Start: 2026-09-28 09:30:04 GMT [testing] Package: sra-toolkit Source: sra-sdk (3.2.1+dfsg-6) Version: 3.2.1+dfsg-6+b3 Installed-Size: 20601 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libhdf5-320 (>= 2.1.0), libmagic1t64 (>= 5.12), libncbi-vdb3 (>= 3.2.1+dfsg), libncbi-wvdb3 (>= 3.2.1+dfsg), libre2-11-absl20260526, libstdc++6 (>= 14), libxml2-16 (>= 2.14.1), zlib1g (>= 1:1.2.2) Recommends: med-config Description: utilities for the NCBI Sequence Read Archive Homepage: https://github.com/ncbi/sra-tools/ Description-md5: 1a61cd8ef6f417d5f86c6c13697e7a05 Section: science Priority: optional Filename: pool/main/s/sra-sdk/sra-toolkit_3.2.1+dfsg-6+b3_amd64.deb Size: 7417812 MD5sum: 15204be9be118aa3e5c626860e929b7b SHA256: f4bf4a13e9f0b09fc4e1307af95c851b2c1f8e44de854b17071c58790744df62 [sid] Package: sra-toolkit Source: sra-sdk Version: 3.4.1+dfsg-2 Installed-Size: 17393 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libhdf5-320 (>= 2.1.0), libmagic1t64 (>= 5.12), libncbi-vdb3 (>= 3.4.1+dfsg), libncbi-wvdb3 (>= 3.4.1+dfsg), libre2-11-absl20260526, libstdc++6 (>= 14), libxml2-16 (>= 2.14.1), zlib1g (>= 1:1.2.2) Recommends: med-config Description: utilities for the NCBI Sequence Read Archive Homepage: https://github.com/ncbi/sra-tools/ Commands: abi-dump, abi-load, align-cache, align-info, bam-load, ccextract, cg-load, check-corrupt, check-redact, compute-coverage, copycat, dump-blob-boundaries, dump-ref-fasta, fastconv, fasterq-dump, fastq-dump, fastq-load, general-loader, helicos-load, illumina-dump, illumina-load, kar, kar+, kar+meta, kdbmeta, latf-load, make-read-filter, md5cp, meta-cmp, meta-copy, meta-repair, ngs-pileup, pacbio-load, pacbio-loadxml, prefetch, rcexplain, read-filter-redact, ref-variation, sam-dump, samview, sff-dump, sff-load, sharq, sra-add-fp, sra-info, sra-pileup, sra-search, sra-sort, sra-sort-cg, sra-stat, srapath, srf-load, test-sra, var-expand, vdb-config, vdb-copy, vdb-decrypt, vdb-diff, vdb-dump, vdb-encrypt, vdb-lock, vdb-sql, vdb-unlock, vdb-validate Description-md5: 1a61cd8ef6f417d5f86c6c13697e7a05 Section: science Priority: optional Filename: pool/main/s/sra-sdk/sra-toolkit_3.4.1+dfsg-2_amd64.deb Size: 7112312 MD5sum: 899edc484dc1a3d5c782e47ba765357e SHA256: c0256f69513c04a29e9fcb1e6aceae240dcf1682e350c2a56dbc6ce586ebeb30 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt sra-toolkit=3.4.1+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt sra-toolkit=3.4.1+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp13mxpznt 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp13mxpznt 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/10', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/10', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp13mxpznt/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', 'update'] 0m2.3s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9994 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6617 kB] Fetched 16.8 MB in 1s (14.9 MB/s) Reading package lists... 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', 'update'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', '-yf', 'dist-upgrade'] 0m3.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', '-yf', 'dist-upgrade'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.8s DUMP: 884bca274942f333c49b00d6a1e0e418 - 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.8s INFO: Running scripts post_setup 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_setup_dummy_users'] 0m4.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_setup_dummy_users'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_setup_forbid_home'] 0m4.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_setup_forbid_home'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_setup_minimize'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_setup_minimize'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_setup_zz_backports'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_setup_zz_backports'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.3-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.3-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-6 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-6 install ok installed libc6:amd64 libc6 2.43-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.3-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.3-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 261.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 261.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.3-1 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.3-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026c-1 install ok installed util-linux util-linux 2.42.3-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m4.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m4.