Start: 2024-01-01 03:54:51 GMT [testing] Package: xpore Version: 2.1-1 Installed-Size: 146 Maintainer: Debian Med Packaging Team Architecture: all Depends: pyensembl, python3-h5py-serial, python3-numpy, python3-pandas, python3-scipy, python3-ujson, python3-yaml, python3:any Suggests: xpore-doc Description: Nanopore analysis of differential RNA modifications Homepage: https://github.com/GoekeLab/xpore/ Description-md5: 0493c5291452f14d39a3ce9aeea20ba2 Section: science Priority: optional Filename: pool/main/x/xpore/xpore_2.1-1_all.deb Size: 30508 MD5sum: f5d86939b2152015c9690599fd5436af SHA256: 5af28afa9e5d8321b17a7a425a28f58bf29e618743d6a696a0a93cf70cde3322 [sid] Package: xpore Version: 2.1-2 Installed-Size: 160 Maintainer: Debian Med Packaging Team Architecture: all Depends: pyensembl, python3-h5py, python3-numpy, python3-pandas, python3-scipy, python3-ujson, python3-yaml, python3:any Suggests: xpore-doc Description: Nanopore analysis of differential RNA modifications Homepage: https://github.com/GoekeLab/xpore/ Description-md5: 0493c5291452f14d39a3ce9aeea20ba2 Section: science Priority: optional Filename: pool/main/x/xpore/xpore_2.1-2_all.deb Size: 34744 MD5sum: 5bd8c47a037fe2c4c8ab7e0ea8cc93dc SHA256: 8f56089b74752a027e9d7280e42584548f8c3d543b98c89f1e191c2d2799ba8e Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt xpore=2.1-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt xpore=2.1-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-26-amd64 #1 SMP Debian 5.10.197-1 (2023-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpwkncf1hd 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpwkncf1hd 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/pts'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/pts'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/ptmx'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/ptmx'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpwkncf1hd/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', 'update'] 0m2.4s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', 'update'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s DUMP: c39ed9ca72afa1f69a1eea88b0965329 - 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s INFO: Running scripts post_setup 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u4 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u3 install ok installed libc6:amd64 libc6 2.36-9+deb12u3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.19-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.19-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-5+deb12u1 install ok installed usr-is-merged usr-is-merged 35 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m4.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 0m4.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 0m4.4s INFO: Running scripts is_testable 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/is_testable_uninstallable'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/is_testable_uninstallable'] 0m4.4s INFO: Running scripts pre_test 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_test_root_password'] 0m4.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_test_root_password'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'show', '--no-all-versions', 'xpore'] 0m4.7s DUMP: Package: xpore Version: 2.1-1 Installed-Size: 146 Maintainer: Debian Med Packaging Team Architecture: all Depends: pyensembl, python3-h5py-serial, python3-numpy, python3-pandas, python3-scipy, python3-ujson, python3-yaml, python3:any Suggests: xpore-doc Description-en: Nanopore analysis of differential RNA modifications RNA is transcribed from DNA, possibly spliced and exported to the cytoplasm - fine - but its bases can also be modified, edited, and not all such modifications are visible by Sanger sequencing methods and its derivatives. . The Nanopore measures potentials, and if the bases have a different shape then this is measured - not necessarily in an interpretable manner, something must be left for mass spectrometry, but one may be pointed to a difference. And maybe one can even statistically associate such differences with a molecular or clinical phenotype. Description-md5: 0493c5291452f14d39a3ce9aeea20ba2 Homepage: https://github.com/GoekeLab/xpore/ Section: science Priority: optional Filename: pool/main/x/xpore/xpore_2.1-1_all.deb Size: 30508 MD5sum: f5d86939b2152015c9690599fd5436af SHA256: 5af28afa9e5d8321b17a7a425a28f58bf29e618743d6a696a0a93cf70cde3322 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'show', '--no-all-versions', 'xpore'] 0m4.7s INFO: apt-cache knows about the following packages: xpore 0m4.7s INFO: Running scripts pre_install 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'policy'] 0m4.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.4,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'policy'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'policy', 'xpore'] 0m4.9s DUMP: xpore: Installed: (none) Candidate: 2.1-1 Version table: 2.1-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'policy', 'xpore'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', '-y', 'install', 'xpore'] 0m53.4s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-12 g++ g++-12 gcc gcc-12 libaec0 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libdouble-conversion3 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 liblzf1 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsz2 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev libyaml-0-2 linux-libc-dev media-types openssl pyensembl pylint python3 python3-all python3-all-dev python3-appdirs python3-astroid python3-beniget python3-certifi python3-chardet python3-charset-normalizer python3-datacache python3-dateutil python3-decorator python3-dev python3-dill python3-distutils python3-gast python3-gtfparse python3-h5py-serial python3-idna python3-importlib-metadata python3-isort python3-lazy-object-proxy python3-lib2to3 python3-logilab-common python3-mccabe python3-memoized-property python3-minimal python3-mock python3-more-itertools python3-mypy-extensions python3-nose python3-numpy python3-pandas python3-pandas-lib python3-pbr python3-pkg-resources python3-platformdirs python3-ply python3-pythran python3-requests python3-scipy python3-serializable python3-setuptools python3-simplejson python3-six python3-toml python3-tomlkit python3-typechecks python3-typing-extensions python3-tz python3-ujson python3-urllib3 python3-wrapt python3-yaml python3-zipp python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev Suggested packages: binutils-doc cpp-doc gcc-12-locales cpp-12-doc g++-multilib g++-12-multilib gcc-12-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc krb5-doc krb5-user libstdc++-12-doc libxsimd-doc pylint-doc python3-doc python3-tk python3-venv python3-objgraph python3-h5py python-h5py-doc python-mock-doc python-nose-doc gfortran python3-pytest python-pandas-doc python3-statsmodels python-ply-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python3-brotli python3.11-venv python3.11-doc binfmt-support readline-doc xpore-doc Recommended packages: manpages manpages-dev libc-devtools javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-tk python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-pil The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-12 g++ g++-12 gcc gcc-12 libaec0 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libdouble-conversion3 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 liblzf1 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsz2 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev libyaml-0-2 linux-libc-dev media-types openssl pyensembl pylint python3 python3-all python3-all-dev python3-appdirs python3-astroid python3-beniget python3-certifi python3-chardet python3-charset-normalizer python3-datacache python3-dateutil python3-decorator python3-dev python3-dill python3-distutils python3-gast python3-gtfparse python3-h5py-serial python3-idna python3-importlib-metadata python3-isort python3-lazy-object-proxy python3-lib2to3 python3-logilab-common python3-mccabe python3-memoized-property python3-minimal python3-mock python3-more-itertools python3-mypy-extensions python3-nose python3-numpy python3-pandas python3-pandas-lib python3-pbr python3-pkg-resources python3-platformdirs python3-ply python3-pythran python3-requests python3-scipy python3-serializable python3-setuptools python3-simplejson python3-six python3-toml python3-tomlkit python3-typechecks python3-typing-extensions python3-tz python3-ujson python3-urllib3 python3-wrapt python3-yaml python3-zipp python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto xpore zlib1g-dev 0 upgraded, 152 newly installed, 0 to remove and 0 not upgraded. Need to get 142 MB of archives. After this operation, 757 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.11-1~deb12u2 [2019 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:22 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.11-1~deb12u2 [1419 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.40-2 [2487 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.40-2 [572 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.40-2 [153 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.40-2 [89.8 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.40-2 [812 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.40-2 [2246 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.40-2 [65.0 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1 [690 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-14 [9764 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-3 [6836 B] Get:38 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-14 [41.7 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-14 [26.1 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:42 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-14 [2195 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-14 [969 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-14 [2196 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-14 [883 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-14 [2437 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-14 [19.3 MB] Get:49 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-3 [5216 B] Get:50 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-9+deb12u3 [45.2 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.1.66-1 [1905 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-9+deb12u3 [1898 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-14 [2046 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-14 [10.7 MB] Get:59 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-3 [1356 B] Get:60 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:64 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u4 [390 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libdouble-conversion3 amd64 3.2.1-1 [41.5 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get:77 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-100 amd64 1.10.8+repack1-1 [67.8 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 liblzf1 amd64 3.6-3 [10.2 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get:93 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get:94 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 python3-typing-extensions all 4.4.0-1 [45.2 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 python3-lazy-object-proxy amd64 1.9.0-1+b1 [21.5 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 python3-wrapt amd64 1.14.1-2+b2 [42.1 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 python3-astroid all 2.14.2-1 [209 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 python3-isort all 5.6.4-1 [63.2 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get:109 http://deb.debian.org/debian bookworm/main amd64 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 python3-mypy-extensions all 0.4.3-4 [5788 B] Get:111 http://deb.debian.org/debian bookworm/main amd64 python3-logilab-common all 1.9.8-1 [380 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 