Start: 2022-09-19 07:44:16 GMT [testing] Package: vcftools Version: 0.1.16-3 Installed-Size: 1670 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), zlib1g (>= 1:1.2.6), perl:any Recommends: tabix Description: Collection of tools to work with VCF files Homepage: https://vcftools.github.io/ Description-md5: 3179ec0db39e479129b6ddfca3efc506 Tag: role::program Section: science Priority: optional Filename: pool/main/v/vcftools/vcftools_0.1.16-3_amd64.deb Size: 425028 MD5sum: ea8eb2d66774f3aa2c2d60c66e51359d SHA256: efb138f642cc34ccde78813f4dfe8e0ba6fea9679247d85a858afa7d65e49c2e [sid] Package: vcftools Source: vcftools (0.1.16-3) Version: 0.1.16-3+b1 Installed-Size: 1663 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), zlib1g (>= 1:1.2.6), perl:any Recommends: tabix Description: Collection of tools to work with VCF files Homepage: https://vcftools.github.io/ Description-md5: 3179ec0db39e479129b6ddfca3efc506 Tag: role::program Section: science Priority: optional Filename: pool/main/v/vcftools/vcftools_0.1.16-3+b1_amd64.deb Size: 430600 MD5sum: a427e66ba8b17011be3ad49dfa00f859 SHA256: 392a1285c1ea60f737a22230423f6dd798c888258d502df31ad9a90c88496395 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt vcftools=0.1.16-3+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt vcftools=0.1.16-3+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpjcjk3ys7 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpjcjk3ys7 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/ptmx'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/ptmx'] 0m2.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/console'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/console'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/shm'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/shm'] 0m2.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.2s DEBUG: Created policy-rc.d and chmodded it. 0m2.2s DEBUG: Created resolv.conf. 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpjcjk3ys7/tmp/scripts/ 0m2.2s INFO: Running scripts post_chroot_unpack 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', 'update'] 0m5.0s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [157 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8490 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5782 kB] Fetched 14.4 MB in 2s (6762 kB/s) Reading package lists... 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', 'update'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', '-yf', 'dist-upgrade'] 0m6.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-12-base libgcc-s1 libstdc++6 libtasn1-6 usr-is-merged 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 932 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 gcc-12-base amd64 12.2.0-2 [208 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libstdc++6 amd64 12.2.0-2 [613 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgcc-s1 amd64 12.2.0-2 [50.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libtasn1-6 amd64 4.19.0-2 [56.6 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 usr-is-merged all 30 [4420 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 932 kB in 0s (21.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6593 files and directories currently installed.) Preparing to unpack .../gcc-12-base_12.2.0-2_amd64.deb ... Unpacking gcc-12-base:amd64 (12.2.0-2) over (12.2.0-1) ... Setting up gcc-12-base:amd64 (12.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6593 files and directories currently installed.) Preparing to unpack .../libstdc++6_12.2.0-2_amd64.deb ... Unpacking libstdc++6:amd64 (12.2.0-2) over (12.2.0-1) ... Setting up libstdc++6:amd64 (12.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6593 files and directories currently installed.) Preparing to unpack .../libgcc-s1_12.2.0-2_amd64.deb ... Unpacking libgcc-s1:amd64 (12.2.0-2) over (12.2.0-1) ... Setting up libgcc-s1:amd64 (12.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6593 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-2) over (4.18.0-4) ... Setting up libtasn1-6:amd64 (4.19.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6593 files and directories currently installed.) Preparing to unpack .../usr-is-merged_30_all.deb ... Unpacking usr-is-merged (30) over (29) ... Setting up usr-is-merged (30) ... Processing triggers for libc-bin (2.34-7) ... 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', '-yf', 'dist-upgrade'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.3s DUMP: c3da5929ee8be890d3134db18caedb57 - 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.3s INFO: Running scripts post_setup 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_setup_dummy_users'] 0m6.9s DUMP: useradd warning: dummy1000's uid 1000 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1001's uid 1001 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1002's uid 1002 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1003's uid 1003 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1004's uid 1004 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1005's uid 1005 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1006's uid 1006 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1007's uid 1007 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1008's uid 1008 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1009's uid 1009 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1010's uid 1010 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_setup_dummy_users'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_setup_forbid_home'] 0m6.