64 24.3.4-3 [143 kB] Get:145 http://deb.debian.org/debian trixie/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get:146 http://deb.debian.org/debian trixie/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get:147 http://deb.debian.org/debian trixie/main amd64 libasound2-data all 1.2.13-1 [21.1 kB] Get:148 http://deb.debian.org/debian trixie/main amd64 libasound2t64 amd64 1.2.13-1+b1 [373 kB] Get:149 http://deb.debian.org/debian trixie/main amd64 libgif7 amd64 5.2.2-1+b1 [44.2 kB] Get:150 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24 [217 kB] Get:151 http://deb.debian.org/debian trixie/main amd64 libxtst6 amd64 2:1.2.5-1 [25.8 kB] Get:152 http://deb.debian.org/debian trixie/main amd64 openjdk-21-jre amd64 21.0.6+7-1 [205 kB] Get:153 http://deb.debian.org/debian trixie/main amd64 default-jre amd64 2:1.21-76 [1068 B] Get:154 http://deb.debian.org/debian trixie/main amd64 libhamcrest-java all 2.2-2 [121 kB] Get:155 http://deb.debian.org/debian trixie/main amd64 junit4 all 4.13.2-5 [350 kB] Get:156 http://deb.debian.org/debian trixie/main amd64 libapiguardian-java all 1.1.2-1 [4656 B] Get:157 http://deb.debian.org/debian trixie/main amd64 libopentest4j-java all 1.2.0-4 [9516 B] Get:158 http://deb.debian.org/debian trixie/main amd64 libopentest4j-reporting-java all 0.1.0-M1-2 [49.0 kB] Get:159 http://deb.debian.org/debian trixie/main amd64 libpicocli-java all 4.6.2-2 [390 kB] Get:160 http://deb.debian.org/debian trixie/main amd64 libunivocity-parsers-java all 2.9.1-1 [397 kB] Get:161 http://deb.debian.org/debian trixie/main amd64 junit5 all 5.10.3-1 [2459 kB] Get:162 http://deb.debian.org/debian trixie/main amd64 libactivation-java all 1.2.0-2 [84.7 kB] Get:163 http://deb.debian.org/debian trixie/main amd64 libantlr4-runtime-java all 4.9.2-3 [318 kB] Get:164 http://deb.debian.org/debian trixie/main amd64 libaopalliance-java all 20070526-7 [8572 B] Get:165 http://deb.debian.org/debian trixie/main amd64 libapache-pom-java all 33-2 [5852 B] Get:166 http://deb.debian.org/debian trixie/main amd64 libapfloat-java all 1.14.0-2 [725 kB] Get:167 http://deb.debian.org/debian trixie/main amd64 libargs4j-java all 2.33-2 [138 kB] Get:168 http://deb.debian.org/debian trixie/main amd64 libasm-java all 9.7.1-1 [391 kB] Get:169 http://deb.debian.org/debian trixie/main amd64 libatinject-jsr330-api-java all 1.0+ds1-6 [5112 B] Get:170 http://deb.debian.org/debian trixie/main amd64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get:171 http://deb.debian.org/debian trixie/main amd64 libgoogle-gson-java all 2.10.1-1 [262 kB] Get:172 http://deb.debian.org/debian trixie/main amd64 libciftools-java all 6.0.0-1 [2211 kB] Get:173 http://deb.debian.org/debian trixie/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:174 http://deb.debian.org/debian trixie/main amd64 libcommons-codec-java all 1.17.1-1 [303 kB] Get:175 http://deb.debian.org/debian trixie/main amd64 libcommons-math-java all 2.2-9 [933 kB] Get:176 http://deb.debian.org/debian trixie/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get:177 http://deb.debian.org/debian trixie/main amd64 libjsr305-java all 0.1~+svn49-12 [26.6 kB] Get:178 http://deb.debian.org/debian trixie/main amd64 libguava-java all 32.0.1-1 [2708 kB] Get:179 http://deb.debian.org/debian trixie/main amd64 libitext5-java all 5.5.13.3-4 [2667 kB] Get:180 http://deb.debian.org/debian trixie/main amd64 libjackson2-annotations-java all 2.14.0-1 [68.8 kB] Get:181 http://deb.debian.org/debian trixie/main amd64 libjackson2-core-java all 2.14.1-1 [447 kB] Get:182 http://deb.debian.org/debian trixie/main amd64 libjackson2-databind-java all 2.14.0+ds-1 [1532 kB] Get:183 http://deb.debian.org/debian trixie/main amd64 libjaxb-api-java all 2.3.1-1 [119 kB] Get:184 http://deb.debian.org/debian trixie/main amd64 libjaxen-java all 1.1.6-5 [214 kB] Get:185 http://deb.debian.org/debian trixie/main amd64 libdom4j-java all 2.1.4-1 [312 kB] Get:186 http://deb.debian.org/debian trixie/main amd64 libcommons-io-java all 2.18.0-1 [509 kB] Get:187 http://deb.debian.org/debian trixie/main amd64 libslf4j-java all 1.7.32-1 [144 kB] Get:188 http://deb.debian.org/debian trixie/main amd64 libmaven-shared-utils-java all 3.4.2-1 [137 kB] Get:189 http://deb.debian.org/debian trixie/main amd64 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get:190 http://deb.debian.org/debian trixie/main amd64 libguice-java all 5.1.0-1 [932 kB] Get:191 http://deb.debian.org/debian trixie/main amd64 libmaven-parent-java all 43-2 [6252 B] Get:192 http://deb.debian.org/debian trixie/main amd64 libcommons-lang3-java all 3.17.0-1 [641 kB] Get:193 http://deb.debian.org/debian trixie/main amd64 libplexus-utils2-java all 3.4.2-1 [258 kB] Get:194 http://deb.debian.org/debian trixie/main amd64 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get:195 http://deb.debian.org/debian trixie/main amd64 libmaven-resolver-java all 1.9.22-1 [729 kB] Get:196 http://deb.debian.org/debian trixie/main amd64 libplexus-cipher-java all 2.0-1 [14.9 kB] Get:197 http://deb.debian.org/debian trixie/main amd64 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get:198 http://deb.debian.org/debian trixie/main amd64 libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get:199 http://deb.debian.org/debian trixie/main amd64 libplexus-interpolation-java all 1.27-1 [76.8 kB] Get:200 http://deb.debian.org/debian trixie/main amd64 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get:201 http://deb.debian.org/debian trixie/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-5 [8444 B] Get:202 http://deb.debian.org/debian trixie/main amd64 libcdi-api-java all 1.2-4 [55.3 kB] Get:203 http://deb.debian.org/debian trixie/main amd64 libsisu-inject-java all 0.3.5-1 [352 kB] Get:204 http://deb.debian.org/debian trixie/main amd64 libsisu-plexus-java all 0.3.5-1 [183 kB] Get:205 http://deb.debian.org/debian trixie/main amd64 libmaven3-core-java all 3.9.9-1 [1661 kB] Get:206 http://deb.debian.org/debian trixie/main amd64 libmaven-shared-io-java all 3.0.0-4 [33.2 kB] Get:207 http://deb.debian.org/debian trixie/main amd64 libmaven-file-management-java all 3.0.0-2 [35.1 kB] Get:208 http://deb.debian.org/debian trixie/main amd64 libcommons-compress-java all 1.27.1-2 [641 kB] Get:209 http://deb.debian.org/debian trixie/main amd64 libplexus-io-java all 3.3.1-2 [65.3 kB] Get:210 http://deb.debian.org/debian trixie/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB] Get:211 http://deb.debian.org/debian trixie/main amd64 libsnappy-jni amd64 1.1.10.7-1 [6492 B] Get:212 http://deb.debian.org/debian trixie/main amd64 libsnappy-java all 1.1.10.7-1 [87.6 kB] Get:213 http://deb.debian.org/debian trixie/main amd64 libxz-java all 1.9-1 [143 kB] Get:214 http://deb.debian.org/debian trixie/main amd64 libplexus-archiver-java all 4.6.1-1 [187 kB] Get:215 http://deb.debian.org/debian trixie/main amd64 libhttpcore-java all 4.4.16-1 [636 kB] Get:216 http://deb.debian.org/debian trixie/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get:217 http://deb.debian.org/debian trixie/main amd64 libhttpclient-java all 4.5.14-1 [1247 kB] Get:218 http://deb.debian.org/debian trixie/main amd64 libjsoup-java all 1.15.3-1 [431 kB] Get:219 http://deb.debian.org/debian trixie/main amd64 libwagon-http-java all 3.5.3-1 [49.5 kB] Get:220 http://deb.debian.org/debian trixie/main amd64 libistack-commons-java all 3.0.6-5 [145 kB] Get:221 http://deb.debian.org/debian trixie/main amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-11 [164 kB] Get:222 http://deb.debian.org/debian trixie/main amd64 librelaxng-datatype-java all 1.0+ds1-4 [11.8 kB] Get:223 http://deb.debian.org/debian trixie/main amd64 librngom-java all 2.3.0.1-11 [292 kB] Get:224 http://deb.debian.org/debian trixie/main amd64 libxsom-java all 2.3.0.1-11 [401 kB] Get:225 http://deb.debian.org/debian trixie/main amd64 libtxw2-java all 2.3.0.1-11 [134 kB] Get:226 http://deb.debian.org/debian trixie/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get:227 http://deb.debian.org/debian trixie/main amd64 libdtd-parser-java all 1.2-1 [64.9 kB] Get:228 http://deb.debian.org/debian trixie/main amd64 libstax-ex-java all 1.7.8-3 [40.9 kB] Get:229 http://deb.debian.org/debian trixie/main amd64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] Get:230 http://deb.debian.org/debian trixie/main amd64 libfastinfoset-java all 1.2.12-4 [347 kB] Get:231 http://deb.debian.org/debian trixie/main amd64 libjaxb-java all 2.3.0.1-11 [1980 kB] Get:232 http://deb.debian.org/debian trixie/main amd64 libmaven-archiver-java all 3.6.2-1 [26.1 kB] Get:233 http://deb.debian.org/debian trixie/main amd64 libmaven-jar-plugin-java all 3.3.0-2 [24.0 kB] Get:234 http://deb.debian.org/debian trixie/main amd64 libcommons-text-java all 1.12.0-1 [222 kB] Get:235 http://deb.debian.org/debian trixie/main amd64 libfastutil-java all 8.5.15+dfsg-1 [20.0 MB] Get:236 http://deb.debian.org/debian trixie/main amd64 libjheaps-java all 0.14-2 [144 kB] Get:237 http://deb.debian.org/debian trixie/main amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] Get:238 http://deb.debian.org/debian trixie/main amd64 libxerces2-java all 2.12.2-1 [1440 kB] Get:239 http://deb.debian.org/debian trixie/main amd64 libjgraphx-java all 2.1.0.7-5 [809 kB] Get:240 http://deb.debian.org/debian trixie/main amd64 libjgrapht-java all 1.5.2-1 [1610 kB] Get:241 http://deb.debian.org/debian trixie/main amd64 libinchi1.07 amd64 1.07.2+dfsg-1 [556 kB] Get:242 http://deb.debian.org/debian trixie/main amd64 libjni-inchi-jni amd64 0.8+dfsg-8 [9188 B] Get:243 http://deb.debian.org/debian trixie/main amd64 libcommons-exec-java all 1.3-2 [48.1 kB] Get:244 http://deb.debian.org/debian trixie/main amd64 libexec-maven-plugin-java all 3.1.0-2 [66.7 kB] Get:245 http://deb.debian.org/debian trixie/main amd64 libmaven-shared-incremental-java all 1.1-6 [9916 B] Get:246 http://deb.debian.org/debian trixie/main amd64 libcommons-lang-java all 2.6-10 [273 kB] Get:247 http://deb.debian.org/debian trixie/main amd64 libxbean-reflect-java all 4.5-9 [132 kB] Get:248 http://deb.debian.org/debian trixie/main amd64 libplexus-container-default-java all 2.1.1-1 [193 kB] Get:249 http://deb.debian.org/debian trixie/main amd64 libplexus-compiler-java all 2.13.0-1 [99.5 kB] Get:250 http://deb.debian.org/debian trixie/main amd64 libqdox2-java all 2.0.3-1 [296 kB] Get:251 http://deb.debian.org/debian trixie/main amd64 libplexus-languages-java all 1.1.1-2 [47.3 kB] Get:252 http://deb.debian.org/debian trixie/main amd64 libmaven-compiler-plugin-java all 3.13.0-1 [78.8 kB] Get:253 http://deb.debian.org/debian trixie/main amd64 liblog4j1.2-java all 1.2.17-11 [444 kB] Get:254 http://deb.debian.org/debian trixie/main amd64 libjni-inchi-java all 0.8+dfsg-8 [33.6 kB] Get:255 http://deb.debian.org/debian trixie/main amd64 libnaga-java all 3.0+svn80-5 [43.5 kB] Get:256 http://deb.debian.org/debian trixie/main amd64 libjmol-java all 16.2.33+dfsg-1 [10.4 MB] Get:257 http://deb.debian.org/debian trixie/main amd64 libjson-simple-java all 2.3.0-2 [61.7 kB] Get:258 http://deb.debian.org/debian trixie/main amd64 libmsgpack-java all 0.9.6-1 [161 kB] Get:259 http://deb.debian.org/debian trixie/main amd64 libmmtf-java all 1.0.11-1 [187 kB] Get:260 http://deb.debian.org/debian trixie/main amd64 libvecmath-java all 1.5.2-7 [97.0 kB] Get:261 http://deb.debian.org/debian trixie/main amd64 libbiojava6-java all 6.1.0+dfsg-5 [5359 kB] Get:262 http://deb.debian.org/debian trixie/main amd64 libcharts4j-java all 1.3-4 [162 kB] Get:263 http://deb.debian.org/debian trixie/main amd64 libcommons-collections3-java all 3.2.2-3 [530 kB] Get:264 http://deb.debian.org/debian trixie/main amd64 libcommons-beanutils-java all 1.9.4-2 [233 kB] Get:265 http://deb.debian.org/debian trixie/main amd64 libcommons-collections4-java all 4.4-2 [682 kB] Get:266 http://deb.debian.org/debian trixie/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get:267 http://deb.debian.org/debian trixie/main amd64 libcommons-math3-java all 3.6.1-4 [2040 kB] Get:268 http://deb.debian.org/debian trixie/main amd64 libdistlib-java all 1.0-5 [72.5 kB] Get:269 http://deb.debian.org/debian trixie/main amd64 libezmorph-java all 1.0.6-4 [75.9 kB] Get:270 http://deb.debian.org/debian trixie/main amd64 libfreemarker-java all 2.3.32-2 [1546 kB] Get:271 http://deb.debian.org/debian trixie/main amd64 libxom-java all 1.3.9-1 [174 kB] Get:272 http://deb.debian.org/debian trixie/main amd64 libjson-java all 3.1.0+dfsg-2 [142 kB] Get:273 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB] Get:274 http://deb.debian.org/debian trixie/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB] Get:275 http://deb.debian.org/debian trixie/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB] Get:276 http://deb.debian.org/debian trixie/main amd64 ncbi-vdb-data all 3.0.9+dfsg-2 [74.0 kB] Get:277 http://deb.debian.org/debian trixie/main amd64 libncbi-vdb3 amd64 3.0.9+dfsg-2 [1189 kB] Get:278 http://deb.debian.org/debian trixie/main amd64 libncbi-ngs3 amd64 3.0.9+dfsg-7+b2 [156 kB] Get:279 http://deb.debian.org/debian trixie/main amd64 libngs-jni amd64 3.0.9+dfsg-7+b2 [25.9 kB] Get:280 http://deb.debian.org/debian trixie/main amd64 libngs-java amd64 3.0.9+dfsg-7+b2 [112 kB] Get:281 http://deb.debian.org/debian trixie/main amd64 librhino-java all 1.7.15-1 [1382 kB] Get:282 http://deb.debian.org/debian trixie/main amd64 libhtsjdk-java all 4.1.3+dfsg-2 [1841 kB] Get:283 http://deb.debian.org/debian trixie/main amd64 libtrove3-java all 3.0.3-5 [2146 kB] Get:284 http://deb.debian.org/debian trixie/main amd64 libsnpeff-java all 5.2.f+dfsg-1 [2156 kB] Get:285 http://deb.debian.org/debian trixie/main amd64 snpeff all 5.2.f+dfsg-1 [7244 B] Preconfiguring packages ... Fetched 228 MB in 1s (226 MB/s) Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5030 files and directories currently installed.) Preparing to unpack .../libsystemd-shared_257.3-1_amd64.deb ... Unpacking libsystemd-shared:amd64 (257.3-1) ... Selecting previously unselected package libapparmor1:amd64. Preparing to unpack .../libapparmor1_3.1.7-4_amd64.deb ... Unpacking libapparmor1:amd64 (3.1.7-4) ... Setting up libsystemd-shared:amd64 (257.3-1) ... Selecting previously unselected package systemd. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5043 files and directories currently installed.) Preparing to unpack .../systemd_257.3-1_amd64.deb ... Unpacking systemd (257.3-1) ... Setting up libapparmor1:amd64 (3.1.7-4) ... Setting up systemd (257.3-1) ... Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' → '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' → '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' → '/usr/lib/systemd/system/systemd-pstore.service'. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. [ESC][0;1;39m/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.[ESC][0m [ESC][0;1;31m"/home" already exists and is not a directory.[ESC][0m Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5984 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_257.3-1_amd64.deb ... Unpacking systemd-sysv (257.3-1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../1-libdbus-1-3_1.16.0-1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.16.0-1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../2-dbus-bin_1.16.0-1_amd64.deb ... Unpacking dbus-bin (1.16.0-1) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6127 files and directories currently installed.) Preparing to unpack .../000-dbus-system-bus-common_1.16.0-1_all.deb ... Unpacking dbus-system-bus-common (1.16.0-1) ... Selecting previously unselected package dbus. Preparing to unpack .../001-dbus_1.16.0-1_amd64.deb ... Unpacking dbus (1.16.0-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../002-libncursesw6_6.5+20250125-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250125-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../003-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.4.1-1_amd64.deb ... Unpacking openssl (3.4.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package libpam-systemd:amd64. Preparing to unpack .../007-libpam-systemd_257.3-1_amd64.deb ... Unpacking libpam-systemd:amd64 (257.3-1) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../008-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ... 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Setting up libjackson2-databind-java (2.14.0+ds-1) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b4) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.5-1) ... Setting up libglib2.0-0t64:amd64 (2.83.3-2) ... Setting up libmbedx509-7:amd64 (3.6.2-3) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b4) ... Setting up dbus (1.16.0-1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-5+b2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b3) ... Setting up libstreambuffer-java (1.5.4-1.1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libxrandr2:amd64 (2:1.5.4-1+b3) ... Setting up libcommons-collections4-java (4.4-2) ... Setting up libcommons-lang3-java (3.17.0-1) ... Setting up libmbedtls21:amd64 (3.6.2-3) ... Setting up librngom-java (2.3.0.1-11) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libjni-inchi-jni (0.8+dfsg-8) ... Setting up libjgraphx-java (2.1.0.7-5) ... Setting up libwayland-cursor0:amd64 (1.23.1-1) ... Setting up libpam-systemd:amd64 (257.3-1) ... Setting up libcommons-beanutils-java (1.9.4-2) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up libharfbuzz0b:amd64 (10.2.0-1) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-2) ... Setting up libsnappy-java (1.1.10.7-1) ... Setting up libfontconfig1:amd64 (2.15.0-2) ... Setting up libxsom-java (2.3.0.1-11) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libcommons-codec-java (1.17.1-1) ... Setting up libavahi-client3:amd64 (0.8-16) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up gtk-update-icon-cache (4.17.4+ds-4) ... Setting up fontconfig (2.15.0-2) ... Regenerating fonts cache... done. Setting up libatk1.0-0t64:amd64 (2.55.2-1) ... Setting up openjdk-21-jre-headless:amd64 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libxi6:amd64 (2:1.8.2-1) ... Setting up libcommons-io-java (2.18.0-1) ... Setting up libdrm-radeon1:amd64 (2.4.123-1) ... Setting up libxtst6:amd64 (2:1.2.5-1) ... Setting up libdistlib-java (1.0-5) ... Setting up libxcursor1:amd64 (1:1.2.3-1) ... Setting up libpango-1.0-0:amd64 (1.56.1-1) ... Setting up libdrm-intel1:amd64 (2.4.123-1) ... Setting up libncbi-vdb3:amd64 (3.0.9+dfsg-2) ... Setting up libcloudproviders0:amd64 (0.3.6-1+b1) ... Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libcolord2:amd64 (1.4.7-1+b2) ... Setting up libdconf1:amd64 (0.40.0-5) ... Setting up dbus-user-session (1.16.0-1) ... Setting up libmaven-resolver-java (1.9.22-1) ... Setting up adwaita-icon-theme (47.0-2) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libatspi2.0-0t64:amd64 (2.55.2-1) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up libwagon-http-java (3.5.3-1) ... Setting up libcairo-gobject2:amd64 (1.18.2-2) ... Setting up libmaven-shared-utils-java (3.4.2-1) ... Setting up libfastinfoset-java (1.2.12-4) ... Setting up libpangoft2-1.0-0:amd64 (1.56.1-1) ... Setting up libcups2t64:amd64 (2.4.10-2+b1) ... Setting up libpangocairo-1.0-0:amd64 (1.56.1-1) ... Setting up libncbi-ngs3:amd64 (3.0.9+dfsg-7+b2) ... Setting up libatk-bridge2.0-0t64:amd64 (2.55.2-1) ... Setting up mesa-libgallium:amd64 (24.3.4-3) ... Setting up libngs-jni:amd64 (3.0.9+dfsg-7+b2) ... Setting up libplexus-io-java (3.3.1-2) ... Setting up libcommons-compress-java (1.27.1-2) ... Setting up libgbm1:amd64 (24.3.4-3) ... Setting up libgl1-mesa-dri:amd64 (24.3.4-3) ... Setting up dconf-service (0.40.0-5) ... Setting up libplexus-archiver-java (4.6.1-1) ... Setting up libngs-java:amd64 (3.0.9+dfsg-7+b2) ... Setting up libglx-mesa0:amd64 (24.3.4-3) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up dconf-gsettings-backend:amd64 (0.40.0-5) ... Setting up libmaven-archiver-java (3.6.2-1) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up libgtk-3-common (3.24.48-4) ... Setting up libgtk-3-0t64:amd64 (3.24.48-4) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libguava-java (32.0.1-1) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up libguice-java (5.1.0-1) ... Setting up libmaven3-core-java (3.9.9-1) ... Setting up libmaven-shared-incremental-java (1.1-6) ... Setting up libmaven-shared-io-java (3.0.0-4) ... Setting up libplexus-compiler-java (2.13.0-1) ... Setting up libmaven-compiler-plugin-java (3.13.0-1) ... Setting up libjni-inchi-java (0.8+dfsg-8) ... Setting up libmaven-file-management-java (3.0.0-2) ... Setting up libjmol-java (16.2.33+dfsg-1) ... Setting up libmaven-jar-plugin-java (3.3.0-2) ... Setting up libcommons-text-java (1.12.0-1) ... Setting up libmsgpack-java (0.9.6-1) ... Setting up libmmtf-java (1.0.11-1) ... Setting up libjgrapht-java (1.5.2-1) ... Processing triggers for libc-bin (2.40-6) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-21-jre:amd64 (21.0.6+7-1) ... Setting up ant (1.10.15-1) ... Setting up junit4 (4.13.2-5) ... Setting up default-jre-headless (2:1.21-76) ... Setting up default-jre (2:1.21-76) ... Setting up ant-optional (1.10.15-1) ... Setting up junit5 (5.10.3-1) ... Setting up libjson-java (3.1.0+dfsg-2) ... Setting up libhtsjdk-java (4.1.3+dfsg-2) ... Setting up libistack-commons-java (3.0.6-5) ... Setting up libcodemodel-java (2.6+jaxb2.3.0.1-11) ... Setting up libtxw2-java (2.3.0.1-11) ... Setting up libjaxb-java (2.3.0.1-11) ... Setting up libbiojava6-java (6.1.0+dfsg-5) ... Setting up libsnpeff-java (5.2.f+dfsg-1) ... Setting up snpeff (5.2.f+dfsg-1) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', '-y', 'install', 'snpeff'] 0m33.9s INFO: Running scripts post_install 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_install_exceptions'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_install_exceptions'] 0m33.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m34.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m34.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpdj674ye7 to sid 0m34.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m34.7s INFO: Running scripts pre_distupgrade 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_distupgrade_exceptions'] 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_distupgrade_exceptions'] 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', 'update'] 0m37.5s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7377 kB] Fetched 17.7 MB in 2s (9105 kB/s) Reading package lists... 0m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', 'update'] 0m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', '-yf', 'dist-upgrade'] 0m42.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libapt-pkg7.0 The following packages will be upgraded: adwaita-icon-theme apt bsdutils gcc-14-base libapparmor1 libatomic1 libblkid1 libc-bin libc6 libcap2 libgcc-s1 libhogweed6t64 libmount1 libncursesw6 libnettle8t64 libpcre2-8-0 libselinux1 libsemanage-common libsemanage2 libsmartcols1 libstdc++6 libtinfo6 libuuid1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 login login.defs mount ncurses-base ncurses-bin passwd util-linux 34 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 13.3 MB of archives. After this operation, 5409 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.4-4 [106 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.5+20250216-1 [439 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-17 [9316 B] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-17 [49.1 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-17 [72.7 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-17 [713 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.40-7 [2815 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.4-4 [36.5 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.4-4 [169 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.4-4 [200 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.4-4 [140 kB] Get:12 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.4-4 [1206 kB] Get:13 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.4-4 [156 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.45-1 [298 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.8-3 [84.6 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 2.9.30 [1104 kB] Get:17 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.30 [1440 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.40-7 [631 kB] Get:19 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.5+20250216-1 [273 kB] Get:20 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.40.4-4 [88.7 kB] Get:21 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.17.2-5 [186 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.8-1 [7720 B] Get:23 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.8-1 [94.4 kB] Get:24 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.17.2-5 [1234 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.73-4 [27.3 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.10.1-1 [305 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.10.1-1 [335 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-1 [136 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.5+20250216-1 [348 kB] Get:30 http://deb.debian.org/debian sid/main amd64 adwaita-icon-theme all 48~beta-3 [504 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libapparmor1 amd64 4.1.0~beta5-2 [43.3 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libwayland-client0 amd64 1.23.1-3 [26.8 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libwayland-cursor0 amd64 1.23.1-3 [11.9 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libwayland-egl1 amd64 1.23.1-3 [5860 B] Get:35 http://deb.debian.org/debian sid/main amd64 libwayland-server0 amd64 1.23.1-3 [34.4 kB] Preconfiguring packages ... Fetched 13.3 MB in 0s (114 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14912 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.4-4_amd64.deb ... Unpacking bsdutils (1:2.40.4-4) over (1:2.40.4-3) ... Setting up bsdutils (1:2.40.4-4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14912 files and directories currently installed.) Preparing to unpack .../libatomic1_14.2.0-17_amd64.deb ... Unpacking libatomic1:amd64 (14.2.0-17) over (14.2.0-16) ... Preparing to unpack .../gcc-14-base_14.2.0-17_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-17) over (14.2.0-16) ... Setting up gcc-14-base:amd64 (14.2.0-17) ... (Reading database ... 