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m4.9s INFO: Running scripts is_testable 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/is_testable_uninstallable'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/is_testable_uninstallable'] 0m4.9s INFO: Running scripts pre_test 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_test_exceptions'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_test_exceptions'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_test_root_password'] 0m4.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_test_root_password'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'show', '--no-all-versions', 'sra-toolkit'] 0m5.3s DUMP: Package: sra-toolkit Source: sra-sdk (3.2.1+dfsg-6) Version: 3.2.1+dfsg-6+b3 Installed-Size: 20601 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libhdf5-320 (>= 2.1.0), libmagic1t64 (>= 5.12), libncbi-vdb3 (>= 3.2.1+dfsg), libncbi-wvdb3 (>= 3.2.1+dfsg), libre2-11-absl20260526, libstdc++6 (>= 14), libxml2-16 (>= 2.14.1), zlib1g (>= 1:1.2.2) Recommends: med-config Description-en: utilities for the NCBI Sequence Read Archive Tools for reading the SRA archive, generally by converting individual runs into some commonly used format such as fastq. . The textual dumpers "sra-dump" and "vdb-dump" are provided in this release as an aid in visual inspection. It is likely that their actual output formatting will be changed in the near future to a stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON THE OUTPUT FORMAT SEEN IN THIS RELEASE. . Other tools distributed in this package are: abi-dump, abi-load align-info bam-load cache-mgr cg-load copycat fasterq-dump fastq-dump, fastq-load helicos-load illumina-dump, illumina-load kar kdbmeta latf-load pacbio-load prefetch rcexplain remote-fuser sff-dump, sff-load sra-pileup, sra-sort, sra-stat, srapath srf-load test-sra vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock, vdb-passwd, vdb-unlock, vdb-validate . The "help" information will be improved in near future releases, and the tool options will become standardized across the set. More documentation will also be provided documentation on the NCBI web site. . Tool options may change in the next release. Version 1 tool options will remain supported wherever possible in order to preserve operation of any existing scripts. Description-md5: 1a61cd8ef6f417d5f86c6c13697e7a05 Homepage: https://github.com/ncbi/sra-tools/ Section: science Priority: optional Filename: pool/main/s/sra-sdk/sra-toolkit_3.2.1+dfsg-6+b3_amd64.deb Size: 7417812 MD5sum: 15204be9be118aa3e5c626860e929b7b SHA256: f4bf4a13e9f0b09fc4e1307af95c851b2c1f8e44de854b17071c58790744df62 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'show', '--no-all-versions', 'sra-toolkit'] 0m5.3s INFO: apt-cache knows about the following packages: sra-toolkit 0m5.3s INFO: Running scripts pre_install 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_database-server'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_database-server'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_exceptions'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_exceptions'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_extras'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_extras'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'policy'] 0m5.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'policy'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'policy', 'sra-toolkit'] 0m5.4s DUMP: sra-toolkit: Installed: (none) Candidate: 3.2.1+dfsg-6+b3 Version table: 3.2.1+dfsg-6+b3 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'policy', 'sra-toolkit'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', '-y', 'install', 'sra-toolkit'] 0m7.6s DUMP: Reading package lists... Building dependency tree... Solving dependencies... The following additional packages will be installed: libabsl20260526 libhdf5-320 libmagic-mgc libmagic1t64 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncbi-wvdb3 libre2-11 libsz2 libxml2-16 ncbi-vdb-data Suggested packages: file Recommended packages: python3:any med-config The following NEW packages will be installed: libabsl20260526 libhdf5-320 libmagic-mgc libmagic1t64 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncbi-wvdb3 libre2-11 libsz2 libxml2-16 ncbi-vdb-data sra-toolkit 0 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. Need to get 14.7 MB of archives. After this operation, 53.7 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libabsl20260526 amd64 20260526.0-2+b1 [584 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libhdf5-320 amd64 2.2.0+repack-5 [2177 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:6 http://deb.debian.org/debian forky/main amd64 libmbedcrypto16 amd64 3.6.7-3 [367 