Start: 2025-11-21 03:32:20 GMT [testing] Package: surankco Version: 0.0.r5+dfsg-4 Installed-Size: 159 Maintainer: Debian Med Packaging Team Architecture: all Depends: libhtsjdk-java, r-base-core, r-cran-mass, r-cran-optparse, r-cran-randomforest Description: Supervised Ranking of Contigs in de novo Assemblies Homepage: https://sourceforge.net/projects/surankco/ Description-md5: 713e9eb3de12c80c60bcafd63bb396f3 Section: science Priority: optional Filename: pool/main/s/surankco/surankco_0.0.r5+dfsg-4_all.deb Size: 79424 MD5sum: 3cc03d398926a8818536a0fed7b88fa4 SHA256: 04654d2ba2b4f9f28024db20f5f24a62a8f7a1faff9a62d0286ec0e68626d54f [sid] Package: surankco Version: 0.0.r5+dfsg-5 Installed-Size: 159 Maintainer: Debian Med Packaging Team Architecture: all Depends: libhtsjdk-java, r-base-core, r-cran-mass, r-cran-optparse, r-cran-randomforest Description: Supervised Ranking of Contigs in de novo Assemblies Homepage: https://sourceforge.net/projects/surankco/ Description-md5: 713e9eb3de12c80c60bcafd63bb396f3 Section: science Priority: optional Filename: pool/main/s/surankco/surankco_0.0.r5+dfsg-5_all.deb Size: 79532 MD5sum: 05d41bee3721a07365b1becec3761d77 SHA256: c45da5ec0e5d3874aa64faba853ff64f3db1f0717bd0b82679816ee0a710df9d Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt surankco=0.0.r5+dfsg-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt surankco=0.0.r5+dfsg-5 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-41-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.158-1 (2025-11-09) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpcp2bic83 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpcp2bic83 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpcp2bic83/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', 'update'] 0m2.7s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [148 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9667 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6451 kB] Fetched 16.3 MB in 2s (9484 kB/s) Reading package lists... 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', 'update'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', '-yf', 'dist-upgrade'] 0m8.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following NEW packages will be installed: gcc-15-base The following packages will be upgraded: apt base-files base-passwd bash bsdutils diffutils gcc-14-base grep init-system-helpers libapt-pkg7.0 libaudit-common libaudit1 libblkid1 libcrypt1 libdb5.3t64 libdebconfclient0 libgcc-s1 libgmp10 libhogweed6t64 liblastlog2-2 liblz4-1 liblzma5 libmount1 libnettle8t64 libpcre2-8-0 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libssl3t64 libstdc++6 libsystemd0 libudev1 libuuid1 libzstd1 login login.defs mount openssl-provider-legacy passwd sysvinit-utils tzdata util-linux 45 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 18.1 MB of archives. After this operation, 342 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian forky/main amd64 bash amd64 5.3-1 [1556 kB] Get:3 http://deb.debian.org/debian forky/main amd64 diffutils amd64 1:3.12-1 [405 kB] Get:4 http://deb.debian.org/debian forky/main amd64 grep amd64 3.12-1 [443 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.2-4 [38.7 kB] Get:6 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.2-4 [93.5 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.2-4 [174 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.2-4 [211 kB] Get:9 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.2-4 [145 kB] Get:10 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.2-4 [1163 kB] Get:11 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.2-4 [163 kB] Get:12 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libselinux1 amd64 3.9-2 [85.4 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libsystemd0 amd64 259~rc1-1 [469 kB] Get:15 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-7 [53.3 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-7 [71.7 kB] Get:17 http://deb.debian.org/debian forky/main amd64 liblz4-1 amd64 1.10.0-6 [70.5 kB] Get:18 http://deb.debian.org/debian forky/main amd64 liblzma5 amd64 5.8.1-2 [310 kB] Get:19 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.5.4-1 [308 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libzstd1 amd64 1.5.7+dfsg-2 [308 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.5.4-1 [2446 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-7 [736 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libudev1 amd64 259~rc1-1 [157 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.12 [1229 kB] Get:25 http://deb.debian.org/debian forky/main amd64 libdebconfclient0 amd64 0.281 [10.8 kB] Get:26 http://deb.debian.org/debian forky/main amd64 base-passwd amd64 3.6.8 [54.6 kB] Get:27 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.12 [1520 kB] Get:28 http://deb.debian.org/debian forky/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:29 http://deb.debian.org/debian forky/main amd64 sysvinit-utils amd64 3.15-6 [35.0 kB] Get:30 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.1.2-1 [60.4 kB] Get:32 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.2-4 [105 kB] Get:33 http://deb.debian.org/debian forky/main amd64 libcrypt1 amd64 1:4.5.1-1 [98.0 kB] Get:34 http://deb.debian.org/debian forky/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-10 [709 kB] Get:35 http://deb.debian.org/debian forky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB] Get:36 http://deb.debian.org/debian forky/main amd64 libnettle8t64 amd64 3.10.2-1 [307 kB] Get:37 http://deb.debian.org/debian forky/main amd64 libhogweed6t64 amd64 3.10.2-1 [336 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:39 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.2-4 [29.5 kB] Get:40 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.18.0-2 [211 kB] Get:41 http://deb.debian.org/debian forky/main amd64 libsemanage-common all 3.9-1 [7888 B] Get:42 http://deb.debian.org/debian forky/main amd64 libsepol2 amd64 3.9-2 [300 kB] Get:43 http://deb.debian.org/debian forky/main amd64 libsemanage2 amd64 3.9-1 [96.8 kB] Get:44 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.18.0-2 [1286 kB] Get:45 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get:46 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-10 [52.4 kB] Preconfiguring packages ... Fetched 18.1 MB in 0s (122 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4934 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4933 files and directories currently installed.) Preparing to unpack .../archives/bash_5.3-1_amd64.deb ... Unpacking bash (5.3-1) over (5.2.37-2+b5) ... Setting up bash (5.3-1) ... Installing new version of config file /etc/bash.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4934 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.12-1_amd64.deb ... Unpacking diffutils (1:3.12-1) over (1:3.10-4) ... Setting up diffutils (1:3.12-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4934 files and directories currently installed.) Preparing to unpack .../archives/grep_3.12-1_amd64.deb ... Unpacking grep (3.12-1) over (3.11-4) ... Setting up grep (3.12-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4934 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41.2-4_amd64.deb ... Unpacking libuuid1:amd64 (2.41.2-4) over (2.41-5) ... Setting up libuuid1:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4934 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.2-4_amd64.deb ... Unpacking bsdutils (1:2.41.2-4) over (1:2.41-5) ... Setting up bsdutils (1:2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4931 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41.2-4_amd64.deb ... Unpacking libblkid1:amd64 (2.41.2-4) over (2.41-5) ... Setting up libblkid1:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4931 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.2-4_amd64.deb ... Unpacking libmount1:amd64 (2.41.2-4) over (2.41-5) ... Setting up libmount1:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4931 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.2-4_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.2-4) over (2.41-5) ... Setting up libsmartcols1:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4931 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.2-4_amd64.deb ... Unpacking util-linux (2.41.2-4) over (2.41-5) ... Setting up util-linux (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4902 files and directories currently installed.) Preparing to unpack .../mount_2.41.2-4_amd64.deb ... Unpacking mount (2.41.2-4) over (2.41-5) ... Preparing to unpack .../libpcre2-8-0_10.46-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.46-1) over (10.45-1) ... Setting up libpcre2-8-0:amd64 (10.46-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4902 files and directories currently installed.) Preparing to unpack .../libselinux1_3.9-2_amd64.deb ... Unpacking libselinux1:amd64 (3.9-2) over (3.8.1-1) ... Setting up libselinux1:amd64 (3.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4904 files and directories currently installed.) Preparing to unpack .../libsystemd0_259~rc1-1_amd64.deb ... Unpacking libsystemd0:amd64 (259~rc1-1) over (257.7-1) ... Setting up libsystemd0:amd64 (259~rc1-1) ... Selecting previously unselected package gcc-15-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4904 files and directories currently installed.) Preparing to unpack .../gcc-15-base_15.2.0-7_amd64.deb ... Unpacking gcc-15-base:amd64 (15.2.0-7) ... Setting up gcc-15-base:amd64 (15.2.0-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../libgcc-s1_15.2.0-7_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-7) over (14.2.0-19) ... Setting up libgcc-s1:amd64 (15.2.0-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.10.0-6_amd64.deb ... Unpacking liblz4-1:amd64 (1.10.0-6) over (1.10.0-4) ... Setting up liblz4-1:amd64 (1.10.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../liblzma5_5.8.1-2_amd64.deb ... Unpacking liblzma5:amd64 (5.8.1-2) over (5.8.1-1) ... Setting up liblzma5:amd64 (5.8.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.5.4-1_amd64.deb ... Unpacking openssl-provider-legacy (3.5.4-1) over (3.5.1-1) ... Setting up openssl-provider-legacy (3.5.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.7+dfsg-2_amd64.deb ... Unpacking libzstd1:amd64 (1.5.7+dfsg-2) over (1.5.7+dfsg-1) ... Setting up libzstd1:amd64 (1.5.7+dfsg-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.5.4-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.5.4-1) over (3.5.1-1) ... Setting up libssl3t64:amd64 (3.5.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-7_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-7) over (14.2.0-19) ... Setting up libstdc++6:amd64 (15.2.0-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../libudev1_259~rc1-1_amd64.deb ... Unpacking libudev1:amd64 (259~rc1-1) over (257.7-1) ... Setting up libudev1:amd64 (259~rc1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.12_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.12) over (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.1.12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4910 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.281_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.281) over (0.280) ... Setting up libdebconfclient0:amd64 (0.281) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4910 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.8_amd64.deb ... Unpacking base-passwd (3.6.8) over (3.6.7) ... Setting up base-passwd (3.6.