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Processing triggers for libc-bin (2.40-7) ... 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', '-yf', 'dist-upgrade'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m43.8s DUMP: 0e5a6447d24099b8907c084b892e5eed - 0m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'show', '--no-all-versions', 'snpeff'] 0m44.1s DUMP: Package: snpeff Version: 5.2.f+dfsg-1 Installed-Size: 21 Maintainer: Debian Med Packaging Team Architecture: all Depends: default-jre, libsnpeff-java (= 5.2.f+dfsg-1) Suggests: vcfanno Description-en: genetic variant annotation and effect prediction toolbox - tool "We are all different!" Geneticists agree to this. Even twins, who are said to be identical are on a molecular level only "mostly" identical. And even within the exact same individual, healthy cells acquire mutations such that we are all genetic mosaics. Changes to individual cells may be induced by environmental factors, e.g. like UV light, or happen sporadically as mishaps during cellular divisions. . Because there are so many genetic differences, and most have just no particular meaning for the development of a phenotype, i.e. most have no effect, it would be nice to have heuristics implemented that direct the researcher towards single-nucleotide polymorphisms (SNPs) that are most likely to be relevant. This identifies the gene that causes or contributes to, e.g, an illness, and possibly also genes that are affected by that change. Such mechanistic understanding of a disease, particularly when multiple genes and multiple genetic variants are contributing to the then "polygenic" phenotype, is at the onset of drug development and increasingly also for selecting individualized therapies in the clinic. . SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes). The inputs are predicted variants (SNPs, insertions, deletions and MNPs). The input file is usually obtained as a result of a sequencing experiment, and it is usually in variant call format (VCF). . SnpEff analyzes the input variants. It annotates the variants and calculates the effects they produce on known genes (e.g. amino acid changes). . This package contains the command line tool. Description-md5: 11554ad652b85830dc017ab4d21c9b35 Homepage: https://pcingola.github.io/SnpEff/ Section: java Priority: optional Filename: pool/main/s/snpeff/snpeff_5.2.f+dfsg-1_all.deb Size: 7244 MD5sum: 6286a5cf01979f5ce9ab90177363f6bc SHA256: 26d97606e5416e8173cc252dcf520f0f4d900af388c9296623b84838d5e03fcc 0m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'show', '--no-all-versions', 'snpeff'] 0m44.1s INFO: apt-cache knows about the following packages: snpeff 0m44.1s INFO: Running scripts pre_install 0m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_database-server'] 0m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_database-server'] 0m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_exceptions'] 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_exceptions'] 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_extras'] 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_extras'] 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_foreign_architecture'] 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_foreign_architecture'] 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'policy'] 0m44.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'policy'] 0m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'policy', 'snpeff'] 0m44.3s DUMP: snpeff: Installed: 5.2.f+dfsg-1 Candidate: 5.2.f+dfsg-1 Version table: *** 5.2.f+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'policy', 'snpeff'] 0m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', '-y', 'install', 'snpeff'] 0m45.0s DUMP: Reading package lists... Building dependency tree... Reading state information... snpeff is already the newest version (5.2.f+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', '-y', 'install', 'snpeff'] 0m45.0s INFO: Running scripts post_install 0m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_install_exceptions'] 0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_install_exceptions'] 0m45.1s INFO: Running scripts post_distupgrade 0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_distupgrade_exceptions'] 0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_distupgrade_exceptions'] 0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_distupgrade_zz_backports'] 0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_distupgrade_zz_backports'] 0m45.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m45.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m45.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m46.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m46.7s INFO: Running scripts pre_install 0m46.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_database-server'] 0m46.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_database-server'] 0m46.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_exceptions'] 0m46.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_exceptions'] 0m46.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_extras'] 0m46.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_extras'] 0m46.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'policy'] 0m46.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'policy'] 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'policy', 'snpeff'] 0m46.9s DUMP: snpeff: Installed: 5.2.f+dfsg-1 Candidate: 5.2.f+dfsg-1 Version table: *** 5.2.f+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-cache', 'policy', 'snpeff'] 0m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', '-y', 'install', 'snpeff=5.2.f+dfsg-1'] 0m47.5s DUMP: Reading package lists... Building dependency tree... Reading state information... snpeff is already the newest version (5.2.f+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', '-y', 'install', 'snpeff=5.2.f+dfsg-1'] 0m47.5s INFO: Running scripts post_install 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_install_exceptions'] 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_install_exceptions'] 0m47.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m48.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m49.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', '-ac', '--ignore-obsolete'] 0m52.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', '-ac', '--ignore-obsolete'] 0m52.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m52.0s DUMP: 0.15.6 0m52.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m52.0s INFO: Running adequate version 0.15.6 now. 0m52.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'snpeff'] 0m52.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'snpeff'] 0m52.1s INFO: Running scripts pre_remove 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_remove_exceptions'] 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/pre_remove_exceptions'] 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m55.9s DUMP: install ok installed adduser adduser 3.137 install ok installed adwaita-icon-theme adwaita-icon-theme 48~beta-3 install ok installed ant ant 1.10.15-1 install ok installed ant-optional ant-optional 1.10.15-1 install ok installed apt apt 2.9.30 install ok installed at-spi2-common at-spi2-common 2.55.2-1 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.4-4 install ok installed ca-certificates ca-certificates 20241223 install ok installed ca-certificates-java ca-certificates-java 20240118 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed dbus dbus 1.16.0-1 install ok installed dbus-bin dbus-bin 1.16.0-1 install ok installed dbus-daemon dbus-daemon 1.16.0-1 install ok installed dbus-session-bus-common dbus-session-bus-common 1.16.0-1 install ok installed dbus-system-bus-common dbus-system-bus-common 1.16.0-1 install ok installed dbus-user-session dbus-user-session 1.16.0-1 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.40.0-5 install ok installed dconf-service dconf-service 0.40.0-5 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed default-jre default-jre 2:1.21-76 install ok installed default-jre-headless default-jre-headless 2:1.21-76 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.15 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig fontconfig 2.15.0-2 install ok installed fontconfig-config fontconfig-config 2.15.0-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-17 install ok installed grep grep 3.11-4 install ok installed gtk-update-icon-cache gtk-update-icon-cache 4.17.4+ds-4 install ok installed gzip gzip 1.13-1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.18-2 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed java-common java-common 0.76 install ok installed junit4 junit4 4.13.2-5 install ok installed junit5 junit5 5.10.3-1 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libactivation-java libactivation-java 1.2.0-2 install ok installed libantlr4-runtime-java libantlr4-runtime-java 4.9.2-3 install ok installed libaopalliance-java libaopalliance-java 20070526-7 install ok installed libapache-pom-java libapache-pom-java 33-2 install ok installed libapfloat-java libapfloat-java 1.14.0-2 install ok installed libapiguardian-java libapiguardian-java 1.1.2-1 install ok installed libapparmor1:amd64 libapparmor1 4.1.0~beta5-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.29 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.30 install ok installed libargs4j-java libargs4j-java 2.33-2 install ok installed libasm-java libasm-java 9.7.1-1 install ok installed libasound2-data libasound2-data 1.2.13-1 install ok installed libasound2t64:amd64 libasound2t64 1.2.13-1+b1 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-6 install ok installed libatk-bridge2.0-0t64:amd64 libatk-bridge2.0-0t64 2.55.2-1 install ok installed libatk1.0-0t64:amd64 libatk1.0-0t64 2.55.2-1 install ok installed libatomic1:amd64 libatomic1 14.2.0-17 install ok installed libatspi2.0-0t64:amd64 libatspi2.0-0t64 2.55.2-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-16 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-16 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-16 install ok installed libbiojava6-java libbiojava6-java 6.1.0+dfsg-5 install ok installed libblkid1:amd64 libblkid1 2.40.4-4 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b6 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-7 install ok installed libc6:amd64 libc6 2.40-7 install ok installed libcairo-gobject2:amd64 libcairo-gobject2 1.18.2-2 install ok installed libcairo2:amd64 libcairo2 