Start: 2020-11-16 23:52:12 GMT [testing] Package: trace2dbest Version: 3.0.1-1 Installed-Size: 132 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl Description: bulk submission of chromatogram data to dbEST Homepage: http://www.nematodes.org/bioinformatics/trace2dbEST/ Description-md5: 6be234b56cdf72ac57faadc3cfc6ec4c Section: science Priority: optional Filename: pool/main/t/trace2dbest/trace2dbest_3.0.1-1_all.deb Size: 29432 MD5sum: 5fd040b6881823c55f37ef3455d5c6a3 SHA256: bc5d8e0cd5e79b9ddd16d7baa39ee2668f7d112877725621ac3c987b436c091b [sid] Package: trace2dbest Version: 3.0.1-2 Installed-Size: 135 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any Description: bulk submission of chromatogram data to dbEST Homepage: http://www.nematodes.org/bioinformatics/trace2dbEST/ Description-md5: 6be234b56cdf72ac57faadc3cfc6ec4c Section: science Priority: optional Filename: pool/main/t/trace2dbest/trace2dbest_3.0.1-2_all.deb Size: 29856 MD5sum: 63b0e94e2be90f359fc7eace26771593 SHA256: 10c574b7d9ec983057520edf1d8a97b74b7b30d73cff31090235ace4b5e504ad Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt trace2dbest=3.0.1-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.2~202004292056~1.1.1-20-gd7155993 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt trace2dbest=3.0.1-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpnjiy4000 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpnjiy4000 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpnjiy4000/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', 'update'] 0m5.1s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 Packages [7861 kB] Get:3 http://deb.debian.org/debian bullseye/main Translation-en [6012 kB] Fetched 14.0 MB in 3s (5222 kB/s) Reading package lists... 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', 'update'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', '-yf', 'dist-upgrade'] 0m5.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: dash libidn2-0 libseccomp2 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 249 kB of archives. After this operation, 194 kB disk space will be freed. Get:1 http://deb.debian.org/debian bullseye/main amd64 dash amd64 0.5.11+git20200708+dd9ef66-2 [114 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libidn2-0 amd64 2.3.0-3 [86.0 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libseccomp2 amd64 2.5.0-3 [48.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 249 kB in 0s (5945 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6650 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20200708+dd9ef66-2_amd64.deb ... Unpacking dash (0.5.11+git20200708+dd9ef66-2) over (0.5.10.2-7) ... Setting up dash (0.5.11+git20200708+dd9ef66-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6650 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.0-3_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.0-3) over (2.3.0-2) ... Setting up libidn2-0:amd64 (2.3.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6650 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.0-3_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.0-3) over (2.4.4-1+b1) ... Setting up libseccomp2:amd64 (2.5.0-3) ... Processing triggers for libc-bin (2.31-4) ... 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', '-yf', 'dist-upgrade'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s DUMP: 6bd6f037cc5f089310f5227dd0e7a47e - 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s INFO: Running scripts post_setup 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_setup_dummy_users'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_setup_dummy_users'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_setup_forbid_home'] 0m6.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_setup_forbid_home'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_setup_minimize'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_setup_minimize'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_setup_zz_backports'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_setup_zz_backports'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.8s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.1.11 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.48 install ok installed bash bash 5.1~rc2-1 install ok installed bsdutils bsdutils 1:2.36-3+b2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-2 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.20.5 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed findutils findutils 4.7.0+git20201010-2 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.0-16 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-18 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.58 install ok installed libacl1:amd64 libacl1 2.2.53-8 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.1.11 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3.1 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3.1 install ok installed libblkid1:amd64 libblkid1 2.36-3+b2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-4 install ok installed libc6:amd64 libc6 2.31-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.255 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.0-16 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-6 install ok installed libgnutls30:amd64 libgnutls30 3.6.15-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-10 install ok installed libhogweed6:amd64 libhogweed6 3.6-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-10 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-10 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-10 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.36-3+b2 install ok installed libnettle8:amd64 libnettle8 3.6-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnss-nis:amd64 libnss-nis 3.1-4 install ok installed libnss-nisplus:amd64 libnss-nisplus 1.3-4 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.21-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.0-3 install ok installed libselinux1:amd64 libselinux1 3.1-2+b1 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36-3+b2 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1h-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.0-16 install ok installed libsystemd0:amd64 libsystemd0 246.6-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20200918-1 install ok installed libtirpc-common libtirpc-common 1.2.6-3 install ok installed libtirpc3:amd64 libtirpc3 1.2.6-3 install ok installed libudev1:amd64 libudev1 246.6-2 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36-3+b2 install ok installed libzstd1:amd64 libzstd1 1.4.5+dfsg-4 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36-3+b2 install ok installed ncurses-base ncurses-base 6.2+20200918-1 install ok installed ncurses-bin ncurses-bin 6.2+20200918-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.3-4 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-5 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2020d-1 install ok installed util-linux util-linux 2.36-3+b2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m7.