Start: 2022-11-27 04:25:54 GMT [testing] Package: toppred Source: toppred (1.10-9) Version: 1.10-9+b1 Installed-Size: 214 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgd3 (>= 2.1.0~alpha~) Description: transmembrane topology prediction Homepage: https://github.com/bioinfo-center-pasteur-fr/toppred Description-md5: 3b4bd629fd7f7ff93c878461d8aa9585 Section: science Priority: optional Filename: pool/main/t/toppred/toppred_1.10-9+b1_amd64.deb Size: 45104 MD5sum: c2b721c339c18a0976ca2846c2a868ac SHA256: ea24ad61b869ae9c977775df98c1f00541db6f0cafe0200bcbb5a04efb81bb3a [sid] Package: toppred Version: 1.10-10 Installed-Size: 213 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgd3 (>= 2.1.0~alpha~) Description: transmembrane topology prediction Homepage: https://github.com/bioinfo-center-pasteur-fr/toppred Description-md5: 3b4bd629fd7f7ff93c878461d8aa9585 Section: science Priority: optional Filename: pool/main/t/toppred/toppred_1.10-10_amd64.deb Size: 44420 MD5sum: 02621b4cd145a1161dd5a29b428d8055 SHA256: dad05a6ee3a1078fdc772e482d882544c09b70330d23ebfda1cccf7ed0904295 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt toppred=1.10-10 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt toppred=1.10-10 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpng1vzm71 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpng1vzm71 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/proc'] 0m2.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/proc'] 0m2.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/pts'] 0m2.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/pts'] 0m2.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/ptmx'] 0m2.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/ptmx'] 0m2.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/console'] 0m2.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/console'] 0m2.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/shm'] 0m2.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/shm'] 0m2.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.9s DEBUG: Created policy-rc.d and chmodded it. 0m2.9s DEBUG: Created resolv.conf. 0m2.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpng1vzm71/tmp/scripts/ 0m2.9s INFO: Running scripts post_chroot_unpack 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', 'update'] 0m5.9s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [164 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8766 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5922 kB] Fetched 14.9 MB in 2s (6808 kB/s) Reading package lists... 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', 'update'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', '-yf', 'dist-upgrade'] 0m8.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libdebconfclient0 libgcrypt20 libmount1 libsmartcols1 libuuid1 mount util-linux util-linux-extra 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2665 kB of archives. After this operation, 54.3 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 bsdutils amd64 1:2.38.1-3 [93.9 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libsmartcols1 amd64 2.38.1-3 [106 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 util-linux-extra amd64 2.38.1-3 [110 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 util-linux amd64 2.38.1-3 [1177 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 mount amd64 2.38.1-3 [134 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libblkid1 amd64 2.38.1-3 [147 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libdebconfclient0 amd64 0.265 [7720 B] Get:8 http://deb.debian.org/debian bookworm/main amd64 libgcrypt20 amd64 1.10.1-3 [696 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libmount1 amd64 2.38.1-3 [165 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libuuid1 amd64 2.38.1-3 [28.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2665 kB in 0s (27.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8605 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-3_amd64.deb ... Unpacking bsdutils (1:2.38.1-3) over (1:2.38.1-1.1+b1) ... Setting up bsdutils (1:2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8604 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38.1-3_amd64.deb ... Unpacking libsmartcols1:amd64 (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up libsmartcols1:amd64 (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8603 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.38.1-3_amd64.deb ... Unpacking util-linux-extra (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up util-linux-extra (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8602 files and directories currently installed.) Preparing to unpack .../util-linux_2.38.1-3_amd64.deb ... Unpacking util-linux (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up util-linux (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8600 files and directories currently installed.) Preparing to unpack .../mount_2.38.1-3_amd64.deb ... Unpacking mount (2.38.1-3) over (2.38.1-1.1+b1) ... Preparing to unpack .../libblkid1_2.38.1-3_amd64.deb ... Unpacking libblkid1:amd64 (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up libblkid1:amd64 (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8597 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.265_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.265) over (0.264) ... Setting up libdebconfclient0:amd64 (0.265) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8597 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.1-3_amd64.deb ... Unpacking libgcrypt20:amd64 (1.10.1-3) over (1.10.1-2) ... Setting up libgcrypt20:amd64 (1.10.