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4910 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.12_amd64.deb ... Unpacking apt (3.1.12) over (3.0.3) ... Setting up apt (3.1.12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69_all.deb ... Unpacking init-system-helpers (1.69) over (1.68) ... Setting up init-system-helpers (1.69) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4910 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.15-6_amd64.deb ... Unpacking sysvinit-utils (3.15-6) over (3.14-4) ... Setting up sysvinit-utils (3.15-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4910 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.1.2-1_all.deb ... Unpacking libaudit-common (1:4.1.2-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4910 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.1.2-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.1.2-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.2-4_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.2-4) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../libcrypt1_1%3a4.5.1-1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.5.1-1) over (1:4.4.38-1) ... Setting up libcrypt1:amd64 (1:4.5.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4901 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-10_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-10) over (5.3.28+dfsg2-9) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4901 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-5) over (2:6.3.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4901 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.10.2-1_amd64.deb ... Unpacking libnettle8t64:amd64 (3.10.2-1) over (3.10.1-1) ... Setting up libnettle8t64:amd64 (3.10.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4901 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.10.2-1_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.10.2-1) over (3.10.1-1) ... Setting up libhogweed6t64:amd64 (3.10.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4901 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.46.1-8_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-8) over (3.46.1-7) ... Setting up libsqlite3-0:amd64 (3.46.1-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4901 files and directories currently installed.) Preparing to unpack .../liblastlog2-2_2.41.2-4_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.2-4) over (2.41-5) ... Setting up liblastlog2-2:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4901 files and directories currently installed.) Preparing to unpack .../0-login.defs_1%3a4.18.0-2_all.deb ... Unpacking login.defs (1:4.18.0-2) over (1:4.17.4-2) ... Preparing to unpack .../1-libsemanage-common_3.9-1_all.deb ... Unpacking libsemanage-common (3.9-1) over (3.8.1-1) ... Preparing to unpack .../2-libsepol2_3.9-2_amd64.deb ... Unpacking libsepol2:amd64 (3.9-2) over (3.8.1-1) ... Preparing to unpack .../3-libsemanage2_3.9-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.9-1) over (3.8.1-1) ... Preparing to unpack .../4-passwd_1%3a4.18.0-2_amd64.deb ... Unpacking passwd (1:4.18.0-2) over (1:4.17.4-2) ... Preparing to unpack .../5-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) over (2025b-4) ... Preparing to unpack .../6-gcc-14-base_14.3.0-10_amd64.deb ... Unpacking gcc-14-base:amd64 (14.3.0-10) over (14.2.0-19) ... Setting up gcc-14-base:amd64 (14.3.0-10) ... Setting up login.defs (1:4.18.0-2) ... Setting up libsemanage-common (3.9-1) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Nov 21 03:32:28 UTC 2025. Universal Time is now: Fri Nov 21 03:32:28 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsepol2:amd64 (3.9-2) ... Setting up mount (2.41.2-4) ... Setting up libsemanage2:amd64 (3.9-1) ... Setting up login (1:4.16.0-2+really2.41.2-4) ... Setting up passwd (1:4.18.0-2) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for debianutils (5.23.2) ... 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', '-yf', 'dist-upgrade'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.5s DUMP: f608d1f0ac7d3dc4b0df9c92c199d2cb - 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.5s INFO: Running scripts post_setup 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_setup_dummy_users'] 0m11.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_setup_dummy_users'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_setup_forbid_home'] 0m11.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_setup_forbid_home'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_setup_minimize'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_setup_minimize'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_setup_zz_backports'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_setup_zz_backports'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.4s DUMP: install ok installed apt apt 3.1.12 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.2-4 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-10 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-7 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.12 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblkid1:amd64 libblkid1 2.41.2-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.281 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-7 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.2-4 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-6 install ok installed liblzma5:amd64 liblzma5 5.8.1-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.2-4 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.9-2 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.2-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssl3t64:amd64 libssl3t64 3.5.4-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-7 install ok installed libsystemd0:amd64 libsystemd0 259~rc1-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 259~rc1-1 install ok installed libuuid1:amd64 libuuid1 2.41.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-2 install ok installed login login 1:4.16.0-2+really2.41.2-4 install ok installed login.defs login.defs 1:4.18.0-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.2-4 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.4-1 install ok installed passwd passwd 1:4.18.0-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.15-6 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m11.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 0m11.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 0m11.8s INFO: Running scripts is_testable 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/is_testable_uninstallable'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/is_testable_uninstallable'] 0m11.8s INFO: Running scripts pre_test 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_test_exceptions'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_test_exceptions'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_test_root_password'] 0m11.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_test_root_password'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'show', '--no-all-versions', 'surankco'] 0m12.1s DUMP: Package: surankco Version: 0.0.r5+dfsg-4 Installed-Size: 159 Maintainer: Debian Med Packaging Team Architecture: all Depends: libhtsjdk-java, r-base-core, r-cran-mass, r-cran-optparse, r-cran-randomforest Description-en: Supervised Ranking of Contigs in de novo Assemblies SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet. Description-md5: 713e9eb3de12c80c60bcafd63bb396f3 Homepage: https://sourceforge.net/projects/surankco/ Section: science Priority: optional Filename: pool/main/s/surankco/surankco_0.0.r5+dfsg-4_all.deb Size: 79424 MD5sum: 3cc03d398926a8818536a0fed7b88fa4 SHA256: 04654d2ba2b4f9f28024db20f5f24a62a8f7a1faff9a62d0286ec0e68626d54f 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'show', '--no-all-versions', 'surankco'] 0m12.1s INFO: apt-cache knows about the following packages: surankco 0m12.1s INFO: Running scripts pre_install 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_database-server'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_database-server'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_exceptions'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_exceptions'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_extras'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_extras'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'policy'] 0m12.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'policy'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'policy', 'surankco'] 0m12.3s DUMP: surankco: Installed: (none) Candidate: 0.0.r5+dfsg-4 Version table: 0.0.r5+dfsg-4 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'policy', 'surankco'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', '-y', 'install', 'surankco'] 0m28.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: ca-certificates ca-certificates-java default-jre-headless fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono java-common junit4 libapache-pom-java libatomic1 libblas3 libbrotli1 libcairo2 libcom-err2 libcommons-beanutils-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcurl4t64 libdatrie1 libdeflate0 libexpat1 libezmorph-java libffi8 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libhamcrest-java libharfbuzz0b libhtsjdk-java libice6 libicu76 libidn2-0 libjaxen-java libjbig0 libjpeg62-turbo libjson-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-ngs3 libncbi-vdb3 libncursesw6 libnghttp2-14 libnghttp3-9 libngs-java libngs-jni libngtcp2-16 libngtcp2-crypto-ossl0 libnspr4 libnss3 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcsclite1 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libreadline8t64 librhino-java librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libslf4j-java libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libssh2-1t64 libtasn1-6 libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libunistring5 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxerces2-java libxext6 libxft2 libxml-commons-external-java libxml-commons-resolver1.1-java libxom-java libxrender1 libxss1 libxt6t64 ncbi-vdb-data openjdk-21-jre-headless openssl procps r-base-core r-cran-getopt r-cran-mass r-cran-optparse r-cran-randomforest readline-common sensible-utils ucf unzip x11-common xdg-utils zip Suggested packages: default-jre libcommons-collections3-java-doc libcommons-collections4-java-doc libasm-java libxz-java libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java low-memory-monitor gnutls-bin krb5-doc krb5-user picard-tools python3 libdom4j-java libjdom1-java liblcms2-utils libngs-java-doc pcscd rhino tcl8.6 tk8.6 libxerces2-java-doc libxml-commons-resolver1.1-java-doc libxom-java-doc libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rcolorbrewer readline-doc Recommended packages: libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3:any libcups2t64 libasound2t64 psmisc linux-sysctl-defaults r-recommended r-base-dev r-doc-html r-cran-knitr r-cran-stringr r-cran-testthat libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates ca-certificates-java default-jre-headless fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono java-common junit4 libapache-pom-java libatomic1 libblas3 libbrotli1 libcairo2 libcom-err2 libcommons-beanutils-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcurl4t64 libdatrie1 libdeflate0 libexpat1 libezmorph-java libffi8 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libhamcrest-java libharfbuzz0b libhtsjdk-java libice6 libicu76 libidn2-0 libjaxen-java libjbig0 libjpeg62-turbo libjson-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-ngs3 libncbi-vdb3 libncursesw6 libnghttp2-14 libnghttp3-9 libngs-java libngs-jni libngtcp2-16 libngtcp2-crypto-ossl0 libnspr4 libnss3 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcsclite1 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libreadline8t64 librhino-java librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libslf4j-java libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libssh2-1t64 libtasn1-6 libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libunistring5 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxerces2-java libxext6 libxft2 libxml-commons-external-java libxml-commons-resolver1.1-java libxom-java libxrender1 libxss1 libxt6t64 ncbi-vdb-data openjdk-21-jre-headless openssl procps r-base-core r-cran-getopt r-cran-mass r-cran-optparse r-cran-randomforest readline-common sensible-utils surankco ucf unzip x11-common xdg-utils zip 0 upgraded, 140 newly installed, 0 to remove and 0 not upgraded. Need to get 121 MB of archives. After this operation, 386 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:4 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:5 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get:6 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:7 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get:8 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get:9 http://deb.debian.org/debian forky/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:10 http://deb.debian.org/debian forky/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:11 http://deb.debian.org/debian forky/main amd64 ucf all 3.0052 [43.3 kB] Get:12 http://deb.debian.org/debian forky/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get:13 http://deb.debian.org/debian forky/main amd64 java-common all 0.76 [6776 B] Get:14 http://deb.debian.org/debian forky/main amd64 liblcms2-2 amd64 2.17-1 [163 kB] Get:15 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libnspr4 amd64 2:4.38.2-1 [111 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libnss3 amd64 2:3.117-1 [1429 kB] Get:18 http://deb.debian.org/debian forky/main amd64 libpcsclite1 amd64 2.4.0-2 [55.8 kB] Get:19 http://deb.debian.org/debian forky/main amd64 openjdk-21-jre-headless amd64 21.0.9+10-1 [41.9 MB] Get:20 http://deb.debian.org/debian forky/main amd64 default-jre-headless amd64 2:1.21-76 [3192 B] Get:21 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:24 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:25 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:26 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get:27 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get:28 http://deb.debian.org/debian forky/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get:29 http://deb.debian.org/debian forky/main amd64 libhamcrest-java all 2.2-2 [121 kB] Get:30 http://deb.debian.org/debian forky/main amd64 junit4 all 4.13.2-5 [350 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libapache-pom-java all 33-2 [5852 B] Get:32 http://deb.debian.org/debian forky/main amd64 libatomic1 amd64 15.2.0-7 [9500 B] Get:33 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get:34 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get:35 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:36 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:37 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:39 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:40 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:41 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:42 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:43 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:44 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:45 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:46 http://deb.debian.org/debian forky/main amd64 libcommons-collections3-java all 3.2.2-3 [530 kB] Get:47 http://deb.debian.org/debian forky/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:48 http://deb.debian.org/debian forky/main amd64 libcommons-logging-java all 1.3.0-2 [68.6 kB] Get:49 http://deb.debian.org/debian forky/main amd64 libcommons-beanutils-java all 1.10.1-1.1 [231 kB] Get:50 http://deb.debian.org/debian forky/main amd64 libcommons-codec-java all 1.18.0-1 [304 kB] Get:51 http://deb.debian.org/debian forky/main amd64 libcommons-collections4-java all 4.4-2 [682 kB] Get:52 http://deb.debian.org/debian forky/main amd64 libcommons-io-java all 2.19.0-1 [524 kB] Get:53 http://deb.debian.org/debian forky/main amd64 libcommons-compress-java all 1.27.1-2 [641 kB] Get:54 http://deb.debian.org/debian forky/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get:55 http://deb.debian.org/debian forky/main amd64 libcommons-lang3-java all 3.17.0-2 [641 kB] Get:56 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get:57 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get:58 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get:59 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get:60 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:61 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get:62 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get:63 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:64 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get:65 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get:66 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get:67 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get:68 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get:69 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get:70 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:71 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get:72 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get:73 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:74 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get:75 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get:76 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:77 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0-2 [409 kB] Get:78 http://deb.debian.org/debian forky/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get:79 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:80 http://deb.debian.org/debian forky/main amd64 libezmorph-java all 1.0.6-4 [75.9 kB] Get:81 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get:82 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get:83 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.86.1-2 [1547 kB] Get:84 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 15.2.0-7 [140 kB] Get:85 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get:86 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get:87 http://deb.debian.org/debian forky/main amd64 libslf4j-java all 1.7.32-2 [142 kB] Get:88 http://deb.debian.org/debian forky/main amd64 libjaxen-java all 1.2.0-1 [214 kB] Get:89 http://deb.debian.org/debian forky/main amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] Get:90 http://deb.debian.org/debian forky/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get:91 http://deb.debian.org/debian forky/main amd64 libxerces2-java all 2.12.2-1 [1440 kB] Get:92 http://deb.debian.org/debian forky/main amd64 libxom-java all 1.3.9-1 [174 kB] Get:93 http://deb.debian.org/debian forky/main amd64 libjson-java all 3.2.0+dfsg-2 [142 kB] Get:94 http://deb.debian.org/debian forky/main amd64 libmbedcrypto16 amd64 3.6.4-2 [360 kB] Get:95 http://deb.debian.org/debian forky/main amd64 libmbedx509-7 amd64 3.6.4-2 [151 kB] Get:96 http://deb.debian.org/debian forky/main amd64 libmbedtls21 amd64 3.6.4-2 [242 kB] Get:97 http://deb.debian.org/debian forky/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:98 http://deb.debian.org/debian forky/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get:99 http://deb.debian.org/debian forky/main amd64 libncbi-ngs3 amd64 3.2.1+dfsg-5 [159 kB] Get:100 http://deb.debian.org/debian forky/main amd64 libngs-jni amd64 3.2.1+dfsg-5 [27.8 kB] Get:101 http://deb.debian.org/debian forky/main amd64 libngs-java amd64 3.2.1+dfsg-5 [114 kB] Get:102 http://deb.debian.org/debian forky/main amd64 librhino-java all 1.7.15-1 [1382 kB] Get:103 http://deb.debian.org/debian forky/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.7 kB] Get:104 http://deb.debian.org/debian forky/main amd64 libsnappy-jni amd64 1.1.10.8-1 [6548 B] Get:105 http://deb.debian.org/debian forky/main amd64 libsnappy-java all 1.1.10.8-1 [87.8 kB] Get:106 http://deb.debian.org/debian forky/main amd64 libhtsjdk-java all 4.1.3+dfsg-2 [1841 kB] Get:107 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get:108 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:109 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get:110 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:111 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get:112 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:113 http://deb.debian.org/debian forky/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:114 http://deb.debian.org/debian forky/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:115 http://deb.debian.org/debian forky/main amd64 libpango-1.0-0 amd64 1.56.3-2 [239 kB] Get:116 http://deb.debian.org/debian forky/main amd64 libpangoft2-1.0-0 amd64 1.56.3-2 [62.0 kB] Get:117 http://deb.debian.org/debian forky/main amd64 libpangocairo-1.0-0 amd64 1.56.3-2 [38.1 kB] Get:118 http://deb.debian.org/debian forky/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get:119 http://deb.debian.org/debian forky/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get:120 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get:121 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:122 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get:123 http://deb.debian.org/debian forky/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get:124 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:125 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get:126 http://deb.debian.org/debian forky/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get:127 http://deb.debian.org/debian forky/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get:128 http://deb.debian.org/debian forky/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:129 http://deb.debian.org/debian forky/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:130 http://deb.debian.org/debian forky/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get:131 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get:132 http://deb.debian.org/debian forky/main amd64 zip amd64 3.0-15 [235 kB] Get:133 http://deb.debian.org/debian forky/main amd64 unzip amd64 6.0-29 [173 kB] Get:134 http://deb.debian.org/debian forky/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:135 http://deb.debian.org/debian forky/main amd64 r-base-core amd64 4.5.2-1 [28.6 MB] Get:136 http://deb.debian.org/debian forky/main amd64 r-cran-getopt all 1.20.4-1 [38.6 kB] Get:137 http://deb.debian.org/debian forky/main amd64 r-cran-mass amd64 7.3-65-1 [1113 kB] Get:138 http://deb.debian.org/debian forky/main amd64 r-cran-optparse all 1.7.5-1 [83.8 kB] Get:139 http://deb.debian.org/debian forky/main amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] Get:140 http://deb.debian.org/debian forky/main amd64 surankco all 0.0.r5+dfsg-4 [79.4 kB] Preconfiguring packages ... Fetched 121 MB in 1s (133 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4905 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../006-openssl_3.5.4-1_amd64.deb ... Unpacking openssl (3.5.4-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../007-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../008-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../009-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../010-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../011-ca-certificates-java_20240118_all.deb ... Unpacking ca-certificates-java (20240118) ... Selecting previously unselected package java-common. Preparing to unpack .../012-java-common_0.76_all.deb ... Unpacking java-common (0.76) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../013-liblcms2-2_2.17-1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.17-1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../014-libjpeg62-turbo_1%3a2.1.5-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-4) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../015-libnspr4_2%3a4.38.2-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.38.2-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../016-libnss3_2%3a3.117-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.117-1) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../017-libpcsclite1_2.4.0-2_amd64.deb ... Unpacking libpcsclite1:amd64 (2.4.0-2) ... Selecting previously unselected package openjdk-21-jre-headless:amd64. Preparing to unpack .../018-openjdk-21-jre-headless_21.0.9+10-1_amd64.deb ... Unpacking openjdk-21-jre-headless:amd64 (21.0.9+10-1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../019-default-jre-headless_2%3a1.21-76_amd64.deb ... Unpacking default-jre-headless (2:1.21-76) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../020-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../021-libpng16-16t64_1.6.50-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.50-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../022-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../023-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../024-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../025-fontconfig-config_2.15.0-2.4_amd64.deb ... Unpacking fontconfig-config (2.15.0-2.4) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../026-libfontconfig1_2.15.0-2.4_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-2.4) ... Selecting previously unselected package fontconfig. Preparing to unpack .../027-fontconfig_2.15.0-2.4_amd64.deb ... Unpacking fontconfig (2.15.0-2.4) ... Selecting previously unselected package libhamcrest-java. Preparing to unpack .../028-libhamcrest-java_2.2-2_all.deb ... Unpacking libhamcrest-java (2.2-2) ... Selecting previously unselected package junit4. Preparing to unpack .../029-junit4_4.13.2-5_all.deb ... Unpacking junit4 (4.13.2-5) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../030-libapache-pom-java_33-2_all.deb ... Unpacking libapache-pom-java (33-2) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../031-libatomic1_15.2.0-7_amd64.deb ... Unpacking libatomic1:amd64 (15.2.0-7) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../032-libblas3_3.12.1-7_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-7) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../033-libpixman-1-0_0.46.4-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.46.4-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../034-libxau6_1%3a1.0.11-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../035-libxdmcp6_1%3a1.1.5-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../036-libxcb1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../037-libx11-data_2%3a1.8.12-1_all.deb ... Unpacking libx11-data (2:1.8.12-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../038-libx11-6_2%3a1.8.12-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.12-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../039-libxcb-render0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../040-libxcb-shm0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../041-libxext6_2%3a1.3.4-1+b3_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b3) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../042-libxrender1_1%3a0.9.12-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.12-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../043-libcairo2_1.18.4-1+b1_amd64.deb ... Unpacking libcairo2:amd64 (1.18.4-1+b1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../044-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libcommons-collections3-java. Preparing to unpack .../045-libcommons-collections3-java_3.2.2-3_all.deb ... Unpacking libcommons-collections3-java (3.2.2-3) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../046-libcommons-parent-java_56-1_all.deb ... Unpacking libcommons-parent-java (56-1) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../047-libcommons-logging-java_1.3.0-2_all.deb ... Unpacking libcommons-logging-java (1.3.0-2) ... Selecting previously unselected package libcommons-beanutils-java. Preparing to unpack .../048-libcommons-beanutils-java_1.10.1-1.1_all.deb ... Unpacking libcommons-beanutils-java (1.10.1-1.1) ... Selecting previously unselected package libcommons-codec-java. Preparing to unpack .../049-libcommons-codec-java_1.18.0-1_all.deb ... Unpacking libcommons-codec-java (1.18.0-1) ... Selecting previously unselected package libcommons-collections4-java. Preparing to unpack .../050-libcommons-collections4-java_4.4-2_all.deb ... Unpacking libcommons-collections4-java (4.4-2) ... Selecting previously unselected package libcommons-io-java. Preparing to unpack .../051-libcommons-io-java_2.19.0-1_all.deb ... Unpacking libcommons-io-java (2.19.0-1) ... Selecting previously unselected package libcommons-compress-java. Preparing to unpack .../052-libcommons-compress-java_1.27.1-2_all.deb ... Unpacking libcommons-compress-java (1.27.1-2) ... Selecting previously unselected package libcommons-jexl2-java. Preparing to unpack .../053-libcommons-jexl2-java_2.1.1-6_all.deb ... Unpacking libcommons-jexl2-java (2.1.1-6) ... Selecting previously unselected package libcommons-lang3-java. Preparing to unpack .../054-libcommons-lang3-java_3.17.0-2_all.deb ... Unpacking libcommons-lang3-java (3.17.0-2) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../055-libnghttp3-9_1.12.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../056-libngtcp2-16_1.16.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.16.0-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../057-libkrb5support0_1.22.1-2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.22.1-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../058-libk5crypto3_1.22.1-2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.22.1-2) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../059-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../060-libkrb5-3_1.22.1-2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.22.1-2) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../061-libgssapi-krb5-2_1.22.1-2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.22.1-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../062-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../063-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../064-libsasl2-modules-db_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../065-libsasl2-2_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../066-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../067-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libngtcp2-crypto-ossl0:amd64. Preparing to unpack .../068-libngtcp2-crypto-ossl0_1.16.0-1_amd64.deb ... Unpacking libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../069-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../070-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../071-libp11-kit0_0.25.9-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.9-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../072-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../073-libgnutls30t64_3.8.10-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.10-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../074-librtmp1_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../075-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../076-libcurl4t64_8.17.0-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.17.0-2) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../077-libdatrie1_0.2.13-4_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.13-4) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../078-libdeflate0_1.23-2_amd64.deb ... Unpacking libdeflate0:amd64 (1.23-2) ... Selecting previously unselected package libezmorph-java. Preparing to unpack .../079-libezmorph-java_1.0.6-4_all.deb ... Unpacking libezmorph-java (1.0.6-4) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../080-libfribidi0_1.0.16-3_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.16-3) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../081-libgfortran5_15.2.0-7_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-7) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../082-libglib2.0-0t64_2.86.1-2_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.86.1-2) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../083-libgomp1_15.2.0-7_amd64.deb ... Unpacking libgomp1:amd64 (15.2.0-7) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../084-libgraphite2-3_1.3.14-11_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-11) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../085-libharfbuzz0b_12.1.0-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (12.1.0-1) ... Selecting previously unselected package libslf4j-java. Preparing to unpack .../086-libslf4j-java_1.7.32-2_all.deb ... Unpacking libslf4j-java (1.7.32-2) ... Selecting previously unselected package libjaxen-java. Preparing to unpack .../087-libjaxen-java_1.2.0-1_all.deb ... Unpacking libjaxen-java (1.2.0-1) ... Selecting previously unselected package libxml-commons-external-java. Preparing to unpack .../088-libxml-commons-external-java_1.4.01-6_all.deb ... Unpacking libxml-commons-external-java (1.4.01-6) ... Selecting previously unselected package libxml-commons-resolver1.1-java. Preparing to unpack .../089-libxml-commons-resolver1.1-java_1.2-11_all.deb ... Unpacking libxml-commons-resolver1.1-java (1.2-11) ... Selecting previously unselected package libxerces2-java. Preparing to unpack .../090-libxerces2-java_2.12.2-1_all.deb ... Unpacking libxerces2-java (2.12.2-1) ... Selecting previously unselected package libxom-java. Preparing to unpack .../091-libxom-java_1.3.9-1_all.deb ... Unpacking libxom-java (1.3.9-1) ... Selecting previously unselected package libjson-java. Preparing to unpack .../092-libjson-java_3.2.0+dfsg-2_all.deb ... Unpacking libjson-java (3.2.0+dfsg-2) ... Selecting previously unselected package libmbedcrypto16:amd64. Preparing to unpack .../093-libmbedcrypto16_3.6.4-2_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.4-2) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../094-libmbedx509-7_3.6.4-2_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.4-2) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../095-libmbedtls21_3.6.4-2_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.4-2) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../096-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../097-libncbi-vdb3_3.2.