1.18.2-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.73-4 install ok installed libcdi-api-java libcdi-api-java 1.2-4 install ok installed libcharts4j-java libcharts4j-java 1.3-4 install ok installed libciftools-java libciftools-java 6.0.0-1 install ok installed libcloudproviders0:amd64 libcloudproviders0 0.3.6-1+b1 install ok installed libcodemodel-java libcodemodel-java 2.6+jaxb2.3.0.1-11 install ok installed libcolord2:amd64 libcolord2 1.4.7-1+b2 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcommons-beanutils-java libcommons-beanutils-java 1.9.4-2 install ok installed libcommons-cli-java libcommons-cli-java 1.6.0-1 install ok installed libcommons-codec-java libcommons-codec-java 1.17.1-1 install ok installed libcommons-collections3-java libcommons-collections3-java 3.2.2-3 install ok installed libcommons-collections4-java libcommons-collections4-java 4.4-2 install ok installed libcommons-compress-java libcommons-compress-java 1.27.1-2 install ok installed libcommons-exec-java libcommons-exec-java 1.3-2 install ok installed libcommons-io-java libcommons-io-java 2.18.0-1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-6 install ok installed libcommons-lang-java libcommons-lang-java 2.6-10 install ok installed libcommons-lang3-java libcommons-lang3-java 3.17.0-1 install ok installed libcommons-logging-java libcommons-logging-java 1.3.0-1 install ok installed libcommons-math-java libcommons-math-java 2.2-9 install ok installed libcommons-math3-java libcommons-math3-java 3.6.1-4 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcommons-text-java libcommons-text-java 1.12.0-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libcups2t64:amd64 libcups2t64 2.4.10-2+b1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.16.0-1 install ok installed libdconf1:amd64 libdconf1 0.40.0-5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libdeflate0:amd64 libdeflate0 1.23-1+b1 install ok installed libdistlib-java libdistlib-java 1.0-5 install ok installed libdom4j-java libdom4j-java 2.1.4-1 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.123-1 install ok installed libdrm-common libdrm-common 2.4.123-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.123-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.123-1 install ok installed libdrm2:amd64 libdrm2 2.4.123-1 install ok installed libdtd-parser-java libdtd-parser-java 1.2-1 install ok installed libedit2:amd64 libedit2 3.1-20250104-1 install ok installed libelf1t64:amd64 libelf1t64 0.192-4 install ok installed libepoxy0:amd64 libepoxy0 1.5.10-2 install ok installed liberror-prone-java liberror-prone-java 2.18.0-1 install ok installed libexec-maven-plugin-java libexec-maven-plugin-java 3.1.0-2 install ok installed libexpat1:amd64 libexpat1 2.6.4-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libezmorph-java libezmorph-java 1.0.6-4 install ok installed libfastinfoset-java libfastinfoset-java 1.2.12-4 install ok installed libfastutil-java libfastutil-java 8.5.15+dfsg-1 install ok installed libffi8:amd64 libffi8 3.4.7-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2 install ok installed libfreemarker-java libfreemarker-java 2.3.32-2 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1 install ok installed libgbm1:amd64 libgbm1 24.3.4-3 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-17 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.12+dfsg-2 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.12+dfsg-2 install ok installed libgeronimo-annotation-1.3-spec-java libgeronimo-annotation-1.3-spec-java 1.3-1 install ok installed libgeronimo-interceptor-3.0-spec-java libgeronimo-interceptor-3.0-spec-java 1.0.1-5 install ok installed libgif7:amd64 libgif7 5.2.2-1+b1 install ok installed libgl1:amd64 libgl1 1.7.0-1+b2 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 24.3.4-3 install ok installed libglapi-mesa:amd64 libglapi-mesa 24.3.4-3 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.83.3-2 install ok installed libglvnd0:amd64 libglvnd0 1.7.0-1+b2 install ok installed libglx-mesa0:amd64 libglx-mesa0 24.3.4-3 install ok installed libglx0:amd64 libglx0 1.7.0-1+b2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2 install ok installed libgoogle-gson-java libgoogle-gson-java 2.10.1-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-4 install ok installed libgtk-3-0t64:amd64 libgtk-3-0t64 3.24.48-4 install ok installed libgtk-3-common libgtk-3-common 3.24.48-4 install ok installed libguava-java libguava-java 32.0.1-1 install ok installed libguice-java libguice-java 5.1.0-1 install ok installed libhamcrest-java libhamcrest-java 2.2-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.2.0-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhtsjdk-java libhtsjdk-java 4.1.3+dfsg-2 install ok installed libhttpclient-java libhttpclient-java 4.5.14-1 install ok installed libhttpcore-java libhttpcore-java 4.4.16-1 install ok installed libicu72:amd64 libicu72 72.1-6 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed libinchi1.07 libinchi1.07 1.07.2+dfsg-1 install ok installed libistack-commons-java libistack-commons-java 3.0.6-5 install ok installed libitext5-java libitext5-java 5.5.13.3-4 install ok installed libjackson2-annotations-java libjackson2-annotations-java 2.14.0-1 install ok installed libjackson2-core-java libjackson2-core-java 2.14.1-1 install ok installed libjackson2-databind-java libjackson2-databind-java 2.14.0+ds-1 install ok installed libjaxb-api-java libjaxb-api-java 2.3.1-1 install ok installed libjaxb-java libjaxb-java 2.3.0.1-11 install ok installed libjaxen-java libjaxen-java 1.1.6-5 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjgrapht-java libjgrapht-java 1.5.2-1 install ok installed libjgraphx-java libjgraphx-java 2.1.0.7-5 install ok installed libjheaps-java libjheaps-java 0.14-2 install ok installed libjmol-java libjmol-java 16.2.33+dfsg-1 install ok installed libjni-inchi-java libjni-inchi-java 0.8+dfsg-8 install ok installed libjni-inchi-jni libjni-inchi-jni 0.8+dfsg-8 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3+b1 install ok installed libjson-java libjson-java 3.1.0+dfsg-2 install ok installed libjson-simple-java libjson-simple-java 2.3.0-2 install ok installed libjsoup-java libjsoup-java 1.15.3-1 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-12 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-4 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-4 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed libllvm19:amd64 libllvm19 1:19.1.7-1+b1 install ok installed liblog4j1.2-java liblog4j1.2-java 1.2.17-11 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-3 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmaven-archiver-java libmaven-archiver-java 3.6.2-1 install ok installed libmaven-compiler-plugin-java libmaven-compiler-plugin-java 3.13.0-1 install ok installed libmaven-file-management-java libmaven-file-management-java 3.0.0-2 install ok installed libmaven-jar-plugin-java libmaven-jar-plugin-java 3.3.0-2 install ok installed libmaven-parent-java libmaven-parent-java 43-2 install ok installed libmaven-resolver-java libmaven-resolver-java 1.9.22-1 install ok installed libmaven-shared-incremental-java libmaven-shared-incremental-java 1.1-6 install ok installed libmaven-shared-io-java libmaven-shared-io-java 3.0.0-4 install ok installed libmaven-shared-utils-java libmaven-shared-utils-java 3.4.2-1 install ok installed libmaven3-core-java libmaven3-core-java 3.9.9-1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.2-3 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.2-3 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.2-3 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmmtf-java libmmtf-java 1.0.11-1 install ok installed libmount1:amd64 libmount1 2.40.4-4 install ok installed libmsgpack-java libmsgpack-java 0.9.6-1 install ok installed libnaga-java libnaga-java 3.0+svn80-5 install ok installed libncbi-ngs3:amd64 libncbi-ngs3 3.0.9+dfsg-7+b2 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.0.9+dfsg-2 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libngs-java:amd64 libngs-java 3.0.9+dfsg-7+b2 install ok installed libngs-jni:amd64 libngs-jni 3.0.9+dfsg-7+b2 install ok installed libnspr4:amd64 libnspr4 2:4.36-1 install ok installed libnss3:amd64 libnss3 2:3.108-1 install ok installed libopentest4j-java libopentest4j-java 1.2.0-4 install ok installed libopentest4j-reporting-java libopentest4j-reporting-java 0.1.0-M1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam-systemd:amd64 libpam-systemd 257.3-1 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.56.1-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.56.1-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.56.1-1 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3+b3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libpcsclite1:amd64 libpcsclite1 2.3.1-1 install ok installed libpicocli-java libpicocli-java 4.6.2-2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libplexus-archiver-java libplexus-archiver-java 4.6.1-1 install ok installed libplexus-cipher-java libplexus-cipher-java 2.0-1 install ok installed libplexus-classworlds-java libplexus-classworlds-java 2.7.0-1 install ok installed libplexus-compiler-java libplexus-compiler-java 2.13.0-1 install ok installed libplexus-component-annotations-java libplexus-component-annotations-java 2.1.1-1 install ok installed libplexus-container-default-java libplexus-container-default-java 2.1.1-1 install ok installed libplexus-interpolation-java libplexus-interpolation-java 1.27-1 install ok installed libplexus-io-java libplexus-io-java 3.3.1-2 install ok installed libplexus-languages-java libplexus-languages-java 1.1.1-2 install ok installed libplexus-sec-dispatcher-java libplexus-sec-dispatcher-java 2.0-3 install ok installed libplexus-utils2-java libplexus-utils2-java 3.4.2-1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.46-4 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7 install ok installed libqdox2-java libqdox2-java 2.0.3-1 install ok installed librelaxng-datatype-java librelaxng-datatype-java 1.0+ds1-4 install ok installed librhino-java librhino-java 1.7.15-1 install ok installed librngom-java librngom-java 2.3.0.1-11 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.8-3 install ok installed libsemanage-common libsemanage-common 3.8-1 install ok installed libsemanage2:amd64 libsemanage2 3.8-1 install ok installed libsensors-config libsensors-config 1:3.6.0-10 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-10+b1 install ok installed libsepol2:amd64 libsepol2 3.8-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libsisu-inject-java libsisu-inject-java 0.3.5-1 install ok installed libsisu-plexus-java libsisu-plexus-java 0.3.5-1 install ok installed libslf4j-java libslf4j-java 1.7.32-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-4 install ok installed libsnappy-java libsnappy-java 1.1.10.7-1 install ok installed libsnappy-jni libsnappy-jni 1.1.10.7-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.1-1+b1 install ok installed libsnpeff-java libsnpeff-java 5.2.f+dfsg-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstax-ex-java libstax-ex-java 1.7.8-3 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-17 install ok installed libstreambuffer-java libstreambuffer-java 1.5.4-1.1 install ok installed libsystemd-shared:amd64 libsystemd-shared 257.3-1 install ok installed libsystemd0:amd64 libsystemd0 257.