python3-dill all 0.3.6-1 [79.5 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 python3-mccabe all 0.7.0-1 [10.5 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 python3-platformdirs all 2.6.0-1 [16.3 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 python3-tomlkit all 0.11.7-1 [40.5 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 pylint all 2.16.2-2 [339 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 python3-pbr all 5.10.0-2 [61.4 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 python3-mock all 4.0.3-4 [64.0 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1 [39.4 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 python3-typechecks all 0.1.0+ds-3 [4484 B] Get:132 http://deb.debian.org/debian bookworm/main amd64 python3-datacache all 1.2.1-1 [12.6 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 python3-gtfparse all 1.3.0+ds-1 [10.1 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 python3-memoized-property all 1.0.3-2 [5552 B] Get:135 http://deb.debian.org/debian bookworm/main amd64 python3-nose all 1.3.7-9 [130 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 python3-simplejson amd64 3.18.3-1 [59.8 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 python3-serializable all 0.2.1+ds-2 [8176 B] Get:138 http://deb.debian.org/debian bookworm/main amd64 pyensembl all 2.2.4+ds-1 [35.0 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get:140 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get:143 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:144 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:145 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 python3-h5py-serial amd64 3.7.0-8 [804 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get:150 http://deb.debian.org/debian bookworm/main amd64 python3-ujson amd64 5.7.0-1 [24.2 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 xpore all 2.1-1 [30.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 142 MB in 2s (65.3 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6100 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.11-1~deb12u2_amd64.deb ... Unpacking libssl3:amd64 (3.0.11-1~deb12u2) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. 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Preparing to unpack .../061-liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../062-liblbfgsb0_3.0+dfsg.4-1_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Selecting previously unselected package liblzf1:amd64. Preparing to unpack .../063-liblzf1_3.6-3_amd64.deb ... Unpacking liblzf1:amd64 (3.6-3) ... Selecting previously unselected package libopenblas0:amd64. Preparing to unpack .../064-libopenblas0_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas0:amd64 (0.3.21+ds-4) ... Selecting previously unselected package libopenblas-pthread-dev:amd64. Preparing to unpack .../065-libopenblas-pthread-dev_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... Selecting previously unselected package libopenblas-dev:amd64. Preparing to unpack .../066-libopenblas-dev_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas-dev:amd64 (0.3.21+ds-4) ... Selecting previously unselected package libpython3.11:amd64. Preparing to unpack .../067-libpython3.11_3.11.2-6_amd64.deb ... Unpacking libpython3.11:amd64 (3.11.2-6) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../068-zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libpython3.11-dev:amd64. Preparing to unpack .../069-libpython3.11-dev_3.11.2-6_amd64.deb ... Unpacking libpython3.11-dev:amd64 (3.11.2-6) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../070-libpython3-dev_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.11.2-1+b1) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../071-libpython3-all-dev_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.11.2-1+b1) ... Selecting previously unselected package libxsimd-dev:amd64. Preparing to unpack .../072-libxsimd-dev_8.1.0-7_amd64.deb ... Unpacking libxsimd-dev:amd64 (8.1.0-7) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../073-libyaml-0-2_0.2.5-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../074-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../075-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../076-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../077-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../078-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../079-python3-typing-extensions_4.4.0-1_all.deb ... Unpacking python3-typing-extensions (4.4.0-1) ... Selecting previously unselected package python3-lazy-object-proxy. Preparing to unpack .../080-python3-lazy-object-proxy_1.9.0-1+b1_amd64.deb ... Unpacking python3-lazy-object-proxy (1.9.0-1+b1) ... Selecting previously unselected package python3-wrapt. Preparing to unpack .../081-python3-wrapt_1.14.1-2+b2_amd64.deb ... Unpacking python3-wrapt (1.14.1-2+b2) ... Selecting previously unselected package python3-astroid. Preparing to unpack .../082-python3-astroid_2.14.2-1_all.deb ... Unpacking python3-astroid (2.14.2-1) ... Selecting previously unselected package python3-toml. Preparing to unpack .../083-python3-toml_0.10.2-1_all.deb ... Unpacking python3-toml (0.10.2-1) ... Selecting previously unselected package python3-isort. Preparing to unpack .../084-python3-isort_5.6.4-1_all.deb ... Unpacking python3-isort (5.6.4-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../085-python3-more-itertools_8.10.0-2_all.deb ... Unpacking python3-more-itertools (8.10.0-2) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../086-python3-zipp_1.0.0-6_all.deb ... Unpacking python3-zipp (1.0.0-6) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../087-python3-importlib-metadata_4.12.0-1_all.deb ... Unpacking python3-importlib-metadata (4.12.0-1) ... Selecting previously unselected package python3-mypy-extensions. Preparing to unpack .../088-python3-mypy-extensions_0.4.3-4_all.deb ... Unpacking python3-mypy-extensions (0.4.3-4) ... Selecting previously unselected package python3-logilab-common. Preparing to unpack .../089-python3-logilab-common_1.9.8-1_all.deb ... Unpacking python3-logilab-common (1.9.8-1) ... Selecting previously unselected package python3-dill. Preparing to unpack .../090-python3-dill_0.3.6-1_all.deb ... Unpacking python3-dill (0.3.6-1) ... Selecting previously unselected package python3-mccabe. Preparing to unpack .../091-python3-mccabe_0.7.0-1_all.deb ... Unpacking python3-mccabe (0.7.0-1) ... Selecting previously unselected package python3-platformdirs. Preparing to unpack .../092-python3-platformdirs_2.6.0-1_all.deb ... Unpacking python3-platformdirs (2.6.0-1) ... Selecting previously unselected package python3-tomlkit. Preparing to unpack .../093-python3-tomlkit_0.11.7-1_all.deb ... Unpacking python3-tomlkit (0.11.7-1) ... Selecting previously unselected package pylint. Preparing to unpack .../094-pylint_2.16.2-2_all.deb ... Unpacking pylint (2.16.2-2) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../095-python3-appdirs_1.4.4-3_all.deb ... Unpacking python3-appdirs (1.4.4-3) ... Selecting previously unselected package python3-pbr. Preparing to unpack .../096-python3-pbr_5.10.0-2_all.deb ... Unpacking python3-pbr (5.10.0-2) ... Selecting previously unselected package python3-mock. Preparing to unpack .../097-python3-mock_4.0.3-4_all.deb ... Unpacking python3-mock (4.0.3-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../098-python3-dateutil_2.8.2-2_all.deb ... Unpacking python3-dateutil (2.8.2-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../099-python3-numpy_1%3a1.24.2-1_amd64.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../100-python3-tz_2022.7.1-4_all.deb ... Unpacking python3-tz (2022.7.1-4) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../101-python3-pandas-lib_1.5.3+dfsg-2_amd64.deb ... Unpacking python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../102-python3-pandas_1.5.3+dfsg-2_all.deb ... Unpacking python3-pandas (1.5.3+dfsg-2) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../103-python3-certifi_2022.9.24-1_all.deb ... Unpacking python3-certifi (2022.9.24-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../104-python3-charset-normalizer_3.0.1-2_all.deb ... Unpacking python3-charset-normalizer (3.0.1-2) ... Selecting previously unselected package python3-idna. Preparing to unpack .../105-python3-idna_3.3-1_all.deb ... Unpacking python3-idna (3.3-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../106-python3-urllib3_1.26.12-1_all.deb ... Unpacking python3-urllib3 (1.26.12-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../107-python3-chardet_5.1.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.1.0+dfsg-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../108-python3-requests_2.28.1+dfsg-1_all.deb ... Unpacking python3-requests (2.28.1+dfsg-1) ... Selecting previously unselected package python3-typechecks. Preparing to unpack .../109-python3-typechecks_0.1.0+ds-3_all.deb ... Unpacking python3-typechecks (0.1.0+ds-3) ... Selecting previously unselected package python3-datacache. Preparing to unpack .../110-python3-datacache_1.2.1-1_all.deb ... Unpacking python3-datacache (1.2.1-1) ... Selecting previously unselected package python3-gtfparse. Preparing to unpack .../111-python3-gtfparse_1.3.0+ds-1_all.deb ... Unpacking python3-gtfparse (1.3.0+ds-1) ... Selecting previously unselected package python3-memoized-property. Preparing to unpack .../112-python3-memoized-property_1.0.3-2_all.deb ... Unpacking python3-memoized-property (1.0.3-2) ... Selecting previously unselected package python3-nose. Preparing to unpack .../113-python3-nose_1.3.7-9_all.deb ... Unpacking python3-nose (1.3.7-9) ... Selecting previously unselected package python3-simplejson. Preparing to unpack .../114-python3-simplejson_3.18.3-1_amd64.deb ... Unpacking python3-simplejson (3.18.3-1) ... Selecting previously unselected package python3-serializable. Preparing to unpack .../115-python3-serializable_0.2.1+ds-2_all.deb ... Unpacking python3-serializable (0.2.1+ds-2) ... Selecting previously unselected package pyensembl. Preparing to unpack .../116-pyensembl_2.2.4+ds-1_all.deb ... Unpacking pyensembl (2.2.4+ds-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../117-python3-all_3.11.2-1+b1_amd64.deb ... Unpacking python3-all (3.11.2-1+b1) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../118-python3.11-dev_3.11.2-6_amd64.deb ... Unpacking python3.11-dev (3.11.2-6) ... Selecting previously unselected package python3-dev. Preparing to unpack .../119-python3-dev_3.11.2-1+b1_amd64.deb ... Unpacking python3-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../120-python3-all-dev_3.11.2-1+b1_amd64.deb ... Unpacking python3-all-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-gast. Preparing to unpack .../121-python3-gast_0.5.2-2_all.deb ... Unpacking python3-gast (0.5.2-2) ... Selecting previously unselected package python3-beniget. Preparing to unpack .../122-python3-beniget_0.4.1-3_all.deb ... Unpacking python3-beniget (0.4.1-3) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../123-python3-decorator_5.1.1-3_all.deb ... Unpacking python3-decorator (5.1.1-3) ... Selecting previously unselected package python3-h5py-serial. Preparing to unpack .../124-python3-h5py-serial_3.7.0-8_amd64.deb ... Unpacking python3-h5py-serial (3.7.0-8) ... Selecting previously unselected package python3-ply. Preparing to unpack .../125-python3-ply_3.11-5_all.deb ... Unpacking python3-ply (3.11-5) ... Selecting previously unselected package python3-pythran. Preparing to unpack .../126-python3-pythran_0.11.0+ds-7_amd64.deb ... Unpacking python3-pythran (0.11.0+ds-7) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../127-python3-scipy_1.10.1-2_amd64.deb ... Unpacking python3-scipy (1.10.1-2) ... Selecting previously unselected package python3-ujson:amd64. Preparing to unpack .../128-python3-ujson_5.7.0-1_amd64.deb ... Unpacking python3-ujson:amd64 (5.7.0-1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../129-python3-yaml_6.0-3+b2_amd64.deb ... Unpacking python3-yaml (6.0-3+b2) ... Selecting previously unselected package xpore. Preparing to unpack .../130-xpore_2.1-1_all.deb ... Unpacking xpore (2.1-1) ... Setting up media-types (10.0.0) ... Setting up libdouble-conversion3:amd64 (3.2.1-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libpsl5:amd64 (0.21.2-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up binutils-common:amd64 (2.40-2) ... Setting up libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Setting up linux-libc-dev:amd64 (6.1.66-1) ... Setting up libctf-nobfd0:amd64 (2.40-2) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up libaec0:amd64 (1.0.6-1+b1) ... Setting up libjansson4:amd64 (2.14-2) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.3-1) ... Setting up libmpfr6:amd64 (4.2.