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-ngs3:amd64. Preparing to unpack .../098-libncbi-ngs3_3.2.1+dfsg-5_amd64.deb ... Unpacking libncbi-ngs3:amd64 (3.2.1+dfsg-5) ... Selecting previously unselected package libngs-jni:amd64. Preparing to unpack .../099-libngs-jni_3.2.1+dfsg-5_amd64.deb ... Unpacking libngs-jni:amd64 (3.2.1+dfsg-5) ... Selecting previously unselected package libngs-java:amd64. Preparing to unpack .../100-libngs-java_3.2.1+dfsg-5_amd64.deb ... Unpacking libngs-java:amd64 (3.2.1+dfsg-5) ... Selecting previously unselected package librhino-java. Preparing to unpack .../101-librhino-java_1.7.15-1_all.deb ... Unpacking librhino-java (1.7.15-1) ... Selecting previously unselected package libsnappy1v5:amd64. Preparing to unpack .../102-libsnappy1v5_1.2.2-2_amd64.deb ... Unpacking libsnappy1v5:amd64 (1.2.2-2) ... Selecting previously unselected package libsnappy-jni. Preparing to unpack .../103-libsnappy-jni_1.1.10.8-1_amd64.deb ... Unpacking libsnappy-jni (1.1.10.8-1) ... Selecting previously unselected package libsnappy-java. Preparing to unpack .../104-libsnappy-java_1.1.10.8-1_all.deb ... Unpacking libsnappy-java (1.1.10.8-1) ... Selecting previously unselected package libhtsjdk-java. Preparing to unpack .../105-libhtsjdk-java_4.1.3+dfsg-2_all.deb ... Unpacking libhtsjdk-java (4.1.3+dfsg-2) ... Selecting previously unselected package x11-common. Preparing to unpack .../106-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../107-libice6_2%3a1.1.1-1_amd64.deb ... Unpacking libice6:amd64 (2:1.1.1-1) ... Selecting previously unselected package libicu76:amd64. Preparing to unpack .../108-libicu76_76.1-4_amd64.deb ... Unpacking libicu76:amd64 (76.1-4) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../109-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../110-liblapack3_3.12.1-7_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-7) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../111-liblerc4_4.0.0+ds-5_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-5) ... Selecting previously unselected package libthai-data. Preparing to unpack .../112-libthai-data_0.1.29-2_all.deb ... Unpacking libthai-data (0.1.29-2) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../113-libthai0_0.1.29-2+b1_amd64.deb ... Unpacking libthai0:amd64 (0.1.29-2+b1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../114-libpango-1.0-0_1.56.3-2_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.56.3-2) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../115-libpangoft2-1.0-0_1.56.3-2_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.56.3-2) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../116-libpangocairo-1.0-0_1.56.3-2_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.56.3-2) ... Selecting previously unselected package libpaper2:amd64. Preparing to unpack .../117-libpaper2_2.2.5-0.3+b2_amd64.deb ... Unpacking libpaper2:amd64 (2.2.5-0.3+b2) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../118-libpaper-utils_2.2.5-0.3+b2_amd64.deb ... Unpacking libpaper-utils (2.2.5-0.3+b2) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../119-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../120-libsharpyuv0_1.5.0-0.1_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../121-libsm6_2%3a1.2.6-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.6-1) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../122-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../123-libwebp7_1.5.0-0.1_amd64.deb ... Unpacking libwebp7:amd64 (1.5.0-0.1) ... Selecting previously unselected package libtiff6:amd64. Preparing to unpack .../124-libtiff6_4.7.1-1_amd64.deb ... Unpacking libtiff6:amd64 (4.7.1-1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../125-libtirpc-common_1.3.6+ds-1_all.deb ... Unpacking libtirpc-common (1.3.6+ds-1) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../126-libtirpc3t64_1.3.6+ds-1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.6+ds-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../127-libxft2_2.3.6-1+b4_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b4) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../128-libxss1_1%3a1.2.3-1+b3_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b3) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../129-libtk8.6_8.6.17-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.17-1) ... Selecting previously unselected package libxt6t64:amd64. Preparing to unpack .../130-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... Selecting previously unselected package zip. Preparing to unpack .../131-zip_3.0-15_amd64.deb ... Unpacking zip (3.0-15) ... Selecting previously unselected package unzip. Preparing to unpack .../132-unzip_6.0-29_amd64.deb ... Unpacking unzip (6.0-29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../133-xdg-utils_1.2.1-2_all.deb ... Unpacking xdg-utils (1.2.1-2) ... Selecting previously unselected package r-base-core. Preparing to unpack .../134-r-base-core_4.5.2-1_amd64.deb ... Unpacking r-base-core (4.5.2-1) ... Selecting previously unselected package r-cran-getopt. Preparing to unpack .../135-r-cran-getopt_1.20.4-1_all.deb ... Unpacking r-cran-getopt (1.20.4-1) ... Selecting previously unselected package r-cran-mass. Preparing to unpack .../136-r-cran-mass_7.3-65-1_amd64.deb ... Unpacking r-cran-mass (7.3-65-1) ... Selecting previously unselected package r-cran-optparse. Preparing to unpack .../137-r-cran-optparse_1.7.5-1_all.deb ... Unpacking r-cran-optparse (1.7.5-1) ... Selecting previously unselected package r-cran-randomforest. Preparing to unpack .../138-r-cran-randomforest_4.7-1.2-1_amd64.deb ... Unpacking r-cran-randomforest (4.7-1.2-1) ... Selecting previously unselected package surankco. Preparing to unpack .../139-surankco_0.0.r5+dfsg-4_all.deb ... Unpacking surankco (0.0.r5+dfsg-4) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up libgraphite2-3:amd64 (1.3.14-11) ... Setting up liblcms2-2:amd64 (2.17-1) ... Setting up libpixman-1-0:amd64 (0.46.4-1) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... Setting up libslf4j-java (1.7.32-2) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up java-common (0.76) ... Setting up libdatrie1:amd64 (0.2.13-4) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libtirpc-common (1.3.6+ds-1) ... Setting up unzip (6.0-29) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up libgomp1:amd64 (15.2.0-7) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libsnappy1v5:amd64 (1.2.2-2) ... Setting up libkrb5support0:amd64 (1.22.1-2) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up libcommons-collections3-java (3.2.2-3) ... Setting up zip (3.0-15) ... Setting up librhino-java (1.7.15-1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libjaxen-java (1.2.0-1) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libnspr4:amd64 (2:4.38.2-1) ... Setting up libapache-pom-java (33-2) ... Setting up libfribidi0:amd64 (1.0.16-3) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libatomic1:amd64 (15.2.0-7) ... Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libpcsclite1:amd64 (2.4.0-2) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libk5crypto3:amd64 (1.22.1-2) ... Setting up libhamcrest-java (2.2-2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up libgfortran5:amd64 (15.2.0-7) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up sensible-utils (0.0.26) ... Setting up libtiff6:amd64 (4.7.1-1) ... Setting up libxml-commons-external-java (1.4.01-6) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up libthai-data (0.1.29-2) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up libkrb5-3:amd64 (1.22.1-2) ... Setting up libicu76:amd64 (76.1-4) ... Setting up libmbedcrypto16:amd64 (3.6.4-2) ... Setting up libpaper2:amd64 (2.2.5-0.3+b2) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libxerces2-java (2.12.2-1) ... Setting up openssl (3.5.4-1) ... Setting up libsnappy-jni (1.1.10.8-1) ... Setting up libezmorph-java (1.0.6-4) ... Setting up readline-common (8.3-3) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.3.0-2) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libnss3:amd64 (2:3.117-1) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up libxom-java (1.3.9-1) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.86.1-2) ... No schema files found: doing nothing. Setting up libmbedx509-7:amd64 (3.6.4-2) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.9-2) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ... Setting up libcommons-collections4-java (4.4-2) ... Setting up ucf (3.0052) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up libcommons-lang3-java (3.17.0-2) ... Setting up libmbedtls21:amd64 (3.6.4-2) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up libcommons-beanutils-java (1.10.1-1.1) ... Setting up libharfbuzz0b:amd64 (12.1.0-1) ... Setting up libsnappy-java (1.1.10.8-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libcommons-codec-java (1.18.0-1) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libgnutls30t64:amd64 (3.8.10-3) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up openjdk-21-jre-headless:amd64 (21.0.9+10-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ... Setting up libcommons-io-java (2.19.0-1) ... Setting up libtk8.6:amd64 (8.6.17-1) ... Setting up libpango-1.0-0:amd64 (1.56.3-2) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... Setting up libpangoft2-1.0-0:amd64 (1.56.3-2) ... Setting up libpangocairo-1.0-0:amd64 (1.56.3-2) ... Setting up libncbi-ngs3:amd64 (3.2.1+dfsg-5) ... Setting up libngs-jni:amd64 (3.2.1+dfsg-5) ... Setting up libcommons-compress-java (1.27.1-2) ... Setting up libcurl4t64:amd64 (8.17.0-2) ... Setting up r-base-core (4.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up libngs-java:amd64 (3.2.1+dfsg-5) ... Setting up r-cran-mass (7.3-65-1) ... Setting up r-cran-randomforest (4.7-1.2-1) ... Setting up r-cran-getopt (1.20.4-1) ... Setting up r-cran-optparse (1.7.5-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_BR_Root_CA_2_2023.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_2_2023.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up junit4 (4.13.2-5) ... Setting up default-jre-headless (2:1.21-76) ... Setting up libjson-java (3.2.0+dfsg-2) ... Setting up libhtsjdk-java (4.1.3+dfsg-2) ... Setting up surankco (0.0.r5+dfsg-4) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', '-y', 'install', 'surankco'] 0m28.8s INFO: Running scripts post_install 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_install_exceptions'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_install_exceptions'] 0m28.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 0m29.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 0m29.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpcp2bic83 to sid 0m29.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m29.4s INFO: Running scripts pre_distupgrade 0m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_distupgrade_exceptions'] 0m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_distupgrade_exceptions'] 0m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', 'update'] 0m39.8s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [176 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7450 kB] Fetched 17.9 MB in 9s (2058 kB/s) Reading package lists... 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', 'update'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', '-yf', 'dist-upgrade'] 0m48.