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_setup_forbid_home'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_setup_minimize'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_setup_minimize'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_setup_zz_backports'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_setup_zz_backports'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.0s DUMP: install ok installed adduser adduser 3.129 install ok installed apt apt 2.5.2 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.6.0 install ok installed bash bash 5.2~rc2-2 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-2 install ok installed gpgv gpgv 2.2.39-1 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.64 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.2 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.34-7 install ok installed libc6:amd64 libc6 2.34-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.264 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-2 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-2 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-2 install ok installed libpam-runtime libpam-runtime 1.5.2-2 install ok installed libpam0g:amd64 libpam0g 1.5.2-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b1 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 251.4-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.4-3 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-5 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.04-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022c-1 install ok installed usr-is-merged usr-is-merged 30 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m7.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m7.3s INFO: Running scripts is_testable 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/is_testable_uninstallable'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/is_testable_uninstallable'] 0m7.3s INFO: Running scripts pre_test 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_test_exceptions'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_test_exceptions'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_test_root_password'] 0m7.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_test_root_password'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'show', '--no-all-versions', 'vcftools'] 0m7.5s DUMP: Package: vcftools Version: 0.1.16-3 Installed-Size: 1670 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), zlib1g (>= 1:1.2.6), perl:any Recommends: tabix Description-en: Collection of tools to work with VCF files VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide methods for working with VCF files: validating, merging, comparing and calculate some basic population genetic statistics. Description-md5: 3179ec0db39e479129b6ddfca3efc506 Homepage: https://vcftools.github.io/ Tag: role::program Section: science Priority: optional Filename: pool/main/v/vcftools/vcftools_0.1.16-3_amd64.deb Size: 425028 MD5sum: ea8eb2d66774f3aa2c2d60c66e51359d SHA256: efb138f642cc34ccde78813f4dfe8e0ba6fea9679247d85a858afa7d65e49c2e 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'show', '--no-all-versions', 'vcftools'] 0m7.5s INFO: apt-cache knows about the following packages: vcftools 0m7.5s INFO: Running scripts pre_install 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_database-server'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_database-server'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_exceptions'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_exceptions'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_extras'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_extras'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'policy'] 0m7.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'policy'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'policy', 'vcftools'] 0m7.6s DUMP: vcftools: Installed: (none) Candidate: 0.1.16-3 Version table: 0.1.16-3 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'policy', 'vcftools'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', '-y', 'install', 'vcftools'] 0m10.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libgdbm-compat4 libgdbm6 libperl5.34 perl perl-modules-5.34 Suggested packages: gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl Recommended packages: netbase tabix The following NEW packages will be installed: libgdbm-compat4 libgdbm6 libperl5.34 perl perl-modules-5.34 vcftools 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. Need to get 7891 kB of archives. After this operation, 49.8 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.34 all 5.34.0-5 [2850 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-2 [82.7 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-2 [58.6 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.34 amd64 5.34.0-5 [4177 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.34.0-5 [298 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 vcftools amd64 0.1.16-3 [425 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7891 kB in 1s (10.8 MB/s) Selecting previously unselected package perl-modules-5.34. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6595 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.34_5.34.0-5_all.deb ... Unpacking perl-modules-5.34 (5.34.0-5) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.23-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-2) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../2-libgdbm-compat4_1.23-2_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.23-2) ... Selecting previously unselected package libperl5.34:amd64. Preparing to unpack .../3-libperl5.34_5.34.0-5_amd64.deb ... Unpacking libperl5.34:amd64 (5.34.0-5) ... Selecting previously unselected package perl. Preparing to unpack .../4-perl_5.34.0-5_amd64.deb ... Unpacking perl (5.34.0-5) ... Selecting previously unselected package vcftools. Preparing to unpack .../5-vcftools_0.1.16-3_amd64.deb ... Unpacking vcftools (0.1.16-3) ... Setting up perl-modules-5.34 (5.34.0-5) ... Setting up libgdbm6:amd64 (1.23-2) ... Setting up libgdbm-compat4:amd64 (1.23-2) ... Setting up libperl5.34:amd64 (5.34.0-5) ... Setting up perl (5.34.0-5) ... Setting up vcftools (0.1.16-3) ... Processing triggers for libc-bin (2.34-7) ... 