Start: 2020-09-22 15:28:08 GMT [testing] Package: sweed Version: 3.2.1+dfsg-2 Installed-Size: 144 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29) Description: assessment of SNPs for their evolutionary advantage Homepage: https://sco.h-its.org/exelixis/web/software/sweed/ Description-md5: 8ff0c702fca9de5362a10d068b3e3bc3 Section: science Priority: optional Filename: pool/main/s/sweed/sweed_3.2.1+dfsg-2_amd64.deb Size: 63256 MD5sum: a47a43005a4c3ec9f53356b04e34d974 SHA256: 7a9361f8654c019dabb2b3133e7398904c93eec5b2ef38ce6dfc61f6ee4548a6 [sid] Package: sweed Version: 3.2.1+dfsg-5 Installed-Size: 151 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29) Description: assessment of SNPs for their evolutionary advantage Homepage: https://sco.h-its.org/exelixis/web/software/sweed/ Description-md5: 8ff0c702fca9de5362a10d068b3e3bc3 Section: science Priority: optional Filename: pool/main/s/sweed/sweed_3.2.1+dfsg-5_amd64.deb Size: 65020 MD5sum: af4eb79a59b992e830c917b20142f171 SHA256: 650266cfceb657f5468c14e0f13c1233e7ea9b0bddd8d7993ed90e04e5eb0efb Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt sweed=3.2.1+dfsg-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.2~202004292038~1.1.1-19-g418151e2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt sweed=3.2.1+dfsg-5 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-10-amd64 #1 SMP Debian 4.19.132-1 (2020-07-24) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpanx83dbo 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpanx83dbo 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpanx83dbo/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', 'update'] 0m6.0s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 Packages [7678 kB] Get:3 http://deb.debian.org/debian bullseye/main Translation-en [5895 kB] Fetched 13.7 MB in 3s (4107 kB/s) Reading package lists... 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', 'update'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-10-base libgcc-s1 libgnutls30 libstdc++6 sysvinit-utils 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1947 kB of archives. After this operation, 30.7 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 sysvinit-utils amd64 2.96-5 [25.0 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 gcc-10-base amd64 10.2.0-9 [199 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libstdc++6 amd64 10.2.0-9 [492 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libgcc-s1 amd64 10.2.0-9 [41.3 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 libgnutls30 amd64 3.6.15-4 [1189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1947 kB in 0s (8002 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6524 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-5_amd64.deb ... Unpacking sysvinit-utils (2.96-5) over (2.96-4) ... Setting up sysvinit-utils (2.96-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6524 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10.2.0-9_amd64.deb ... Unpacking gcc-10-base:amd64 (10.2.0-9) over (10.2.0-7) ... Setting up gcc-10-base:amd64 (10.2.0-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6524 files and directories currently installed.) Preparing to unpack .../libstdc++6_10.2.0-9_amd64.deb ... Unpacking libstdc++6:amd64 (10.2.0-9) over (10.2.0-7) ... Setting up libstdc++6:amd64 (10.2.0-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6524 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10.2.0-9_amd64.deb ... Unpacking libgcc-s1:amd64 (10.2.0-9) over (10.2.0-7) ... Setting up libgcc-s1:amd64 (10.2.0-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6524 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.15-4_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.15-4) over (3.6.14-2+b1) ... Setting up libgnutls30:amd64 (3.6.15-4) ... Processing triggers for libc-bin (2.31-3) ... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.3s DUMP: 0cdbf4f247db16d464accb2663e0f5fb - 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.3s INFO: Running scripts post_setup 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_setup_dummy_users'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_setup_dummy_users'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_setup_forbid_home'] 0m8.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_setup_forbid_home'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_setup_minimize'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_setup_minimize'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_setup_zz_backports'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_setup_zz_backports'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.8s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.1.10 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-7 install ok installed bsdutils bsdutils 1:2.36-3 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-7 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.20.5 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.0-9 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-18 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.58 install ok installed libacl1:amd64 libacl1 2.2.53-8 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.1.10 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3+b1 install ok installed libblkid1:amd64 libblkid1 2.36-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-3 install ok installed libc6:amd64 libc6 2.31-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.253 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.6-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-6 install ok installed libgnutls30:amd64 libgnutls30 3.6.15-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libhogweed6:amd64 libhogweed6 3.6-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.36-3 install ok installed libnettle8:amd64 libnettle8 3.6-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.21-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.4.3-1+b1 install ok installed libselinux1:amd64 libselinux1 3.1-2 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36-3 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 246.