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up liblzf1:amd64 (3.6-3) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libatomic1:amd64 (12.2.0-14) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libubsan1:amd64 (12.2.0-14) ... Setting up libcrypt-dev:amd64 (1:4.4.33-2) ... Setting up libasan8:amd64 (12.2.0-14) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libtsan2:amd64 (12.2.0-14) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.40-2) ... Setting up libisl23:amd64 (0.25-1) ... Setting up libc-dev-bin (2.36-9+deb12u3) ... Setting up openssl (3.0.11-1~deb12u2) ... Setting up readline-common (8.2-1.3) ... Setting up libcc1-0:amd64 (12.2.0-14) ... Setting up liblsan0:amd64 (12.2.0-14) ... Setting up libsz2:amd64 (1.0.6-1+b1) ... Setting up libitm1:amd64 (12.2.0-14) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libctf0:amd64 (2.40-2) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-14) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libgprofng0:amd64 (2.40-2) ... Setting up libgcc-12-dev:amd64 (12.2.0-14) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up cpp (4:12.2.0-3) ... Setting up libcurl4:amd64 (7.88.1-10+deb12u4) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up binutils-x86-64-linux-gnu (2.40-2) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up binutils (2.40-2) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-14) ... Setting up libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libhdf5-hl-100:amd64 (1.10.8+repack1-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up gcc (4:12.2.0-3) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-9+deb12u3) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-ujson:amd64 (5.7.0-1) ... Setting up python3-platformdirs (2.6.0-1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-simplejson (3.18.3-1) ... Setting up python3-decorator (5.1.1-3) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-dill (0.3.6-1) ... Setting up python3-idna (3.3-1) ... Setting up python3-wrapt (1.14.1-2+b2) ... Setting up python3-typing-extensions (4.4.0-1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-isort (5.6.4-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mccabe (0.7.0-1) ... Setting up python3-lazy-object-proxy (1.9.0-1+b1) ... Setting up python3-tomlkit (0.11.7-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up g++-12 (12.2.0-14) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-typechecks (0.1.0+ds-3) ... Setting up python3-memoized-property (1.0.3-2) ... Setting up python3-pbr (5.10.0-2) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-mypy-extensions (0.4.3-4) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-serializable (0.2.1+ds-2) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-nose (1.3.7-9) ... Setting up python3-mock (4.0.3-4) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up g++ (4:12.2.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3-astroid (2.14.2-1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3-logilab-common (1.9.8-1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python3-h5py-serial (3.7.0-8) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up pylint (2.16.2-2) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-datacache (1.2.1-1) ... Setting up python3-gtfparse (1.3.0+ds-1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up pyensembl (2.2.4+ds-1) ... Setting up python3-scipy (1.10.1-2) ... Setting up xpore (2.1-1) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m53.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', '-y', 'install', 'xpore'] 0m53.4s INFO: Running scripts post_install 0m53.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_install_exceptions'] 0m53.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_install_exceptions'] 0m53.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 0m55.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 0m55.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpwkncf1hd to sid 0m55.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m55.8s INFO: Running scripts pre_distupgrade 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_distupgrade_exceptions'] 0m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_distupgrade_exceptions'] 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', 'update'] 1m0.5s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9623 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7082 kB] Fetched 16.9 MB in 3s (4864 kB/s) Reading package lists... 1m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', 'update'] 1m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', '-yf', 'dist-upgrade'] 2m32.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be REMOVED: libboost1.74-dev The following NEW packages will be installed: cpp-13 g++-13 gcc-13 gcc-13-base libboost1.83-dev libgcc-13-dev libhwasan0 libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libsframe1 libstdc++-13-dev libunistring5 netbase python3-h5py python3-zombie-imp python3.12 python3.12-dev python3.12-minimal The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils coreutils cpp cpp-12 dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils g++ g++-12 gcc gcc-12 gcc-12-base grep init-system-helpers libacl1 libaec0 libapt-pkg6.0 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libboost-dev libbrotli1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libcurl4 libdb5.3 libdebconfclient0 libdouble-conversion3 libexpat1 libexpat1-dev libext2fs2 libffi8 libgcc-12-dev libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgprofng0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libhogweed6 libidn2-0 libisl23 libitm1 libjs-sphinxdoc libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 liblzf1 liblzma5 libmd0 libmount1 libmpfr6 libncursesw6 libnettle8 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssh2-1 libssl3 libstdc++-12-dev libstdc++6 libsystemd0 libsz2 libtasn1-6 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libudev1 libuuid1 libxsimd-dev libxxhash0 libzstd1 linux-libc-dev login logsave mawk media-types mount ncurses-base ncurses-bin openssl passwd perl-base pyensembl pylint python3 python3-all python3-all-dev python3-appdirs python3-astroid python3-certifi python3-chardet python3-charset-normalizer python3-dateutil python3-decorator python3-dev python3-dill python3-distutils python3-h5py-serial python3-idna python3-lib2to3 python3-minimal python3-more-itertools python3-mypy-extensions python3-nose python3-numpy python3-pandas python3-pandas-lib python3-pbr python3-pkg-resources python3-platformdirs python3-ply python3-pythran python3-requests python3-scipy python3-setuptools python3-simplejson python3-tomlkit python3-typing-extensions python3-tz python3-ujson python3-urllib3 python3-wrapt python3-yaml python3.11 python3.11-dev python3.11-minimal readline-common sysvinit-utils tar tzdata usr-is-merged util-linux util-linux-extra xpore zlib1g zlib1g-dev 202 upgraded, 20 newly installed, 1 to remove and 0 not upgraded. Need to get 240 MB of archives. After this operation, 343 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13 [70.6 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.14 [88.3 kB] Get:3 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:4 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.3-2 [96.7 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-3 [66.9 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.36-2 [118 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.37-13 [1902 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.37-13 [46.6 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1 [10.7 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libtirpc-dev amd64 1.3.4+ds-1 [188 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5 [135 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5 [332 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5 [79.6 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5 [32.9 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.0-2+b1 [20.1 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.1.4-2 [2058 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.4+ds-1 [82.1 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-2 [89.7 kB] Get:20 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.6.8-1 [2219 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-13 [2753 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-13 [602 kB] Get:23 http://deb.debian.org/debian sid/main amd64 gcc-13-base amd64 13.2.0-9 [41.4 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 13.2.0-9 [57.7 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2 [557 kB] Get:26 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-2+b1 [2948 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 13.2.0-9 [694 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-2 [708 kB] Get:31 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.4.5-0.3 [240 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255.2-2 [361 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255.2-2 [123 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2 [26.4 kB] Get:35 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3 [918 kB] Get:36 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3 [87.5 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.7.7 [946 kB] Get:38 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-2 [814 kB] Get:39 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.2 [1562 kB] Get:40 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Get:41 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:42 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Get:43 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-3 [431 kB] Get:44 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.13+dfsg1-3 [616 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20231209-1 [135 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20231209-1 [341 kB] Get:47 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20231209-1 [430 kB] Get:48 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.36.0-10 [1602 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.3-2 [159 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4 [261 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-1+b1 [74.5 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.3-2 [190 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-1 [11.2 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.4-1 [16.9 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-1 [48.2 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.3-2 [116 kB] Get:57 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.39.3-2 [155 kB] Get:58 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.39.3-2 [1229 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libnettle8 amd64 3.9.1-2 [295 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.4-2 [23.5 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-4 [418 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.1-2 [421 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libhogweed6 amd64 3.9.1-2 [327 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.4-1+b1 [125 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3 [48.3 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libgnutls30 