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libmbedx509-7 amd64 3.6.7-3 [157 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libmbedtls21 amd64 3.6.7-3 [250 kB] Get:9 http://deb.debian.org/debian forky/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2+b1 [1180 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libncbi-wvdb3 amd64 3.2.1+dfsg-2+b1 [1183 kB] Get:12 http://deb.debian.org/debian forky/main amd64 libre2-11 amd64 20251105-1+b2 [176 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:14 http://deb.debian.org/debian forky/main amd64 sra-toolkit amd64 3.2.1+dfsg-6+b3 [7418 kB] Fetched 14.7 MB in 0s (75.8 MB/s) Selecting previously unselected package libabsl20260526:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4963 files and directories currently installed.) Preparing to unpack .../00-libabsl20260526_20260526.0-2+b1_amd64.deb ... Unpacking libabsl20260526:amd64 (20260526.0-2+b1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../01-libsz2_1.1.7-1_amd64.deb ... Unpacking libsz2:amd64 (1.1.7-1) ... Selecting previously unselected package libhdf5-320:amd64. Preparing to unpack .../02-libhdf5-320_2.2.0+repack-5_amd64.deb ... Unpacking libhdf5-320:amd64 (2.2.0+repack-5) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package libmbedcrypto16:amd64. Preparing to unpack .../05-libmbedcrypto16_3.6.7-3_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.7-3) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../06-libmbedx509-7_3.6.7-3_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.7-3) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../07-libmbedtls21_3.6.7-3_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.7-3) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../08-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../09-libncbi-vdb3_3.2.1+dfsg-2+b1_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2+b1) ... Selecting previously unselected package libncbi-wvdb3:amd64. Preparing to unpack .../10-libncbi-wvdb3_3.2.1+dfsg-2+b1_amd64.deb ... Unpacking libncbi-wvdb3:amd64 (3.2.1+dfsg-2+b1) ... Selecting previously unselected package libre2-11:amd64. Preparing to unpack .../11-libre2-11_20251105-1+b2_amd64.deb ... Unpacking libre2-11:amd64 (20251105-1+b2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../12-libxml2-16_2.15.4+dfsg-1_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.4+dfsg-1) ... Selecting previously unselected package sra-toolkit. Preparing to unpack .../13-sra-toolkit_3.2.1+dfsg-6+b3_amd64.deb ... Unpacking sra-toolkit (3.2.1+dfsg-6+b3) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up libabsl20260526:amd64 (20260526.0-2+b1) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up libmbedcrypto16:amd64 (3.6.7-3) ... Setting up libsz2:amd64 (1.1.7-1) ... Setting up libre2-11:amd64 (20251105-1+b2) ... Setting up libmbedx509-7:amd64 (3.6.7-3) ... Setting up libmbedtls21:amd64 (3.6.7-3) ... Setting up libhdf5-320:amd64 (2.2.0+repack-5) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2+b1) ... Setting up libncbi-wvdb3:amd64 (3.2.1+dfsg-2+b1) ... Setting up sra-toolkit (3.2.1+dfsg-6+b3) ... Processing triggers for libc-bin (2.43-6) ... 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', '-y', 'install', 'sra-toolkit'] 0m7.6s INFO: Running scripts post_install 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_install_exceptions'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_install_exceptions'] 0m7.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m8.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m8.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp13mxpznt to sid 0m8.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m8.0s INFO: Running scripts pre_distupgrade 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', 'update'] 0m11.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7727 kB] Fetched 18.7 MB in 3s (7010 kB/s) Reading package lists... 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', 'update'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', '-yf', 'dist-upgrade'] 0m18.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libexpat1 libffi8 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsqlite3-0 media-types netbase python3 python3-minimal python3.14 python3.14-minimal readline-common The following packages will be upgraded: bsdutils libaudit-common libaudit1 libblkid1 libmount1 libncbi-vdb3 libncbi-wvdb3 libselinux1 libsmartcols1 libsystemd0 libudev1 libuuid1 login mount ncbi-vdb-data sra-toolkit util-linux 17 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 21.3 MB of archives. After this operation, 26.9 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.42.4-1 [34.5 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.42.4-1 [185 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.42.4-1 [232 