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m7.1s INFO: Running scripts is_testable 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s INFO: Running scripts pre_test 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_test_exceptions'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_test_exceptions'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_test_root_password'] 0m7.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_test_root_password'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'show', '--no-all-versions', 'trace2dbest'] 0m7.3s DUMP: Package: trace2dbest Version: 3.0.1-1 Installed-Size: 132 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl Description-en: bulk submission of chromatogram data to dbEST ESTs are short sequences derived from reverse-transcribed RNA. Their abundances yield insights in the expression of genes across tissues, support the discovery of new genes and allow one to assess the coverage of whole genome sequencing projects. Public databases like dbEST at the NCBI collect this data. . trace2dbEST process raw sequenceing chromatograph trace files from EST projects into quality-checked sequences, ready for submission to dbEST. trace2dbEST guides you through the creation of all the necessary files for submission of ESTs to dbEST. trace2dbest makes use of other software (available free under academic licence) that you will need to have installed, namely phred, cross_match and (optionally) BLAST. Description-md5: 6be234b56cdf72ac57faadc3cfc6ec4c Homepage: http://www.nematodes.org/bioinformatics/trace2dbEST/ Section: science Priority: optional Filename: pool/main/t/trace2dbest/trace2dbest_3.0.1-1_all.deb Size: 29432 MD5sum: 5fd040b6881823c55f37ef3455d5c6a3 SHA256: bc5d8e0cd5e79b9ddd16d7baa39ee2668f7d112877725621ac3c987b436c091b 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'show', '--no-all-versions', 'trace2dbest'] 0m7.3s INFO: apt-cache knows about the following packages: trace2dbest 0m7.3s INFO: Running scripts pre_install 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_database-server'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_database-server'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_exceptions'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_exceptions'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'policy'] 0m7.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'policy'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'policy', 'trace2dbest'] 0m7.4s DUMP: trace2dbest: Installed: (none) Candidate: 3.0.1-1 Version table: 3.0.1-1 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'policy', 'trace2dbest'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', '-y', 'install', 'trace2dbest'] 0m9.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libgdbm-compat4 libgdbm6 libperl5.30 perl perl-modules-5.30 Suggested packages: gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl Recommended packages: netbase The following NEW packages will be installed: libgdbm-compat4 libgdbm6 libperl5.30 perl perl-modules-5.30 trace2dbest 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. Need to get 7254 kB of archives. After this operation, 46.5 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.18.1-5.1 [64.4 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.18.1-5.1 [44.4 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.30.3-4 [290 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 trace2dbest all 3.0.1-1 [29.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7254 kB in 0s (20.6 MB/s) Selecting previously unselected package perl-modules-5.30. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6651 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.18.1-5.1_amd64.deb ... Unpacking libgdbm6:amd64 (1.18.1-5.1) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../2-libgdbm-compat4_1.18.1-5.1_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.18.1-5.1) ... Selecting previously unselected package libperl5.30:amd64. Preparing to unpack .../3-libperl5.30_5.30.3-4_amd64.deb ... Unpacking libperl5.30:amd64 (5.30.3-4) ... Selecting previously unselected package perl. Preparing to unpack .../4-perl_5.30.3-4_amd64.deb ... Unpacking perl (5.30.3-4) ... Selecting previously unselected package trace2dbest. Preparing to unpack .../5-trace2dbest_3.0.1-1_all.deb ... Unpacking trace2dbest (3.0.1-1) ... Setting up perl-modules-5.30 (5.30.3-4) ... Setting up libgdbm6:amd64 (1.18.1-5.1) ... Setting up libgdbm-compat4:amd64 (1.18.1-5.1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up perl (5.30.3-4) ... Setting up trace2dbest (3.0.1-1) ... Processing triggers for libc-bin (2.31-4) ... 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', '-y', 'install', 'trace2dbest'] 0m9.4s INFO: Running scripts post_install 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_install_exceptions'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_install_exceptions'] 0m9.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m9.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m9.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpnjiy4000 to sid 0m9.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m9.6s INFO: Running scripts pre_distupgrade 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', 'update'] 0m13.5s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [146 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8507 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6408 kB] Fetched 15.1 MB in 3s (4856 kB/s) Reading package lists... 