amd64 3.8.2-1 [1424 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.271 [9940 B] Get:68 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:69 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.83 [121 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.2-9.1 [65.5 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:72 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2 [277 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b1 [90.3 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.2-9.1 [49.9 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.2-9.1 [264 kB] Get:76 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.13+dfsg1-3 [972 kB] Get:77 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:78 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.4-2+b1 [47.1 kB] Get:80 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.7 [1362 kB] Get:81 http://deb.debian.org/debian sid/main amd64 usr-is-merged all 38 [5504 B] Get:82 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:83 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20231209-1 [267 kB] Get:84 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-5 [32.1 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 13.2.0-9 [131 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 13.2.0-9 [26.1 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 13.2.0-9 [9280 B] Get:88 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 13.2.0-9 [2560 kB] Get:89 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 13.2.0-9 [1102 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libisl23 amd64 0.26-3 [700 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.1-1 [713 kB] Get:92 http://deb.debian.org/debian sid/main amd64 g++-12 amd64 12.3.0-13 [10.8 MB] Get:93 http://deb.debian.org/debian sid/main amd64 gcc-12 amd64 12.3.0-13 [19.5 MB] Get:94 http://deb.debian.org/debian sid/main amd64 cpp-12 amd64 12.3.0-13 [9859 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 13.2.0-9 [1010 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libstdc++-12-dev amd64 12.3.0-13 [2069 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 13.2.0-9 [145 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 13.2.0-9 [804 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 13.2.0-9 [43.0 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libgcc-12-dev amd64 12.3.0-13 [2434 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 13.2.0-9 [2334 kB] Get:102 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.3.0-13 [41.0 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.41.50.20231227-1 [776 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.41.50.20231227-1 [76.7 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.41.50.20231227-1 [142 kB] Get:106 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.41.50.20231227-1 [2243 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.41.50.20231227-1 [488 kB] Get:108 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.41.50.20231227-1 [69.8 kB] Get:109 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.41.50.20231227-1 [2537 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libsframe1 amd64 2.41.50.20231227-1 [74.8 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 13.2.0-9 [1154 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libgcc-13-dev amd64 13.2.0-9 [2542 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libstdc++-13-dev amd64 13.2.0-9 [2206 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.83.0.2 [3552 B] Get:115 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-2 [10.6 MB] Get:116 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2+b1 [19.9 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libext2fs2 amd64 1.47.0-2+b1 [205 kB] Get:118 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.0-2+b1 [572 kB] Get:119 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.3-2 [143 kB] Get:120 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:121 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:122 http://deb.debian.org/debian sid/main amd64 python3.11-dev amd64 3.11.7-2 [508 kB] Get:123 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.7-2 [590 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libexpat1-dev amd64 2.5.0-2 [149 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.5.0-2 [99.0 kB] Get:126 http://deb.debian.org/debian sid/main amd64 libpython3.11-dev amd64 3.11.7-2 [4576 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libpython3.11 amd64 3.11.7-2 [1990 kB] Get:128 http://deb.debian.org/debian sid/main amd64 tzdata all 2023c-11 [252 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libdb5.3 amd64 5.3.28+dfsg2-4 [697 kB] Get:130 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.44.2-1 [882 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.39.3-2 [29.6 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.7-2 [1822 kB] Get:135 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.7-2 [2035 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.7-2 [816 kB] Get:137 http://deb.debian.org/debian sid/main amd64 python3-all-dev amd64 3.11.6-1 [1076 B] Get:138 http://deb.debian.org/debian sid/main amd64 python3-all amd64 3.11.6-1 [1060 B] Get:139 http://deb.debian.org/debian sid/main amd64 python3-pandas all 1.5.3+dfsg-10 [2886 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libpython3-all-dev amd64 3.11.6-1 [1072 B] Get:141 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.11.6-1 [9460 B] Get:142 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.11.6-1 [26.1 kB] Get:143 http://deb.debian.org/debian sid/main amd64 python3-astroid all 2.15.6-1 [213 kB] Get:144 http://deb.debian.org/debian sid/main amd64 pylint all 2.17.4-1 [343 kB] Get:145 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:146 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:147 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.11.5-1 [131 kB] Get:148 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 7.2.6-3 [149 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.1-2 [807 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.1-2 [1919 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libpython3.12 amd64 3.12.1-2 [2129 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libpython3.12-dev amd64 3.12.1-2 [4942 kB] Get:154 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.1-2 [2185 kB] Get:155 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.1-2 [646 kB] Get:156 http://deb.debian.org/debian sid/main amd64 python3.12-dev amd64 3.12.1-2 [506 kB] Get:157 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.8.2-3 [78.4 kB] Get:158 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get:159 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libopenblas-pthread-dev amd64 0.3.25+ds-1 [4679 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libopenblas0-pthread amd64 0.3.25+ds-1 [6640 kB] Get:162 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.24.2-2 [6299 kB] Get:163 http://deb.debian.org/debian sid/main amd64 python3-tz all 2023.3.post1-2 [30.9 kB] Get:164 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-10 [6809 kB] Get:165 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.7.1-2 [62.2 kB] Get:166 http://deb.debian.org/debian sid/main amd64 python3-wrapt amd64 1.15.0-2+b1 [49.3 kB] Get:167 http://deb.debian.org/debian sid/main amd64 python3-dill all 0.3.7-1 [81.1 kB] Get:168 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.1.0-1 [15.6 kB] Get:169 http://deb.debian.org/debian sid/main amd64 python3-tomlkit all 0.12.3-1 [41.5 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:171 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.2-9.1 [134 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.1-4 [31.8 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.1-5 [22.5 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-1 [35.5 kB] Get:175 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20231126-1 [136 kB] Get:176 http://deb.debian.org/debian sid/main amd64 cpp-13 amd64 13.2.0-9 [9924 kB] Get:177 http://deb.debian.org/debian sid/main amd64 gcc-13 amd64 13.2.0-9 [19.6 MB] Get:178 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:13.2.0-2 [1356 B] Get:179 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:13.2.0-2 [5224 B] 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http://deb.debian.org/debian sid/main amd64 libhdf5-hl-100 amd64 1.10.10+repack-3 [62.9 kB] Get:192 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4 [10.1 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libopenblas-dev amd64 0.3.25+ds-1 [49.6 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libopenblas0 amd64 0.3.25+ds-1 [36.8 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4 [19.4 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4 [56.7 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.0-2+b1 [24.8 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libxsimd-dev amd64 10.0.0-3 [101 kB] Get:199 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.1.4-2 [1426 kB] Get:200 http://deb.debian.org/debian sid/main amd64 python3-zombie-imp all 0.0.2-2 [11.7 kB] Get:201 http://deb.debian.org/debian sid/main amd64 python3-nose all 1.3.7-12 [130 kB] Get:202 http://deb.debian.org/debian sid/main amd64 pyensembl all 2.2.8+ds-1 [35.1 kB] Get:203 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:204 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get:205 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:206 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get:207 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:208 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.9.0-5 [1397 kB] Get:209 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.9.0-5 [14.3 kB] Get:210 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.3-2 [39.1 kB] Get:211 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.1.0-1 [59.1 kB] Get:212 http://deb.debian.org/debian sid/main amd64 python3-mypy-extensions all 1.0.0-1 [6064 B] Get:213 http://deb.debian.org/debian sid/main amd64 python3-pbr all 5.11.1-5 [55.4 kB] Get:214 http://deb.debian.org/debian sid/main amd64 python3-ply all 3.11-6 [63.7 kB] Get:215 http://deb.debian.org/debian sid/main amd64 python3-pythran amd64 0.14.0+ds-4 [441 kB] Get:216 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 1.26.18-1 [116 kB] Get:217 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get:218 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.10.1-6 [19.7 MB] Get:219 http://deb.debian.org/debian sid/main amd64 python3-simplejson amd64 3.19.2-1+b1 [69.4 kB] Get:220 http://deb.debian.org/debian sid/main amd64 python3-ujson amd64 5.9.0-1 [26.4 kB] Get:221 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.1-1+b1 [177 kB] Get:222 http://deb.debian.org/debian sid/main amd64 xpore all 2.1-2 [34.7 kB] debconf: delaying package configuration, since apt-utils is not installed 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36569 files and directories currently installed.) Preparing to unpack .../libstdc++6_13.2.0-9_amd64.deb ... Unpacking libstdc++6:amd64 (13.2.0-9) over (12.2.0-14) ... Setting up libstdc++6:amd64 (13.2.0-9) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36569 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.3-2_amd64.deb ... Unpacking libgcrypt20:amd64 (1.10.3-2) over (1.10.1-3) ... Setting up libgcrypt20:amd64 (1.10.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36569 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.5-0.3_amd64.deb ... Unpacking liblzma5:amd64 (5.4.5-0.3) over (5.4.1-0.2) ... Setting up liblzma5:amd64 (5.4.5-0.3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36563 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.42-4_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.42-4) over (10.42-1) ... Setting up libpcre2-8-0:amd64 (10.42-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36563 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-1+b1_amd64.deb ... Unpacking libselinux1:amd64 (3.5-1+b1) over (3.4-1+b6) ... Setting up libselinux1:amd64 (3.5-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36563 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.3-2_amd64.deb ... Unpacking libmount1:amd64 (2.39.3-2) over (2.38.1-5+b1) ... Setting up libmount1:amd64 (2.39.