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.42.4-1 [153 kB] Get:5 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.42.4-1 [1254 kB] Get:6 http://deb.debian.org/debian sid/main amd64 mount amd64 2.42.4-1 [172 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.11-2.1 [92.2 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 262-1 [512 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.2.1-1 [59.6 kB] Get:11 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.42.4-1 [124 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.8.5-1 [132 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpython3.14-minimal amd64 3.14.7-5 [902 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3.14-minimal amd64 3.14.7-5 [2720 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:16 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:17 http://deb.debian.org/debian sid/main amd64 netbase all 6.6 [10.3 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:20 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libpython3.14-stdlib amd64 3.14.7-5 [2362 kB] Get:24 http://deb.debian.org/debian sid/main amd64 python3.14 amd64 3.14.7-5 [861 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:26 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 262-1 [148 kB] Get:28 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.42.4-1 [92.9 kB] Get:29 http://deb.debian.org/debian sid/main amd64 ncbi-vdb-data all 3.4.1+dfsg-1 [86.1 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libncbi-vdb3 amd64 3.4.1+dfsg-1 [1260 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libncbi-wvdb3 amd64 3.4.1+dfsg-1 [1262 kB] Get:32 http://deb.debian.org/debian sid/main amd64 sra-toolkit amd64 3.4.1+dfsg-2 [7112 kB] Fetched 21.3 MB in 0s (89.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5398 files and directories currently installed.) Preparing to unpack .../libuuid1_2.42.4-1_amd64.deb ... Unpacking libuuid1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libuuid1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5398 files and directories currently installed.) Preparing to unpack .../libblkid1_2.42.4-1_amd64.deb ... Unpacking libblkid1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libblkid1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5398 files and directories currently installed.) Preparing to unpack .../libmount1_2.42.4-1_amd64.deb ... Unpacking libmount1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libmount1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5398 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.42.4-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libsmartcols1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5398 files and directories currently installed.) Preparing to unpack .../util-linux_2.42.4-1_amd64.deb ... Unpacking util-linux (2.42.4-1) over (2.42.3-1) ... Setting up util-linux (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5399 files and directories currently installed.) Preparing to unpack .../mount_2.42.4-1_amd64.deb ... Unpacking mount (2.42.4-1) over (2.42.3-1) ... Preparing to unpack .../libselinux1_3.11-2.1_amd64.deb ... Unpacking libselinux1:amd64 (3.11-2.1) over (3.11-2) ... Setting up libselinux1:amd64 (3.11-2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5399 files and directories currently installed.) Preparing to unpack .../libsystemd0_262-1_amd64.deb ... Unpacking libsystemd0:amd64 (262-1) over (261.2-1) ... Setting up libsystemd0:amd64 (262-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5399 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.2.1-1_all.deb ... Unpacking libaudit-common (1:4.2.1-1) over (1:4.1.2-1) ... Setting up libaudit-common (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5399 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.2.1-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.2.1-1) over (1:4.1.2-1+b2) ... Setting up libaudit1:amd64 (1:4.2.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5398 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.42.4-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.42.4-1) over (1:4.16.0-2+really2.42.3-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.8.5-1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.5-1) ... Selecting previously unselected package libpython3.14-minimal:amd64. Preparing to unpack .../libpython3.14-minimal_3.14.7-5_amd64.deb ... Unpacking libpython3.14-minimal:amd64 (3.14.7-5) ... Selecting previously unselected package python3.14-minimal. Preparing to unpack .../python3.14-minimal_3.14.7-5_amd64.deb ... Unpacking python3.14-minimal (3.14.7-5) ... Setting up libpython3.14-minimal:amd64 (3.14.7-5) ... Setting up libexpat1:amd64 (2.8.5-1) ... Setting up python3.14-minimal (3.14.7-5) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5754 