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2+b1 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-5 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-1 install ok installed libtrove3-java libtrove3-java 3.0.3-5 install ok installed libtxw2-java libtxw2-java 2.3.0.1-11 install ok installed libudev1:amd64 libudev1 257.3-1 install ok installed libunistring5:amd64 libunistring5 1.3-1 install ok installed libunivocity-parsers-java libunivocity-parsers-java 2.9.1-1 install ok installed libuuid1:amd64 libuuid1 2.40.4-4 install ok installed libvecmath-java libvecmath-java 1.5.2-7 install ok installed libvulkan1:amd64 libvulkan1 1.4.304.0-1 install ok installed libwagon-http-java libwagon-http-java 3.5.3-1 install ok installed libwagon-provider-api-java libwagon-provider-api-java 3.5.3-1 install ok installed libwayland-client0:amd64 libwayland-client0 1.23.1-3 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.23.1-3 install ok installed libwayland-egl1:amd64 libwayland-egl1 1.23.1-3 install ok installed libwayland-server0:amd64 libwayland-server0 1.23.1-3 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.10-2 install ok installed libx11-data libx11-data 2:1.8.10-2 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.10-2 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxbean-reflect-java libxbean-reflect-java 4.5-9 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.17.0-2+b1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.17.0-2+b1 install ok installed libxcb-present0:amd64 libxcb-present0 1.17.0-2+b1 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.17.0-2+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.17.0-2+b1 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.6-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.3-1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.6-1+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxerces2-java libxerces2-java 2.12.2-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2+b4 install ok installed libxi6:amd64 libxi6 2:1.8.2-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3+b3 install ok installed libxkbcommon0:amd64 libxkbcommon0 1.7.0-2 install ok installed libxml-commons-external-java libxml-commons-external-java 1.4.01-6 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-11 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.2+b1 install ok installed libxom-java libxom-java 1.3.9-1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.4-1+b3 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1+b4 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1+b3 install ok installed libxsom-java libxsom-java 2.3.0.1-11 install ok installed libxtst6:amd64 libxtst6 2:1.2.5-1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libxz-java libxz-java 1.9-1 install ok installed libz3-4:amd64 libz3-4 4.13.3-1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-4 install ok installed login.defs login.defs 1:4.17.2-5 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mesa-libgallium:amd64 mesa-libgallium 24.3.4-3 install ok installed mount mount 2.40.4-4 install ok installed ncbi-vdb-data ncbi-vdb-data 3.0.9+dfsg-2 install ok installed ncurses-base ncurses-base 6.5+20250216-1 install ok installed ncurses-bin ncurses-bin 6.5+20250216-1 install ok installed openjdk-21-jre:amd64 openjdk-21-jre 21.0.6+7-1 install ok installed openjdk-21-jre-headless:amd64 openjdk-21-jre-headless 21.0.6+7-1 install ok installed openssl openssl 3.4.1-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.2-5 install ok installed perl-base perl-base 5.40.1-2 install ok installed procps procps 2:4.0.4-7 install ok installed sed sed 4.9-2 install ok installed shared-mime-info shared-mime-info 2.4-5+b2 install ok installed snpeff snpeff 5.2.f+dfsg-1 install ok installed sqv sqv 1.2.1-6+b1 install ok installed systemd systemd 257.3-1 install ok installed systemd-sysv systemd-sysv 257.3-1 install ok installed sysvinit-utils sysvinit-utils 3.14-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-4 install ok installed x11-common x11-common 1:7.7+24 install ok installed xkb-data xkb-data 2.42-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', 'remove', 'adduser', 'adwaita-icon-theme', 'ant', 'ant-optional', 'at-spi2-common', 'ca-certificates', 'ca-certificates-java', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'junit4', 'junit5', 'libactivation-java', 'libantlr4-runtime-java', 'libaopalliance-java', 'libapache-pom-java', 'libapfloat-java', 'libapiguardian-java', 'libapparmor1:amd64', 'libargs4j-java', 'libasm-java', 'libasound2-data', 'libasound2t64:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbiojava6-java', 'libbrotli1:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcharts4j-java', 'libciftools-java', 'libcloudproviders0:amd64', 'libcodemodel-java', 'libcolord2:amd64', 'libcommons-beanutils-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-exec-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcommons-text-java', 'libcups2t64:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdistlib-java', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'liberror-prone-java', 'libexec-maven-plugin-java', 'libexpat1:amd64', 'libezmorph-java', 'libfastinfoset-java', 'libfastutil-java', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreemarker-java', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgoogle-gson-java', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libguava-java', 'libguice-java', 'libhamcrest-java', 'libharfbuzz0b:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu72:amd64', 'libidn2-0:amd64', 'libinchi1.07', 'libistack-commons-java', 'libitext5-java', 'libjackson2-annotations-java', 'libjackson2-core-java', 'libjackson2-databind-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjgrapht-java', 'libjgraphx-java', 'libjheaps-java', 'libjmol-java', 'libjni-inchi-java', 'libjni-inchi-jni', 'libjpeg62-turbo:amd64', 'libjson-java', 'libjson-simple-java', 'libjsoup-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblog4j1.2-java', 'libmaven-archiver-java', 'libmaven-compiler-plugin-java', 'libmaven-file-management-java', 'libmaven-jar-plugin-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-incremental-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmmtf-java', 'libmsgpack-java', 'libnaga-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopentest4j-java', 'libopentest4j-reporting-java', 'libp11-kit0:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpicocli-java', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-compiler-java', 'libplexus-component-annotations-java', 'libplexus-container-default-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-languages-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libqdox2-java', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsnpeff-java', 'libsqlite3-0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libsystemd-shared:amd64', 'libtasn1-6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtrove3-java', 'libtxw2-java', 'libunistring5:amd64', 'libunivocity-parsers-java', 'libvecmath-java', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxbean-reflect-java', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxom-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libz3-4:amd64', 'mesa-libgallium:amd64', 'ncbi-vdb-data', 'openjdk-21-jre:amd64', 'openjdk-21-jre-headless:amd64', 'openssl', 'procps', 'shared-mime-info', 'systemd', 'systemd-sysv', 'x11-common', 'xkb-data', 'snpeff'] 0m57.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser adwaita-icon-theme ant ant-optional at-spi2-common ca-certificates ca-certificates-java dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jre default-jre-headless fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme java-common junit4 junit5 libactivation-java libantlr4-runtime-java libaopalliance-java libapache-pom-java libapfloat-java libapiguardian-java libapparmor1 libargs4j-java libasm-java libasound2-data libasound2t64 libatinject-jsr330-api-java libatk-bridge2.0-0t64 libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libbiojava6-java libbrotli1 libcairo-gobject2 libcairo2 libcdi-api-java libcharts4j-java libciftools-java libcloudproviders0 libcodemodel-java libcolord2 libcommons-beanutils-java libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-exec-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-math-java libcommons-math3-java libcommons-parent-java libcommons-text-java libcups2t64 libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdistlib-java libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libelf1t64 libepoxy0 liberror-prone-java libexec-maven-plugin-java libexpat1 libezmorph-java libfastinfoset-java libfastutil-java libffi8 libfontconfig1 libfreemarker-java libfreetype6 libfribidi0 libgbm1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0t64 libglvnd0 libglx-mesa0 libglx0 libgnutls30t64 libgoogle-gson-java libgraphite2-3 libgssapi-krb5-2 libgtk-3-0t64 libgtk-3-common libguava-java libguice-java libhamcrest-java libharfbuzz0b libhtsjdk-java libhttpclient-java libhttpcore-java libicu72 libidn2-0 libinchi1.07 libistack-commons-java libitext5-java libjackson2-annotations-java libjackson2-core-java libjackson2-databind-java libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjgrapht-java libjgraphx-java libjheaps-java libjmol-java libjni-inchi-java libjni-inchi-jni libjpeg62-turbo libjson-java libjson-simple-java libjsoup-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblerc4 libllvm19 liblog4j1.2-java libmaven-archiver-java libmaven-compiler-plugin-java libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java libmaven-resolver-java libmaven-shared-incremental-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto16 libmbedtls21 libmbedx509-7 libmmtf-java libmsgpack-java libnaga-java libncbi-ngs3 libncbi-vdb3 libncursesw6 libngs-java libngs-jni libnspr4 libnss3 libopentest4j-java libopentest4j-reporting-java libp11-kit0 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libpicocli-java libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java libplexus-component-annotations-java libplexus-container-default-java libplexus-interpolation-java libplexus-io-java libplexus-languages-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16t64 libproc2-0 libqdox2-java librelaxng-datatype-java librhino-java librngom-java libsensors-config libsensors5 libsharpyuv0 libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libsnpeff-java libsqlite3-0 libstax-ex-java libstreambuffer-java libsystemd-shared libtasn1-6 libthai-data libthai0 libtiff6 libtrove3-java libtxw2-java libunistring5 libunivocity-parsers-java libvecmath-java libvulkan1 libwagon-http-java libwagon-provider-api-java libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxbean-reflect-java libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxom-java libxrandr2 libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java libz3-4 mesa-libgallium ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless openssl procps shared-mime-info snpeff systemd systemd-sysv x11-common xkb-data 0 upgraded, 0 newly installed, 285 to remove and 0 not upgraded. After this operation, 736 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14932 files and directories currently installed.) Removing snpeff (5.2.f+dfsg-1) ... Removing default-jre (2:1.21-76) ... Removing openjdk-21-jre:amd64 (21.0.6+7-1) ... Removing libgtk-3-0t64:amd64 (3.24.48-4) ... Removing libgtk-3-common (3.24.48-4) ... Removing dconf-gsettings-backend:amd64 (0.40.0-5) ... Removing dconf-service (0.40.0-5) ... Removing dbus-user-session (1.16.0-1) ... Removing libpam-systemd:amd64 (257.3-1) ... Removing dbus (1.16.0-1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing dbus-system-bus-common (1.16.0-1) ... Removing adduser (3.137) ... Removing adwaita-icon-theme (48~beta-3) ... Removing libsnpeff-java (5.2.f+dfsg-1) ... Removing libbiojava6-java (6.1.0+dfsg-5) ... Removing libjaxb-java (2.3.0.1-11) ... Removing libtxw2-java (2.3.0.1-11) ... Removing libatk-bridge2.0-0t64:amd64 (2.55.2-1) ... Removing libatk1.0-0t64:amd64 (2.55.2-1) ... Removing at-spi2-common (2.55.2-1) ... Removing libhtsjdk-java (4.1.3+dfsg-2) ... Removing libjson-java (3.1.0+dfsg-2) ... Removing junit5 (5.10.3-1) ... Removing junit4 (4.13.2-5) ... Removing default-jre-headless (2:1.21-76) ... Removing dbus-daemon (1.16.0-1) ... Removing dbus-bin (1.16.0-1) ... Removing dbus-session-bus-common (1.16.0-1) ... Removing libpangocairo-1.0-0:amd64 (1.56.1-1) ... Removing libpangoft2-1.0-0:amd64 (1.56.1-1) ... Removing libpango-1.0-0:amd64 (1.56.1-1) ... Removing fontconfig (2.15.0-2) ... Removing libcairo-gobject2:amd64 (1.18.2-2) ... Removing libcairo2:amd64 (1.18.2-2) ... Removing libfontconfig1:amd64 (2.15.0-2) ... Removing fontconfig-config (2.15.0-2) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing gtk-update-icon-cache (4.17.4+ds-4) ... Removing hicolor-icon-theme (0.18-2) ... Removing libfastinfoset-java (1.2.12-4) ... Removing libstreambuffer-java (1.5.4-1.1) ... Removing libstax-ex-java (1.7.8-3) ... Removing libjaxb-api-java (2.3.1-1) ... Removing libjgrapht-java (1.5.2-1) ... Removing libantlr4-runtime-java (4.9.2-3) ... Removing libmmtf-java (1.0.11-1) ... Removing libmsgpack-java (0.9.6-1) ... Removing libjmol-java (16.2.33+dfsg-1) ... Removing libjni-inchi-java (0.8+dfsg-8) ... Removing libmaven-compiler-plugin-java (3.13.0-1) ... Removing libplexus-compiler-java (2.13.0-1) ... Removing libcommons-text-java (1.12.0-1) ... Removing libmaven-jar-plugin-java (3.3.0-2) ... Removing libcommons-beanutils-java (1.9.4-2) ... Removing libapfloat-java (1.14.0-2) ... Removing libapiguardian-java (1.1.2-1) ... Removing systemd-sysv (257.3-1) ... Removing systemd (257.3-1) ... Removing libapparmor1:amd64 (4.1.0~beta5-2) ... Removing libplexus-languages-java (1.1.1-2) ... Removing libasm-java (9.7.1-1) ... Removing libasound2t64:amd64 (1.2.13-1+b1) ... Removing libasound2-data (1.2.13-1) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-2) ... Removing shared-mime-info (2.4-5+b2) ... Removing libcloudproviders0:amd64 (0.3.6-1+b1) ... Removing libatspi2.0-0t64:amd64 (2.55.2-1) ... Removing libcups2t64:amd64 (2.4.10-2+b1) ... Removing libavahi-client3:amd64 (0.8-16) ... Removing libavahi-common3:amd64 (0.8-16) ... Removing libavahi-common-data:amd64 (0.8-16) ... Removing libharfbuzz0b:amd64 (10.2.0-1) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2+b6) ... Removing libcharts4j-java (1.3-4) ... Removing libciftools-java (6.0.0-1) ... Removing libcolord2:amd64 (1.4.7-1+b2) ... Removing libmaven-archiver-java (3.6.2-1) ... Removing libcommons-collections3-java (3.2.2-3) ... Removing libcommons-collections4-java (4.4-2) ... Removing libexec-maven-plugin-java (3.1.0-2) ... Removing libcommons-exec-java (1.3-2) ... Removing libcommons-jexl2-java (2.1.1-6) ... Removing libcommons-lang-java (2.6-10) ... Removing libdistlib-java (1.0-5) ... Removing libcommons-math-java (2.2-9) ... Removing libcommons-math3-java (3.6.1-4) ... Removing libthai0:amd64 (0.1.29-2+b1) ... Removing libdatrie1:amd64 (0.2.13-3+b1) ... Removing libdbus-1-3:amd64 (1.16.0-1) ... Removing libdconf1:amd64 (0.40.0-5) ... Removing libtiff6:amd64 (4.5.1+git230720-5) ... Removing libdeflate0:amd64 (1.23-1+b1) ... Removing libgl1:amd64 (1.7.0-1+b2) ... Removing libglx0:amd64 (1.7.0-1+b2) ... Removing libglx-mesa0:amd64 (24.3.4-3) ... Removing libgl1-mesa-dri:amd64 (24.3.4-3) ... Removing libgbm1:amd64 (24.3.4-3) ... Removing mesa-libgallium:amd64 (24.3.4-3) ... Removing libdrm-amdgpu1:amd64 (2.4.123-1) ... Removing libdrm-radeon1:amd64 (2.4.123-1) ... Removing libdrm-intel1:amd64 (2.4.123-1) ... Removing libdtd-parser-java (1.2-1) ... Removing libllvm19:amd64 (1:19.1.7-1+b1) ... Removing libedit2:amd64 (3.1-20250104-1) ... Removing libelf1t64:amd64 (0.192-4) ... Removing libepoxy0:amd64 (1.5.10-2) ... Removing libplexus-container-default-java (2.1.1-1) ... Removing libexpat1:amd64 (2.6.4-1) ... Removing libezmorph-java (1.0.6-4) ... Removing libfastutil-java (8.5.15+dfsg-1) ... Removing libwayland-server0:amd64 (1.23.1-3) ... Removing libwayland-cursor0:amd64 (1.23.1-3) ... Removing libwayland-client0:amd64 (1.23.1-3) ... Removing libfreemarker-java (2.3.32-2) ... Removing libfribidi0:amd64 (1.0.16-1) ... Removing libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... Removing libgif7:amd64 (5.2.2-1+b1) ... Removing libglapi-mesa:amd64 (24.3.4-3) ... Removing libglvnd0:amd64 (1.7.0-1+b2) ... Removing libgnutls30t64:amd64 (3.8.9-2) ... Removing libgoogle-gson-java (2.10.1-1) ... Removing libgraphite2-3:amd64 (1.3.14-2+b1) ... Removing libgssapi-krb5-2:amd64 (1.21.3-4) ... Removing libhamcrest-java (2.2-2) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Removing libicu72:amd64 (72.1-6) ... Removing libidn2-0:amd64 (2.3.7-2+b1) ... Removing libjni-inchi-jni (0.8+dfsg-8) ... Removing libinchi1.07 (1.07.2+dfsg-1) ... Removing libitext5-java (5.5.13.3-4) ... Removing libjackson2-databind-java (2.14.0+ds-1) ... Removing libjackson2-annotations-java (2.14.0-1) ... Removing libjackson2-core-java (2.14.1-1) ... Removing libxom-java (1.3.9-1) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjgraphx-java (2.1.0.7-5) ... Removing libjheaps-java (0.14-2) ... Removing libjson-simple-java (2.3.0-2) ... Removing libkrb5-3:amd64 (1.21.3-4) ... Removing libk5crypto3:amd64 (1.21.3-4) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-4) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing liblog4j1.2-java (1.2.17-11) ... Removing libmaven-shared-incremental-java (1.1-6) ... Removing libngs-java:amd64 (3.0.9+dfsg-7+b2) ... Removing libngs-jni:amd64 (3.0.9+dfsg-7+b2) ... Removing libncbi-ngs3:amd64 (3.0.9+dfsg-7+b2) ... Removing libncbi-vdb3:amd64 (3.0.9+dfsg-2) ... Removing libmbedtls21:amd64 (3.6.2-3) ... Removing libmbedx509-7:amd64 (3.6.2-3) ... Removing libmbedcrypto16:amd64 (3.6.2-3) ... Removing libnaga-java (3.0+svn80-5) ... Removing procps (2:4.0.4-7) ... Removing libncursesw6:amd64 (6.5+20250216-1) ... Removing libopentest4j-java (1.2.0-4) ... Removing libopentest4j-reporting-java (0.1.0-M1-2) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libpciaccess0:amd64 (0.17-3+b3) ... Removing libpicocli-java (4.6.2-2) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libpng16-16t64:amd64 (1.6.46-4) ... Removing libproc2-0:amd64 (2:4.0.4-7) ... Removing libqdox2-java (2.0.3-1) ... Removing libxsom-java (2.3.0.1-11) ... Removing librngom-java (2.3.0.1-11) ... Removing librelaxng-datatype-java (1.0+ds1-4) ... Removing librhino-java (1.7.15-1) ... Removing libsensors5:amd64 (1:3.6.0-10+b1) ... Removing libsensors-config (1:3.6.0-10) ... Removing libwebp7:amd64 (1.5.0-0.1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1) ... Removing libsystemd-shared:amd64 (257.3-1) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libthai-data (0.1.29-2) ... Removing libtrove3-java (3.0.3-5) ... Removing libunistring5:amd64 (1.3-1) ... Removing libunivocity-parsers-java (2.9.1-1) ... Removing libvecmath-java (1.5.2-7) ... Removing libvulkan1:amd64 (1.4.304.0-1) ... Removing libwayland-egl1:amd64 (1.23.1-3) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b4) ... Removing libxtst6:amd64 (2:1.2.5-1) ... Removing libx11-xcb1:amd64 (2:1.8.10-2) ... Removing libxcb-xfixes0:amd64 (1.17.0-2+b1) ... Removing libxcb-sync1:amd64 (1.17.0-2+b1) ... Removing libxbean-reflect-java (4.5-9) ... Removing libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Removing libxcb-glx0:amd64 (1.17.0-2+b1) ... Removing libxcb-present0:amd64 (1.17.0-2+b1) ... Removing libxcb-randr0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcomposite1:amd64 (1:0.4.6-1) ... Removing libxcursor1:amd64 (1:1.2.3-1) ... Removing libxdamage1:amd64 (1:1.1.6-1+b2) ... Removing libxerces2-java (2.12.2-1) ... Removing libxrandr2:amd64 (2:1.5.4-1+b3) ... Removing libxfixes3:amd64 (1:6.0.0-2+b4) ... Removing libxi6:amd64 (2:1.8.2-1) ... Removing libxinerama1:amd64 (2:1.1.4-3+b3) ... Removing libxkbcommon0:amd64 (1.7.0-2) ... Removing libxml-commons-external-java (1.4.01-6) ... Removing libxml-commons-resolver1.1-java (1.2-11) ... Removing libxrender1:amd64 (1:0.9.10-1.1+b4) ... Removing libxshmfence1:amd64 (1.3-1+b3) ... Removing libz3-4:amd64 (4.13.3-1) ... Removing ncbi-vdb-data (3.0.9+dfsg-2) ... Removing x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xkb-data (2.42-1) ... Removing libglib2.0-0t64:amd64 (2.83.3-2) ... Removing libatomic1:amd64 (14.2.0-17) ... Removing libdrm2:amd64 (2.4.123-1) ... Removing libdrm-common (2.4.123-1) ... Removing libffi8:amd64 (3.4.7-1) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing libx11-6:amd64 (2:1.8.10-2) ... Removing libx11-data (2:1.8.10-2) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing libistack-commons-java (3.0.6-5) ... Removing ant-optional (1.10.15-1) ... Removing ant (1.10.15-1) ... Removing openjdk-21-jre-headless:amd64 (21.0.6+7-1) ... Removing ca-certificates-java (20240118) ... Removing ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing java-common (0.76) ... Removing libactivation-java (1.2.0-2) ... Removing libmaven-file-management-java (3.0.0-2) ... Removing libmaven-shared-io-java (3.0.0-4) ... Removing libmaven3-core-java (3.9.9-1) ... Removing libguice-java (5.1.0-1) ... Removing libaopalliance-java (20070526-7) ... Removing libmaven-parent-java (43-2) ... Removing libargs4j-java (2.33-2) ... Removing libplexus-sec-dispatcher-java (2.0-3) ... Removing libplexus-cipher-java (2.0-1) ... Removing libsisu-plexus-java (0.3.5-1) ... Removing libsisu-inject-java (0.3.5-1) ... Removing libcdi-api-java (1.2-4) ... Removing libcommons-cli-java (1.6.0-1) ... Removing libplexus-archiver-java (4.6.1-1) ... Removing libcommons-compress-java (1.27.1-2) ... Removing libwagon-http-java (3.5.3-1) ... Removing libhttpclient-java (4.5.14-1) ... Removing libcommons-codec-java (1.17.1-1) ... Removing libplexus-io-java (3.3.1-2) ... Removing libmaven-resolver-java (1.9.22-1) ... Removing libcommons-lang3-java (3.17.0-1) ... Removing libdom4j-java (2.1.4-1) ... Removing liberror-prone-java (2.18.0-1) ... Removing libguava-java (32.0.1-1) ... Removing libgeronimo-annotation-1.3-spec-java (1.3-1) ... Removing libgeronimo-interceptor-3.0-spec-java (1.0.1-5) ... Removing libhttpcore-java (4.4.16-1) ... Removing libjaxen-java (1.1.6-5) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Removing libjsoup-java (1.15.3-1) ... Removing libjsr305-java (0.1~+svn49-12) ... Removing liblcms2-2:amd64 (2.16-2) ... Removing libmaven-shared-utils-java (3.4.2-1) ... Removing libnss3:amd64 (2:3.108-1) ... Removing libnspr4:amd64 (2:4.36-1) ... Removing libpcsclite1:amd64 (2.3.1-1) ... Removing libplexus-classworlds-java (2.7.0-1) ... Removing libplexus-component-annotations-java (2.1.1-1) ... Removing libplexus-interpolation-java (1.27-1) ... Removing libwagon-provider-api-java (3.5.3-1) ... Removing libplexus-utils2-java (3.4.2-1) ... Removing libslf4j-java (1.7.32-1) ... Removing libsnappy-java (1.1.10.7-1) ... Removing libsnappy-jni (1.1.10.7-1) ... Removing libsnappy1v5:amd64 (1.2.1-1+b1) ... Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libxz-java (1.9-1) ... Removing openssl (3.4.1-1) ... Removing libcodemodel-java (2.6+jaxb2.3.0.1-11) ... Removing libcommons-logging-java (1.3.0-1) ... Removing libatinject-jsr330-api-java (1.0+ds1-6) ... Removing libcommons-io-java (2.18.0-1) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (33-2) ... Processing triggers for libc-bin (2.40-7) ... 0m57.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', 'remove', 'adduser', 'adwaita-icon-theme', 'ant', 'ant-optional', 'at-spi2-common', 'ca-certificates', 'ca-certificates-java', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'junit4', 'junit5', 'libactivation-java', 'libantlr4-runtime-java', 'libaopalliance-java', 'libapache-pom-java', 'libapfloat-java', 'libapiguardian-java', 'libapparmor1:amd64', 'libargs4j-java', 'libasm-java', 'libasound2-data', 'libasound2t64:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbiojava6-java', 'libbrotli1:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcharts4j-java', 'libciftools-java', 'libcloudproviders0:amd64', 'libcodemodel-java', 'libcolord2:amd64', 'libcommons-beanutils-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-exec-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcommons-text-java', 'libcups2t64:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdistlib-java', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'liberror-prone-java', 'libexec-maven-plugin-java', 'libexpat1:amd64', 'libezmorph-java', 'libfastinfoset-java', 'libfastutil-java', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreemarker-java', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgoogle-gson-java', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libguava-java', 'libguice-java', 'libhamcrest-java', 'libharfbuzz0b:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu72:amd64', 'libidn2-0:amd64', 'libinchi1.07', 'libistack-commons-java', 'libitext5-java', 'libjackson2-annotations-java', 'libjackson2-core-java', 'libjackson2-databind-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjgrapht-java', 'libjgraphx-java', 'libjheaps-java', 'libjmol-java', 'libjni-inchi-java', 'libjni-inchi-jni', 'libjpeg62-turbo:amd64', 'libjson-java', 'libjson-simple-java', 'libjsoup-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblog4j1.2-java', 'libmaven-archiver-java', 'libmaven-compiler-plugin-java', 'libmaven-file-management-java', 'libmaven-jar-plugin-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-incremental-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmmtf-java', 'libmsgpack-java', 'libnaga-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopentest4j-java', 'libopentest4j-reporting-java', 'libp11-kit0:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpicocli-java', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-compiler-java', 'libplexus-component-annotations-java', 'libplexus-container-default-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-languages-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libqdox2-java', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsnpeff-java', 'libsqlite3-0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libsystemd-shared:amd64', 'libtasn1-6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtrove3-java', 'libtxw2-java', 'libunistring5:amd64', 'libunivocity-parsers-java', 'libvecmath-java', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxbean-reflect-java', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxom-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libz3-4:amd64', 'mesa-libgallium:amd64', 'ncbi-vdb-data', 'openjdk-21-jre:amd64', 'openjdk-21-jre-headless:amd64', 'openssl', 'procps', 'shared-mime-info', 'systemd', 'systemd-sysv', 'x11-common', 'xkb-data', 'snpeff'] 0m57.8s INFO: Running scripts post_remove 0m57.