Start: 2021-08-16 14:55:01 GMT [testing] Package: yaha Version: 0.1.83-2 Installed-Size: 109 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4) Description: find split-read mappings on single-end queries Homepage: https://github.com/GregoryFaust/yaha Description-md5: 93435da37e2ea580b6a7d1c2a5ccbafa Section: science Priority: optional Filename: pool/main/y/yaha/yaha_0.1.83-2_amd64.deb Size: 43620 MD5sum: 00b6fc4927a258a9a55aa51dbf7f0f8e SHA256: e24ac5c55604a33a8405094343cdfc0ef3c97906121d298d1a48d9b896eb9ba3 [sid] Package: yaha Version: 0.1.83-3 Installed-Size: 109 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4) Description: find split-read mappings on single-end queries Homepage: https://github.com/GregoryFaust/yaha Description-md5: 93435da37e2ea580b6a7d1c2a5ccbafa Section: science Priority: optional Filename: pool/main/y/yaha/yaha_0.1.83-3_amd64.deb Size: 44008 MD5sum: be8ec9f817eeae35c41af3f209865117 SHA256: e1ba4dbecff8f1bd7a15be45def6d33ba8ea72c83cf5ef61a505f123ffd83562 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt yaha=0.1.83-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.3 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt yaha=0.1.83-3 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmppg5qm35y 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmppg5qm35y 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/pts'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/pts'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/ptmx'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/ptmx'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmppg5qm35y/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', 'update'] 0m2.3s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [113 kB] Fetched 113 kB in 0s (669 kB/s) Reading package lists... 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', 'update'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s DUMP: e5893bf5d89f83f99f0dc7018e11583b - 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s INFO: Running scripts post_setup 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_setup_dummy_users'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_setup_dummy_users'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+b3 install ok installed bsdutils bsdutils 1:2.36.1-8 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13 install ok installed libc6:amd64 libc6 2.31-13 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.36.1-8 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9 install ok installed libpam-runtime libpam-runtime 1.4.0-9 install ok installed libpam0g:amd64 libpam0g 1.4.0-9 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1k-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-6 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2 install ok installed libtirpc-common libtirpc-common 1.3.1-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1 install ok installed libudev1:amd64 libudev1 247.3-6 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8 install ok installed ncurses-base ncurses-base 6.2+20201114-2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1 install ok installed util-linux util-linux 2.36.1-8 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m4.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m4.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m4.9s INFO: Running scripts is_testable 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/is_testable_uninstallable'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/is_testable_uninstallable'] 0m4.9s INFO: Running scripts pre_test 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_test_exceptions'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_test_exceptions'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_test_root_password'] 0m4.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_test_root_password'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'show', '--no-all-versions', 'yaha'] 0m5.1s DUMP: Package: yaha Version: 0.1.83-2 Installed-Size: 109 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4) Description-en: find split-read mappings on single-end queries yaha is an open source, flexible, sensitive and accurate DNA aligner designed for single-end reads. It supports three major modes of operation: * The default ??Optimal Query Coverage?? (-OQC) mode reports the best set of alignments that cover the length of each query. * Using ??Filter By Similarity?? (-FBS), along with the best set of alignments, yaha will also output alignments that are highly similar to an alignment in the best set. * Finally, yaha can output all the alignments found for each query. The -OQC and -FBS modes are specifically tuned to form split read mappings that can be used to accurately identify structural variation events (deletions, duplications, insertions or inversions) between the subject query and the reference genome. Description-md5: 93435da37e2ea580b6a7d1c2a5ccbafa Homepage: https://github.com/GregoryFaust/yaha Section: science Priority: optional Filename: pool/main/y/yaha/yaha_0.1.83-2_amd64.deb Size: 43620 MD5sum: 00b6fc4927a258a9a55aa51dbf7f0f8e SHA256: e24ac5c55604a33a8405094343cdfc0ef3c97906121d298d1a48d9b896eb9ba3 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'show', '--no-all-versions', 'yaha'] 0m5.1s INFO: apt-cache knows about the following packages: yaha 0m5.1s INFO: Running scripts pre_install 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'policy'] 0m5.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.0,o=Debian,a=stable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'policy'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'policy', 'yaha'] 0m5.3s DUMP: yaha: Installed: (none) Candidate: 0.1.83-2 Version table: 0.1.83-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'policy', 'yaha'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', '-y', 'install', 'yaha'] 0m5.8s DUMP: Reading package lists... Building dependency tree... The following NEW packages will be installed: yaha 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 43.6 kB of archives. After this operation, 112 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 yaha amd64 0.1.83-2 [43.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 43.6 kB in 0s (2062 kB/s) Selecting previously unselected package yaha. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6655 files and directories currently installed.) Preparing to unpack .../yaha_0.1.83-2_amd64.deb ... Unpacking yaha (0.1.83-2) ... Setting up yaha (0.1.83-2) ... 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', '-y', 'install', 'yaha'] 0m5.8s INFO: Running scripts post_install 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_install_exceptions'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_install_exceptions'] 0m5.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m6.