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.14.7-3_amd64.deb ... Unpacking python3-minimal (3.14.7-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../03-libffi8_3.8.0-2_amd64.deb ... Unpacking libffi8:amd64 (3.8.0-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../06-libreadline8t64_8.3-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.53.4-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.53.4-2) ... Selecting previously unselected package libpython3.14-stdlib:amd64. Preparing to unpack .../08-libpython3.14-stdlib_3.14.7-5_amd64.deb ... Unpacking libpython3.14-stdlib:amd64 (3.14.7-5) ... Selecting previously unselected package python3.14. Preparing to unpack .../09-python3.14_3.14.7-5_amd64.deb ... Unpacking python3.14 (3.14.7-5) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../10-libpython3-stdlib_3.14.7-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3-minimal (3.14.7-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6282 files and directories currently installed.) Preparing to unpack .../python3_3.14.7-3_amd64.deb ... Unpacking python3 (3.14.7-3) ... Preparing to unpack .../libudev1_262-1_amd64.deb ... Unpacking libudev1:amd64 (262-1) over (261.2-1) ... Setting up libudev1:amd64 (262-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6303 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.42.4-1_amd64.deb ... Unpacking bsdutils (1:2.42.4-1) over (1:2.42.3-1) ... Preparing to unpack .../ncbi-vdb-data_3.4.1+dfsg-1_all.deb ... Unpacking ncbi-vdb-data (3.4.1+dfsg-1) over (3.2.1+dfsg-2) ... Preparing to unpack .../libncbi-vdb3_3.4.1+dfsg-1_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.4.1+dfsg-1) over (3.2.1+dfsg-2+b1) ... Preparing to unpack .../libncbi-wvdb3_3.4.1+dfsg-1_amd64.deb ... Unpacking libncbi-wvdb3:amd64 (3.4.1+dfsg-1) over (3.2.1+dfsg-2+b1) ... Preparing to unpack .../sra-toolkit_3.4.1+dfsg-2_amd64.deb ... Unpacking sra-toolkit (3.4.1+dfsg-2) over (3.2.1+dfsg-6+b3) ... Setting up media-types (14.0.0) ... Setting up bsdutils (1:2.42.4-1) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up mount (2.42.4-1) ... Setting up netbase (6.6) ... Setting up readline-common (8.3-4) ... Setting up login (1:4.16.0-2+really2.42.4-1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libpython3.14-stdlib:amd64 (3.14.7-5) ... Setting up python3.14 (3.14.7-5) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3 (3.14.7-3) ... Setting up ncbi-vdb-data (3.4.1+dfsg-1) ... Setting up libncbi-vdb3:amd64 (3.4.1+dfsg-1) ... Setting up libncbi-wvdb3:amd64 (3.4.1+dfsg-1) ... Setting up sra-toolkit (3.4.1+dfsg-2) ... Processing triggers for libc-bin (2.43-6) ... 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', '-yf', 'dist-upgrade'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m19.3s DUMP: 3ea30317eb55d031c83f79b0c1239633 - 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'show', '--no-all-versions', 'sra-toolkit'] 0m19.5s DUMP: Package: sra-toolkit Source: sra-sdk Version: 3.4.1+dfsg-2 Installed-Size: 17393 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libhdf5-320 (>= 2.1.0), libmagic1t64 (>= 5.12), libncbi-vdb3 (>= 3.4.1+dfsg), libncbi-wvdb3 (>= 3.4.1+dfsg), libre2-11-absl20260526, libstdc++6 (>= 14), libxml2-16 (>= 2.14.1), zlib1g (>= 1:1.2.2) Recommends: med-config Description-en: utilities for the NCBI Sequence Read Archive Tools for reading the SRA archive, generally by converting individual runs into some commonly used format such as fastq. . The textual dumpers "sra-dump" and "vdb-dump" are provided in this release as an aid in visual inspection. It is likely that their actual output formatting will be changed in the near future to a stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON THE OUTPUT FORMAT SEEN IN THIS RELEASE. . Other tools distributed in this package are: abi-dump, abi-load align-info bam-load cache-mgr cg-load copycat fasterq-dump fastq-dump, fastq-load helicos-load illumina-dump, illumina-load kar kdbmeta latf-load pacbio-load prefetch rcexplain remote-fuser sff-dump, sff-load sra-pileup, sra-sort, sra-stat, srapath srf-load test-sra vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock, vdb-passwd, vdb-unlock, vdb-validate . The "help" information will be improved in near future releases, and the tool options will become standardized across the set. More documentation will also be provided documentation on the NCBI web site. . Tool options may change in the next release. Version 1 tool options will remain supported wherever possible in order to preserve operation of any existing scripts. Description-md5: 1a61cd8ef6f417d5f86c6c13697e7a05 Homepage: https://github.com/ncbi/sra-tools/ Commands: abi-dump, abi-load, align-cache, align-info, bam-load, ccextract, cg-load, check-corrupt, check-redact, compute-coverage, copycat, dump-blob-boundaries, dump-ref-fasta, fastconv, fasterq-dump, fastq-dump, fastq-load, general-loader, helicos-load, illumina-dump, illumina-load, kar, kar+, kar+meta, kdbmeta, latf-load, make-read-filter, md5cp, meta-cmp, meta-copy, meta-repair, ngs-pileup, pacbio-load, pacbio-loadxml, prefetch, rcexplain, read-filter-redact, ref-variation, sam-dump, samview, sff-dump, sff-load, sharq, sra-add-fp, sra-info, sra-pileup, sra-search, sra-sort, sra-sort-cg, sra-stat, srapath, srf-load, test-sra, var-expand, vdb-config, vdb-copy, vdb-decrypt, vdb-diff, vdb-dump, vdb-encrypt, vdb-lock, vdb-sql, vdb-unlock, vdb-validate Section: science Priority: optional Filename: pool/main/s/sra-sdk/sra-toolkit_3.4.1+dfsg-2_amd64.deb Size: 7112312 MD5sum: 899edc484dc1a3d5c782e47ba765357e SHA256: c0256f69513c04a29e9fcb1e6aceae240dcf1682e350c2a56dbc6ce586ebeb30 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'show', '--no-all-versions', 'sra-toolkit'] 0m19.5s INFO: apt-cache knows about the following packages: sra-toolkit 0m19.5s INFO: Running scripts pre_install 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_database-server'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_database-server'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_exceptions'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_exceptions'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_extras'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_extras'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'policy'] 0m19.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'policy'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'policy', 'sra-toolkit'] 0m19.6s DUMP: sra-toolkit: Installed: 3.4.1+dfsg-2 Candidate: 3.4.1+dfsg-2 Version table: *** 3.4.1+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'policy', 'sra-toolkit'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', '-y', 'install', 'sra-toolkit'] 0m20.8s DUMP: Reading package lists... Building dependency tree... Reading state information... sra-toolkit is already the newest version (3.4.1+dfsg-2). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', '-y', 'install', 'sra-toolkit'] 0m20.8s INFO: Running scripts post_install 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_install_exceptions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_install_exceptions'] 0m20.8s INFO: Running scripts post_distupgrade 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m21.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m21.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m21.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m21.6s INFO: Running scripts pre_install 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_database-server'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_database-server'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_exceptions'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_exceptions'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_extras'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_extras'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'policy'] 0m21.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'policy'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'policy', 'sra-toolkit'] 0m21.7s DUMP: sra-toolkit: Installed: 3.4.1+dfsg-2 Candidate: 3.4.1+dfsg-2 Version table: *** 3.4.1+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-cache', 'policy', 'sra-toolkit'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', '-y', 'install', 'sra-toolkit=3.4.1+dfsg-2'] 0m22.5s DUMP: Reading package lists... Building dependency tree... Reading state information... sra-toolkit is already the newest version (3.4.1+dfsg-2). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', '-y', 'install', 'sra-toolkit=3.4.1+dfsg-2'] 0m22.5s INFO: Running scripts post_install 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_install_exceptions'] 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_install_exceptions'] 0m22.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m23.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m23.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', '-ac', '--ignore-obsolete'] 0m23.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', '-ac', '--ignore-obsolete'] 0m23.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.8s DUMP: 0.17.5+b5 0m23.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.8s INFO: Running adequate version 0.17.5+b5 now. 0m23.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'sra-toolkit'] 0m24.