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_remove_exceptions'] 0m57.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_remove_exceptions'] 0m57.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg', '--purge', 'adduser', 'adwaita-icon-theme', 'ant', 'ant-optional', 'at-spi2-common', 'ca-certificates', 'ca-certificates-java', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'junit4', 'junit5', 'libactivation-java', 'libantlr4-runtime-java', 'libaopalliance-java', 'libapache-pom-java', 'libapfloat-java', 'libapiguardian-java', 'libapparmor1:amd64', 'libargs4j-java', 'libasm-java', 'libasound2-data', 'libasound2t64:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbiojava6-java', 'libbrotli1:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcharts4j-java', 'libciftools-java', 'libcloudproviders0:amd64', 'libcodemodel-java', 'libcolord2:amd64', 'libcommons-beanutils-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-exec-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcommons-text-java', 'libcups2t64:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdistlib-java', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'liberror-prone-java', 'libexec-maven-plugin-java', 'libexpat1:amd64', 'libezmorph-java', 'libfastinfoset-java', 'libfastutil-java', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreemarker-java', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgoogle-gson-java', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libguava-java', 'libguice-java', 'libhamcrest-java', 'libharfbuzz0b:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu72:amd64', 'libidn2-0:amd64', 'libinchi1.07', 'libistack-commons-java', 'libitext5-java', 'libjackson2-annotations-java', 'libjackson2-core-java', 'libjackson2-databind-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjgrapht-java', 'libjgraphx-java', 'libjheaps-java', 'libjmol-java', 'libjni-inchi-java', 'libjni-inchi-jni', 'libjpeg62-turbo:amd64', 'libjson-java', 'libjson-simple-java', 'libjsoup-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblog4j1.2-java', 'libmaven-archiver-java', 'libmaven-compiler-plugin-java', 'libmaven-file-management-java', 'libmaven-jar-plugin-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-incremental-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmmtf-java', 'libmsgpack-java', 'libnaga-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopentest4j-java', 'libopentest4j-reporting-java', 'libp11-kit0:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpicocli-java', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-compiler-java', 'libplexus-component-annotations-java', 'libplexus-container-default-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-languages-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libqdox2-java', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsnpeff-java', 'libsqlite3-0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libsystemd-shared:amd64', 'libtasn1-6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtrove3-java', 'libtxw2-java', 'libunistring5:amd64', 'libunivocity-parsers-java', 'libvecmath-java', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxbean-reflect-java', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxom-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libz3-4:amd64', 'mesa-libgallium:amd64', 'ncbi-vdb-data', 'openjdk-21-jre:amd64', 'openjdk-21-jre-headless:amd64', 'openssl', 'procps', 'shared-mime-info', 'systemd', 'systemd-sysv', 'x11-common', 'xkb-data'] 0m58.3s DUMP: (Reading database ... 5183 files and directories currently installed.) Purging configuration files for adduser (3.137) ... Purging configuration files for adwaita-icon-theme (48~beta-3) ... dpkg: warning: ignoring request to remove ant which isn't installed dpkg: warning: ignoring request to remove ant-optional which isn't installed dpkg: warning: ignoring request to remove at-spi2-common which isn't installed Purging configuration files for ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20240118) ... Purging configuration files for dbus (1.16.0-1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory rmdir: failed to remove '/var/lib/dbus': Directory not empty dpkg: warning: while removing dbus, directory '/var/lib/dbus' not empty so not removed dpkg: warning: ignoring request to remove dbus-bin which isn't installed Purging configuration files for dbus-daemon (1.16.0-1) ... dpkg: warning: ignoring request to remove dbus-session-bus-common which isn't installed dpkg: warning: ignoring request to remove dbus-system-bus-common which isn't installed Purging configuration files for dbus-user-session (1.16.0-1) ... dpkg: warning: ignoring request to remove dconf-gsettings-backend which isn't installed dpkg: warning: ignoring request to remove dconf-service which isn't installed dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed Purging configuration files for fontconfig (2.15.0-2) ... Purging configuration files for fontconfig-config (2.15.0-2) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed Purging configuration files for java-common (0.76) ... dpkg: warning: ignoring request to remove junit4 which isn't installed dpkg: warning: ignoring request to remove junit5 which isn't installed dpkg: warning: ignoring request to remove libactivation-java which isn't installed dpkg: warning: ignoring request to remove libantlr4-runtime-java which isn't installed dpkg: warning: ignoring request to remove libaopalliance-java which isn't installed dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libapfloat-java which isn't installed dpkg: warning: ignoring request to remove libapiguardian-java which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libargs4j-java which isn't installed dpkg: warning: ignoring request to remove libasm-java which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libasound2t64 which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libatk-bridge2.0-0t64 which isn't installed dpkg: warning: ignoring request to remove libatk1.0-0t64 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libatspi2.0-0t64 which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libbiojava6-java which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcairo-gobject2 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcdi-api-java which isn't installed dpkg: warning: ignoring request to remove libcharts4j-java which isn't installed dpkg: warning: ignoring request to remove libciftools-java which isn't installed dpkg: warning: ignoring request to remove libcloudproviders0 which isn't installed dpkg: warning: ignoring request to remove libcodemodel-java which isn't installed dpkg: warning: ignoring request to remove libcolord2 which isn't installed dpkg: warning: ignoring request to remove libcommons-beanutils-java which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-collections3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-collections4-java which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-exec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-jexl2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-logging-java which isn't installed dpkg: warning: ignoring request to remove libcommons-math-java which isn't installed dpkg: warning: ignoring request to remove libcommons-math3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcommons-text-java which isn't installed dpkg: warning: ignoring request to remove libcups2t64 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdconf1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdistlib-java which isn't installed dpkg: warning: ignoring request to remove libdom4j-java which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libdtd-parser-java which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove libepoxy0 which isn't installed dpkg: warning: ignoring request to remove liberror-prone-java which isn't installed dpkg: warning: ignoring request to remove libexec-maven-plugin-java which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libezmorph-java which isn't installed dpkg: warning: ignoring request to remove libfastinfoset-java which isn't installed dpkg: warning: ignoring request to remove libfastutil-java which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreemarker-java which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgbm1 which isn't installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-2) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgeronimo-annotation-1.3-spec-java which isn't installed dpkg: warning: ignoring request to remove libgeronimo-interceptor-3.0-spec-java which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (24.3.4-3) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.83.3-2) ... dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgoogle-gson-java which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-4) ... Purging configuration files for libgtk-3-0t64:amd64 (3.24.48-4) ... Purging configuration files for libgtk-3-common (3.24.48-4) ... dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libguice-java which isn't installed dpkg: warning: ignoring request to remove libhamcrest-java which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhtsjdk-java which isn't installed dpkg: warning: ignoring request to remove libhttpclient-java which isn't installed dpkg: warning: ignoring request to remove libhttpcore-java which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libinchi1.07 which isn't installed dpkg: warning: ignoring request to remove libistack-commons-java which isn't installed dpkg: warning: ignoring request to remove libitext5-java which isn't installed dpkg: warning: ignoring request to remove libjackson2-annotations-java which isn't installed dpkg: warning: ignoring request to remove libjackson2-core-java which isn't installed dpkg: warning: ignoring request to remove libjackson2-databind-java which isn't installed dpkg: warning: ignoring request to remove libjaxb-api-java which isn't installed dpkg: warning: ignoring request to remove libjaxb-java which isn't installed dpkg: warning: ignoring request to remove libjaxen-java which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjgrapht-java which isn't installed dpkg: warning: ignoring request to remove libjgraphx-java which isn't installed dpkg: warning: ignoring request to remove libjheaps-java which isn't installed dpkg: warning: ignoring request to remove libjmol-java which isn't installed dpkg: warning: ignoring request to remove libjni-inchi-java which isn't installed dpkg: warning: ignoring request to remove libjni-inchi-jni which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjson-java which isn't installed dpkg: warning: ignoring request to remove libjson-simple-java which isn't installed dpkg: warning: ignoring request to remove libjsoup-java which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libllvm19 which isn't installed dpkg: warning: ignoring request to remove liblog4j1.2-java