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m6.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmppg5qm35y to sid 0m6.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m6.2s INFO: Running scripts pre_distupgrade 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', 'update'] 0m9.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8649 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6513 kB] Fetched 15.3 MB in 3s (5475 kB/s) Reading package lists... 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', 'update'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', '-yf', 'dist-upgrade'] 0m12.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt bash dash gcc-9-base libapt-pkg6.0 libcrypt1 libidn2-0 libsystemd0 libudev1 perl-base yaha 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6648 kB of archives. After this operation, 69.6 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.1-3+b1 [1417 kB] Get:2 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.11+git20210120+802ebd4-1 [116 kB] Get:3 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.32.1-5 [1629 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 247.9-1 [376 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 247.9-1 [167 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.3.8 [1020 kB] Get:7 http://deb.debian.org/debian sid/main amd64 apt amd64 2.3.8 [1498 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.18-5 [87.6 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.2-2 [95.3 kB] Get:10 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.4.0-1 [199 kB] Get:11 http://deb.debian.org/debian sid/main amd64 yaha amd64 0.1.83-3 [44.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6648 kB in 0s (61.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Preparing to unpack .../bash_5.1-3+b1_amd64.deb ... Unpacking bash (5.1-3+b1) over (5.1-2+b3) ... Setting up bash (5.1-3+b1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210120+802ebd4-1_amd64.deb ... Unpacking dash (0.5.11+git20210120+802ebd4-1) over (0.5.11+git20200708+dd9ef66-5) ... Setting up dash (0.5.11+git20210120+802ebd4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Preparing to unpack .../perl-base_5.32.1-5_amd64.deb ... Unpacking perl-base (5.32.1-5) over (5.32.1-4) ... Setting up perl-base (5.32.1-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Preparing to unpack .../libsystemd0_247.9-1_amd64.deb ... Unpacking libsystemd0:amd64 (247.9-1) over (247.3-6) ... Setting up libsystemd0:amd64 (247.9-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Preparing to unpack .../libudev1_247.9-1_amd64.deb ... Unpacking libudev1:amd64 (247.9-1) over (247.3-6) ... Setting up libudev1:amd64 (247.9-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.3.8_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.3.8) over (2.2.4) ... Setting up libapt-pkg6.0:amd64 (2.3.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Preparing to unpack .../archives/apt_2.3.8_amd64.deb ... Unpacking apt (2.3.8) over (2.2.4) ... Setting up apt (2.3.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.18-5_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.18-5) over (1:4.4.18-4) ... Setting up libcrypt1:amd64 (1:4.4.18-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.2-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.2-2) over (2.3.0-5) ... Setting up libidn2-0:amd64 (2.3.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Preparing to unpack .../gcc-9-base_9.4.0-1_amd64.deb ... Unpacking gcc-9-base:amd64 (9.4.0-1) over (9.3.0-22) ... Preparing to unpack .../yaha_0.1.83-3_amd64.deb ... Unpacking yaha (0.1.83-3) over (0.1.83-2) ... Setting up yaha (0.1.83-3) ... Setting up gcc-9-base:amd64 (9.4.0-1) ... Processing triggers for libc-bin (2.31-13) ... 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', '-yf', 'dist-upgrade'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.0s DUMP: cd1e5ee313cba9ac011f0184876c341e - 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'show', '--no-all-versions', 'yaha'] 0m14.2s DUMP: Package: yaha Version: 0.1.83-3 Installed-Size: 109 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4) Description-en: find split-read mappings on single-end queries yaha is an open source, flexible, sensitive and accurate DNA aligner designed for single-end reads. It supports three major modes of operation: * The default ??Optimal Query Coverage?? (-OQC) mode reports the best set of alignments that cover the length of each query. * Using ??Filter By Similarity?? (-FBS), along with the best set of alignments, yaha will also output alignments that are highly similar to an alignment in the best set. * Finally, yaha can output all the alignments found for each query. The -OQC and -FBS modes are specifically tuned to form split read mappings that can be used to accurately identify structural variation events (deletions, duplications, insertions or inversions) between the subject query and the reference genome. Description-md5: 93435da37e2ea580b6a7d1c2a5ccbafa Homepage: https://github.com/GregoryFaust/yaha Section: science Priority: optional Filename: pool/main/y/yaha/yaha_0.1.83-3_amd64.deb Size: 44008 MD5sum: be8ec9f817eeae35c41af3f209865117 SHA256: e1ba4dbecff8f1bd7a15be45def6d33ba8ea72c83cf5ef61a505f123ffd83562 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'show', '--no-all-versions', 'yaha'] 0m14.2s INFO: apt-cache knows about the following packages: yaha 0m14.2s INFO: Running scripts pre_install 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_database-server'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_database-server'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_exceptions'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_exceptions'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_extras'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_extras'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'policy'] 0m14.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'policy'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'policy', 'yaha'] 0m14.4s DUMP: yaha: Installed: 0.1.83-3 Candidate: 0.1.83-3 Version table: *** 0.1.83-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'policy', 'yaha'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', '-y', 'install', 'yaha'] 0m14.8s DUMP: Reading package lists... Building dependency tree... Reading state information... yaha is already the newest version (0.1.83-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', '-y', 'install', 'yaha'] 0m14.8s INFO: Running scripts post_install 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_install_exceptions'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_install_exceptions'] 0m14.9s INFO: Running scripts post_distupgrade 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_distupgrade_exceptions'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_distupgrade_exceptions'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_distupgrade_zz_backports'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_distupgrade_zz_backports'] 0m14.