Start: 2019-08-07 23:31:10 UTC [testing] Package: tandem-mass Version: 1:201702011-1 Installed-Size: 636 Maintainer: The Debichem Group Architecture: amd64 Depends: libc6 (>= 2.27), libexpat1 (>= 2.0.1), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Description: mass spectrometry software for protein identification Homepage: http://www.thegpm.org/TANDEM/ Description-md5: 125794d5a0c5e3977c7103dc8d02d373 Section: science Priority: optional Filename: pool/main/t/tandem-mass/tandem-mass_201702011-1_amd64.deb Size: 222692 MD5sum: 6843706201e50b7b111ce66cc78e45e1 SHA256: 630c9e705d15193685f6c6a951a9e6e179631d2d68bcd6d6cfcc7f62b6cef92e [sid] Package: tandem-mass Source: tandem-mass (1:201702011-1) Version: 1:201702011-1+b1 Installed-Size: 641 Maintainer: The Debichem Group Architecture: amd64 Depends: libc6 (>= 2.27), libexpat1 (>= 2.0.1), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Description: mass spectrometry software for protein identification Homepage: http://www.thegpm.org/TANDEM/ Description-md5: 125794d5a0c5e3977c7103dc8d02d373 Section: science Priority: optional Filename: pool/main/t/tandem-mass/tandem-mass_201702011-1+b1_amd64.deb Size: 225320 MD5sum: 5b65bca5cf98966b1f549b402125395b SHA256: 3118d4ed060fa22f8a1125d21c03eb3a1573b670b0db13320aede0ebbd622596 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt tandem-mass=1:201702011-1+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.0.2~201907311723~1.0.1-11-g98f8c745 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt tandem-mass=1:201702011-1+b1 0m0.0s INFO: Running on: Linux piu-slave-bm-a 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u4 (2019-07-19) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp7bei9q 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp7bei9q 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp7bei9q', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp7bei9q', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp7bei9q/proc'] 0m2.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp7bei9q/proc'] 0m2.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/pts'] 0m2.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/pts'] 0m2.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/ptmx'] 0m2.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/ptmx'] 0m2.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/console'] 0m2.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/console'] 0m2.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/shm'] 0m2.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/shm'] 0m2.7s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ bullseye main 0m2.7s DEBUG: Created policy-rc.d and chmodded it. 0m2.7s DEBUG: Created resolv.conf. 0m2.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp7bei9q/tmp/scripts/ 0m2.7s INFO: Running scripts post_chroot_unpack 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', 'update'] 0m9.9s DUMP: Get:1 http://mirror.bm.debian.org/debian bullseye InRelease [117 kB] Get:2 http://mirror.bm.debian.org/debian bullseye/main amd64 Packages [7916 kB] Get:3 http://mirror.bm.debian.org/debian bullseye/main Translation-en [5970 kB] Fetched 14.0 MB in 5s (2584 kB/s) Reading package lists... 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', 'update'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', '-yf', 'dist-upgrade'] 0m13.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: coreutils libncursesw6 libpcre3 libtinfo6 ncurses-base ncurses-bin sysvinit-utils tar zlib1g 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5143 kB of archives. After this operation, 16.4 kB disk space will be freed. Get:1 http://mirror.bm.debian.org/debian bullseye/main amd64 coreutils amd64 8.30-3+b1 [2708 kB] Get:2 http://mirror.bm.debian.org/debian bullseye/main amd64 ncurses-bin amd64 6.1+20190713-2 [414 kB] Get:3 http://mirror.bm.debian.org/debian bullseye/main amd64 tar amd64 1.30+dfsg-6+b1 [780 kB] Get:4 http://mirror.bm.debian.org/debian bullseye/main amd64 ncurses-base all 6.1+20190713-2 [263 kB] Get:5 http://mirror.bm.debian.org/debian bullseye/main amd64 sysvinit-utils amd64 2.95-4 [81.6 kB] Get:6 http://mirror.bm.debian.org/debian bullseye/main amd64 libtinfo6 amd64 6.1+20190713-2 [331 kB] Get:7 http://mirror.bm.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.1+20190713-2 [133 kB] Get:8 http://mirror.bm.debian.org/debian bullseye/main amd64 libpcre3 amd64 2:8.39-12+b1 [341 kB] Get:9 http://mirror.bm.debian.org/debian bullseye/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+b1 [91.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5143 kB in 0s (38.