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', 'update'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', '-yf', 'dist-upgrade'] 0m17.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.32 perl-modules-5.32 The following packages will be upgraded: bsdutils gcc-10-base grep libblkid1 libffi7 libgcc-s1 libgmp10 libmount1 libsmartcols1 libstdc++6 libuuid1 mount perl perl-base trace2dbest util-linux 16 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 12.7 MB of archives. After this operation, 43.5 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.36.1-1 [148 kB] Get:2 http://deb.debian.org/debian sid/main amd64 grep amd64 3.6-1 [398 kB] Get:3 http://deb.debian.org/debian sid/main amd64 perl-modules-5.32 all 5.32.0-5 [2821 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libperl5.32 amd64 5.32.0-5 [4119 kB] Get:5 http://deb.debian.org/debian sid/main amd64 perl amd64 5.32.0-5 [293 kB] Get:6 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.32.0-5 [1626 kB] Get:7 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.36.1-1 [1138 kB] Get:8 http://deb.debian.org/debian sid/main amd64 mount amd64 2.36.1-1 [184 kB] Get:9 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.2.0-17 [200 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 10.2.0-17 [492 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 10.2.0-17 [41.4 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.36.1-1 [192 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libffi7 amd64 3.3-5 [23.0 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.2.1+dfsg-1 [564 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.36.1-1 [210 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.36.1-1 [156 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.36.1-1 [82.6 kB] Get:18 http://deb.debian.org/debian sid/main amd64 trace2dbest all 3.0.1-2 [29.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.7 MB in 0s (30.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8605 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.36.1-1_amd64.deb ... Unpacking bsdutils (1:2.36.1-1) over (1:2.36-3+b2) ... Setting up bsdutils (1:2.36.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8604 files and directories currently installed.) Preparing to unpack .../archives/grep_3.6-1_amd64.deb ... Unpacking grep (3.6-1) over (3.4-1) ... Setting up grep (3.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8605 files and directories currently installed.) Preparing to unpack .../perl_5.32.0-5_amd64.deb ... Unpacking perl (5.32.0-5) over (5.30.3-4) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../perl-modules-5.32_5.32.0-5_all.deb ... Unpacking perl-modules-5.32 (5.32.0-5) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../libperl5.32_5.32.0-5_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.0-5) ... Preparing to unpack .../perl-base_5.32.0-5_amd64.deb ... Unpacking perl-base (5.32.0-5) over (5.30.3-4) ... Setting up perl-base (5.32.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10526 files and directories currently installed.) Preparing to unpack .../util-linux_2.36.1-1_amd64.deb ... Unpacking util-linux (2.36.1-1) over (2.36-3+b2) ... Setting up util-linux (2.36.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10526 files and directories currently installed.) Preparing to unpack .../mount_2.36.1-1_amd64.deb ... Unpacking mount (2.36.1-1) over (2.36-3+b2) ... Preparing to unpack .../gcc-10-base_10.2.0-17_amd64.deb ... Unpacking gcc-10-base:amd64 (10.2.0-17) over (10.2.0-16) ... Setting up gcc-10-base:amd64 (10.2.0-17) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10524 files and directories currently installed.) Preparing to unpack .../libffi7_3.3-5_amd64.deb ... Unpacking libffi7:amd64 (3.3-5) over (3.3-4) ... Setting up libffi7:amd64 (3.3-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10524 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.1+dfsg-1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.2.1+dfsg-1) over (2:6.2.0+dfsg-6) ... Setting up libgmp10:amd64 (2:6.2.1+dfsg-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10525 files and directories currently installed.) Preparing to unpack .../libmount1_2.36.1-1_amd64.deb ... Unpacking libmount1:amd64 (2.36.1-1) over (2.36-3+b2) ... Setting up libmount1:amd64 (2.36.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10524 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.36.1-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.36.1-1) over (2.36-3+b2) ... Setting up libsmartcols1:amd64 (2.36.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10523 files and directories currently installed.) Preparing to unpack .../libuuid1_2.36.1-1_amd64.deb ... Unpacking libuuid1:amd64 (2.36.1-1) over (2.36-3+b2) ... Setting up libuuid1:amd64 (2.36.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10522 files and directories currently installed.) Preparing to unpack .../trace2dbest_3.0.1-2_all.deb ... Unpacking trace2dbest (3.0.1-2) over (3.0.1-1) ... Setting up perl-modules-5.32 (5.32.0-5) ... Setting up libperl5.32:amd64 (5.32.0-5) ... Setting up mount (2.36.1-1) ... Setting up perl (5.32.0-5) ... Setting up trace2dbest (3.0.1-2) ... Processing triggers for libc-bin (2.31-4) ... 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', '-yf', 'dist-upgrade'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m18.0s DUMP: 2af00b061f76b6b5237e4a41c711d329 - 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'show', '--no-all-versions', 'trace2dbest'] 0m18.2s DUMP: Package: trace2dbest Version: 3.0.1-2 Installed-Size: 135 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any Description-en: bulk submission of chromatogram data to dbEST ESTs are short sequences derived from reverse-transcribed RNA. Their abundances yield insights in the expression of genes across tissues, support the discovery of new genes and allow one to assess the coverage of whole genome sequencing projects. Public databases like dbEST at the NCBI collect this data. . trace2dbEST process raw sequenceing chromatograph trace files from EST projects into quality-checked sequences, ready for submission to dbEST. trace2dbEST guides you through the creation of all the necessary files for submission of ESTs to dbEST. trace2dbest makes use of other software (available free under academic