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8597 files and directories currently installed.) Preparing to unpack .../libmount1_2.38.1-3_amd64.deb ... Unpacking libmount1:amd64 (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up libmount1:amd64 (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8596 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38.1-3_amd64.deb ... Unpacking libuuid1:amd64 (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up libuuid1:amd64 (2.38.1-3) ... Setting up mount (2.38.1-3) ... Processing triggers for libc-bin (2.36-5) ... 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', '-yf', 'dist-upgrade'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.5s DUMP: 05a7a6acf4c15f7ae42961249c8a05dd - 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.5s INFO: Running scripts post_setup 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_setup_dummy_users'] 0m9.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_setup_dummy_users'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_setup_forbid_home'] 0m9.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_setup_forbid_home'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_setup_minimize'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_setup_minimize'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_setup_zz_backports'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_setup_zz_backports'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.6s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed bsdutils bsdutils 1:2.38.1-3 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9+b1 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-9 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libblkid1:amd64 libblkid1 2.38.1-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-5 install ok installed libc6:amd64 libc6 2.36-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.7-0.1 install ok installed libmount1:amd64 libmount1 2.38.1-3 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-2 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b3 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b3 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-3 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 252.1-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 252.1-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-3 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-4 install ok installed perl-base perl-base 5.36.0-4 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-4 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.05-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 33 install ok installed usrmerge usrmerge 33 install ok installed util-linux util-linux 2.38.1-3 install ok installed util-linux-extra util-linux-extra 2.38.1-3 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m9.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m10.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m10.1s INFO: Running scripts is_testable 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/is_testable_uninstallable'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/is_testable_uninstallable'] 0m10.1s INFO: Running scripts pre_test 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_test_exceptions'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_test_exceptions'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_test_root_password'] 0m10.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_test_root_password'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'show', '--no-all-versions', 'toppred'] 0m10.4s DUMP: Package: toppred Source: toppred (1.10-9) Version: 1.10-9+b1 Installed-Size: 214 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgd3 (>= 2.1.0~alpha~) Description-en: transmembrane topology prediction Toppred is a program to determine the topology of a transmembrane protein based on G. von Heijne algorithm. . Each sequence from seq data in fasta format is processed, and toppred generate the Hydrophobycity profile of the sequence, and the corresponding hydrophobycities values in the file sequence-ID.hydro. . Furthermore, the predicted topologies are represented as png images. Each topology is stored in file sequence-ID-number.png . The hydrophobicity profile is computed using a window formed by a core rectangular window of size n, flanked by 2 triangular windows of size q. NB rectangular and triangular mean that the ponderation values inside those windows are respectively constant and variable. . This program is a new implementation of the original toppred program, based on G. von Heijne algorithm Description-md5: 3b4bd629fd7f7ff93c878461d8aa9585 Homepage: https://github.com/bioinfo-center-pasteur-fr/toppred Section: science Priority: optional Filename: pool/main/t/toppred/toppred_1.10-9+b1_amd64.deb Size: 45104 MD5sum: c2b721c339c18a0976ca2846c2a868ac SHA256: ea24ad61b869ae9c977775df98c1f00541db6f0cafe0200bcbb5a04efb81bb3a 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'show', '--no-all-versions', 'toppred'] 0m10.4s INFO: apt-cache knows about the following packages: toppred 0m10.4s INFO: Running scripts pre_install 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_database-server'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_database-server'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_exceptions'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_exceptions'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_extras'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_extras'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'policy'] 0m10.