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'sra-toolkit'] 0m24.5s INFO: Running scripts pre_remove 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_remove_exceptions'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/pre_remove_exceptions'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.0s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libabsl20260526:amd64 libabsl20260526 20260526.0-2+b1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-6 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-6 install ok installed libc6:amd64 libc6 2.43-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libexpat1:amd64 libexpat1 2.8.5-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhdf5-320:amd64 libhdf5-320 2.2.0+repack-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmagic-mgc libmagic-mgc 1:5.47-4 install ok installed libmagic1t64:amd64 libmagic1t64 1:5.47-4 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.7-3 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.7-3 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.7-3 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.4.1+dfsg-1 install ok installed libncbi-wvdb3:amd64 libncbi-wvdb3 3.4.1+dfsg-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.7-3 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.7-5 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.7-5 install ok installed libre2-11:amd64 libre2-11 20251105-1+b2 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libsz2:amd64 libsz2 1.1.7-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxml2-16:amd64 libxml2-16 2.15.4+dfsg-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.4-1 install ok installed ncbi-vdb-data ncbi-vdb-data 3.4.1+dfsg-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed python3 python3 3.14.7-3 install ok installed python3-minimal python3-minimal 3.14.7-3 install ok installed python3.14 python3.14 3.14.7-5 install ok installed python3.14-minimal python3.14-minimal 3.14.7-5 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sra-toolkit sra-toolkit 3.4.1+dfsg-2 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026c-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', 'remove', '--allow-remove-essential', 'libabsl20260526:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libhdf5-320:amd64', 'libmagic-mgc', 'libmagic1t64:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncbi-wvdb3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libre2-11:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libsz2:amd64', 'libxml2-16:amd64', 'media-types', 'ncbi-vdb-data', 'netbase', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'sra-toolkit'] 0m27.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: libabsl20260526 libexpat1 libffi8 libhdf5-320 libmagic-mgc libmagic1t64 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncbi-wvdb3 libncursesw6 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libre2-11 libreadline8t64 libsqlite3-0 libsz2 libxml2-16 media-types ncbi-vdb-data netbase python3 python3-minimal python3.14 python3.14-minimal readline-common sra-toolkit 0 upgraded, 0 newly installed, 29 to remove and 0 not upgraded. After this operation, 80.4 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6287 files and directories currently installed.) Removing sra-toolkit (3.4.1+dfsg-2) ... Removing libre2-11:amd64 (20251105-1+b2) ... Removing libabsl20260526:amd64 (20260526.0-2+b1) ... Removing libncbi-vdb3:amd64 (3.4.1+dfsg-1) ... Removing libncbi-wvdb3:amd64 (3.4.1+dfsg-1) ... Removing ncbi-vdb-data (3.4.1+dfsg-1) ... Removing python3 (3.14.7-3) ... Removing python3.14 (3.14.7-5) ... Removing python3-minimal (3.14.7-3) ... Removing python3.14-minimal (3.14.7-5) ... Removing libexpat1:amd64 (2.8.5-1) ... Removing libpython3-stdlib:amd64 (3.14.7-3) ... Removing libpython3.14-stdlib:amd64 (3.14.7-5) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.8.0-2) ... Removing libhdf5-320:amd64 (2.2.0+repack-5) ... Removing libmagic1t64:amd64 (1:5.47-4) ... Removing libmagic-mgc (1:5.47-4) ... Removing libmbedtls21:amd64 (3.6.7-3) ... Removing libmbedx509-7:amd64 (3.6.7-3) ... Removing libmbedcrypto16:amd64 (3.6.7-3) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libpython3.14-minimal:amd64 (3.14.7-5) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing libsz2:amd64 (1.1.7-1) ... Removing libxml2-16:amd64 (2.15.4+dfsg-1) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.43-6) ... 