licence) that you will need to have installed, namely phred, cross_match and (optionally) BLAST. Description-md5: 6be234b56cdf72ac57faadc3cfc6ec4c Homepage: http://www.nematodes.org/bioinformatics/trace2dbEST/ Section: science Priority: optional Filename: pool/main/t/trace2dbest/trace2dbest_3.0.1-2_all.deb Size: 29856 MD5sum: 63b0e94e2be90f359fc7eace26771593 SHA256: 10c574b7d9ec983057520edf1d8a97b74b7b30d73cff31090235ace4b5e504ad 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'show', '--no-all-versions', 'trace2dbest'] 0m18.2s INFO: apt-cache knows about the following packages: trace2dbest 0m18.2s INFO: Running scripts pre_install 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_database-server'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_database-server'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_exceptions'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_exceptions'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_extras'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_extras'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'policy'] 0m18.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'policy'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'policy', 'trace2dbest'] 0m18.4s DUMP: trace2dbest: Installed: 3.0.1-2 Candidate: 3.0.1-2 Version table: *** 3.0.1-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'policy', 'trace2dbest'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', '-y', 'install', 'trace2dbest'] 0m18.8s DUMP: Reading package lists... Building dependency tree... Reading state information... trace2dbest is already the newest version (3.0.1-2). The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', '-y', 'install', 'trace2dbest'] 0m18.8s INFO: Running scripts post_install 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_install_exceptions'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_install_exceptions'] 0m18.8s INFO: Running scripts post_distupgrade 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_distupgrade_exceptions'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_distupgrade_exceptions'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_distupgrade_zz_backports'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_distupgrade_zz_backports'] 0m18.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m19.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m19.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m19.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m19.6s INFO: Running scripts pre_install 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_database-server'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_database-server'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_exceptions'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_exceptions'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_extras'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_extras'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'policy'] 0m19.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'policy'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'policy', 'trace2dbest'] 0m19.8s DUMP: trace2dbest: Installed: 3.0.1-2 Candidate: 3.0.1-2 Version table: *** 3.0.1-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-cache', 'policy', 'trace2dbest'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', '-y', 'install', 'trace2dbest=3.0.1-2'] 0m20.1s DUMP: Reading package lists... Building dependency tree... Reading state information... trace2dbest is already the newest version (3.0.1-2). The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', '-y', 'install', 'trace2dbest=3.0.1-2'] 0m20.1s INFO: Running scripts post_install 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_install_exceptions'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_install_exceptions'] 0m20.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m20.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m21.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', '-ac', '--ignore-obsolete'] 0m23.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', '-ac', '--ignore-obsolete'] 0m23.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.2s DUMP: 0.15.2 0m23.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.2s INFO: Running adequate version 0.15.2 now. 0m23.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'trace2dbest'] 0m23.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'trace2dbest'] 0m23.3s INFO: Running scripts pre_remove 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_remove_exceptions'] 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/pre_remove_exceptions'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m24.4s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.1.11 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.48 install ok installed bash bash 5.1~rc2-1 install ok installed bsdutils bsdutils 1:2.36.1-1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-2 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.20.5 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed findutils findutils 4.7.0+git20201010-2 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.0-17 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-18 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.58 install ok installed libacl1:amd64 libacl1 2.2.53-8 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.1.11 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3.1 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3.1 install ok installed libblkid1:amd64 libblkid1 2.36.