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'policy'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'policy', 'toppred'] 0m10.5s DUMP: toppred: Installed: (none) Candidate: 1.10-9+b1 Version table: 1.10-9+b1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'policy', 'toppred'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', '-y', 'install', 'toppred'] 0m14.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: fontconfig-config fonts-dejavu-core libabsl20220623 libaom3 libavif15 libbrotli1 libbsd0 libdav1d6 libde265-0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgav1-1 libgd3 libheif1 libjbig0 libjpeg62-turbo liblerc4 libmd0 libnuma1 libpng16-16 librav1e0 libsvtav1enc1 libtiff5 libwebp7 libx11-6 libx11-data libx265-199 libxau6 libxcb1 libxdmcp6 libxpm4 libyuv0 sensible-utils ucf Suggested packages: libgd-tools The following NEW packages will be installed: fontconfig-config fonts-dejavu-core libabsl20220623 libaom3 libavif15 libbrotli1 libbsd0 libdav1d6 libde265-0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgav1-1 libgd3 libheif1 libjbig0 libjpeg62-turbo liblerc4 libmd0 libnuma1 libpng16-16 librav1e0 libsvtav1enc1 libtiff5 libwebp7 libx11-6 libx11-data libx265-199 libxau6 libxcb1 libxdmcp6 libxpm4 libyuv0 sensible-utils toppred ucf 0 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 13.3 MB of archives. After this operation, 53.5 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043 [74.0 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.13.1-4.5 [281 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libabsl20220623 amd64 20220623.1-1 [391 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libaom3 amd64 3.5.0-1 [1796 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libdav1d6 amd64 1.0.0-2 [495 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libgav1-1 amd64 0.18.0-1+b1 [332 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 librav1e0 amd64 0.5.1-5 [762 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libsvtav1enc1 amd64 1.3.0+dfsg-1 [2126 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.2-1+b1 [169 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libyuv0 amd64 0.0~git20221018.8084f0b-1 [163 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libavif15 amd64 0.11.1-1 [93.8 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b5 [279 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-1 [117 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libde265-0 amd64 1.0.9-1 [247 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.38-2 [290 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-3 [420 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.13.1-4.5 [351 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.15-1 [24.9 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libx265-199 amd64 3.5-2+b1 [1150 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libheif1 amd64 1.13.0-1 [203 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.2-2+b2 [280 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libtiff5 amd64 4.4.0-5+b1 [302 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.1-2 [308 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.1-2 [772 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libgd3 amd64 2.3.3-7 [124 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 toppred amd64 1.10-9+b1 [45.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.3 MB in 0s (51.9 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8596 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package ucf. Preparing to unpack .../01-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../02-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../03-fontconfig-config_2.13.1-4.5_amd64.deb ... Unpacking fontconfig-config (2.13.1-4.5) ... Selecting previously unselected package libabsl20220623:amd64. Preparing to unpack .../04-libabsl20220623_20220623.1-1_amd64.deb ... Unpacking libabsl20220623:amd64 (20220623.1-1) ... Selecting previously unselected package libaom3:amd64. Preparing to unpack .../05-libaom3_3.5.0-1_amd64.deb ... Unpacking libaom3:amd64 (3.5.0-1) ... Selecting previously unselected package libdav1d6:amd64. Preparing to unpack .../06-libdav1d6_1.0.0-2_amd64.deb ... Unpacking libdav1d6:amd64 (1.0.0-2) ... Selecting previously unselected package libgav1-1:amd64. Preparing to unpack .../07-libgav1-1_0.18.0-1+b1_amd64.deb ... Unpacking libgav1-1:amd64 (0.18.0-1+b1) ... Selecting previously unselected package librav1e0:amd64. Preparing to unpack .../08-librav1e0_0.5.1-5_amd64.deb ... Unpacking librav1e0:amd64 (0.5.1-5) ... Selecting previously unselected package libsvtav1enc1:amd64. Preparing to unpack .../09-libsvtav1enc1_1.3.0+dfsg-1_amd64.deb ... Unpacking libsvtav1enc1:amd64 (1.3.0+dfsg-1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../10-libjpeg62-turbo_1%3a2.1.2-1+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Selecting previously unselected package libyuv0:amd64. Preparing to unpack .../11-libyuv0_0.0~git20221018.8084f0b-1_amd64.deb ... Unpacking libyuv0:amd64 (0.0~git20221018.8084f0b-1) ... Selecting previously unselected package libavif15:amd64. Preparing to unpack .../12-libavif15_0.11.1-1_amd64.deb ... Unpacking libavif15:amd64 (0.11.1-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../13-libbrotli1_1.0.9-2+b5_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b5) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../14-libmd0_1.0.4-2_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../15-libbsd0_0.11.