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2-1 install ok installed libudev1:amd64 libudev1 246.5-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36-3 install ok installed libzstd1:amd64 libzstd1 1.4.5+dfsg-4 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36-3 install ok installed ncurses-base ncurses-base 6.2-1 install ok installed ncurses-bin ncurses-bin 6.2-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.3-4 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-5 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2020a-1 install ok installed util-linux util-linux 2.36-3 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m9.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m9.2s INFO: Running scripts is_testable 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/is_testable_uninstallable'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/is_testable_uninstallable'] 0m9.2s INFO: Running scripts pre_test 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_test_exceptions'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_test_exceptions'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_test_root_password'] 0m9.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_test_root_password'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'show', '--no-all-versions', 'sweed'] 0m9.3s DUMP: Package: sweed Version: 3.2.1+dfsg-2 Installed-Size: 144 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29) Description-en: assessment of SNPs for their evolutionary advantage Biological sequences are available in ever increasing abundance across ever larger populations for ever increasing fractions of the genome. This tool sorts the SNPs for their active or passive contribution to a genetic drift, i.e. to see particular sequences at a higher fraction over time. Description-md5: 8ff0c702fca9de5362a10d068b3e3bc3 Homepage: https://sco.h-its.org/exelixis/web/software/sweed/ Section: science Priority: optional Filename: pool/main/s/sweed/sweed_3.2.1+dfsg-2_amd64.deb Size: 63256 MD5sum: a47a43005a4c3ec9f53356b04e34d974 SHA256: 7a9361f8654c019dabb2b3133e7398904c93eec5b2ef38ce6dfc61f6ee4548a6 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'show', '--no-all-versions', 'sweed'] 0m9.4s INFO: apt-cache knows about the following packages: sweed 0m9.4s INFO: Running scripts pre_install 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'policy'] 0m9.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'policy'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'policy', 'sweed'] 0m9.5s DUMP: sweed: Installed: (none) Candidate: 3.2.1+dfsg-2 Version table: 3.2.1+dfsg-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'policy', 'sweed'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', '-y', 'install', 'sweed'] 0m10.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sweed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 63.3 kB of archives. After this operation, 147 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 sweed amd64 3.2.1+dfsg-2 [63.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 63.3 kB in 0s (926 kB/s) Selecting previously unselected package sweed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6525 files and directories currently installed.) Preparing to unpack .../sweed_3.2.1+dfsg-2_amd64.deb ... Unpacking sweed (3.2.1+dfsg-2) ... Setting up sweed (3.2.1+dfsg-2) ... 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', '-y', 'install', 'sweed'] 0m10.2s INFO: Running scripts post_install 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_install_exceptions'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_install_exceptions'] 0m10.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m10.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m10.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpanx83dbo to sid 0m10.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m10.7s INFO: Running scripts pre_distupgrade 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_distupgrade_exceptions'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_distupgrade_exceptions'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', 'update'] 0m14.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [146 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8391 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6321 kB] Fetched 14.9 MB in 3s (5066 kB/s) Reading package lists... 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', 'update'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', '-yf', 'dist-upgrade'] 0m15.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: coreutils debianutils libdebconfclient0 libseccomp2 libsystemd0 libtinfo6 libudev1 ncurses-base ncurses-bin sweed 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4694 kB of archives. After this operation, 1836 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 coreutils amd64 8.32-4 [2866 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 4.11.1 [101 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.2+20200918-1 [340 kB] Get:4 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.2+20200918-1 [427 kB] Get:5 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.2+20200918-1 [270 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 246.6-1 [370 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.254 [49.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.4.4-1 [45.2 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 246.6-1 [162 kB] Get:10 http://deb.debian.org/debian sid/main amd64 sweed amd64 3.2.1+dfsg-5 [65.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4694 kB in 0s (10.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6530 files and directories currently installed.) Preparing to unpack .../coreutils_8.32-4_amd64.deb ... Unpacking coreutils (8.32-4) over (8.30-3+b1) ... Setting up coreutils (8.32-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../debianutils_4.11.1_amd64.deb ... Unpacking debianutils (4.11.1) over (4.9.1) ... Setting up debianutils (4.11.