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36562 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a3.1.2-1_all.deb ... Unpacking libaudit-common (1:3.1.2-1) over (1:3.0.9-1) ... Setting up libaudit-common (1:3.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36562 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.4-1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.4-1) over (0.8.3-1+b3) ... Setting up libcap-ng0:amd64 (0.8.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36561 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.2-1_amd64.deb ... Unpacking libaudit1:amd64 (1:3.1.2-1) over (1:3.0.9-1) ... Setting up libaudit1:amd64 (1:3.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36561 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.39.3-2_amd64.deb ... Unpacking libsmartcols1:amd64 (2.39.3-2) over (2.38.1-5+b1) ... Setting up libsmartcols1:amd64 (2.39.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36560 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.39.3-2_amd64.deb ... Unpacking util-linux-extra (2.39.3-2) over (2.38.1-5+b1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/etc/init.d': Directory not empty Setting up util-linux-extra (2.39.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36564 files and directories currently installed.) Preparing to unpack .../util-linux_2.39.3-2_amd64.deb ... Unpacking util-linux (2.39.3-2) over (2.38.1-5+b1) ... Setting up util-linux (2.39.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36566 files and directories currently installed.) Preparing to unpack .../libnettle8_3.9.1-2_amd64.deb ... Unpacking libnettle8:amd64 (3.9.1-2) over (3.8.1-2) ... Setting up libnettle8:amd64 (3.9.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36566 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.4-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.4-2) over (3.4.4-1) ... Setting up libffi8:amd64 (3.4.4-2) ... (Reading database ... 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Setting up libpsl5:amd64 (0.21.2-1+b1) ... Setting up libtirpc-common (1.3.4+ds-1) ... Setting up libbrotli1:amd64 (1.1.0-2+b1) ... Setting up libsqlite3-0:amd64 (3.44.2-1) ... Setting up libpython3.12-minimal:amd64 (3.12.1-2) ... Setting up binutils-common:amd64 (2.41.50.20231227-1) ... Installing new version of config file /etc/gprofng.rc ... Setting up libnghttp2-14:amd64 (1.58.0-1) ... Setting up linux-libc-dev (6.6.8-1) ... Setting up libctf-nobfd0:amd64 (2.41.50.20231227-1) ... Setting up libgomp1:amd64 (13.2.0-9) ... Setting up libaec0:amd64 (1.1.2-1) ... Setting up libsframe1:amd64 (2.41.50.20231227-1) ... Setting up libkrb5support0:amd64 (1.20.1-5) ... Setting up gcc-12-base:amd64 (12.3.0-13) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-4) ... Setting up tzdata (2023c-11) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jan 1 03:56:52 UTC 2024. Universal Time is now: Mon Jan 1 03:56:52 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxsimd-dev:amd64 (10.0.0-3) ... Setting up libmpfr6:amd64 (4.2.1-1) ... Setting up liblzf1:amd64 (3.6-4) ... Setting up libquadmath0:amd64 (13.2.0-9) ... Setting up libatomic1:amd64 (13.2.0-9) ... Setting up libss2:amd64 (1.47.0-2+b1) ... Setting up libncursesw6:amd64 (6.4+20231209-1) ... Setting up libk5crypto3:amd64 (1.20.1-5) ... Setting up libjs-sphinxdoc (7.2.6-3) ... Setting up logsave (1.47.0-2+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-4) ... Setting up libgfortran5:amd64 (13.2.0-9) ... Setting up libubsan1:amd64 (13.2.0-9) ... Setting up mount (2.39.3-2) ... Setting up libhwasan0:amd64 (13.2.0-9) ... Setting up libcrypt-dev:amd64 (1:4.4.36-2) ... Setting up libasan8:amd64 (13.2.0-9) ... Setting up libssh2-1:amd64 (1.11.0-3) ... Setting up netbase (6.4) ... Setting up mawk (1.3.4.20231126-1) ... Setting up libkrb5-3:amd64 (1.20.1-5) ... Setting up libtsan2:amd64 (13.2.0-9) ... Setting up libbinutils:amd64 (2.41.50.20231227-1) ... Setting up libisl23:amd64 (0.26-3) ... Setting up libc-dev-bin (2.37-13) ... Setting up openssl (3.1.4-2) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.2-3) ... Setting up libcc1-0:amd64 (13.2.0-9) ... Setting up liblsan0:amd64 (13.2.0-9) ... Setting up libsz2:amd64 (1.1.2-1) ... Setting up libitm1:amd64 (13.2.0-9) ... Setting up libctf0:amd64 (2.41.50.20231227-1) ... Setting up python3.12-minimal (3.12.1-2) ... Setting up cpp-12 (12.3.0-13) ... Setting up libopenblas0-pthread:amd64 (0.3.25+ds-1) ... Setting up cpp-13 (13.2.0-9) ... Setting up libreadline8:amd64 (8.2-3) ... Setting up e2fsprogs (1.47.0-2+b1) ... Setting up libgprofng0:amd64 (2.41.50.20231227-1) ... Setting up libgcc-12-dev:amd64 (12.3.0-13) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-5) ... Setting up libgcc-13-dev:amd64 (13.2.0-9) ... Setting up libopenblas0:amd64 (0.3.25+ds-1) ... Setting up cpp (4:13.2.0-2) ... Setting up libcurl4:amd64 (8.5.0-2) ... Setting up binutils-x86-64-linux-gnu (2.41.50.20231227-1) ... Setting up libopenblas-pthread-dev:amd64 (0.3.25+ds-1) ... Setting up libtirpc3:amd64 (1.3.4+ds-1) ... Setting up binutils (2.41.50.20231227-1) ... Setting up libopenblas-dev:amd64 (0.3.25+ds-1) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1) ... Setting up gcc-12 (12.3.0-13) ... Setting up gcc-13 (13.2.0-9) ... Setting up libhdf5-103-1:amd64 (1.10.10+repack-3) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3) ... Setting up libpython3.12-stdlib:amd64 (3.12.1-2) ... Setting up libpython3.11-stdlib:amd64 (3.11.7-2) ... Setting up python3.12 (3.12.1-2) ... Setting up gcc (4:13.2.0-2) ... Setting up libnsl-dev:amd64 (1.3.0-3) ... Setting up libc6-dev:amd64 (2.37-13) ... Setting up libpython3.12:amd64 (3.12.1-2) ... Setting up libstdc++-13-dev:amd64 (13.2.0-9) ... Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up g++-13 (13.2.0-9) ... Setting up python3.11 (3.11.7-2) ... Setting up libboost1.83-dev:amd64 (1.83.0-2) ... Setting up libpython3.11:amd64 (3.11.7-2) ... Setting up libstdc++-12-dev:amd64 (12.3.0-13) ... Setting up python3 (3.11.6-1) ... Setting up python3-ujson:amd64 (5.9.0-1) ... Setting up python3-platformdirs (4.1.0-1) ... Setting up python3-tz (2023.3.post1-2) ... Setting up python3-simplejson (3.19.2-1+b1) ... Setting up python3-decorator (5.1.1-5) ... Setting up libexpat1-dev:amd64 (2.5.0-2) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-dill (0.3.7-1) ... Setting up python3-idna (3.3-2) ... Setting up python3-wrapt (1.15.0-2+b1) ... Setting up python3-typing-extensions (4.7.1-2) ... Setting up python3-urllib3 (1.26.18-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3) ... Setting up g++ (4:13.2.0-2) ... Setting up python3-dateutil (2.8.2-3) ... Setting up libboost-dev:amd64 (1.83.0.2) ... Setting up python3-tomlkit (0.12.3-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up g++-12 (12.3.0-13) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-more-itertools (10.1.0-1) ... Setting up python3-zombie-imp (0.0.2-2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-pbr (5.11.1-5) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-mypy-extensions (1.0.0-1) ... Setting up python3-ply (3.11-6) ... Setting up python3-all (3.11.6-1) ... Setting up python3-yaml (6.0.1-1+b1) ... Setting up libpython3.12-dev:amd64 (3.12.1-2) ... Setting up python3-nose (1.3.7-12) ... /usr/lib/python3/dist-packages/nose/config.py:142: SyntaxWarning: invalid escape sequence '\.' """nose configuration. /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:686: SyntaxWarning: invalid escape sequence '\S' _INDENT_RE = re.compile('^([ ]*)(?=\S)', re.MULTILINE) /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1021: SyntaxWarning: invalid escape sequence '\s' pat = re.compile('(^|.*:)\s*\w*("|\')') /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1430: SyntaxWarning: invalid escape sequence '\s' want = re.sub('(?m)^%s\s*?$' % re.escape(BLANKLINE_MARKER), /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1434: SyntaxWarning: invalid escape sequence '\s' got = re.sub('(?m)^\s*?$', '', got) /usr/lib/python3/dist-packages/nose/inspector.py:110: SyntaxWarning: invalid escape sequence '\ ' """Find lines in home that are inspectable. Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up libpython3.11-dev:amd64 (3.11.7-2) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3.12-dev (3.12.1-2) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-astroid (2.15.6-1) ... Setting up pylint (2.17.4-1) ... Setting up libpython3-dev:amd64 (3.11.6-1) ... Setting up python3.11-dev (3.11.7-2) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-10) ... Setting up python3-h5py-serial (3.9.0-5) ... Setting up python3-pandas (1.5.3+dfsg-10) ... Setting up libpython3-all-dev:amd64 (3.11.6-1) ... Setting up python3-dev (3.11.6-1) ... Setting up python3-h5py (3.9.0-5) ... Setting up pyensembl (2.2.8+ds-1) ... Setting up python3-all-dev (3.11.6-1) ... Setting up python3-pythran (0.14.0+ds-4) ... Setting up python3-scipy (1.10.1-6) ... Setting up xpore (2.1-2) ... Processing triggers for libc-bin (2.37-13) ... Processing triggers for debianutils (5.14) ... 2m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', '-yf', 'dist-upgrade'] 2m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m33.9s DUMP: d1666d37ae82b5e77ec9103919c9ddf4 - 2m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'show', '--no-all-versions', 'xpore'] 2m34.1s DUMP: Package: xpore Version: 2.1-2 Installed-Size: 160 Maintainer: Debian Med Packaging Team Architecture: all Depends: pyensembl, python3-h5py, python3-numpy, python3-pandas, python3-scipy, python3-ujson, python3-yaml, python3:any Suggests: xpore-doc Description-en: Nanopore analysis of differential RNA modifications RNA is transcribed from DNA, possibly spliced and exported to the cytoplasm - fine - but its bases can also be modified, edited, and not all such modifications are visible by Sanger sequencing methods and its derivatives. . The Nanopore measures potentials, and if the bases have a different shape then this is measured - not necessarily in an interpretable manner, something must be left for mass spectrometry, but one may be pointed to a difference. And maybe one can even statistically associate such differences with a molecular or clinical phenotype. Description-md5: 0493c5291452f14d39a3ce9aeea20ba2 Homepage: https://github.com/GoekeLab/xpore/ Section: science Priority: optional Filename: pool/main/x/xpore/xpore_2.1-2_all.deb Size: 34744 MD5sum: 5bd8c47a037fe2c4c8ab7e0ea8cc93dc SHA256: 8f56089b74752a027e9d7280e42584548f8c3d543b98c89f1e191c2d2799ba8e 2m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'show', '--no-all-versions', 'xpore'] 2m34.1s INFO: apt-cache knows about the following packages: xpore 2m34.1s INFO: Running scripts pre_install 2m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_database-server'] 2m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_database-server'] 2m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_exceptions'] 2m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_exceptions'] 2m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_extras'] 2m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_extras'] 2m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_foreign_architecture'] 2m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_foreign_architecture'] 2m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'policy'] 2m34.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'policy'] 2m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'policy', 'xpore'] 2m34.3s DUMP: xpore: Installed: 2.1-2 Candidate: 2.1-2 Version table: *** 2.1-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'policy', 'xpore'] 2m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', '-y', 'install', 'xpore'] 2m35.0s DUMP: Reading package lists... Building dependency tree... Reading state information... xpore is already the newest version (2.1-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', '-y', 'install', 'xpore'] 2m35.0s INFO: Running scripts post_install 2m35.