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-1) ... Selecting previously unselected package libde265-0:amd64. Preparing to unpack .../16-libde265-0_1.0.9-1_amd64.deb ... Unpacking libde265-0:amd64 (1.0.9-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../17-libdeflate0_1.14-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.14-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../18-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../19-libpng16-16_1.6.38-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.38-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../20-libfreetype6_2.12.1+dfsg-3_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-3) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../21-libfontconfig1_2.13.1-4.5_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.5) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../22-libnuma1_2.0.15-1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.15-1) ... Selecting previously unselected package libx265-199:amd64. Preparing to unpack .../23-libx265-199_3.5-2+b1_amd64.deb ... Unpacking libx265-199:amd64 (3.5-2+b1) ... Selecting previously unselected package libheif1:amd64. Preparing to unpack .../24-libheif1_1.13.0-1_amd64.deb ... Unpacking libheif1:amd64 (1.13.0-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../25-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../26-liblerc4_4.0.0+ds-2_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-2) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../27-libwebp7_1.2.2-2+b2_amd64.deb ... Unpacking libwebp7:amd64 (1.2.2-2+b2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../28-libtiff5_4.4.0-5+b1_amd64.deb ... Unpacking libtiff5:amd64 (4.4.0-5+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../29-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../30-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../31-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../32-libx11-data_2%3a1.8.1-2_all.deb ... Unpacking libx11-data (2:1.8.1-2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../33-libx11-6_2%3a1.8.1-2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.1-2) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../34-libxpm4_1%3a3.5.12-1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-1) ... Selecting previously unselected package libgd3:amd64. Preparing to unpack .../35-libgd3_2.3.3-7_amd64.deb ... Unpacking libgd3:amd64 (2.3.3-7) ... Selecting previously unselected package toppred. Preparing to unpack .../36-toppred_1.10-9+b1_amd64.deb ... Unpacking toppred (1.10-9+b1) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up libaom3:amd64 (3.5.0-1) ... Setting up libabsl20220623:amd64 (20220623.1-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up libbrotli1:amd64 (1.0.9-2+b5) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up libsvtav1enc1:amd64 (1.3.0+dfsg-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up librav1e0:amd64 (0.5.1-5) ... Setting up libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Setting up libx11-data (2:1.8.1-2) ... Setting up libpng16-16:amd64 (1.6.38-2) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libgav1-1:amd64 (0.18.0-1+b1) ... Setting up libdav1d6:amd64 (1.0.0-2) ... Setting up libwebp7:amd64 (1.2.2-2+b2) ... Setting up libnuma1:amd64 (2.0.15-1) ... Setting up libmd0:amd64 (1.0.4-2) ... Setting up sensible-utils (0.0.17) ... Setting up libtiff5:amd64 (4.4.0-5+b1) ... Setting up libde265-0:amd64 (1.0.9-1) ... Setting up libbsd0:amd64 (0.11.7-1) ... Setting up libyuv0:amd64 (0.0~git20221018.8084f0b-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libavif15:amd64 (0.11.1-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up ucf (3.0043) ... Setting up libx265-199:amd64 (3.5-2+b1) ... Setting up libx11-6:amd64 (2:1.8.1-2) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up fontconfig-config (2.13.1-4.5) ... Setting up libheif1:amd64 (1.13.0-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.5) ... Setting up libgd3:amd64 (2.3.3-7) ... Setting up toppred (1.10-9+b1) ... Processing triggers for libc-bin (2.36-5) ... 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', '-y', 'install', 'toppred'] 0m14.8s INFO: Running scripts post_install 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_install_exceptions'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_install_exceptions'] 0m14.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m15.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m15.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpng1vzm71 to sid 0m15.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m15.3s INFO: Running scripts pre_distupgrade 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_distupgrade_exceptions'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_distupgrade_exceptions'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', 'update'] 0m19.