Start: 2022-11-26 09:12:22 GMT [testing] Package: yanosim Source: yanosim (0.1-4) Version: 0.1-4+b1 Installed-Size: 46 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-click, python3-numpy, python3-pysam, python3-scipy, python3:any Description: read simulator nanopore DRS datasets Homepage: https://github.com/bartongroup/yanosim Description-md5: 768d65e784fd636a7b80a25948a82fa0 Section: science Priority: optional Filename: pool/main/y/yanosim/yanosim_0.1-4+b1_amd64.deb Size: 9920 MD5sum: 71e38c3f452b5e70c2ff5d78254ff3d4 SHA256: e4887e4e6da9abf30bfaa746a099d4e0f1fa70178bc13c2db011a2433c9c2509 [sid] Package: yanosim Version: 0.1-5 Installed-Size: 45 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-click, python3-numpy, python3-pysam, python3-scipy, python3:any Description: read simulator nanopore DRS datasets Homepage: https://github.com/bartongroup/yanosim Description-md5: 768d65e784fd636a7b80a25948a82fa0 Section: science Priority: optional Filename: pool/main/y/yanosim/yanosim_0.1-5_amd64.deb Size: 9624 MD5sum: 1d7d0f64b16f3b7049dc16b92b4edadd SHA256: bdfe2b4cea41d9ef2ed6a1ed103444bb1b8d86b72c41aaf136250d61dc860a2c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt yanosim=0.1-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt yanosim=0.1-5 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp0gya2r98 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp0gya2r98 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/proc'] 0m2.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/proc'] 0m2.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/pts'] 0m2.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/pts'] 0m2.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/ptmx'] 0m2.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/ptmx'] 0m2.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/console'] 0m2.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/console'] 0m2.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/shm'] 0m2.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/shm'] 0m2.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.4s DEBUG: Created policy-rc.d and chmodded it. 0m2.4s DEBUG: Created resolv.conf. 0m2.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp0gya2r98/tmp/scripts/ 0m2.4s INFO: Running scripts post_chroot_unpack 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', 'update'] 0m5.7s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [164 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8764 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5920 kB] Fetched 14.8 MB in 2s (6109 kB/s) Reading package lists... 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', 'update'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', '-yf', 'dist-upgrade'] 0m8.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libdebconfclient0 libgcrypt20 libmount1 libsmartcols1 libuuid1 mount util-linux util-linux-extra 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2665 kB of archives. After this operation, 54.3 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 bsdutils amd64 1:2.38.1-3 [93.9 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libsmartcols1 amd64 2.38.1-3 [106 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 util-linux-extra amd64 2.38.1-3 [110 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 util-linux amd64 2.38.1-3 [1177 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 mount amd64 2.38.1-3 [134 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libblkid1 amd64 2.38.1-3 [147 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libdebconfclient0 amd64 0.265 [7720 B] Get:8 http://deb.debian.org/debian bookworm/main amd64 libgcrypt20 amd64 1.10.1-3 [696 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libmount1 amd64 2.38.1-3 [165 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libuuid1 amd64 2.38.1-3 [28.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2665 kB in 0s (17.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8605 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-3_amd64.deb ... Unpacking bsdutils (1:2.38.1-3) over (1:2.38.1-1.1+b1) ... Setting up bsdutils (1:2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8604 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38.1-3_amd64.deb ... Unpacking libsmartcols1:amd64 (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up libsmartcols1:amd64 (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8603 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.38.1-3_amd64.deb ... Unpacking util-linux-extra (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up util-linux-extra (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8602 files and directories currently installed.) Preparing to unpack .../util-linux_2.38.1-3_amd64.deb ... Unpacking util-linux (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up util-linux (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8600 files and directories currently installed.) Preparing to unpack .../mount_2.38.1-3_amd64.deb ... Unpacking mount (2.38.1-3) over (2.38.1-1.1+b1) ... Preparing to unpack .../libblkid1_2.38.1-3_amd64.deb ... Unpacking libblkid1:amd64 (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up libblkid1:amd64 (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8597 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.265_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.265) over (0.264) ... Setting up libdebconfclient0:amd64 (0.265) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8597 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.1-3_amd64.deb ... Unpacking libgcrypt20:amd64 (1.10.1-3) over (1.10.1-2) ... Setting up libgcrypt20:amd64 (1.10.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8597 files and directories currently installed.) Preparing to unpack .../libmount1_2.38.1-3_amd64.deb ... Unpacking libmount1:amd64 (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up libmount1:amd64 (2.38.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8596 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38.1-3_amd64.deb ... Unpacking libuuid1:amd64 (2.38.1-3) over (2.38.1-1.1+b1) ... Setting up libuuid1:amd64 (2.38.1-3) ... Setting up mount (2.38.1-3) ... Processing triggers for libc-bin (2.36-5) ... 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', '-yf', 'dist-upgrade'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.4s DUMP: e9f79271bf7467a0ddf983e611fe8b0c - 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.4s INFO: Running scripts post_setup 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_setup_dummy_users'] 0m9.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_setup_dummy_users'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_setup_forbid_home'] 0m9.