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', '-y', 'install', 'vcftools'] 0m10.6s INFO: Running scripts post_install 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_install_exceptions'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_install_exceptions'] 0m10.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m11.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m11.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpjcjk3ys7 to sid 0m11.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m11.0s INFO: Running scripts pre_distupgrade 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', 'update'] 0m14.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [158 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9347 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6903 kB] Fetched 16.4 MB in 3s (5306 kB/s) Reading package lists... 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', 'update'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', '-yf', 'dist-upgrade'] 0m17.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: coreutils e2fsprogs grep init-system-helpers libc-bin libc6 libcom-err2 libext2fs2 libss2 logsave lsb-base sysvinit-utils usr-is-merged vcftools 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 8603 kB of archives. After this operation, 214 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 coreutils amd64 8.32-4.1+b1 [2854 kB] Get:2 http://deb.debian.org/debian sid/main amd64 grep amd64 3.8-2 [432 kB] Get:3 http://deb.debian.org/debian sid/main amd64 usr-is-merged all 30+nmu1 [4732 B] Get:4 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.65.2 [49.8 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.34-8 [2766 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.34-8 [898 kB] Get:7 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.05-5 [31.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 lsb-base all 11.4 [22.4 kB] Get:9 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.46.6~rc1-1 [76.7 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libext2fs2 amd64 1.46.6~rc1-1 [259 kB] Get:11 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.46.6~rc1-1 [623 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.46.6~rc1-1 [75.9 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.46.6~rc1-1 [80.6 kB] Get:14 http://deb.debian.org/debian sid/main amd64 vcftools amd64 0.1.16-3+b1 [431 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8603 kB in 1s (14.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8694 files and directories currently installed.) Preparing to unpack .../coreutils_8.32-4.1+b1_amd64.deb ... Unpacking coreutils (8.32-4.1+b1) over (8.32-4.1) ... Setting up coreutils (8.32-4.1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8695 files and directories currently installed.) Preparing to unpack .../archives/grep_3.8-2_amd64.deb ... Unpacking grep (3.8-2) over (3.7-1) ... Setting up grep (3.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8697 files and directories currently installed.) Preparing to unpack .../usr-is-merged_30+nmu1_all.deb ... Unpacking usr-is-merged (30+nmu1) over (30) ... Setting up usr-is-merged (30+nmu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8697 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.65.2_all.deb ... Unpacking init-system-helpers (1.65.2) over (1.64) ... Setting up init-system-helpers (1.65.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8697 files and directories currently installed.) Preparing to unpack .../libc6_2.34-8_amd64.deb ... Unpacking libc6:amd64 (2.34-8) over (2.34-7) ... Setting up libc6:amd64 (2.34-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8697 files and directories currently installed.) Preparing to unpack .../libc-bin_2.34-8_amd64.deb ... Unpacking libc-bin (2.34-8) over (2.34-7) ... Setting up libc-bin (2.34-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8697 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.4_all.deb ... Unpacking lsb-base (11.4) over (11.2) ... Preparing to unpack .../sysvinit-utils_3.05-5_amd64.deb ... Unpacking sysvinit-utils (3.05-5) over (3.04-1) ... Setting up sysvinit-utils (3.05-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8696 files and directories currently installed.) Preparing to unpack .../logsave_1.46.6~rc1-1_amd64.deb ... Unpacking logsave (1.46.6~rc1-1) over (1.46.5-2) ... Preparing to unpack .../libext2fs2_1.46.6~rc1-1_amd64.deb ... Unpacking libext2fs2:amd64 (1.46.6~rc1-1) over (1.46.5-2) ... Setting up libext2fs2:amd64 (1.46.6~rc1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8696 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.46.6~rc1-1_amd64.deb ... Unpacking e2fsprogs (1.46.6~rc1-1) over (1.46.5-2) ... Preparing to unpack .../libcom-err2_1.46.6~rc1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.46.6~rc1-1) over (1.46.5-2) ... Preparing to unpack .../libss2_1.46.6~rc1-1_amd64.deb ... Unpacking libss2:amd64 (1.46.6~rc1-1) over (1.46.5-2) ... Preparing to unpack .../vcftools_0.1.16-3+b1_amd64.deb ... Unpacking vcftools (0.1.16-3+b1) over (0.1.16-3) ... Setting up vcftools (0.1.16-3+b1) ... Setting up lsb-base (11.4) ... Setting up libcom-err2:amd64 (1.46.6~rc1-1) ... Setting up libss2:amd64 (1.46.6~rc1-1) ... Setting up logsave (1.46.6~rc1-1) ... Setting up e2fsprogs (1.46.6~rc1-1) ... Processing triggers for libc-bin (2.34-8) ... 