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-4 install ok installed libc6:amd64 libc6 2.31-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.17-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.255 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libffi7:amd64 libffi7 3.3-5 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.0-17 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-5.1 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-5.1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.6.15-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-10 install ok installed libhogweed6:amd64 libhogweed6 3.6-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-10 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-10 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-10 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.36.1-1 install ok installed libnettle8:amd64 libnettle8 3.6-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnss-nis:amd64 libnss-nis 3.1-4 install ok installed libnss-nisplus:amd64 libnss-nisplus 1.3-4 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.21-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.30:amd64 libperl5.30 5.30.3-4 install ok installed libperl5.32:amd64 libperl5.32 5.32.0-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.0-3 install ok installed libselinux1:amd64 libselinux1 3.1-2+b1 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-1 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1h-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.0-17 install ok installed libsystemd0:amd64 libsystemd0 246.6-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20200918-1 install ok installed libtirpc-common libtirpc-common 1.2.6-3 install ok installed libtirpc3:amd64 libtirpc3 1.2.6-3 install ok installed libudev1:amd64 libudev1 246.6-2 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.5+dfsg-4 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-1 install ok installed ncurses-base ncurses-base 6.2+20200918-1 install ok installed ncurses-bin ncurses-bin 6.2+20200918-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.0-5 install ok installed perl-base perl-base 5.32.0-5 install ok installed perl-modules-5.30 perl-modules-5.30 5.30.3-4 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.0-5 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-5 install ok installed tar tar 1.30+dfsg-7 install ok installed trace2dbest trace2dbest 3.0.1-2 install ok installed tzdata tzdata 2020d-1 install ok installed util-linux util-linux 2.36.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', 'remove', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libperl5.30:amd64', 'libperl5.32:amd64', 'perl', 'perl-modules-5.30', 'perl-modules-5.32', 'trace2dbest'] 0m25.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libgdbm-compat4 libgdbm6 libperl5.30 libperl5.32 perl perl-modules-5.30 perl-modules-5.32 trace2dbest 0 upgraded, 0 newly installed, 8 to remove and 0 not upgraded. After this operation, 92.8 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10523 files and directories currently installed.) Removing libperl5.30:amd64 (5.30.3-4) ... Removing trace2dbest (3.0.1-2) ... Removing perl (5.32.0-5) ... Removing libperl5.32:amd64 (5.32.0-5) ... Removing libgdbm-compat4:amd64 (1.18.1-5.1) ... Removing libgdbm6:amd64 (1.18.1-5.1) ... Removing perl-modules-5.30 (5.30.3-4) ... Removing perl-modules-5.32 (5.32.0-5) ... Processing triggers for libc-bin (2.31-4) ... 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', 'remove', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libperl5.30:amd64', 'libperl5.32:amd64', 'perl', 'perl-modules-5.30', 'perl-modules-5.32', 'trace2dbest'] 0m25.2s INFO: Running scripts post_remove 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_remove_exceptions'] 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_remove_exceptions'] 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg', '--purge', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libperl5.30:amd64', 'libperl5.32:amd64', 'perl', 'perl-modules-5.30', 'perl-modules-5.32'] 0m25.3s DUMP: dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libperl5.30 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed (Reading database ... 6680 files and directories currently installed.) Purging configuration files for perl (5.32.0-5) ... dpkg: warning: ignoring request to remove perl-modules-5.30 which isn't installed dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg', '--purge', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libperl5.30:amd64', 'libperl5.32:amd64', 'perl', 'perl-modules-5.30', 'perl-modules-5.32'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg', '--purge', 'trace2dbest'] 0m25.3s DUMP: dpkg: warning: ignoring request to remove trace2dbest which isn't installed 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg', '--purge', 'trace2dbest'] 0m25.3s INFO: Running scripts post_purge 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_purge_exceptions'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_purge_exceptions'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg', '--purge', '--pending'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg', '--purge', '--pending'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg', '--remove', '--pending'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg', '--remove', '--pending'] 0m25.3s INFO: Running scripts post_test 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_test_exceptions'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'tmp/scripts/post_test_exceptions'] 0m25.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m25.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg-divert', '--list'] 0m25.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'dpkg-divert', '--list'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', 'clean'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnjiy4000', 'apt-get', 'clean'] 0m25.6s DEBUG: Recording chroot state 0m26.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/shm'] 0m26.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/shm'] 0m26.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/console'] 0m26.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/console'] 0m26.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/ptmx'] 0m26.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/ptmx'] 0m26.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/pts'] 0m26.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/dev/pts'] 0m26.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/proc'] 0m26.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnjiy4000/proc'] 0m26.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m26.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpnjiy4000'] 0m26.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpnjiy4000 0m26.6s INFO: PASS: Upgrading between Debian distributions. 0m26.6s INFO: PASS: All tests. 0m26.6s INFO: piuparts run ends. ret=0 End: 2020-11-16 23:52:39 GMT