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m15.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m15.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m15.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m15.7s INFO: Running scripts pre_install 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_database-server'] 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_database-server'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_exceptions'] 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_exceptions'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_extras'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_extras'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'policy'] 0m15.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'policy'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'policy', 'yaha'] 0m15.9s DUMP: yaha: Installed: 0.1.83-3 Candidate: 0.1.83-3 Version table: *** 0.1.83-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-cache', 'policy', 'yaha'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', '-y', 'install', 'yaha=0.1.83-3'] 0m16.3s DUMP: Reading package lists... Building dependency tree... Reading state information... yaha is already the newest version (0.1.83-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', '-y', 'install', 'yaha=0.1.83-3'] 0m16.3s INFO: Running scripts post_install 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_install_exceptions'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_install_exceptions'] 0m16.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m16.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m17.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', '-ac', '--ignore-obsolete'] 0m18.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', '-ac', '--ignore-obsolete'] 0m18.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.0s DUMP: 0.15.2 0m18.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.0s INFO: Running adequate version 0.15.2 now. 0m18.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'yaha'] 0m18.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'yaha'] 0m18.2s INFO: Running scripts pre_remove 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_remove_exceptions'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/pre_remove_exceptions'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.0s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.8 install ok installed base-files base-files 11.1 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-3+b1 install ok installed bsdutils bsdutils 1:2.36.1-8 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20210120+802ebd4-1 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.4.0-1 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.8 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13 install ok installed libc6:amd64 libc6 2.31-13 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.36.1-8 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9 install ok installed libpam-runtime libpam-runtime 1.4.0-9 install ok installed libpam0g:amd64 libpam0g 1.4.0-9 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1k-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.9-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2 install ok installed libtirpc-common libtirpc-common 1.3.1-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1 install ok installed libudev1:amd64 libudev1 247.9-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8 install ok installed ncurses-base ncurses-base 6.2+20201114-2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-5 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1 install ok installed util-linux util-linux 2.36.1-8 install ok installed yaha yaha 0.1.83-3 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', 'remove', 'yaha'] 0m19.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: yaha 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 112 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6660 files and directories currently installed.) Removing yaha (0.1.83-3) ... 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', 'remove', 'yaha'] 0m19.6s INFO: Running scripts post_remove 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_remove_exceptions'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_remove_exceptions'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'dpkg', '--purge', 'yaha'] 0m19.7s DUMP: dpkg: warning: ignoring request to remove yaha which isn't installed 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'dpkg', '--purge', 'yaha'] 0m19.7s INFO: Running scripts post_purge 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_purge_exceptions'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_purge_exceptions'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'dpkg', '--purge', '--pending'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'dpkg', '--purge', '--pending'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'dpkg', '--remove', '--pending'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'dpkg', '--remove', '--pending'] 0m19.7s INFO: Running scripts post_test 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_test_exceptions'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'tmp/scripts/post_test_exceptions'] 0m19.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m20.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'dpkg-divert', '--list'] 0m20.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'dpkg-divert', '--list'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', 'clean'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppg5qm35y', 'apt-get', 'clean'] 0m20.2s DEBUG: Recording chroot state 0m21.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/shm'] 0m21.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/shm'] 0m21.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/console'] 0m21.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/console'] 0m21.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/ptmx'] 0m21.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/ptmx'] 0m21.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/pts'] 0m21.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/dev/pts'] 0m21.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/proc'] 0m21.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppg5qm35y/proc'] 0m21.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m21.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppg5qm35y'] 0m21.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmppg5qm35y 0m21.6s INFO: PASS: Upgrading between Debian distributions. 0m21.6s INFO: PASS: All tests. 0m21.6s INFO: piuparts run ends. ret=0 End: 2021-08-16 14:55:23 GMT