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6469 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3+b1_amd64.deb ... Unpacking coreutils (8.30-3+b1) over (8.30-3) ... Setting up coreutils (8.30-3+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6470 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20190713-2_amd64.deb ... Unpacking ncurses-bin (6.1+20190713-2) over (6.1+20190713-1) ... Setting up ncurses-bin (6.1+20190713-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6470 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-6+b1_amd64.deb ... Unpacking tar (1.30+dfsg-6+b1) over (1.30+dfsg-6) ... Setting up tar (1.30+dfsg-6+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6471 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20190713-2_all.deb ... Unpacking ncurses-base (6.1+20190713-2) over (6.1+20190713-1) ... Setting up ncurses-base (6.1+20190713-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6471 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.95-4_amd64.deb ... Unpacking sysvinit-utils (2.95-4) over (2.95-2) ... Setting up sysvinit-utils (2.95-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6471 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20190713-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20190713-2) over (6.1+20190713-1) ... Setting up libtinfo6:amd64 (6.1+20190713-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6471 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20190713-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20190713-2) over (6.1+20190713-1) ... Setting up libncursesw6:amd64 (6.1+20190713-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6471 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-12+b1_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-12+b1) over (2:8.39-12) ... Setting up libpcre3:amd64 (2:8.39-12+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6472 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-1+b1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-1+b1) over (1:1.2.11.dfsg-1) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-1+b1) ... Processing triggers for libc-bin (2.28-10) ... 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', '-yf', 'dist-upgrade'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.0s DUMP: cdafdb79d704524dbbfce4405a4ac8e9 - 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.0s INFO: Running scripts post_setup 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_dummy_users'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_dummy_users'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_experimental'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_experimental'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_forbid_home'] 0m17.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_forbid_home'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_force-unsafe-io'] 0m17.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_force-unsafe-io'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_minimize'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_minimize'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_squeeze-backports'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_squeeze-backports'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_zz_backports'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_setup_zz_backports'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m17.1s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.72 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.8.6.3 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.3-3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190510-2 install ok installed gcc-9-base:amd64 gcc-9-base 9.1.0-10 install ok installed gpgv gpgv 2.2.17-3 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2 install ok installed libc-bin libc-bin 2.28-10 install ok installed libc6:amd64 libc6 2.28-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.45.3-3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.45.3-3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:9.1.0-10 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.8-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20190713-2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.1-2 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.45.3-3 install ok installed libstdc++6:amd64 libstdc++6 9.1.0-10 install ok installed libsystemd0:amd64 libsystemd0 241-7 install ok installed libtasn1-6:amd64 libtasn1-6 4.14-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20190713-2 install ok installed libudev1:amd64 libudev1 241-7 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3 install ok installed login login 1:4.7-2 install ok installed logsave logsave 1.45.3-3 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20190713-2 install ok installed ncurses-bin ncurses-bin 6.1+20190713-2 install ok installed passwd passwd 1:4.7-2 install ok installed perl-base perl-base 5.28.1-6 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.95-4 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019b-1 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+b1 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m17.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m17.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m19.