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [161 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9402 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6948 kB] Fetched 16.5 MB in 3s (5421 kB/s) Reading package lists... 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', 'update'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', '-yf', 'dist-upgrade'] 0m22.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libjbig0 liblzma5 libmount1 libpng16-16 libsmartcols1 libtiff5 libuuid1 libyuv0 mount tar toppred util-linux util-linux-extra zlib1g 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3887 kB of archives. After this operation, 13.3 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.38.1-4 [94.2 kB] Get:2 http://deb.debian.org/debian sid/main amd64 tar amd64 1.34+dfsg-1.1 [836 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.38.1-4 [106 kB] Get:4 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.38.1-4 [110 kB] Get:5 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.38.1-4 [1176 kB] Get:6 http://deb.debian.org/debian sid/main amd64 mount amd64 2.38.1-4 [134 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.38.1-4 [147 kB] Get:8 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.2.8-0.0 [186 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.38.1-4 [165 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.38.1-4 [28.4 kB] Get:11 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.2.13.dfsg-1 [86.7 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6 [31.6 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.39-1 [275 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libtiff5 amd64 4.4.0-6 [302 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libyuv0 amd64 0.0~git20221118.ea26d7a-2 [164 kB] Get:16 http://deb.debian.org/debian sid/main amd64 toppred amd64 1.10-10 [44.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3887 kB in 0s (10.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9434 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-4_amd64.deb ... Unpacking bsdutils (1:2.38.1-4) over (1:2.38.1-3) ... Setting up bsdutils (1:2.38.1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9434 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1.1_amd64.deb ... Unpacking tar (1.34+dfsg-1.1) over (1.34+dfsg-1) ... Setting up tar (1.34+dfsg-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9434 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38.1-4_amd64.deb ... Unpacking libsmartcols1:amd64 (2.38.1-4) over (2.38.1-3) ... Setting up libsmartcols1:amd64 (2.38.1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9434 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.38.1-4_amd64.deb ... Unpacking util-linux-extra (2.38.1-4) over (2.38.1-3) ... Setting up util-linux-extra (2.38.1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9434 files and directories currently installed.) Preparing to unpack .../util-linux_2.38.1-4_amd64.deb ... Unpacking util-linux (2.38.1-4) over (2.38.1-3) ... Setting up util-linux (2.38.1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9434 files and directories currently installed.) Preparing to unpack .../mount_2.38.1-4_amd64.deb ... Unpacking mount (2.38.1-4) over (2.38.1-3) ... Preparing to unpack .../libblkid1_2.38.1-4_amd64.deb ... Unpacking libblkid1:amd64 (2.38.1-4) over (2.38.1-3) ... Setting up libblkid1:amd64 (2.38.1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9434 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.8-0.0_amd64.deb ... Unpacking liblzma5:amd64 (5.2.8-0.0) over (5.2.7-0.1) ... Setting up liblzma5:amd64 (5.2.8-0.0) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9434 files and directories currently installed.) Preparing to unpack .../libmount1_2.38.1-4_amd64.deb ... Unpacking libmount1:amd64 (2.38.1-4) over (2.38.1-3) ... Setting up libmount1:amd64 (2.38.1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9434 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38.1-4_amd64.deb ... Unpacking libuuid1:amd64 (2.38.1-4) over (2.38.1-3) ... Setting up libuuid1:amd64 (2.38.1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9434 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.13.dfsg-1) over (1:1.2.11.dfsg-4.1) ... Setting up zlib1g:amd64 (1:1.2.13.dfsg-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9434 files and directories currently installed.) Preparing to unpack .../libjbig0_2.1-6_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6) over (2.1-3.1+b2) ... Preparing to unpack .../libpng16-16_1.6.39-1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.39-1) over (1.6.38-2) ... Preparing to unpack .../libtiff5_4.4.0-6_amd64.deb ... Unpacking libtiff5:amd64 (4.4.0-6) over (4.4.0-5+b1) ... Preparing to unpack .../libyuv0_0.0~git20221118.ea26d7a-2_amd64.deb ... Unpacking libyuv0:amd64 (0.0~git20221118.ea26d7a-2) over (0.0~git20221018.8084f0b-1) ... Preparing to unpack .../toppred_1.10-10_amd64.deb ... Unpacking toppred (1.10-10) over (1.10-9+b1) ... Setting up toppred (1.10-10) ... Setting up libjbig0:amd64 (2.1-6) ... Setting up libpng16-16:amd64 (1.6.39-1) ... Setting up mount (2.38.1-4) ... Setting up libtiff5:amd64 (4.4.0-6) ... Setting up libyuv0:amd64 (0.0~git20221118.ea26d7a-2) ... Processing triggers for libc-bin (2.36-5) ... 