0m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', '-yf', 'dist-upgrade'] 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m18.2s DUMP: 876cac9b9e0e4cd9211a83488e8dbac0 - 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'show', '--no-all-versions', 'vcftools'] 0m18.4s DUMP: Package: vcftools Source: vcftools (0.1.16-3) Version: 0.1.16-3+b1 Installed-Size: 1663 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), zlib1g (>= 1:1.2.6), perl:any Recommends: tabix Description-en: Collection of tools to work with VCF files VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide methods for working with VCF files: validating, merging, comparing and calculate some basic population genetic statistics. Description-md5: 3179ec0db39e479129b6ddfca3efc506 Homepage: https://vcftools.github.io/ Tag: role::program Section: science Priority: optional Filename: pool/main/v/vcftools/vcftools_0.1.16-3+b1_amd64.deb Size: 430600 MD5sum: a427e66ba8b17011be3ad49dfa00f859 SHA256: 392a1285c1ea60f737a22230423f6dd798c888258d502df31ad9a90c88496395 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'show', '--no-all-versions', 'vcftools'] 0m18.4s INFO: apt-cache knows about the following packages: vcftools 0m18.4s INFO: Running scripts pre_install 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_database-server'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_database-server'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_exceptions'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_exceptions'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_extras'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_extras'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'policy'] 0m18.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'policy'] 0m18.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'policy', 'vcftools'] 0m18.5s DUMP: vcftools: Installed: 0.1.16-3+b1 Candidate: 0.1.16-3+b1 Version table: *** 0.1.16-3+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'policy', 'vcftools'] 0m18.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', '-y', 'install', 'vcftools'] 0m19.0s DUMP: Reading package lists... Building dependency tree... Reading state information... vcftools is already the newest version (0.1.16-3+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', '-y', 'install', 'vcftools'] 0m19.0s INFO: Running scripts post_install 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_install_exceptions'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_install_exceptions'] 0m19.0s INFO: Running scripts post_distupgrade 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_distupgrade_exceptions'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_distupgrade_exceptions'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_distupgrade_zz_backports'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_distupgrade_zz_backports'] 0m19.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m19.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m19.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m19.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m19.6s INFO: Running scripts pre_install 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_database-server'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_database-server'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_exceptions'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_exceptions'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_extras'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_extras'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'policy'] 0m19.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'policy'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'policy', 'vcftools'] 0m19.7s DUMP: vcftools: Installed: 0.1.16-3+b1 Candidate: 0.1.16-3+b1 Version table: *** 0.1.16-3+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-cache', 'policy', 'vcftools'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', '-y', 'install', 'vcftools=0.1.16-3+b1'] 0m20.1s DUMP: Reading package lists... Building dependency tree... Reading state information... vcftools is already the newest version (0.1.16-3+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', '-y', 'install', 'vcftools=0.1.16-3+b1'] 0m20.1s INFO: Running scripts post_install 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_install_exceptions'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_install_exceptions'] 0m20.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m20.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m20.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', '-ac', '--ignore-obsolete'] 0m21.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', '-ac', '--ignore-obsolete'] 0m21.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m21.6s DUMP: 0.15.6 0m21.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m21.6s INFO: Running adequate version 0.15.6 now. 0m21.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'vcftools'] 0m21.