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m19.0s INFO: Running scripts is_testable 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/is_testable_uninstallable'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/is_testable_uninstallable'] 0m19.1s INFO: Running scripts pre_test 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_test_exceptions'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_test_exceptions'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_test_root_password'] 0m19.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_test_root_password'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'show', '--no-all-versions', 'tandem-mass'] 0m19.6s DUMP: Package: tandem-mass Version: 1:201702011-1 Installed-Size: 636 Maintainer: The Debichem Group Architecture: amd64 Depends: libc6 (>= 2.27), libexpat1 (>= 2.0.1), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Description-en: mass spectrometry software for protein identification X! Tandem can match tandem mass spectra with peptide sequences, in a process that is commonly used to perform protein identification. . This software has a very simple, unsophisticated application programming interface (API): it simply takes an XML file of instructions on its command line, and outputs the results into an XML file, which has been specified in the input XML file. The output file format is described at http://www.thegpm.org/docs/X_series_output_form.pdf. . Unlike some earlier generation search engines, all of the X! Series search engines calculate statistical confidence (expectation values) for all of the individual spectrum-to-sequence assignments. They also reassemble all of the peptide assignments in a data set onto the known protein sequences and assign the statistical confidence that this assembly and alignment is non-random. The formula for which can be found here. Therefore, separate assembly and statistical analysis software, e.g. PeptideProphet and ProteinProphet, do not need to be used. Description-md5: 125794d5a0c5e3977c7103dc8d02d373 Homepage: http://www.thegpm.org/TANDEM/ Section: science Priority: optional Filename: pool/main/t/tandem-mass/tandem-mass_201702011-1_amd64.deb Size: 222692 MD5sum: 6843706201e50b7b111ce66cc78e45e1 SHA256: 630c9e705d15193685f6c6a951a9e6e179631d2d68bcd6d6cfcc7f62b6cef92e 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'show', '--no-all-versions', 'tandem-mass'] 0m19.6s INFO: apt-cache knows about the following packages: tandem-mass 0m19.6s INFO: Running scripts pre_install 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_database-server'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_database-server'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_exceptions'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_exceptions'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_extras'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_extras'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'policy'] 0m19.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin mirror.bm.debian.org Pinned packages: 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'policy'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'policy', 'tandem-mass'] 0m19.9s DUMP: tandem-mass: Installed: (none) Candidate: 1:201702011-1 Version table: 1:201702011-1 500 500 http://mirror.bm.debian.org/debian bullseye/main amd64 Packages 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'policy', 'tandem-mass'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', '-y', 'install', 'tandem-mass'] 0m21.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libexpat1 The following NEW packages will be installed: libexpat1 tandem-mass 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 328 kB of archives. After this operation, 1183 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.7-1 [106 kB] Get:2 http://mirror.bm.debian.org/debian bullseye/main amd64 tandem-mass amd64 1:201702011-1 [223 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 328 kB in 0s (4397 kB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6475 files and directories currently installed.) Preparing to unpack .../libexpat1_2.2.7-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.7-1) ... Selecting previously unselected package tandem-mass. Preparing to unpack .../tandem-mass_1%3a201702011-1_amd64.deb ... Unpacking tandem-mass (1:201702011-1) ... Setting up libexpat1:amd64 (2.2.7-1) ... Setting up tandem-mass (1:201702011-1) ... Processing triggers for libc-bin (2.28-10) ... 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', '-y', 'install', 'tandem-mass'] 0m21.9s INFO: Running scripts post_install 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_install_exceptions'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_install_exceptions'] 0m21.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m23.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m23.