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', '-yf', 'dist-upgrade'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m22.4s DUMP: 933c30e23a67fef2aa531bf4d7e7e126 - 0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'show', '--no-all-versions', 'toppred'] 0m22.6s DUMP: Package: toppred Version: 1.10-10 Installed-Size: 213 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgd3 (>= 2.1.0~alpha~) Description-en: transmembrane topology prediction Toppred is a program to determine the topology of a transmembrane protein based on G. von Heijne algorithm. . Each sequence from seq data in fasta format is processed, and toppred generate the Hydrophobycity profile of the sequence, and the corresponding hydrophobycities values in the file sequence-ID.hydro. . Furthermore, the predicted topologies are represented as png images. Each topology is stored in file sequence-ID-number.png . The hydrophobicity profile is computed using a window formed by a core rectangular window of size n, flanked by 2 triangular windows of size q. NB rectangular and triangular mean that the ponderation values inside those windows are respectively constant and variable. . This program is a new implementation of the original toppred program, based on G. von Heijne algorithm Description-md5: 3b4bd629fd7f7ff93c878461d8aa9585 Homepage: https://github.com/bioinfo-center-pasteur-fr/toppred Section: science Priority: optional Filename: pool/main/t/toppred/toppred_1.10-10_amd64.deb Size: 44420 MD5sum: 02621b4cd145a1161dd5a29b428d8055 SHA256: dad05a6ee3a1078fdc772e482d882544c09b70330d23ebfda1cccf7ed0904295 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'show', '--no-all-versions', 'toppred'] 0m22.6s INFO: apt-cache knows about the following packages: toppred 0m22.6s INFO: Running scripts pre_install 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_database-server'] 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_database-server'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_exceptions'] 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_exceptions'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_extras'] 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_extras'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'policy'] 0m22.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'policy'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'policy', 'toppred'] 0m22.7s DUMP: toppred: Installed: 1.10-10 Candidate: 1.10-10 Version table: *** 1.10-10 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'policy', 'toppred'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', '-y', 'install', 'toppred'] 0m23.2s DUMP: Reading package lists... Building dependency tree... Reading state information... toppred is already the newest version (1.10-10). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', '-y', 'install', 'toppred'] 0m23.2s INFO: Running scripts post_install 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_install_exceptions'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_install_exceptions'] 0m23.3s INFO: Running scripts post_distupgrade 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_distupgrade_zz_backports'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_distupgrade_zz_backports'] 0m23.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m23.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m23.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m24.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m24.3s INFO: Running scripts pre_install 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_database-server'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_database-server'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_exceptions'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_exceptions'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_extras'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_extras'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'policy'] 0m24.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'policy'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'policy', 'toppred'] 0m24.4s DUMP: toppred: Installed: 1.10-10 Candidate: 1.10-10 Version table: *** 1.10-10 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-cache', 'policy', 'toppred'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', '-y', 'install', 'toppred=1.10-10'] 0m25.0s DUMP: Reading package lists... Building dependency tree... Reading state information... toppred is already the newest version (1.10-10). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', '-y', 'install', 'toppred=1.10-10'] 0m25.0s INFO: Running scripts post_install 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_install_exceptions'] 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_install_exceptions'] 0m25.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m25.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m26.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', '-ac', '--ignore-obsolete'] 0m27.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', '-ac', '--ignore-obsolete'] 0m27.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.1s DUMP: 0.15.6 0m27.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.1s INFO: Running adequate version 0.15.6 now. 0m27.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'toppred'] 0m27.