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_install_exceptions'] 2m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_install_exceptions'] 2m35.0s INFO: Running scripts post_distupgrade 2m35.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_distupgrade_exceptions'] 2m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_distupgrade_exceptions'] 2m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_distupgrade_zz_backports'] 2m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_distupgrade_zz_backports'] 2m35.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 2m37.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 2m37.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 2m39.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 2m39.1s INFO: Running scripts pre_install 2m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_database-server'] 2m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_database-server'] 2m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_exceptions'] 2m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_exceptions'] 2m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_extras'] 2m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_extras'] 2m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_foreign_architecture'] 2m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_foreign_architecture'] 2m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'policy'] 2m39.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m39.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'policy'] 2m39.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'policy', 'xpore'] 2m39.2s DUMP: xpore: Installed: 2.1-2 Candidate: 2.1-2 Version table: *** 2.1-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m39.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-cache', 'policy', 'xpore'] 2m39.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', '-y', 'install', 'xpore=2.1-2'] 2m39.6s DUMP: Reading package lists... Building dependency tree... Reading state information... xpore is already the newest version (2.1-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', '-y', 'install', 'xpore=2.1-2'] 2m39.6s INFO: Running scripts post_install 2m39.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_install_exceptions'] 2m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_install_exceptions'] 2m40.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 2m42.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 2m42.7s INFO: /bin converted to /usr/bin by /usr merge 2m42.7s INFO: /lib converted to /usr/lib by /usr merge 2m42.8s INFO: /lib/init converted to /usr/lib/init by /usr merge 2m42.8s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 2m42.8s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 2m42.8s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 2m42.8s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 2m42.8s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 2m42.8s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 2m42.8s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 2m42.8s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 2m42.8s INFO: /lib64 converted to /usr/lib64 by /usr merge 2m42.8s INFO: /sbin converted to /usr/sbin by /usr merge 2m45.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', '-ac', '--ignore-obsolete'] 2m54.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', '-ac', '--ignore-obsolete'] 2m54.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m54.0s DUMP: 0.15.6 2m54.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m54.0s INFO: Running adequate version 0.15.6 now. 2m54.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'xpore'] 2m54.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'xpore'] 2m54.1s INFO: Running scripts pre_remove 2m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m54.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m54.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m57.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m57.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m57.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m57.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m57.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_remove_exceptions'] 2m57.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/pre_remove_exceptions'] 2m57.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m57.8s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.7.7 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed binutils binutils 2.41.50.20231227-1 install ok installed binutils-common:amd64 binutils-common 2.41.50.20231227-1 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.41.50.20231227-1 install ok installed bsdutils bsdutils 1:2.39.3-2 install ok installed ca-certificates ca-certificates 20230311 install ok installed coreutils coreutils 9.4-2+b1 install ok installed cpp cpp 4:13.2.0-2 install ok installed cpp-12 cpp-12 12.3.0-13 install ok installed cpp-13 cpp-13 13.2.0-9 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.83 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.14 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.2 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed g++ g++ 4:13.2.0-2 install ok installed g++-12 g++-12 12.3.0-13 install ok installed g++-13 g++-13 13.2.0-9 install ok installed gcc gcc 4:13.2.0-2 install ok installed gcc-12 gcc-12 12.3.0-13 install ok installed gcc-12-base:amd64 gcc-12-base 12.3.0-13 install ok installed gcc-13 gcc-13 13.2.0-9 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-9 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.11-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.1-4 install ok installed libaec0:amd64 libaec0 1.1.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.7 install ok installed libasan8:amd64 libasan8 13.2.0-9 install ok installed libatomic1:amd64 libatomic1 13.2.0-9 install ok installed libattr1:amd64 libattr1 1:2.5.1-5 install ok installed libaudit-common libaudit-common 1:3.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-1 install ok installed libbinutils:amd64 libbinutils 2.41.50.20231227-1 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-2 install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-2 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.37-13 install ok installed libc-dev-bin libc-dev-bin 2.37-13 install ok installed libc6:amd64 libc6 2.37-13 install ok installed libc6-dev:amd64 libc6-dev 2.37-13 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-1 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcc1-0:amd64 libcc1-0 13.2.0-9 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-2 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.41.50.20231227-1 install ok installed libctf0:amd64 libctf0 2.41.50.20231227-1 install ok installed libcurl4:amd64 libcurl4 8.5.0-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libdouble-conversion3:amd64 libdouble-conversion3 3.3.0-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-2 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.5.0-2 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.3.0-13 install ok installed libgcc-13-dev:amd64 libgcc-13-dev 13.2.0-9 install ok installed libgcc-s1:amd64 libgcc-s1 13.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgfortran5:amd64 libgfortran5 13.2.0-9 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.2-1 install ok installed libgomp1:amd64 libgomp1 13.2.0-9 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgprofng0:amd64 libgprofng0 2.41.50.20231227-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.10+repack-3 install ok installed libhdf5-hl-100:amd64 libhdf5-hl-100 1.10.10+repack-3 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libhwasan0:amd64 libhwasan0 13.2.0-9 install ok installed libidn2-0:amd64 libidn2-0 2.3.4-1+b1 install ok installed libisl23:amd64 libisl23 0.26-3 install ok installed libitm1:amd64 libitm1 13.2.0-9 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 7.2.6-3 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5 install ok installed liblsan0:amd64 liblsan0 13.2.0-9 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzf1:amd64 liblzf1 3.6-4 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-1 install ok installed libmount1:amd64 libmount1 2.39.3-2 install ok installed libmpc3:amd64 libmpc3 1.3.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.2.1-1 install ok installed libncursesw6:amd64 libncursesw6 6.4+20231209-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.58.0-1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-3 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.25+ds-1 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.25+ds-1 install ok installed libopenblas0:amd64 libopenblas0 0.3.25+ds-1 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.25+ds-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libpsl5:amd64 libpsl5 0.21.2-1+b1 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.11.6-1 install ok installed libpython3-dev:amd64 libpython3-dev 3.11.6-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.6-1 install ok installed libpython3.11:amd64 libpython3.11 3.11.7-2 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.7-2 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.7-2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.7-2 install ok installed libpython3.12:amd64 libpython3.12 3.12.1-2 install ok installed libpython3.12-dev:amd64 libpython3.12-dev 3.12.1-2 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.1-2 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.1-2 install ok installed libquadmath0:amd64 libquadmath0 13.2.0-9 install ok installed libreadline8:amd64 libreadline8 8.2-3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-4 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-2+b1 install ok installed libselinux1:amd64 libselinux1 3.5-1+b1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b1 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsframe1:amd64 libsframe1 2.41.50.20231227-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.44.2-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.11.0-3 install ok installed libssl3:amd64 libssl3 3.1.4-2 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.3.0-13 install ok installed libstdc++-13-dev:amd64 libstdc++-13-dev 13.2.0-9 install ok installed libstdc++6:amd64 libstdc++6 13.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 255.2-2 install ok installed libsz2:amd64 libsz2 1.1.