which isn't installed dpkg: warning: ignoring request to remove libmaven-archiver-java which isn't installed dpkg: warning: ignoring request to remove libmaven-compiler-plugin-java which isn't installed dpkg: warning: ignoring request to remove libmaven-file-management-java which isn't installed dpkg: warning: ignoring request to remove libmaven-jar-plugin-java which isn't installed dpkg: warning: ignoring request to remove libmaven-parent-java which isn't installed dpkg: warning: ignoring request to remove libmaven-resolver-java which isn't installed dpkg: warning: ignoring request to remove libmaven-shared-incremental-java which isn't installed dpkg: warning: ignoring request to remove libmaven-shared-io-java which isn't installed dpkg: warning: ignoring request to remove libmaven-shared-utils-java which isn't installed dpkg: warning: ignoring request to remove libmaven3-core-java which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed dpkg: warning: ignoring request to remove libmmtf-java which isn't installed dpkg: warning: ignoring request to remove libmsgpack-java which isn't installed dpkg: warning: ignoring request to remove libnaga-java which isn't installed dpkg: warning: ignoring request to remove libncbi-ngs3 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libngs-java which isn't installed dpkg: warning: ignoring request to remove libngs-jni which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libopentest4j-java which isn't installed dpkg: warning: ignoring request to remove libopentest4j-reporting-java which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpam-systemd which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libpicocli-java which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libplexus-archiver-java which isn't installed dpkg: warning: ignoring request to remove libplexus-cipher-java which isn't installed dpkg: warning: ignoring request to remove libplexus-classworlds-java which isn't installed dpkg: warning: ignoring request to remove libplexus-compiler-java which isn't installed dpkg: warning: ignoring request to remove libplexus-component-annotations-java which isn't installed dpkg: warning: ignoring request to remove libplexus-container-default-java which isn't installed dpkg: warning: ignoring request to remove libplexus-interpolation-java which isn't installed dpkg: warning: ignoring request to remove libplexus-io-java which isn't installed dpkg: warning: ignoring request to remove libplexus-languages-java which isn't installed dpkg: warning: ignoring request to remove libplexus-sec-dispatcher-java which isn't installed dpkg: warning: ignoring request to remove libplexus-utils2-java which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libqdox2-java which isn't installed dpkg: warning: ignoring request to remove librelaxng-datatype-java which isn't installed dpkg: warning: ignoring request to remove librhino-java which isn't installed dpkg: warning: ignoring request to remove librngom-java which isn't installed Purging configuration files for libsensors-config (1:3.6.0-10) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsisu-inject-java which isn't installed dpkg: warning: ignoring request to remove libsisu-plexus-java which isn't installed dpkg: warning: ignoring request to remove libslf4j-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-jni which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed Purging configuration files for libsnpeff-java (5.2.f+dfsg-1) ... dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libstax-ex-java which isn't installed dpkg: warning: ignoring request to remove libstreambuffer-java which isn't installed dpkg: warning: ignoring request to remove libsystemd-shared which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libtrove3-java which isn't installed dpkg: warning: ignoring request to remove libtxw2-java which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed dpkg: warning: ignoring request to remove libunivocity-parsers-java which isn't installed dpkg: warning: ignoring request to remove libvecmath-java which isn't installed dpkg: warning: ignoring request to remove libvulkan1 which isn't installed dpkg: warning: ignoring request to remove libwagon-http-java which isn't installed dpkg: warning: ignoring request to remove libwagon-provider-api-java which isn't installed dpkg: warning: ignoring request to remove libwayland-client0 which isn't installed dpkg: warning: ignoring request to remove libwayland-cursor0 which isn't installed dpkg: warning: ignoring request to remove libwayland-egl1 which isn't installed dpkg: warning: ignoring request to remove libwayland-server0 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxbean-reflect-java which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-randr0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxerces2-java which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon0 which isn't installed dpkg: warning: ignoring request to remove libxml-commons-external-java which isn't installed Purging configuration files for libxml-commons-resolver1.1-java (1.2-11) ... dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxom-java which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxsom-java which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libxz-java which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove mesa-libgallium which isn't installed dpkg: warning: ignoring request to remove ncbi-vdb-data which isn't installed dpkg: warning: ignoring request to remove openjdk-21-jre which isn't installed Purging configuration files for openjdk-21-jre-headless:amd64 (21.0.6+7-1) ... Purging configuration files for openssl (3.4.1-1) ... Purging configuration files for procps (2:4.0.4-7) ... Purging configuration files for shared-mime-info (2.4-5+b2) ... Purging configuration files for systemd (257.3-1) ... dpkg: warning: ignoring request to remove systemd-sysv which isn't installed Purging configuration files for x11-common (1:7.7+24) ... dpkg: warning: ignoring request to remove xkb-data which isn't installed 0m58.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg', '--purge', 'adduser', 'adwaita-icon-theme', 'ant', 'ant-optional', 'at-spi2-common', 'ca-certificates', 'ca-certificates-java', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'junit4', 'junit5', 'libactivation-java', 'libantlr4-runtime-java', 'libaopalliance-java', 'libapache-pom-java', 'libapfloat-java', 'libapiguardian-java', 'libapparmor1:amd64', 'libargs4j-java', 'libasm-java', 'libasound2-data', 'libasound2t64:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbiojava6-java', 'libbrotli1:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcharts4j-java', 'libciftools-java', 'libcloudproviders0:amd64', 'libcodemodel-java', 'libcolord2:amd64', 'libcommons-beanutils-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-exec-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcommons-text-java', 'libcups2t64:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdistlib-java', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'liberror-prone-java', 'libexec-maven-plugin-java', 'libexpat1:amd64', 'libezmorph-java', 'libfastinfoset-java', 'libfastutil-java', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreemarker-java', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgoogle-gson-java', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libguava-java', 'libguice-java', 'libhamcrest-java', 'libharfbuzz0b:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu72:amd64', 'libidn2-0:amd64', 'libinchi1.07', 'libistack-commons-java', 'libitext5-java', 'libjackson2-annotations-java', 'libjackson2-core-java', 'libjackson2-databind-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjgrapht-java', 'libjgraphx-java', 'libjheaps-java', 'libjmol-java', 'libjni-inchi-java', 'libjni-inchi-jni', 'libjpeg62-turbo:amd64', 'libjson-java', 'libjson-simple-java', 'libjsoup-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblog4j1.2-java', 'libmaven-archiver-java', 'libmaven-compiler-plugin-java', 'libmaven-file-management-java', 'libmaven-jar-plugin-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-incremental-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmmtf-java', 'libmsgpack-java', 'libnaga-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopentest4j-java', 'libopentest4j-reporting-java', 'libp11-kit0:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpicocli-java', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-compiler-java', 'libplexus-component-annotations-java', 'libplexus-container-default-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-languages-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libqdox2-java', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsnpeff-java', 'libsqlite3-0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libsystemd-shared:amd64', 'libtasn1-6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtrove3-java', 'libtxw2-java', 'libunistring5:amd64', 'libunivocity-parsers-java', 'libvecmath-java', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxbean-reflect-java', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxom-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libz3-4:amd64', 'mesa-libgallium:amd64', 'ncbi-vdb-data', 'openjdk-21-jre:amd64', 'openjdk-21-jre-headless:amd64', 'openssl', 'procps', 'shared-mime-info', 'systemd', 'systemd-sysv', 'x11-common', 'xkb-data'] 0m58.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg', '--purge', 'snpeff'] 0m58.3s DUMP: dpkg: warning: ignoring request to remove snpeff which isn't installed 0m58.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg', '--purge', 'snpeff'] 0m58.3s INFO: Running scripts post_purge 0m58.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_purge_exceptions'] 0m58.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_purge_exceptions'] 0m58.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg', '--purge', '--pending'] 0m58.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg', '--purge', '--pending'] 0m58.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg', '--remove', '--pending'] 0m58.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg', '--remove', '--pending'] 0m58.4s INFO: Running scripts post_test 0m58.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_test_exceptions'] 0m58.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'tmp/scripts/post_test_exceptions'] 0m58.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m58.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m58.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg-divert', '--list'] 0m58.6s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m58.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'dpkg-divert', '--list'] 0m58.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', 'clean'] 0m58.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdj674ye7', 'apt-get', 'clean'] 0m58.7s DEBUG: Recording chroot state 0m59.1s INFO: Warning: Package purging left files on system: /etc/default/locale -> ../locale.conf not owned /etc/fonts/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned /etc/vconsole.conf -> default/keyboard not owned /root/.ssh/ not owned /var/cache/private/ not owned /var/lib/private/ not owned /var/log/private/ not owned 0m59.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/shm'] 0m59.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/shm'] 0m59.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/console'] 0m59.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/console'] 0m59.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/ptmx'] 0m59.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/ptmx'] 0m59.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/pts'] 0m59.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/dev/pts'] 0m59.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/proc'] 0m59.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdj674ye7/proc'] 0m59.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m59.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpdj674ye7'] 0m59.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpdj674ye7 0m59.6s INFO: PASS: Upgrading between Debian distributions. 0m59.6s INFO: PASS: All tests. 0m59.6s INFO: piuparts run ends. ret=0 End: 2025-02-21 03:59:59 GMT