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'vcftools'] 0m21.8s INFO: Running scripts pre_remove 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_remove_exceptions'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/pre_remove_exceptions'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m22.5s DUMP: install ok installed adduser adduser 3.129 install ok installed apt apt 2.5.2 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.6.0 install ok installed bash bash 5.2~rc2-2 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed coreutils coreutils 8.32-4.1+b1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-2 install ok installed gpgv gpgv 2.2.39-1 install ok installed grep grep 3.8-2 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.2 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.34-8 install ok installed libc6:amd64 libc6 2.34-8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.264 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-2 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-2 install ok installed libgdbm6:amd64 libgdbm6 1.23-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-2 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-2 install ok installed libpam-runtime libpam-runtime 1.5.2-2 install ok installed libpam0g:amd64 libpam0g 1.5.2-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libperl5.34:amd64 libperl5.34 5.34.0-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b1 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libss2:amd64 libss2 1.46.6~rc1-1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 251.4-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.4-3 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.6~rc1-1 install ok installed lsb-base lsb-base 11.4 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl perl 5.34.0-5 install ok installed perl-base perl-base 5.34.0-5 install ok installed perl-modules-5.34 perl-modules-5.34 5.34.0-5 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.05-5 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022c-1 install ok installed usr-is-merged usr-is-merged 30+nmu1 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed vcftools vcftools 0.1.16-3+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', 'remove', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libperl5.34:amd64', 'perl', 'perl-modules-5.34', 'vcftools'] 0m23.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libgdbm-compat4 libgdbm6 libperl5.34 perl perl-modules-5.34 vcftools 0 upgraded, 0 newly installed, 6 to remove and 0 not upgraded. After this operation, 49.8 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8697 files and directories currently installed.) Removing vcftools (0.1.16-3+b1) ... Removing perl (5.34.0-5) ... Removing libperl5.34:amd64 (5.34.0-5) ... Removing libgdbm-compat4:amd64 (1.23-2) ... Removing libgdbm6:amd64 (1.23-2) ... Removing perl-modules-5.34 (5.34.0-5) ... Processing triggers for libc-bin (2.34-8) ... 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', 'remove', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libperl5.34:amd64', 'perl', 'perl-modules-5.34', 'vcftools'] 0m23.3s INFO: Running scripts post_remove 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_remove_exceptions'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_remove_exceptions'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg', '--purge', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libperl5.34:amd64', 'perl', 'perl-modules-5.34'] 0m23.3s DUMP: dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libperl5.34 which isn't installed (Reading database ... 6600 files and directories currently installed.) Purging configuration files for perl (5.34.0-5) ... dpkg: warning: ignoring request to remove perl-modules-5.34 which isn't installed 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg', '--purge', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libperl5.34:amd64', 'perl', 'perl-modules-5.34'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg', '--purge', 'vcftools'] 0m23.3s DUMP: dpkg: warning: ignoring request to remove vcftools which isn't installed 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg', '--purge', 'vcftools'] 0m23.3s INFO: Running scripts post_purge 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_purge_exceptions'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_purge_exceptions'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg', '--purge', '--pending'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg', '--purge', '--pending'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg', '--remove', '--pending'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg', '--remove', '--pending'] 0m23.3s INFO: Running scripts post_test 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_test_exceptions'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'tmp/scripts/post_test_exceptions'] 0m23.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m23.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg-divert', '--list'] 0m23.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'dpkg-divert', '--list'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', 'clean'] 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7', 'apt-get', 'clean'] 0m23.7s DEBUG: Recording chroot state 0m24.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/shm'] 0m24.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/shm'] 0m24.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/console'] 0m24.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/console'] 0m24.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/ptmx'] 0m24.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/ptmx'] 0m24.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/pts'] 0m24.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/dev/pts'] 0m24.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/proc'] 0m24.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7/proc'] 0m24.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m24.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjcjk3ys7'] 0m24.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpjcjk3ys7 0m24.4s INFO: PASS: Upgrading between Debian distributions. 0m24.4s INFO: PASS: All tests. 0m24.4s INFO: piuparts run ends. ret=0 End: 2022-09-19 07:44:41 GMT