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: gcc-15-base libatomic1 libgcc-s1 libgfortran5 libglib2.0-0t64 libgomp1 libncursesw6 libp11-kit0 libstdc++6 libtinfo6 ncurses-base ncurses-bin perl-base surankco 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6833 kB of archives. After this operation, 29.7 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.5+20251115-2 [444 kB] Get:2 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.40.1-7 [1679 kB] Get:3 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.5+20251115-2 [276 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 15.2.0-8 [9532 B] Get:5 http://deb.debian.org/debian sid/main amd64 gcc-15-base amd64 15.2.0-8 [53.5 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 15.2.0-8 [736 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 15.2.0-8 [140 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 15.2.0-8 [862 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 15.2.0-8 [71.5 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20251115-2 [136 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.5+20251115-2 [353 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.86.2-1 [1547 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.10-1 [444 kB] Get:14 http://deb.debian.org/debian sid/main amd64 surankco all 0.0.r5+dfsg-5 [79.5 kB] Fetched 6833 kB in 6s (1103 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9846 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.5+20251115-2_amd64.deb ... Unpacking ncurses-bin (6.5+20251115-2) over (6.5+20250216-2) ... Setting up ncurses-bin (6.5+20251115-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9846 files and directories currently installed.) Preparing to unpack .../perl-base_5.40.1-7_amd64.deb ... Unpacking perl-base (5.40.1-7) over (5.40.1-6) ... Setting up perl-base (5.40.1-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9846 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.5+20251115-2_all.deb ... Unpacking ncurses-base (6.5+20251115-2) over (6.5+20250216-2) ... Setting up ncurses-base (6.5+20251115-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9846 files and directories currently installed.) Preparing to unpack .../libatomic1_15.2.0-8_amd64.deb ... Unpacking libatomic1:amd64 (15.2.0-8) over (15.2.0-7) ... Preparing to unpack .../gcc-15-base_15.2.0-8_amd64.deb ... Unpacking gcc-15-base:amd64 (15.2.0-8) over (15.2.0-7) ... Setting up gcc-15-base:amd64 (15.2.0-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9846 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-8_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-8) over (15.2.0-7) ... Setting up libstdc++6:amd64 (15.2.0-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9846 files and directories currently installed.) Preparing to unpack .../libgomp1_15.2.0-8_amd64.deb ... Unpacking libgomp1:amd64 (15.2.0-8) over (15.2.0-7) ... Preparing to unpack .../libgfortran5_15.2.0-8_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-8) over (15.2.0-7) ... Preparing to unpack .../libgcc-s1_15.2.0-8_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-8) over (15.2.0-7) ... Setting up libgcc-s1:amd64 (15.2.0-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9846 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.5+20251115-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20251115-2) over (6.5+20250216-2) ... Preparing to unpack .../libtinfo6_6.5+20251115-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.5+20251115-2) over (6.5+20250216-2) ... Setting up libtinfo6:amd64 (6.5+20251115-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9846 files and directories currently installed.) Preparing to unpack .../libglib2.0-0t64_2.86.2-1_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.86.2-1) over (2.86.1-2) ... Preparing to unpack .../libp11-kit0_0.25.10-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.10-1) over (0.25.9-2) ... Preparing to unpack .../surankco_0.0.r5+dfsg-5_all.deb ... Unpacking surankco (0.0.r5+dfsg-5) over (0.0.r5+dfsg-4) ... Setting up surankco (0.0.r5+dfsg-5) ... Setting up libgomp1:amd64 (15.2.0-8) ... Setting up libp11-kit0:amd64 (0.25.10-1) ... Setting up libatomic1:amd64 (15.2.0-8) ... Setting up libncursesw6:amd64 (6.5+20251115-2) ... Setting up libgfortran5:amd64 (15.2.0-8) ... Setting up libglib2.0-0t64:amd64 (2.86.2-1) ... No schema files found: doing nothing. Processing triggers for libc-bin (2.41-12) ... 0m48.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', '-yf', 'dist-upgrade'] 0m48.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m49.9s DUMP: 0c36c1529bf3aacfa2cc08f1e1622050 - 0m49.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m49.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'show', '--no-all-versions', 'surankco'] 0m50.3s DUMP: Package: surankco Version: 0.0.r5+dfsg-5 Installed-Size: 159 Maintainer: Debian Med Packaging Team Architecture: all Depends: libhtsjdk-java, r-base-core, r-cran-mass, r-cran-optparse, r-cran-randomforest Description-en: Supervised Ranking of Contigs in de novo Assemblies SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet. Description-md5: 713e9eb3de12c80c60bcafd63bb396f3 Homepage: https://sourceforge.net/projects/surankco/ Section: science Priority: optional Filename: pool/main/s/surankco/surankco_0.0.r5+dfsg-5_all.deb Size: 79532 MD5sum: 05d41bee3721a07365b1becec3761d77 SHA256: c45da5ec0e5d3874aa64faba853ff64f3db1f0717bd0b82679816ee0a710df9d 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'show', '--no-all-versions', 'surankco'] 0m50.3s INFO: apt-cache knows about the following packages: surankco 0m50.3s INFO: Running scripts pre_install 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_database-server'] 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_database-server'] 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_exceptions'] 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_exceptions'] 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_extras'] 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_extras'] 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_foreign_architecture'] 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_foreign_architecture'] 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'policy'] 0m50.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'policy'] 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'policy', 'surankco'] 0m50.5s DUMP: surankco: Installed: 0.0.r5+dfsg-5 Candidate: 0.0.r5+dfsg-5 Version table: *** 0.0.r5+dfsg-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'policy', 'surankco'] 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', '-y', 'install', 'surankco'] 0m51.4s DUMP: Reading package lists... Building dependency tree... Reading state information... surankco is already the newest version (0.0.r5+dfsg-5). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', '-y', 'install', 'surankco'] 0m51.4s INFO: Running scripts post_install 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_install_exceptions'] 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_install_exceptions'] 0m51.4s INFO: Running scripts post_distupgrade 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_distupgrade_exceptions'] 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_distupgrade_exceptions'] 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_distupgrade_zz_backports'] 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_distupgrade_zz_backports'] 0m51.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 0m51.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 0m51.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 0m52.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 0m52.5s INFO: Running scripts pre_install 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_database-server'] 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_database-server'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_exceptions'] 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_exceptions'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_extras'] 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_extras'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_foreign_architecture'] 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_foreign_architecture'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m52.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m52.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'policy'] 0m52.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m52.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'policy'] 0m52.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'policy', 'surankco'] 0m52.7s DUMP: surankco: Installed: 0.0.r5+dfsg-5 Candidate: 0.0.r5+dfsg-5 Version table: *** 0.0.r5+dfsg-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m52.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-cache', 'policy', 'surankco'] 0m52.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', '-y', 'install', 'surankco=0.0.r5+dfsg-5'] 0m53.1s DUMP: Reading package lists... Building dependency tree... Reading state information... surankco is already the newest version (0.0.r5+dfsg-5). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m53.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', '-y', 'install', 'surankco=0.0.r5+dfsg-5'] 0m53.1s INFO: Running scripts post_install 0m53.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_install_exceptions'] 0m53.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_install_exceptions'] 0m53.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 0m53.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 0m54.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', '-ac', '--ignore-obsolete'] 1m1.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', '-ac', '--ignore-obsolete'] 1m1.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m1.5s DUMP: 0.15.9~deb12u1 1m1.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m1.5s INFO: Running adequate version 0.15.9~deb12u1 now. 1m1.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'surankco'] 1m1.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'surankco'] 1m1.7s INFO: Running scripts pre_remove 1m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_remove_exceptions'] 1m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/pre_remove_exceptions'] 1m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m4.1s DUMP: install ok installed apt apt 3.1.12 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.2-4 install ok installed ca-certificates ca-certificates 20250419 install ok installed ca-certificates-java ca-certificates-java 20240118 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed default-jre-headless default-jre-headless 2:1.21-76 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig fontconfig 2.15.0-2.4 install ok installed fontconfig-config fontconfig-config 2.15.0-2.4 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-10 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-8 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed java-common java-common 0.76 install ok installed junit4 junit4 4.13.2-5 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapache-pom-java libapache-pom-java 33-2 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.12 install ok installed libatomic1:amd64 libatomic1 15.2.0-8 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblas3:amd64 libblas3 3.12.1-7 install ok installed libblkid1:amd64 libblkid1 2.41.2-4 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcairo2:amd64 libcairo2 1.18.4-1+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-3+b3 install ok installed libcommons-beanutils-java libcommons-beanutils-java 1.10.1-1.1 install ok installed libcommons-codec-java libcommons-codec-java 1.18.0-1 install ok installed libcommons-collections3-java libcommons-collections3-java 3.2.2-3 install ok installed libcommons-collections4-java libcommons-collections4-java 4.4-2 install ok installed libcommons-compress-java libcommons-compress-java 1.27.1-2 install ok installed libcommons-io-java libcommons-io-java 2.19.0-1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-6 install ok installed libcommons-lang3-java libcommons-lang3-java 3.17.0-2 install ok installed libcommons-logging-java libcommons-logging-java 1.3.0-2 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.17.0-2 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.281 install ok installed libdeflate0:amd64 libdeflate0 1.23-2 install ok installed libexpat1:amd64 libexpat1 2.7.3-1 install ok installed libezmorph-java libezmorph-java 1.0.6-4 install ok installed libffi8:amd64 libffi8 3.5.2-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.4 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-3 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-8 install ok installed libgfortran5:amd64 libgfortran5 15.2.0-8 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.86.2-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.10-3 