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.2+20200918-1_amd64.deb ... Unpacking libtinfo6:amd64 (6.2+20200918-1) over (6.2-1) ... Setting up libtinfo6:amd64 (6.2+20200918-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.2+20200918-1_amd64.deb ... Unpacking ncurses-bin (6.2+20200918-1) over (6.2-1) ... Setting up ncurses-bin (6.2+20200918-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2+20200918-1_all.deb ... Unpacking ncurses-base (6.2+20200918-1) over (6.2-1) ... Setting up ncurses-base (6.2+20200918-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../libsystemd0_246.6-1_amd64.deb ... Unpacking libsystemd0:amd64 (246.6-1) over (246.5-1) ... Setting up libsystemd0:amd64 (246.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.254_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.254) over (0.253) ... Setting up libdebconfclient0:amd64 (0.254) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.4.4-1_amd64.deb ... Unpacking libseccomp2:amd64 (2.4.4-1) over (2.4.3-1+b1) ... Setting up libseccomp2:amd64 (2.4.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6617 files and directories currently installed.) Preparing to unpack .../libudev1_246.6-1_amd64.deb ... Unpacking libudev1:amd64 (246.6-1) over (246.5-1) ... Setting up libudev1:amd64 (246.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6617 files and directories currently installed.) Preparing to unpack .../sweed_3.2.1+dfsg-5_amd64.deb ... Unpacking sweed (3.2.1+dfsg-5) over (3.2.1+dfsg-2) ... Setting up sweed (3.2.1+dfsg-5) ... Processing triggers for libc-bin (2.31-3) ... 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', '-yf', 'dist-upgrade'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.2s DUMP: b39100215e25663fb7502051eb6377bf - 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'show', '--no-all-versions', 'sweed'] 0m16.3s DUMP: Package: sweed Version: 3.2.1+dfsg-5 Installed-Size: 151 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29) Description-en: assessment of SNPs for their evolutionary advantage Biological sequences are available in ever increasing abundance across ever larger populations for ever increasing fractions of the genome. This tool sorts the SNPs for their active or passive contribution to a genetic drift, i.e. to see particular sequences at a higher fraction over time. Description-md5: 8ff0c702fca9de5362a10d068b3e3bc3 Homepage: https://sco.h-its.org/exelixis/web/software/sweed/ Section: science Priority: optional Filename: pool/main/s/sweed/sweed_3.2.1+dfsg-5_amd64.deb Size: 65020 MD5sum: af4eb79a59b992e830c917b20142f171 SHA256: 650266cfceb657f5468c14e0f13c1233e7ea9b0bddd8d7993ed90e04e5eb0efb 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'show', '--no-all-versions', 'sweed'] 0m16.3s INFO: apt-cache knows about the following packages: sweed 0m16.3s INFO: Running scripts pre_install 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_database-server'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_database-server'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_exceptions'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_exceptions'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_extras'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_extras'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'policy'] 0m16.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'policy'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'policy', 'sweed'] 0m16.5s DUMP: sweed: Installed: 3.2.1+dfsg-5 Candidate: 3.2.1+dfsg-5 Version table: *** 3.2.1+dfsg-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'policy', 'sweed'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', '-y', 'install', 'sweed'] 0m16.7s DUMP: Reading package lists... Building dependency tree... Reading state information... sweed is already the newest version (3.2.1+dfsg-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', '-y', 'install', 'sweed'] 0m16.7s INFO: Running scripts post_install 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_install_exceptions'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_install_exceptions'] 0m16.7s INFO: Running scripts post_distupgrade 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m17.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m17.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m17.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m17.3s INFO: Running scripts pre_install 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_database-server'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_database-server'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_exceptions'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_extras'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_extras'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'policy'] 0m17.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'policy'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'policy', 'sweed'] 0m17.5s DUMP: sweed: Installed: 3.2.1+dfsg-5 Candidate: 3.2.1+dfsg-5 Version table: *** 3.2.1+dfsg-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-cache', 'policy', 'sweed'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', '-y', 'install', 'sweed=3.2.1+dfsg-5'] 0m17.8s DUMP: Reading package lists... Building dependency tree... Reading state information... sweed is already the newest version (3.2.1+dfsg-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', '-y', 'install', 'sweed=3.2.1+dfsg-5'] 0m17.8s INFO: Running scripts post_install 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_install_exceptions'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_install_exceptions'] 0m17.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m18.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m18.