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp7bei9q to sid 0m23.0s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ sid main 0m23.0s INFO: Running scripts pre_distupgrade 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_distupgrade_exceptions'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_distupgrade_exceptions'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', 'update'] 0m30.1s DUMP: Get:1 http://mirror.bm.debian.org/debian sid InRelease [149 kB] Get:2 http://mirror.bm.debian.org/debian sid/main amd64 Packages [8392 kB] Get:3 http://mirror.bm.debian.org/debian sid/main Translation-en [6301 kB] Fetched 14.8 MB in 5s (2981 kB/s) Reading package lists... 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', 'update'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', '-yf', 'dist-upgrade'] 0m36.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpcre2-8-0 The following packages will be upgraded: bsdutils debconf e2fsprogs fdisk libblkid1 libcom-err2 libext2fs2 libfdisk1 libgnutls30 libmount1 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libss2 libuuid1 logsave mount tandem-mass util-linux 21 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 5711 kB of archives. After this operation, 909 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian sid/main amd64 bsdutils amd64 1:2.34-0.1 [121 kB] Get:2 http://mirror.bm.debian.org/debian sid/main amd64 libblkid1 amd64 2.34-0.1 [195 kB] Get:3 http://mirror.bm.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.32-5+b1 [213 kB] Get:4 http://mirror.bm.debian.org/debian sid/main amd64 libselinux1 amd64 2.9-2+b1 [87.6 kB] Get:5 http://mirror.bm.debian.org/debian sid/main amd64 libmount1 amd64 2.34-0.1 [210 kB] Get:6 http://mirror.bm.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.34-0.1 [158 kB] Get:7 http://mirror.bm.debian.org/debian sid/main amd64 libuuid1 amd64 2.34-0.1 [78.3 kB] Get:8 http://mirror.bm.debian.org/debian sid/main amd64 libfdisk1 amd64 2.34-0.1 [236 kB] Get:9 http://mirror.bm.debian.org/debian sid/main amd64 fdisk amd64 2.34-0.1 [180 kB] Get:10 http://mirror.bm.debian.org/debian sid/main amd64 util-linux amd64 2.34-0.1 [1084 kB] Get:11 http://mirror.bm.debian.org/debian sid/main amd64 debconf all 1.5.73 [145 kB] Get:12 http://mirror.bm.debian.org/debian sid/main amd64 logsave amd64 1.45.3-4 [71.2 kB] Get:13 http://mirror.bm.debian.org/debian sid/main amd64 libext2fs2 amd64 1.45.3-4 [245 kB] Get:14 http://mirror.bm.debian.org/debian sid/main amd64 e2fsprogs amd64 1.45.3-4 [590 kB] Get:15 http://mirror.bm.debian.org/debian sid/main amd64 mount amd64 2.34-0.1 [176 kB] Get:16 http://mirror.bm.debian.org/debian sid/main amd64 libgnutls30 amd64 3.6.9-3 [1168 kB] Get:17 http://mirror.bm.debian.org/debian sid/main amd64 libsepol1 amd64 2.9-2+b1 [265 kB] Get:18 http://mirror.bm.debian.org/debian sid/main amd64 libsemanage-common all 2.9-3 [20.8 kB] Get:19 http://mirror.bm.debian.org/debian sid/main amd64 libsemanage1 amd64 2.9-3 [96.5 kB] Get:20 http://mirror.bm.debian.org/debian sid/main amd64 libcom-err2 amd64 1.45.3-4 [70.5 kB] Get:21 http://mirror.bm.debian.org/debian sid/main amd64 libss2 amd64 1.45.3-4 [74.9 kB] Get:22 http://mirror.bm.debian.org/debian sid/main amd64 tandem-mass amd64 1:201702011-1+b1 [225 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5711 kB in 0s (47.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6490 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.34-0.1_amd64.deb ... Unpacking bsdutils (1:2.34-0.1) over (1:2.33.1-0.1) ... Setting up bsdutils (1:2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6490 files and directories currently installed.) Preparing to unpack .../libblkid1_2.34-0.1_amd64.deb ... Unpacking libblkid1:amd64 (2.34-0.1) over (2.33.1-0.1) ... Setting up libblkid1:amd64 (2.34-0.1) ... Selecting previously unselected package libpcre2-8-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6490 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.32-5+b1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.32-5+b1) ... Setting up libpcre2-8-0:amd64 (10.32-5+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../libselinux1_2.9-2+b1_amd64.deb ... Unpacking libselinux1:amd64 (2.9-2+b1) over (2.8-1+b1) ... Setting up libselinux1:amd64 (2.9-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../libmount1_2.34-0.1_amd64.deb ... Unpacking libmount1:amd64 (2.34-0.1) over (2.33.1-0.1) ... Setting up libmount1:amd64 (2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.34-0.1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.34-0.1) over (2.33.1-0.1) ... Setting up libsmartcols1:amd64 (2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../libuuid1_2.34-0.1_amd64.deb ... Unpacking libuuid1:amd64 (2.34-0.1) over (2.33.1-0.1) ... Setting up libuuid1:amd64 (2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.34-0.1_amd64.deb ... Unpacking libfdisk1:amd64 (2.34-0.1) over (2.33.1-0.1) ... Setting up libfdisk1:amd64 (2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../fdisk_2.34-0.1_amd64.deb ... Unpacking fdisk (2.34-0.1) over (2.33.1-0.1) ... Setting up fdisk (2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../util-linux_2.34-0.1_amd64.deb ... Unpacking util-linux (2.34-0.1) over (2.33.1-0.1) ... Setting up util-linux (2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../debconf_1.5.73_all.deb ... Unpacking debconf (1.5.73) over (1.5.72) ... Setting up debconf (1.5.73) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../logsave_1.45.3-4_amd64.deb ... Unpacking logsave (1.45.3-4) over (1.45.3-3) ... Preparing to unpack .../libext2fs2_1.45.3-4_amd64.deb ... Unpacking libext2fs2:amd64 (1.45.3-4) over (1.45.3-3) ... Setting up libext2fs2:amd64 (1.45.3-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.45.3-4_amd64.deb ... Unpacking e2fsprogs (1.45.3-4) over (1.45.3-3) ... Preparing to unpack .../mount_2.34-0.1_amd64.deb ... Unpacking mount (2.34-0.1) over (2.33.1-0.1) ... Preparing to unpack .../libgnutls30_3.6.9-3_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.9-3) over (3.6.8-2) ... Setting up libgnutls30:amd64 (3.6.9-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../libsepol1_2.9-2+b1_amd64.deb ... Unpacking libsepol1:amd64 (2.9-2+b1) over (2.8-1) ... Setting up libsepol1:amd64 (2.9-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6499 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.9-3_all.deb ... Unpacking libsemanage-common (2.9-3) over (2.8-2) ... Setting up libsemanage-common (2.9-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6500 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.9-3_amd64.deb ... Unpacking libsemanage1:amd64 (2.9-3) over (2.8-2) ... Setting up libsemanage1:amd64 (2.9-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6500 files and directories currently installed.) Preparing to unpack .../libcom-err2_1.45.3-4_amd64.deb ... Unpacking libcom-err2:amd64 (1.45.3-4) over (1.45.3-3) ... Preparing to unpack .../libss2_1.45.3-4_amd64.deb ... Unpacking libss2:amd64 (1.45.3-4) over (1.45.3-3) ... Preparing to unpack .../tandem-mass_1%3a201702011-1+b1_amd64.deb ... Unpacking tandem-mass (1:201702011-1+b1) over (1:201702011-1) ... Setting up libcom-err2:amd64 (1.45.3-4) ... Setting up tandem-mass (1:201702011-1+b1) ... Setting up libss2:amd64 (1.45.3-4) ... Setting up logsave (1.45.3-4) ... Setting up mount (2.34-0.1) ... Setting up e2fsprogs (1.45.3-4) ... Processing triggers for libc-bin (2.28-10) ... 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', '-yf', 'dist-upgrade'] 0m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m37.5s DUMP: 47b9dfdd966a376ed0a405ab03d12e95 - 0m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'show', '--no-all-versions', 'tandem-mass'] 0m38.0s DUMP: Package: tandem-mass Source: tandem-mass (1:201702011-1) Version: 1:201702011-1+b1 Installed-Size: 641 Maintainer: The Debichem Group Architecture: amd64 Depends: libc6 (>= 2.27), libexpat1 (>= 2.0.1), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Description-en: mass spectrometry software for protein identification X! Tandem can match tandem mass spectra with peptide sequences, in a process that is commonly used to perform protein identification. . This software has a very simple, unsophisticated application programming interface (API): it simply takes an XML file of instructions on its command line, and outputs the results into an XML file, which has been specified in the input XML file. The output file format is described at http://www.thegpm.org/docs/X_series_output_form.pdf. . Unlike some earlier generation search engines, all of the X! Series search engines calculate statistical confidence (expectation values) for all of the individual spectrum-to-sequence assignments. They also reassemble all of the peptide assignments in a data set onto the known protein sequences and assign the statistical confidence that this assembly and alignment is non-random. The formula for which can be found here. Therefore, separate assembly and statistical analysis software, e.g. PeptideProphet and ProteinProphet, do not need to be used. Description-md5: 125794d5a0c5e3977c7103dc8d02d373 Homepage: http://www.thegpm.org/TANDEM/ Section: science Priority: optional Filename: pool/main/t/tandem-mass/tandem-mass_201702011-1+b1_amd64.deb Size: 225320 MD5sum: 5b65bca5cf98966b1f549b402125395b SHA256: 3118d4ed060fa22f8a1125d21c03eb3a1573b670b0db13320aede0ebbd622596 0m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'show', '--no-all-versions', 'tandem-mass'] 0m38.1s INFO: apt-cache knows about the following packages: tandem-mass 0m38.1s INFO: Running scripts pre_install 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_database-server'] 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_database-server'] 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_exceptions'] 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_exceptions'] 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_extras'] 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_extras'] 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'policy'] 0m38.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror.bm.debian.org Pinned packages: 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'policy'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'policy', 'tandem-mass'] 0m38.4s DUMP: tandem-mass: Installed: 1:201702011-1+b1 Candidate: 1:201702011-1+b1 Version table: *** 1:201702011-1+b1 500 500 http://mirror.bm.