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.4+20231209-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.4+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.4+ds-1 install ok installed libtsan2:amd64 libtsan2 13.2.0-9 install ok installed libubsan1:amd64 libubsan1 13.2.0-9 install ok installed libudev1:amd64 libudev1 255.2-2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-2 install ok installed libxsimd-dev:amd64 libxsimd-dev 10.0.0-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed linux-libc-dev linux-libc-dev 6.6.8-1 install ok installed login login 1:4.13+dfsg1-3 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20231126-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.39.3-2 install ok installed ncurses-base ncurses-base 6.4+20231209-1 install ok installed ncurses-bin ncurses-bin 6.4+20231209-1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.1.4-2 install ok installed passwd passwd 1:4.13+dfsg1-3 install ok installed perl-base perl-base 5.36.0-10 install ok installed pyensembl pyensembl 2.2.8+ds-1 install ok installed pylint pylint 2.17.4-1 install ok installed python3 python3 3.11.6-1 install ok installed python3-all python3-all 3.11.6-1 install ok installed python3-all-dev python3-all-dev 3.11.6-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-astroid python3-astroid 2.15.6-1 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-datacache python3-datacache 1.2.1-1 install ok installed python3-dateutil python3-dateutil 2.8.2-3 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-dev python3-dev 3.11.6-1 install ok installed python3-dill python3-dill 0.3.7-1 install ok installed python3-distutils python3-distutils 3.11.5-1 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-gtfparse python3-gtfparse 1.3.0+ds-1 install ok installed python3-h5py python3-h5py 3.9.0-5 install ok installed python3-h5py-serial python3-h5py-serial 3.9.0-5 install ok installed python3-idna python3-idna 3.3-2 install ok installed python3-importlib-metadata python3-importlib-metadata 4.12.0-1 install ok installed python3-isort python3-isort 5.6.4-1 install ok installed python3-lazy-object-proxy python3-lazy-object-proxy 1.9.0-1+b1 install ok installed python3-lib2to3 python3-lib2to3 3.11.5-1 install ok installed python3-logilab-common python3-logilab-common 1.9.8-1 install ok installed python3-mccabe python3-mccabe 0.7.0-1 install ok installed python3-memoized-property python3-memoized-property 1.0.3-2 install ok installed python3-minimal python3-minimal 3.11.6-1 install ok installed python3-mock python3-mock 4.0.3-4 install ok installed python3-more-itertools python3-more-itertools 10.1.0-1 install ok installed python3-mypy-extensions python3-mypy-extensions 1.0.0-1 install ok installed python3-nose python3-nose 1.3.7-12 install ok installed python3-numpy python3-numpy 1:1.24.2-2 install ok installed python3-pandas python3-pandas 1.5.3+dfsg-10 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.5.3+dfsg-10 install ok installed python3-pbr python3-pbr 5.11.1-5 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-platformdirs python3-platformdirs 4.1.0-1 install ok installed python3-ply python3-ply 3.11-6 install ok installed python3-pythran python3-pythran 0.14.0+ds-4 install ok installed python3-requests python3-requests 2.31.0+dfsg-1 install ok installed python3-scipy python3-scipy 1.10.1-6 install ok installed python3-serializable python3-serializable 0.2.1+ds-2 install ok installed python3-setuptools python3-setuptools 68.1.2-2 install ok installed python3-simplejson python3-simplejson 3.19.2-1+b1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-toml python3-toml 0.10.2-1 install ok installed python3-tomlkit python3-tomlkit 0.12.3-1 install ok installed python3-typechecks python3-typechecks 0.1.0+ds-3 install ok installed python3-typing-extensions python3-typing-extensions 4.7.1-2 install ok installed python3-tz python3-tz 2023.3.post1-2 install ok installed python3-ujson:amd64 python3-ujson 5.9.0-1 install ok installed python3-urllib3 python3-urllib3 1.26.18-1 install ok installed python3-wrapt python3-wrapt 1.15.0-2+b1 install ok installed python3-yaml python3-yaml 6.0.1-1+b1 install ok installed python3-zipp python3-zipp 1.0.0-6 install ok installed python3-zombie-imp python3-zombie-imp 0.0.2-2 install ok installed python3.11 python3.11 3.11.7-2 install ok installed python3.11-dev python3.11-dev 3.11.7-2 install ok installed python3.11-minimal python3.11-minimal 3.11.7-2 install ok installed python3.12 python3.12 3.12.1-2 install ok installed python3.12-dev python3.12-dev 3.12.1-2 install ok installed python3.12-minimal python3.12-minimal 3.12.1-2 install ok installed readline-common readline-common 8.2-3 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.08-5 install ok installed tar tar 1.35+dfsg-2 install ok installed tzdata tzdata 2023c-11 install ok installed usr-is-merged usr-is-merged 38 install ok installed util-linux util-linux 2.39.3-2 install ok installed util-linux-extra util-linux-extra 2.39.3-2 install ok installed xpore xpore 2.1-2 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg-3 2m57.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m57.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-13', 'g++-', 'g++-12', 'g++-13', 'gcc', 'gcc-12', 'gcc-13', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libdouble-conversion3:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwasan0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'openssl', 'pyensembl', 'pylint', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-astroid', 'python3-beniget', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-datacache', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-dill', 'python3-distutils', 'python3-gast', 'python3-gtfparse', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-importlib-metadata', 'python3-isort', 'python3-lazy-object-proxy', 'python3-lib2to3', 'python3-logilab-common', 'python3-mccabe', 'python3-memoized-property', 'python3-minimal', 'python3-mock', 'python3-more-itertools', 'python3-mypy-extensions', 'python3-nose', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pbr', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-pythran', 'python3-requests', 'python3-scipy', 'python3-serializable', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-toml', 'python3-tomlkit', 'python3-typechecks', 'python3-typing-extensions', 'python3-tz', 'python3-ujson:amd64', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3-zombie-imp', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64', 'xpore'] 3m6.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-12 cpp-13 g++ g++-12 g++-13 gcc gcc-12 gcc-13 libaec0 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libdouble-conversion3 libexpat1 libexpat1-dev libgcc-12-dev libgcc-13-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libhwasan0 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 liblzf1 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsframe1 libsqlite3-0 libssh2-1 libstdc++-12-dev libstdc++-13-dev libsz2 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev libyaml-0-2 linux-libc-dev media-types netbase openssl pyensembl pylint python3 python3-all python3-all-dev python3-appdirs python3-astroid python3-beniget python3-certifi python3-chardet python3-charset-normalizer python3-datacache python3-dateutil python3-decorator python3-dev python3-dill python3-distutils python3-gast python3-gtfparse python3-h5py python3-h5py-serial python3-idna python3-importlib-metadata python3-isort python3-lazy-object-proxy python3-lib2to3 python3-logilab-common python3-mccabe python3-memoized-property python3-minimal python3-mock python3-more-itertools python3-mypy-extensions python3-nose python3-numpy python3-pandas python3-pandas-lib python3-pbr python3-pkg-resources python3-platformdirs python3-ply python3-pythran python3-requests python3-scipy python3-serializable python3-setuptools python3-simplejson python3-six python3-toml python3-tomlkit python3-typechecks python3-typing-extensions python3-tz python3-ujson python3-urllib3 python3-wrapt python3-yaml python3-zipp python3-zombie-imp python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal readline-common rpcsvc-proto xpore zlib1g-dev 0 upgraded, 0 newly installed, 168 to remove and 0 not upgraded. After this operation, 1091 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39667 files and directories currently installed.) Removing xpore (2.1-2) ... Removing python3-scipy (1.10.1-6) ... Removing python3-pythran (0.14.0+ds-4) ... Removing g++ (4:13.2.0-2) ... Removing gcc (4:13.2.0-2) ... Removing g++-12 (12.3.0-13) ... Removing gcc-12 (12.3.0-13) ... Removing pyensembl (2.2.8+ds-1) ... Removing python3-datacache (1.2.1-1) ... Removing python3-requests (2.31.0+dfsg-1) ... Removing python3-certifi (2023.11.17-1) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cpp (4:13.2.0-2) ... Removing cpp-12 (12.3.0-13) ... Removing g++-13 (13.2.0-9) ... Removing python3-h5py (3.9.0-5) ... Removing python3-h5py-serial (3.9.0-5) ... Removing libhdf5-hl-100:amd64 (1.10.10+repack-3) ... Removing libhdf5-103-1:amd64 (1.10.10+repack-3) ... Removing libsz2:amd64 (1.1.2-1) ... Removing libaec0:amd64 (1.1.2-1) ... Removing libboost-dev:amd64 (1.83.0.2) ... Removing libboost1.83-dev:amd64 (1.83.0-2) ... Removing libstdc++-13-dev:amd64 (13.2.0-9) ... Removing libstdc++-12-dev:amd64 (12.3.0-13) ... Removing libgcc-12-dev:amd64 (12.3.0-13) ... Removing python3-gtfparse (1.3.0+ds-1) ... Removing python3-pandas (1.5.3+dfsg-10) ... Removing python3-pandas-lib:amd64 (1.5.3+dfsg-10) ... Removing python3-numpy (1:1.24.2-2) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing libcurl4:amd64 (8.5.0-2) ... Removing libbrotli1:amd64 (1.1.0-2+b1) ... Removing python3-all-dev (3.11.6-1) ... Removing python3.12-dev (3.12.1-2) ... Removing libpython3-all-dev:amd64 (3.11.6-1) ... Removing libpython3.12-dev:amd64 (3.12.1-2) ... Removing python3-dev (3.11.6-1) ... Removing python3.11-dev (3.11.7-2) ... Removing python3-ujson:amd64 (5.9.0-1) ... Removing libdouble-conversion3:amd64 (3.3.0-1) ... Removing python3-all (3.11.6-1) ... Removing python3.12 (3.12.1-2) ... Removing python3.12-minimal (3.12.1-2) ... Removing libpython3.12:amd64 (3.12.1-2) ... Removing libopenblas-dev:amd64 (0.3.25+ds-1) ... Removing libopenblas-pthread-dev:amd64 (0.3.25+ds-1) ... Removing libopenblas0:amd64 (0.3.25+ds-1) ... Removing libopenblas0-pthread:amd64 (0.3.25+ds-1) ... Removing libgfortran5:amd64 (13.2.0-9) ... Removing libpython3.12-stdlib:amd64 (3.12.1-2) ... Removing libjs-sphinxdoc (7.2.6-3) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Removing liblzf1:amd64 (3.6-4) ... Removing libnghttp2-14:amd64 (1.58.0-1) ... Removing libpsl5:amd64 (0.21.2-1+b1) ... Removing libpython3-dev:amd64 (3.11.6-1) ... Removing python3-serializable (0.2.1+ds-2) ... Removing python3-simplejson (3.19.2-1+b1) ... Removing python3-mock (4.0.3-4) ... Removing python3-pbr (5.11.1-5) ... Removing pylint (2.17.4-1) ... Removing python3-yaml (6.0.1-1+b1) ... Removing python3-urllib3 (1.26.18-1) ... Removing libpython3.12-minimal:amd64 (3.12.1-2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-4) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-4) ... Removing libssh2-1:amd64 (1.11.0-3) ... Removing libxsimd-dev:amd64 (10.0.0-3) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing openssl (3.1.4-2) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-astroid (2.15.6-1) ... Removing python3-beniget (0.4.1-3) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-dateutil (2.8.2-3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-dill (0.3.7-1) ... Removing python3-gast (0.5.2-2) ... Removing python3-idna (3.3-2) ... Removing python3-logilab-common (1.9.8-1) ... Removing python3-importlib-metadata (4.12.0-1) ... Removing python3-isort (5.6.4-1) ... Removing python3-lazy-object-proxy (1.9.0-1+b1) ... Removing python3-mccabe (0.7.0-1) ... Removing python3-memoized-property (1.0.3-2) ... Removing python3-zipp (1.0.0-6) ... Removing python3-more-itertools (10.1.0-1) ... Removing python3-mypy-extensions (1.0.0-1) ... Removing python3-nose (1.3.7-12) ... Removing python3-platformdirs (4.1.0-1) ... Removing python3-ply (3.11-6) ... Removing python3-toml (0.10.2-1) ... Removing python3-tomlkit (0.12.3-1) ... Removing python3-typechecks (0.1.0+ds-3) ... Removing python3-typing-extensions (4.7.1-2) ... Removing python3-tz (2023.3.post1-2) ... Removing python3-wrapt (1.15.0-2+b1) ... Removing python3-zombie-imp (0.0.2-2) ... Removing gcc-13 (13.2.0-9) ... Removing binutils (2.41.50.20231227-1) ... Removing binutils-x86-64-linux-gnu (2.41.50.20231227-1) ... Removing libgprofng0:amd64 (2.41.50.20231227-1) ... Removing libctf0:amd64 (2.41.50.20231227-1) ... Removing libbinutils:amd64 (2.41.50.20231227-1) ... Removing binutils-common:amd64 (2.41.50.20231227-1) ... Removing cpp-13 (13.2.0-9) ... Removing libgcc-13-dev:amd64 (13.2.0-9) ... Removing libasan8:amd64 (13.2.0-9) ... Removing libatomic1:amd64 (13.2.0-9) ... Removing libpython3.11-dev:amd64 (3.11.7-2) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg-3) ... Removing libexpat1-dev:amd64 (2.5.0-2) ... Removing libc6-dev:amd64 (2.37-13) ... Removing libc-dev-bin (2.37-13) ... Removing libcc1-0:amd64 (13.2.0-9) ... Removing libcrypt-dev:amd64 (1:4.4.36-2) ... Removing libctf-nobfd0:amd64 (2.41.50.20231227-1) ... Removing libgomp1:amd64 (13.2.0-9) ... Removing libpython3.11:amd64 (3.11.7-2) ... Removing libhwasan0:amd64 (13.2.0-9) ... Removing libisl23:amd64 (0.26-3) ... Removing libitm1:amd64 (13.2.0-9) ... Removing libjansson4:amd64 (2.14-2) ... Removing liblsan0:amd64 (13.2.0-9) ... Removing libmpc3:amd64 (1.3.1-1) ... Removing libmpfr6:amd64 (4.2.1-1) ... Removing libnsl-dev:amd64 (1.3.0-3) ... Removing python3-setuptools (68.1.2-2) ... Removing python3-distutils (3.11.5-1) ... Removing python3-six (1.16.0-4) ... Removing libquadmath0:amd64 (13.2.0-9) ... Removing libsframe1:amd64 (2.41.50.20231227-1) ... Removing libtirpc-dev:amd64 (1.3.4+ds-1) ... Removing libtsan2:amd64 (13.2.0-9) ... Removing libubsan1:amd64 (13.2.0-9) ... Removing linux-libc-dev (6.6.8-1) ... Removing python3-lib2to3 (3.11.5-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing rpcsvc-proto (1.4.3-1) ... Removing python3 (3.11.6-1) ... Removing libpython3-stdlib:amd64 (3.11.6-1) ... Removing python3.11 (3.11.7-2) ... Removing python3-minimal (3.11.6-1) ... Removing python3.11-minimal (3.11.7-2) ... Removing libexpat1:amd64 (2.5.0-2) ... Removing libpython3.11-stdlib:amd64 (3.11.7-2) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20231209-1) ... Removing libnsl2:amd64 (1.3.0-3) ... Removing libpython3.11-minimal:amd64 (3.11.7-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-3) ... Removing libsqlite3-0:amd64 (3.44.2-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-3) ... Removing libtirpc3:amd64 (1.3.4+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-5) ... Removing libkrb5-3:amd64 (1.20.1-5) ... Removing libk5crypto3:amd64 (1.20.1-5) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-5) ... Removing libtirpc-common (1.3.4+ds-1) ... Processing triggers for libc-bin (2.37-13) ... 