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', '-ac', '--ignore-obsolete'] 0m18.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', '-ac', '--ignore-obsolete'] 0m18.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.9s DUMP: 0.15.2 0m18.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.9s INFO: Running adequate version 0.15.2 now. 0m18.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'sweed'] 0m19.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'sweed'] 0m19.0s INFO: Running scripts pre_remove 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_remove_exceptions'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/pre_remove_exceptions'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.6s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.1.10 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-7 install ok installed bsdutils bsdutils 1:2.36-3 install ok installed coreutils coreutils 8.32-4 install ok installed dash dash 0.5.10.2-7 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.11.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.20.5 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.0-9 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-18 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.58 install ok installed libacl1:amd64 libacl1 2.2.53-8 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.1.10 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3+b1 install ok installed libblkid1:amd64 libblkid1 2.36-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-3 install ok installed libc6:amd64 libc6 2.31-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.254 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.6-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-6 install ok installed libgnutls30:amd64 libgnutls30 3.6.15-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libhogweed6:amd64 libhogweed6 3.6-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.36-3 install ok installed libnettle8:amd64 libnettle8 3.6-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.21-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.4.4-1 install ok installed libselinux1:amd64 libselinux1 3.1-2 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36-3 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 246.6-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20200918-1 install ok installed libudev1:amd64 libudev1 246.6-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36-3 install ok installed libzstd1:amd64 libzstd1 1.4.5+dfsg-4 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36-3 install ok installed ncurses-base ncurses-base 6.2+20200918-1 install ok installed ncurses-bin ncurses-bin 6.2+20200918-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.3-4 install ok installed sed sed 4.7-1 install ok installed sweed sweed 3.2.1+dfsg-5 install ok installed sysvinit-utils sysvinit-utils 2.96-5 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2020a-1 install ok installed util-linux util-linux 2.36-3 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', 'remove', 'sweed'] 0m20.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: sweed 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 155 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6622 files and directories currently installed.) Removing sweed (3.2.1+dfsg-5) ... 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', 'remove', 'sweed'] 0m20.1s INFO: Running scripts post_remove 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_remove_exceptions'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_remove_exceptions'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'dpkg', '--purge', 'sweed'] 0m20.1s DUMP: dpkg: warning: ignoring request to remove sweed which isn't installed 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'dpkg', '--purge', 'sweed'] 0m20.1s INFO: Running scripts post_purge 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_purge_exceptions'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_purge_exceptions'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'dpkg', '--purge', '--pending'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'dpkg', '--purge', '--pending'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'dpkg', '--remove', '--pending'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'dpkg', '--remove', '--pending'] 0m20.2s INFO: Running scripts post_test 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_test_exceptions'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'tmp/scripts/post_test_exceptions'] 0m20.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m20.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'dpkg-divert', '--list'] 0m20.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'dpkg-divert', '--list'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', 'clean'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpanx83dbo', 'apt-get', 'clean'] 0m20.6s DEBUG: Recording chroot state 0m21.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/shm'] 0m21.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/shm'] 0m21.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/console'] 0m21.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/console'] 0m21.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/ptmx'] 0m21.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/ptmx'] 0m21.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/pts'] 0m21.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/dev/pts'] 0m21.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/proc'] 0m21.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpanx83dbo/proc'] 0m21.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m21.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpanx83dbo'] 0m21.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpanx83dbo 0m21.6s INFO: PASS: Upgrading between Debian distributions. 0m21.6s INFO: PASS: All tests. 0m21.6s INFO: piuparts run ends. ret=0 End: 2020-09-22 15:28:30 GMT