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'toppred'] 0m27.3s INFO: Running scripts pre_remove 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_remove_exceptions'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/pre_remove_exceptions'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m29.7s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9+b1 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed fontconfig-config fontconfig-config 2.13.1-4.5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-9 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libabsl20220623:amd64 libabsl20220623 20220623.1-1 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libaom3:amd64 libaom3 3.5.0-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libavif15:amd64 libavif15 0.11.1-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b5 install ok installed libbsd0:amd64 libbsd0 0.11.7-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-5 install ok installed libc6:amd64 libc6 2.36-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdav1d6:amd64 libdav1d6 1.0.0-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libde265-0:amd64 libde265-0 1.0.9-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.5 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-3 install ok installed libgav1-1:amd64 libgav1-1 0.18.0-1+b1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgd3:amd64 libgd3 2.3.3-7 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libheif1:amd64 libheif1 1.13.0-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libjbig0:amd64 libjbig0 2.1-6 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.2-1+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.8-0.0 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnuma1:amd64 libnuma1 2.0.15-1 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-2 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-4 install ok installed libpng16-16:amd64 libpng16-16 1.6.39-1 install ok installed librav1e0:amd64 librav1e0 0.5.1-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b3 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b3 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-9 install ok installed libsvtav1enc1:amd64 libsvtav1enc1 1.3.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 252.1-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtiff5:amd64 libtiff5 4.4.0-6 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 252.1-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libwebp7:amd64 libwebp7 1.2.2-2+b2 install ok installed libx11-6:amd64 libx11-6 2:1.8.1-2 install ok installed libx11-data libx11-data 2:1.8.1-2 install ok installed libx265-199:amd64 libx265-199 3.5-2+b1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libyuv0:amd64 libyuv0 0.0~git20221118.ea26d7a-2 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-4 install ok installed perl-base perl-base 5.36.0-4 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-4 install ok installed sed sed 4.8-1 install ok installed sensible-utils sensible-utils 0.0.17 install ok installed sysvinit-utils sysvinit-utils 3.05-7 install ok installed tar tar 1.34+dfsg-1.1 install ok installed toppred toppred 1.10-10 install ok installed tzdata tzdata 2022f-1 install ok installed ucf ucf 3.0043 install ok installed usr-is-merged usr-is-merged 33 install ok installed usrmerge usrmerge 33 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', 'remove', 'fontconfig-config', 'fonts-dejavu-core', 'libabsl20220623:amd64', 'libaom3:amd64', 'libavif15:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdav1d6:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgav1-1:amd64', 'libgd3:amd64', 'libheif1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libnuma1:amd64', 'libpng16-16:amd64', 'librav1e0:amd64', 'libsvtav1enc1:amd64', 'libtiff5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'libyuv0:amd64', 'sensible-utils', 'ucf', 'toppred'] 0m31.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: fontconfig-config fonts-dejavu-core libabsl20220623 libaom3 libavif15 libbrotli1 libbsd0 libdav1d6 libde265-0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgav1-1 libgd3 libheif1 libjbig0 libjpeg62-turbo liblerc4 libmd0 libnuma1 libpng16-16 librav1e0 libsvtav1enc1 libtiff5 libwebp7 libx11-6 libx11-data libx265-199 libxau6 libxcb1 libxdmcp6 libxpm4 libyuv0 sensible-utils toppred ucf 0 upgraded, 0 newly installed, 37 to remove and 0 not upgraded. After this operation, 53.5 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9431 files and directories currently installed.) Removing toppred (1.10-10) ... Removing libgd3:amd64 (2.3.3-7) ... Removing libfontconfig1:amd64 (2.13.1-4.5) ... Removing fontconfig-config (2.13.1-4.5) ... Removing fonts-dejavu-core (2.37-2) ... Removing libavif15:amd64 (0.11.1-1) ... Removing libgav1-1:amd64 (0.18.0-1+b1) ... Removing libabsl20220623:amd64 (20220623.1-1) ... Removing libheif1:amd64 (1.13.0-1) ... Removing libaom3:amd64 (3.5.0-1) ... Removing libfreetype6:amd64 (2.12.1+dfsg-3) ... Removing libbrotli1:amd64 (1.0.9-2+b5) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libx11-6:amd64 (2:1.8.1-2) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.7-1) ... Removing libdav1d6:amd64 (1.0.0-2) ... Removing libde265-0:amd64 (1.0.9-1) ... Removing libtiff5:amd64 (4.4.0-6) ... Removing libdeflate0:amd64 (1.14-1) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libjbig0:amd64 (2.1-6) ... Removing libyuv0:amd64 (0.0~git20221118.ea26d7a-2) ... Removing libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Removing liblerc4:amd64 (4.0.0+ds-2) ... Removing libmd0:amd64 (1.0.4-2) ... Removing libx265-199:amd64 (3.5-2+b1) ... Removing libnuma1:amd64 (2.0.15-1) ... Removing libpng16-16:amd64 (1.6.39-1) ... Removing librav1e0:amd64 (0.5.1-5) ... Removing libsvtav1enc1:amd64 (1.3.0+dfsg-1) ... Removing libwebp7:amd64 (1.2.2-2+b2) ... Removing libx11-data (2:1.8.1-2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.17) ... Processing triggers for libc-bin (2.36-5) ... 