install ok installed libgomp1:amd64 libgomp1 15.2.0-8 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-11 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-2 install ok installed libhamcrest-java libhamcrest-java 2.2-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 12.1.0-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed libhtsjdk-java libhtsjdk-java 4.1.3+dfsg-2 install ok installed libice6:amd64 libice6 2:1.1.1-1 install ok installed libicu76:amd64 libicu76 76.1-4 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-4 install ok installed libjaxen-java libjaxen-java 1.2.0-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-4 install ok installed libjson-java libjson-java 3.2.0+dfsg-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-2 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-2 install ok installed liblapack3:amd64 liblapack3 3.12.1-7 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.2-4 install ok installed liblcms2-2:amd64 liblcms2-2 2.17-1 install ok installed libldap2:amd64 libldap2 2.6.10+dfsg-1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-6 install ok installed liblzma5:amd64 liblzma5 5.8.1-2 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.4-2 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.4-2 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.4-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.2-4 install ok installed libncbi-ngs3:amd64 libncbi-ngs3 3.2.1+dfsg-5 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.2.1+dfsg-2 install ok installed libncursesw6:amd64 libncursesw6 6.5+20251115-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1.1+b1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.12.0-1 install ok installed libngs-java:amd64 libngs-java 3.2.1+dfsg-5 install ok installed libngs-jni:amd64 libngs-jni 3.2.1+dfsg-5 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.16.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.16.0-1 install ok installed libnspr4:amd64 libnspr4 2:4.38.2-1 install ok installed libnss3:amd64 libnss3 2:3.117-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.10-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.56.3-2 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.56.3-2 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.56.3-2 install ok installed libpaper-utils libpaper-utils 2.2.5-0.3+b2 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.3+b2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libpcsclite1:amd64 libpcsclite1 2.4.0-2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.50-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-3 install ok installed librhino-java librhino-java 1.7.15-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-10 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.9-2 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libslf4j-java libslf4j-java 1.7.32-2 install ok installed libsm6:amd64 libsm6 2:1.2.6-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.2-4 install ok installed libsnappy-java libsnappy-java 1.1.10.8-1 install ok installed libsnappy-jni libsnappy-jni 1.1.10.8-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.2-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.5.4-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-8 install ok installed libsystemd0:amd64 libsystemd0 259~rc1-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.17+dfsg-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2+b1 install ok installed libtiff6:amd64 libtiff6 4.7.1-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20251115-2 install ok installed libtirpc-common libtirpc-common 1.3.6+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.6+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.17-1 install ok installed libudev1:amd64 libudev1 259~rc1-1 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed libuuid1:amd64 libuuid1 2.41.2-4 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxerces2-java libxerces2-java 2.12.2-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxft2:amd64 libxft2 2.3.6-1+b4 install ok installed libxml-commons-external-java libxml-commons-external-java 1.4.01-6 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-11 install ok installed libxom-java libxom-java 1.3.9-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b3 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-2 install ok installed login login 1:4.16.0-2+really2.41.2-4 install ok installed login.defs login.defs 1:4.18.0-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.2-4 install ok installed ncbi-vdb-data ncbi-vdb-data 3.2.1+dfsg-2 install ok installed ncurses-base ncurses-base 6.5+20251115-2 install ok installed ncurses-bin ncurses-bin 6.5+20251115-2 install ok installed openjdk-21-jre-headless:amd64 openjdk-21-jre-headless 21.0.9+10-1 install ok installed openssl openssl 3.5.4-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.4-1 install ok installed passwd passwd 1:4.18.0-2 install ok installed perl-base perl-base 5.40.1-7 install ok installed procps procps 2:4.0.4-9 install ok installed r-base-core r-base-core 4.5.2-1 install ok installed r-cran-getopt r-cran-getopt 1.20.4-1 install ok installed r-cran-mass r-cran-mass 7.3-65-1 install ok installed r-cran-optparse r-cran-optparse 1.7.5-1 install ok installed r-cran-randomforest r-cran-randomforest 4.7-1.2-1 install ok installed readline-common readline-common 8.3-3 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.3.0-3 install ok installed surankco surankco 0.0.r5+dfsg-5 install ok installed sysvinit-utils sysvinit-utils 3.15-6 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed ucf ucf 3.0052 install ok installed unzip unzip 6.0-29 install ok installed util-linux util-linux 2.41.2-4 install ok installed x11-common x11-common 1:7.7+26 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed zip zip 3.0-15 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 1m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'java-common', 'junit4', 'libapache-pom-java', 'libatomic1:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcommons-beanutils-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libezmorph-java', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libhamcrest-java', 'libharfbuzz0b:amd64', 'libhtsjdk-java', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libjaxen-java', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpcsclite1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libreadline8t64:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxft2:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxom-java', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'ncbi-vdb-data', 'openjdk-21-jre-headless:amd64', 'openssl', 'procps', 'r-base-core', 'r-cran-getopt', 'r-cran-mass', 'r-cran-optparse', 'r-cran-randomforest', 'readline-common', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'surankco'] 1m6.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ca-certificates ca-certificates-java default-jre-headless fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono java-common junit4 libapache-pom-java libatomic1 libblas3 libbrotli1 libcairo2 libcom-err2 libcommons-beanutils-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcurl4t64 libdatrie1 libdeflate0 libexpat1 libezmorph-java libffi8 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libhamcrest-java libharfbuzz0b libhtsjdk-java libice6 libicu76 libidn2-0 libjaxen-java libjbig0 libjpeg62-turbo libjson-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-ngs3 libncbi-vdb3 libncursesw6 libnghttp2-14 libnghttp3-9 libngs-java libngs-jni libngtcp2-16 libngtcp2-crypto-ossl0 libnspr4 libnss3 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcsclite1 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libreadline8t64 librhino-java librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libslf4j-java libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libssh2-1t64 libtasn1-6 libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libunistring5 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxerces2-java libxext6 libxft2 libxml-commons-external-java libxml-commons-resolver1.1-java libxom-java libxrender1 libxss1 libxt6t64 ncbi-vdb-data openjdk-21-jre-headless openssl procps r-base-core r-cran-getopt r-cran-mass r-cran-optparse r-cran-randomforest readline-common sensible-utils surankco ucf unzip x11-common xdg-utils zip 0 upgraded, 0 newly installed, 140 to remove and 0 not upgraded. After this operation, 386 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9846 files and directories currently installed.) Removing surankco (0.0.r5+dfsg-5) ... Removing libhtsjdk-java (4.1.3+dfsg-2) ... Removing libjson-java (3.2.0+dfsg-2) ... Removing junit4 (4.13.2-5) ... Removing default-jre-headless (2:1.21-76) ... Removing openjdk-21-jre-headless:amd64 (21.0.9+10-1) ... Removing ca-certificates-java (20240118) ... Removing r-cran-randomforest (4.7-1.2-1) ... Removing java-common (0.76) ... Removing libcommons-jexl2-java (2.1.1-6) ... Removing libcommons-beanutils-java (1.10.1-1.1) ... Removing libcommons-logging-java (1.3.0-2) ... Removing libcommons-lang3-java (3.17.0-2) ... Removing libcommons-compress-java (1.27.1-2) ... Removing libcommons-codec-java (1.18.0-1) ... Removing libcommons-collections3-java (3.2.2-3) ... Removing libcommons-collections4-java (4.4-2) ... Removing libcommons-io-java (2.19.0-1) ... Removing libezmorph-java (1.0.6-4) ... Removing libhamcrest-java (2.2-2) ... Removing libxom-java (1.3.9-1) ... Removing libjaxen-java (1.2.0-1) ... Removing liblcms2-2:amd64 (2.17-1) ... Removing libngs-java:amd64 (3.2.1+dfsg-5) ... Removing libngs-jni:amd64 (3.2.1+dfsg-5) ... Removing libncbi-ngs3:amd64 (3.2.1+dfsg-5) ... Removing libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Removing libmbedtls21:amd64 (3.6.4-2) ... Removing libmbedx509-7:amd64 (3.6.4-2) ... Removing libmbedcrypto16:amd64 (3.6.4-2) ... Removing libnss3:amd64 (2:3.117-1) ... Removing libnspr4:amd64 (2:4.38.2-1) ... Removing libpcsclite1:amd64 (2.4.0-2) ... Removing librhino-java (1.7.15-1) ... Removing libslf4j-java (1.7.32-2) ... Removing libsnappy-java (1.1.10.8-1) ... Removing libsnappy-jni (1.1.10.8-1) ... Removing libsnappy1v5:amd64 (1.2.2-2) ... Removing libxerces2-java (2.12.2-1) ... Removing libxml-commons-external-java (1.4.01-6) ... Removing libxml-commons-resolver1.1-java (1.2-11) ... Removing ncbi-vdb-data (3.2.1+dfsg-2) ... rm: cannot remove '/usr/lib/python3/dist-packages/__pycache__/vdb.*': No such file or directory Removing r-cran-optparse (1.7.5-1) ... Removing r-cran-getopt (1.20.4-1) ... Removing r-cran-mass (7.3-65-1) ... Removing r-base-core (4.5.2-1) ... Removing ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.56.3-2) ... Removing libpangoft2-1.0-0:amd64 (1.56.3-2) ... Removing libpango-1.0-0:amd64 (1.56.3-2) ... Removing fontconfig (2.15.0-2.4) ... Removing libtk8.6:amd64 (8.6.17-1) ... Removing libxft2:amd64 (2.3.6-1+b4) ... Removing libcairo2:amd64 (1.18.4-1+b1) ... Removing libfontconfig1:amd64 (2.15.0-2.4) ... Removing fontconfig-config (2.15.0-2.4) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (33-2) ... Removing libharfbuzz0b:amd64 (12.1.0-1) ... Removing libglib2.0-0t64:amd64 (2.86.2-1) ... Removing libatomic1:amd64 (15.2.0-8) ... Removing liblapack3:amd64 (3.12.1-7) ... Removing libblas3:amd64 (3.12.1-7) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libcurl4t64:amd64 (8.17.0-2) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing libtirpc3t64:amd64 (1.3.6+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.22.1-2) ... Removing libkrb5-3:amd64 (1.22.1-2) ... Removing libcom-err2:amd64 (1.47.2-3+b3) ... Removing libthai0:amd64 (0.1.29-2+b1) ... Removing libdatrie1:amd64 (0.2.13-4) ... Removing libtiff6:amd64 (4.7.1-1) ... Removing libdeflate0:amd64 (1.23-2) ... Removing libexpat1:amd64 (2.7.3-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Removing libgnutls30t64:amd64 (3.8.10-3) ... Removing libp11-kit0:amd64 (0.25.10-1) ... Removing libffi8:amd64 (3.5.2-2) ... Removing libfribidi0:amd64 (1.0.16-3) ... Removing libgfortran5:amd64 (15.2.0-8) ... Removing libgomp1:amd64 (15.2.0-8) ... Removing libgraphite2-3:amd64 (1.3.14-11) ... Removing libxt6t64:amd64 (1:1.2.1-1.3) ... Removing libsm6:amd64 (2:1.2.6-1) ... Removing libice6:amd64 (2:1.1.1-1) ... Removing libicu76:amd64 (76.1-4) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.8-4) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-4) ... Removing libk5crypto3:amd64 (1.22.1-2) ... Removing libkeyutils1:amd64 (1.6.3-6) ... Removing libkrb5support0:amd64 (1.22.1-2) ... Removing libldap2:amd64 (2.6.10+dfsg-1) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing ucf (3.0052) ... Removing procps (2:4.0.4-9) ... Removing libncursesw6:amd64 (6.5+20251115-2) ... Removing libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Removing libnghttp3-9:amd64 (1.12.