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'policy', 'tandem-mass'] 0m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', '-y', 'install', 'tandem-mass'] 0m39.9s DUMP: Reading package lists... Building dependency tree... Reading state information... tandem-mass is already the newest version (1:201702011-1+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', '-y', 'install', 'tandem-mass'] 0m39.9s INFO: Running scripts post_install 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_install_exceptions'] 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_install_exceptions'] 0m39.9s INFO: Running scripts post_distupgrade 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_exceptions'] 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_exceptions'] 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_experimental'] 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_experimental'] 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_hack_debsums'] 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_hack_debsums'] 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_zz_backports'] 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_distupgrade_zz_backports'] 0m40.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m41.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m41.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m42.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m42.4s INFO: Running scripts pre_install 0m42.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_database-server'] 0m42.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_database-server'] 0m42.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_exceptions'] 0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_exceptions'] 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_extras'] 0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_extras'] 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_foreign_architecture'] 0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_foreign_architecture'] 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'policy'] 0m42.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror.bm.debian.org Pinned packages: 0m42.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'policy'] 0m42.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'policy', 'tandem-mass'] 0m42.8s DUMP: tandem-mass: Installed: 1:201702011-1+b1 Candidate: 1:201702011-1+b1 Version table: *** 1:201702011-1+b1 500 500 http://mirror.bm.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m42.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-cache', 'policy', 'tandem-mass'] 0m42.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', '-y', 'install', 'tandem-mass=1:201702011-1+b1'] 0m44.1s DUMP: Reading package lists... Building dependency tree... Reading state information... tandem-mass is already the newest version (1:201702011-1+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', '-y', 'install', 'tandem-mass=1:201702011-1+b1'] 0m44.1s INFO: Running scripts post_install 0m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_install_exceptions'] 0m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_install_exceptions'] 0m44.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m45.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m46.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp7bei9q', '-ac', '--ignore-obsolete'] 0m48.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp7bei9q', '-ac', '--ignore-obsolete'] 0m48.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m48.2s DUMP: 0.15.1 0m48.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m48.2s INFO: Running adequate version 0.15.1 now. 0m48.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tandem-mass'] 0m48.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tandem-mass'] 0m48.4s INFO: Running scripts pre_remove 0m48.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m48.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m48.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m49.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m49.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_remove_exceptions'] 0m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/pre_remove_exceptions'] 0m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m50.2s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.8.6.3 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.3-4 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.6.0+git+20190510-2 install ok installed gcc-9-base:amd64 gcc-9-base 9.1.0-10 install ok installed gpgv gpgv 2.2.17-3 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2 install ok installed libc-bin libc-bin 2.28-10 install ok installed libc6:amd64 libc6 2.28-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.45.3-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libexpat1:amd64 libexpat1 2.2.7-1 install ok installed libext2fs2:amd64 libext2fs2 1.45.3-4 