3m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-13', 'g++-', 'g++-12', 'g++-13', 'gcc', 'gcc-12', 'gcc-13', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libdouble-conversion3:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwasan0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'openssl', 'pyensembl', 'pylint', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-astroid', 'python3-beniget', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-datacache', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-dill', 'python3-distutils', 'python3-gast', 'python3-gtfparse', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-importlib-metadata', 'python3-isort', 'python3-lazy-object-proxy', 'python3-lib2to3', 'python3-logilab-common', 'python3-mccabe', 'python3-memoized-property', 'python3-minimal', 'python3-mock', 'python3-more-itertools', 'python3-mypy-extensions', 'python3-nose', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pbr', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-pythran', 'python3-requests', 'python3-scipy', 'python3-serializable', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-toml', 'python3-tomlkit', 'python3-typechecks', 'python3-typing-extensions', 'python3-tz', 'python3-ujson:amd64', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3-zombie-imp', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64', 'xpore'] 3m6.2s INFO: Running scripts post_remove 3m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_remove_exceptions'] 3m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_remove_exceptions'] 3m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-13', 'g++', 'g++-12', 'g++-13', 'gcc', 'gcc-12', 'gcc-13', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libdouble-conversion3:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwasan0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'openssl', 'pyensembl', 'pylint', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-astroid', 'python3-beniget', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-datacache', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-dill', 'python3-distutils', 'python3-gast', 'python3-gtfparse', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-importlib-metadata', 'python3-isort', 'python3-lazy-object-proxy', 'python3-lib2to3', 'python3-logilab-common', 'python3-mccabe', 'python3-memoized-property', 'python3-minimal', 'python3-mock', 'python3-more-itertools', 'python3-mypy-extensions', 'python3-nose', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pbr', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-pythran', 'python3-requests', 'python3-scipy', 'python3-serializable', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-toml', 'python3-tomlkit', 'python3-typechecks', 'python3-typing-extensions', 'python3-tz', 'python3-ujson:amd64', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3-zombie-imp', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 3m6.3s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 5340 files and directories currently installed.) Purging configuration files for binutils-common:amd64 (2.41.50.20231227-1) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed Purging configuration files for ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-12 which isn't installed dpkg: warning: ignoring request to remove cpp-13 which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove g++-13 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove gcc-13 which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-2) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdouble-conversion3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-13-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-5) ... dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.7-2) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.12 which isn't installed dpkg: warning: ignoring request to remove libpython3.12-dev which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.1-2) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsframe1 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-13-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.1.4-2) ... dpkg: warning: ignoring request to remove pyensembl which isn't installed dpkg: warning: ignoring request to remove pylint which isn't installed Purging configuration files for python3 (3.11.6-1) ... dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-astroid which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-datacache which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-dill which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-gtfparse which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-importlib-metadata which isn't installed dpkg: warning: ignoring request to remove python3-isort which isn't installed dpkg: warning: ignoring request to remove python3-lazy-object-proxy which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-logilab-common which isn't installed dpkg: warning: ignoring request to remove python3-mccabe which isn't installed dpkg: warning: ignoring request to remove python3-memoized-property which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mock which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mypy-extensions which isn't installed dpkg: warning: ignoring request to remove python3-nose which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed Purging configuration files for python3-pbr (5.11.1-5) ... dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-platformdirs which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-serializable which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-simplejson which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-toml which isn't installed dpkg: warning: ignoring request to remove python3-tomlkit which isn't installed dpkg: warning: ignoring request to remove python3-typechecks which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ujson which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3-zombie-imp which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.7-2) ... dpkg: warning: ignoring request to remove python3.12 which isn't installed dpkg: warning: ignoring request to remove python3.12-dev which isn't installed Purging configuration files for python3.12-minimal (3.12.1-2) ... Purging configuration files for readline-common (8.2-3) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 3m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-13', 'g++', 'g++-12', 'g++-13', 'gcc', 'gcc-12', 'gcc-13', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libdouble-conversion3:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwasan0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'openssl', 'pyensembl', 'pylint', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-astroid', 'python3-beniget', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-datacache', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-dill', 'python3-distutils', 'python3-gast', 'python3-gtfparse', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-importlib-metadata', 'python3-isort', 'python3-lazy-object-proxy', 'python3-lib2to3', 'python3-logilab-common', 'python3-mccabe', 'python3-memoized-property', 'python3-minimal', 'python3-mock', 'python3-more-itertools', 'python3-mypy-extensions', 'python3-nose', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pbr', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-pythran', 'python3-requests', 'python3-scipy', 'python3-serializable', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-toml', 'python3-tomlkit', 'python3-typechecks', 'python3-typing-extensions', 'python3-tz', 'python3-ujson:amd64', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3-zombie-imp', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 3m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg', '--purge', 'xpore'] 3m6.3s DUMP: dpkg: warning: ignoring request to remove xpore which isn't installed 3m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg', '--purge', 'xpore'] 3m6.3s INFO: Running scripts post_purge 3m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_purge_exceptions'] 3m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_purge_exceptions'] 3m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg', '--purge', '--pending'] 3m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg', '--purge', '--pending'] 3m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg', '--remove', '--pending'] 3m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg', '--remove', '--pending'] 3m6.3s INFO: Running scripts post_test 3m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_test_exceptions'] 3m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'tmp/scripts/post_test_exceptions'] 3m6.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 3m6.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 3m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg-divert', '--list'] 3m6.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 3m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'dpkg-divert', '--list'] 3m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', 'clean'] 3m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd', 'apt-get', 'clean'] 3m6.8s DEBUG: Recording chroot state 3m7.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/shm'] 3m7.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/shm'] 3m7.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/console'] 3m7.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/console'] 3m7.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/ptmx'] 3m7.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/ptmx'] 3m7.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/pts'] 3m7.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/dev/pts'] 3m7.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/proc'] 3m7.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd/proc'] 3m7.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 3m7.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwkncf1hd'] 3m7.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpwkncf1hd 3m8.0s INFO: PASS: Upgrading between Debian distributions. 3m8.0s INFO: PASS: All tests. 3m8.0s INFO: piuparts run ends. ret=0 End: 2024-01-01 03:57:59 GMT