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Removing libngtcp2-16:amd64 (1.16.0-1) ... Removing libpaper-utils (2.2.5-0.3+b2) ... Removing libpaper2:amd64 (2.2.5-0.3+b2) ... Removing libpixman-1-0:amd64 (0.46.4-1) ... Removing libpng16-16t64:amd64 (1.6.50-1) ... Removing libproc2-0:amd64 (2:4.0.4-9) ... Removing libreadline8t64:amd64 (8.3-3) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Removing libwebp7:amd64 (1.5.0-0.1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libtcl8.6:amd64 (8.6.17+dfsg-1) ... Removing libtext-wrapi18n-perl (0.06-10) ... Removing libtext-charwidth-perl:amd64 (0.04-11+b4) ... Removing libthai-data (0.1.29-2) ... Removing libtirpc-common (1.3.6+ds-1) ... Removing libunistring5:amd64 (1.3-2) ... Removing libxss1:amd64 (1:1.2.3-1+b3) ... Removing libxrender1:amd64 (1:0.9.12-1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing openssl (3.5.4-1) ... Removing readline-common (8.3-3) ... Removing sensible-utils (0.0.26) ... Removing unzip (6.0-29) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-15) ... Removing libx11-6:amd64 (2:1.8.12-1) ... Removing libx11-data (2:1.8.12-1) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Processing triggers for libc-bin (2.41-12) ... 1m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'java-common', 'junit4', 'libapache-pom-java', 'libatomic1:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcommons-beanutils-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libezmorph-java', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libhamcrest-java', 'libharfbuzz0b:amd64', 'libhtsjdk-java', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libjaxen-java', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpcsclite1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libreadline8t64:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxft2:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxom-java', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'ncbi-vdb-data', 'openjdk-21-jre-headless:amd64', 'openssl', 'procps', 'r-base-core', 'r-cran-getopt', 'r-cran-mass', 'r-cran-optparse', 'r-cran-randomforest', 'readline-common', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'surankco'] 1m6.0s INFO: Running scripts post_remove 1m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_remove_exceptions'] 1m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_remove_exceptions'] 1m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg', '--purge', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'java-common', 'junit4', 'libapache-pom-java', 'libatomic1:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcommons-beanutils-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libezmorph-java', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libhamcrest-java', 'libharfbuzz0b:amd64', 'libhtsjdk-java', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libjaxen-java', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpcsclite1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libreadline8t64:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxft2:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxom-java', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'ncbi-vdb-data', 'openjdk-21-jre-headless:amd64', 'openssl', 'procps', 'r-base-core', 'r-cran-getopt', 'r-cran-mass', 'r-cran-optparse', 'r-cran-randomforest', 'readline-common', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m6.7s DUMP: (Reading database ... 4999 files and directories currently installed.) Purging configuration files for ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20240118) ... dpkg: warning: ignoring request to remove default-jre-headless which isn't installed Purging configuration files for fontconfig (2.15.0-2.4) ... Purging configuration files for fontconfig-config (2.15.0-2.4) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for java-common (0.76) ... dpkg: warning: ignoring request to remove junit4 which isn't installed dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcom-err2 which isn't installed dpkg: warning: ignoring request to remove libcommons-beanutils-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-collections3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-collections4-java which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-jexl2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-logging-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libezmorph-java which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.86.2-1) ... dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-2) ... dpkg: warning: ignoring request to remove libhamcrest-java which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhtsjdk-java which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu76 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libjaxen-java which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjson-java which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed dpkg: warning: ignoring request to remove libncbi-ngs3 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libngs-java which isn't installed dpkg: warning: ignoring request to remove libngs-jni which isn't installed dpkg: warning: ignoring request to remove libngtcp2-16 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper2:amd64 (2.2.5-0.3+b2) ... dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.3-3) ... dpkg: warning: ignoring request to remove librhino-java which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libslf4j-java which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsnappy-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-jni which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtext-charwidth-perl which isn't installed dpkg: warning: ignoring request to remove libtext-wrapi18n-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.6+ds-1) ... Purging configuration files for libtirpc3t64:amd64 (1.3.6+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxerces2-java which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml-commons-external-java which isn't installed Purging configuration files for libxml-commons-resolver1.1-java (1.2-11) ... dpkg: warning: ignoring request to remove libxom-java which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6t64 which isn't installed Purging configuration files for ncbi-vdb-data (3.2.1+dfsg-2) ... Purging configuration files for openjdk-21-jre-headless:amd64 (21.0.9+10-1) ... Purging configuration files for openssl (3.5.4-1) ... Purging configuration files for procps (2:4.0.4-9) ... Purging configuration files for r-base-core (4.5.2-1) ... dpkg: warning: ignoring request to remove r-cran-getopt which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-optparse which isn't installed dpkg: warning: ignoring request to remove r-cran-randomforest which isn't installed Purging configuration files for readline-common (8.3-3) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for ucf (3.0052) ... dpkg: warning: ignoring request to remove unzip which isn't installed Purging configuration files for x11-common (1:7.7+26) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 1m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg', '--purge', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'java-common', 'junit4', 'libapache-pom-java', 'libatomic1:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcommons-beanutils-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libezmorph-java', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libhamcrest-java', 'libharfbuzz0b:amd64', 'libhtsjdk-java', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libjaxen-java', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpcsclite1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libreadline8t64:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxft2:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxom-java', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'ncbi-vdb-data', 'openjdk-21-jre-headless:amd64', 'openssl', 'procps', 'r-base-core', 'r-cran-getopt', 'r-cran-mass', 'r-cran-optparse', 'r-cran-randomforest', 'readline-common', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg', '--purge', 'surankco'] 1m6.7s DUMP: dpkg: warning: ignoring request to remove surankco which isn't installed 1m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg', '--purge', 'surankco'] 1m6.7s INFO: Running scripts post_purge 1m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_purge_exceptions'] 1m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_purge_exceptions'] 1m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg', '--purge', '--pending'] 1m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg', '--purge', '--pending'] 1m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg', '--remove', '--pending'] 1m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg', '--remove', '--pending'] 1m6.8s INFO: Running scripts post_test 1m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_test_exceptions'] 1m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'tmp/scripts/post_test_exceptions'] 1m6.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 1m7.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 1m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg-divert', '--list'] 1m7.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'dpkg-divert', '--list'] 1m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', 'clean'] 1m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcp2bic83', 'apt-get', 'clean'] 1m7.2s DEBUG: Recording chroot state 1m8.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/shm'] 1m8.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/shm'] 1m8.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/console'] 1m8.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/console'] 1m8.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/ptmx'] 1m8.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/ptmx'] 1m8.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/pts'] 1m8.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/dev/pts'] 1m8.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/proc'] 1m8.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcp2bic83/proc'] 1m8.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 1m8.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpcp2bic83'] 1m8.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpcp2bic83 1m8.6s INFO: PASS: Upgrading between Debian distributions. 1m8.6s INFO: PASS: All tests. 1m8.6s INFO: piuparts run ends. ret=0 End: 2025-11-21 03:33:29 GMT