0m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', 'remove', '--allow-remove-essential', 'libabsl20260526:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libhdf5-320:amd64', 'libmagic-mgc', 'libmagic1t64:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncbi-wvdb3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libre2-11:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libsz2:amd64', 'libxml2-16:amd64', 'media-types', 'ncbi-vdb-data', 'netbase', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'sra-toolkit'] 0m27.8s INFO: Running scripts post_remove 0m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_remove_exceptions'] 0m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_remove_exceptions'] 0m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg', '--purge', 'libabsl20260526:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libhdf5-320:amd64', 'libmagic-mgc', 'libmagic1t64:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncbi-wvdb3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libre2-11:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libsz2:amd64', 'libxml2-16:amd64', 'media-types', 'ncbi-vdb-data', 'netbase', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m27.8s DUMP: dpkg: warning: ignoring request to remove libabsl20260526 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libhdf5-320 which is not installed dpkg: warning: ignoring request to remove libmagic-mgc which is not installed (Reading database ... 4977 files and directories currently installed.) Purging configuration files for libmagic1t64:amd64 (1:5.47-4) ... dpkg: warning: ignoring request to remove libmbedcrypto16 which is not installed dpkg: warning: ignoring request to remove libmbedtls21 which is not installed dpkg: warning: ignoring request to remove libmbedx509-7 which is not installed dpkg: warning: ignoring request to remove libncbi-vdb3 which is not installed dpkg: warning: ignoring request to remove libncbi-wvdb3 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.14-minimal:amd64 (3.14.7-5) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed dpkg: warning: ignoring request to remove libre2-11 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libsz2 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for ncbi-vdb-data (3.4.1+dfsg-1) ... Purging configuration files for netbase (6.6) ... Purging configuration files for python3 (3.14.7-3) ... dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.7-5) ... Purging configuration files for readline-common (8.3-4) ... 0m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg', '--purge', 'libabsl20260526:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libhdf5-320:amd64', 'libmagic-mgc', 'libmagic1t64:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncbi-wvdb3:amd64', 'libncursesw6:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libre2-11:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libsz2:amd64', 'libxml2-16:amd64', 'media-types', 'ncbi-vdb-data', 'netbase', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg', '--purge', 'sra-toolkit'] 0m27.8s DUMP: (Reading database ... 4967 files and directories currently installed.) Purging configuration files for sra-toolkit (3.4.1+dfsg-2) ... 0m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg', '--purge', 'sra-toolkit'] 0m27.8s INFO: Running scripts post_purge 0m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_purge_exceptions'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_purge_exceptions'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg', '--purge', '--pending'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg', '--purge', '--pending'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg', '--remove', '--pending'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg', '--remove', '--pending'] 0m27.9s INFO: Running scripts post_test 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_test_exceptions'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'tmp/scripts/post_test_exceptions'] 0m27.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m28.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg-divert', '--list'] 0m28.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'dpkg-divert', '--list'] 0m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', 'clean'] 0m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp13mxpznt', 'apt-get', 'clean'] 0m28.2s DEBUG: Recording chroot state 0m29.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/shm'] 0m29.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/shm'] 0m29.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/console'] 0m29.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/console'] 0m29.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/ptmx'] 0m29.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/ptmx'] 0m29.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/pts'] 0m29.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/dev/pts'] 0m29.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/proc'] 0m29.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp13mxpznt/proc'] 0m29.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m29.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp13mxpznt'] 0m29.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp13mxpznt 0m29.4s INFO: PASS: Upgrading between Debian distributions. 0m29.4s INFO: PASS: All tests. 0m29.4s INFO: piuparts run ends. ret=0 End: 2026-09-28 09:30:33 GMT