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:9.1.0-10 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.9-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20190713-2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.32-5+b1 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.1-2 install ok installed libselinux1:amd64 libselinux1 2.9-2+b1 install ok installed libsemanage-common libsemanage-common 2.9-3 install ok installed libsemanage1:amd64 libsemanage1 2.9-3 install ok installed libsepol1:amd64 libsepol1 2.9-2+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.3-4 install ok installed libstdc++6:amd64 libstdc++6 9.1.0-10 install ok installed libsystemd0:amd64 libsystemd0 241-7 install ok installed libtasn1-6:amd64 libtasn1-6 4.14-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20190713-2 install ok installed libudev1:amd64 libudev1 241-7 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3 install ok installed login login 1:4.7-2 install ok installed logsave logsave 1.45.3-4 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20190713-2 install ok installed ncurses-bin ncurses-bin 6.1+20190713-2 install ok installed passwd passwd 1:4.7-2 install ok installed perl-base perl-base 5.28.1-6 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.95-4 install ok installed tandem-mass tandem-mass 1:201702011-1+b1 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019b-1 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+b1 0m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', 'remove', 'libexpat1:amd64', 'tandem-mass'] 0m52.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libexpat1 tandem-mass 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. After this operation, 1188 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6501 files and directories currently installed.) Removing tandem-mass (1:201702011-1+b1) ... Removing libexpat1:amd64 (2.2.7-1) ... Processing triggers for libc-bin (2.28-10) ... 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', 'remove', 'libexpat1:amd64', 'tandem-mass'] 0m52.1s INFO: Running scripts post_remove 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_remove_exceptions'] 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_remove_exceptions'] 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_remove_extras'] 0m52.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_remove_extras'] 0m52.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg', '--purge', 'libexpat1:amd64'] 0m52.2s DUMP: dpkg: warning: ignoring request to remove libexpat1 which isn't installed 0m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg', '--purge', 'libexpat1:amd64'] 0m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg', '--purge', 'tandem-mass'] 0m52.2s DUMP: dpkg: warning: ignoring request to remove tandem-mass which isn't installed 0m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg', '--purge', 'tandem-mass'] 0m52.2s INFO: Running scripts post_purge 0m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_purge_exceptions'] 0m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_purge_exceptions'] 0m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg', '--purge', '--pending'] 0m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg', '--purge', '--pending'] 0m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg', '--remove', '--pending'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg', '--remove', '--pending'] 0m52.3s INFO: Running scripts post_test 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_test_exceptions'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'tmp/scripts/post_test_exceptions'] 0m52.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m53.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg-divert', '--list'] 0m53.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'dpkg-divert', '--list'] 0m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', 'clean'] 0m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7bei9q', 'apt-get', 'clean'] 0m53.6s DEBUG: Recording chroot state 0m57.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/shm'] 0m57.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/shm'] 0m57.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/console'] 0m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/console'] 0m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/ptmx'] 0m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/ptmx'] 0m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/pts'] 0m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7bei9q/dev/pts'] 0m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7bei9q/proc'] 0m57.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7bei9q/proc'] 0m57.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m57.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp7bei9q'] 0m57.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp7bei9q 0m57.6s INFO: PASS: Upgrading between Debian distributions. 0m57.6s INFO: PASS: All tests. 0m57.6s INFO: piuparts run ends. ret=0 End: 2019-08-07 23:32:08 UTC