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', 'remove', 'fontconfig-config', 'fonts-dejavu-core', 'libabsl20220623:amd64', 'libaom3:amd64', 'libavif15:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdav1d6:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgav1-1:amd64', 'libgd3:amd64', 'libheif1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libnuma1:amd64', 'libpng16-16:amd64', 'librav1e0:amd64', 'libsvtav1enc1:amd64', 'libtiff5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'libyuv0:amd64', 'sensible-utils', 'ucf', 'toppred'] 0m31.2s INFO: Running scripts post_remove 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_remove_exceptions'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_remove_exceptions'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg', '--purge', 'fontconfig-config', 'fonts-dejavu-core', 'libabsl20220623:amd64', 'libaom3:amd64', 'libavif15:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdav1d6:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgav1-1:amd64', 'libgd3:amd64', 'libheif1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libnuma1:amd64', 'libpng16-16:amd64', 'librav1e0:amd64', 'libsvtav1enc1:amd64', 'libtiff5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'libyuv0:amd64', 'sensible-utils', 'ucf'] 0m31.7s DUMP: (Reading database ... 8615 files and directories currently installed.) Purging configuration files for fontconfig-config (2.13.1-4.5) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... dpkg: warning: ignoring request to remove libabsl20220623 which isn't installed dpkg: warning: ignoring request to remove libaom3 which isn't installed dpkg: warning: ignoring request to remove libavif15 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libdav1d6 which isn't installed dpkg: warning: ignoring request to remove libde265-0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgav1-1 which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libheif1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove librav1e0 which isn't installed dpkg: warning: ignoring request to remove libsvtav1enc1 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx265-199 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libyuv0 which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for ucf (3.0043) ... 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg', '--purge', 'fontconfig-config', 'fonts-dejavu-core', 'libabsl20220623:amd64', 'libaom3:amd64', 'libavif15:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdav1d6:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgav1-1:amd64', 'libgd3:amd64', 'libheif1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libnuma1:amd64', 'libpng16-16:amd64', 'librav1e0:amd64', 'libsvtav1enc1:amd64', 'libtiff5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'libyuv0:amd64', 'sensible-utils', 'ucf'] 0m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg', '--purge', 'toppred'] 0m31.7s DUMP: dpkg: warning: ignoring request to remove toppred which isn't installed 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg', '--purge', 'toppred'] 0m31.7s INFO: Running scripts post_purge 0m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_purge_exceptions'] 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_purge_exceptions'] 0m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg', '--purge', '--pending'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg', '--purge', '--pending'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg', '--remove', '--pending'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg', '--remove', '--pending'] 0m31.8s INFO: Running scripts post_test 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_test_exceptions'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'tmp/scripts/post_test_exceptions'] 0m31.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m32.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg-divert', '--list'] 0m32.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'dpkg-divert', '--list'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', 'clean'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpng1vzm71', 'apt-get', 'clean'] 0m32.2s DEBUG: Recording chroot state 0m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/shm'] 0m33.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/shm'] 0m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/console'] 0m33.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/console'] 0m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/ptmx'] 0m33.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/ptmx'] 0m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/pts'] 0m33.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/dev/pts'] 0m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/proc'] 0m33.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpng1vzm71/proc'] 0m33.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m33.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpng1vzm71'] 0m33.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpng1vzm71 0m33.6s INFO: PASS: Upgrading between Debian distributions. 0m33.6s INFO: PASS: All tests. 0m33.6s INFO: piuparts run ends. ret=0 End: 2022-11-27 04:26:28 GMT