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_setup_forbid_home'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_setup_minimize'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_setup_minimize'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_setup_zz_backports'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_setup_zz_backports'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.4s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed bsdutils bsdutils 1:2.38.1-3 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9+b1 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-9 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libblkid1:amd64 libblkid1 2.38.1-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-5 install ok installed libc6:amd64 libc6 2.36-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.7-0.1 install ok installed libmount1:amd64 libmount1 2.38.1-3 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-2 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b3 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b3 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-3 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 252.1-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 252.1-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-3 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-4 install ok installed perl-base perl-base 5.36.0-4 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-4 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.05-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 33 install ok installed usrmerge usrmerge 33 install ok installed util-linux util-linux 2.38.1-3 install ok installed util-linux-extra util-linux-extra 2.38.1-3 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m9.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 0m9.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 0m9.8s INFO: Running scripts is_testable 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/is_testable_uninstallable'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/is_testable_uninstallable'] 0m9.8s INFO: Running scripts pre_test 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_test_exceptions'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_test_exceptions'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_test_root_password'] 0m9.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_test_root_password'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'show', '--no-all-versions', 'yanosim'] 0m10.0s DUMP: Package: yanosim Source: yanosim (0.1-4) Version: 0.1-4+b1 Installed-Size: 46 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-click, python3-numpy, python3-pysam, python3-scipy, python3:any Description-en: read simulator nanopore DRS datasets Yanosim has three options: . 1. yanosim model: Creates an model of mismatches, insertions and deletions based on an alignment of nanopore DRS reads to a reference. Reads should be aligned to a transcriptome i.e. without spliced alignment, using minimap2. They should have the cs tag. 2. yanosim quantify: Quantify the number of reads mapping to each transcript in a reference, so that the right number of reads can be simulated. 3. yanosim simulate: Given a model created using yanosim model, and per-transcript read counts created using yanosim simulate, simulate error-prone long-reads from the given fasta file. Description-md5: 768d65e784fd636a7b80a25948a82fa0 Homepage: https://github.com/bartongroup/yanosim Section: science Priority: optional Filename: pool/main/y/yanosim/yanosim_0.1-4+b1_amd64.deb Size: 9920 MD5sum: 71e38c3f452b5e70c2ff5d78254ff3d4 SHA256: e4887e4e6da9abf30bfaa746a099d4e0f1fa70178bc13c2db011a2433c9c2509 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'show', '--no-all-versions', 'yanosim'] 0m10.0s INFO: apt-cache knows about the following packages: yanosim 0m10.0s INFO: Running scripts pre_install 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_database-server'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_database-server'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_exceptions'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_exceptions'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_extras'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_extras'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'policy'] 0m10.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'policy'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'policy', 'yanosim'] 0m10.1s DUMP: yanosim: Installed: (none) Candidate: 0.1-4+b1 Version table: 0.1-4+b1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'policy', 'yanosim'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', '-y', 'install', 'yanosim'] 0m44.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-12 g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libdeflate0 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhts3 libhtscodecs2 libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev linux-libc-dev media-types python3 python3-all python3-all-dev python3-beniget python3-click python3-colorama python3-decorator python3-dev python3-distutils python3-gast python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources python3-ply python3-pysam python3-pythran python3-scipy python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-minimal readline-common rpcsvc-proto zlib1g-dev Suggested packages: binutils-doc cpp-doc gcc-12-locales cpp-12-doc g++-multilib g++-12-multilib gcc-12-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc krb5-doc krb5-user libstdc++-12-doc libxsimd-doc python3-doc python3-tk python3-venv gfortran python-numpy-doc python3-pytest python3-setuptools python-ply-doc python-scipy-doc python3.10-venv python3.10-doc binfmt-support python3.11-venv python3.11-doc readline-doc Recommended packages: manpages manpages-dev libc-devtools ca-certificates javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-pil The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-12 g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libdeflate0 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhts3 libhtscodecs2 libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev linux-libc-dev media-types python3 python3-all python3-all-dev python3-beniget python3-click python3-colorama python3-decorator python3-dev python3-distutils python3-gast python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources python3-ply python3-pysam python3-pythran python3-scipy python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-minimal readline-common rpcsvc-proto yanosim zlib1g-dev 0 upgraded, 111 newly installed, 0 to remove and 0 not upgraded. Need to get 135 MB of archives. After this operation, 736 MB of additional disk space will be used. 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[969 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-9 [2197 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-9 [883 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-9 [145 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-9 [2436 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-9 [19.3 MB] Get:49 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-1 [5192 B] Get:50 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-5 [42.9 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.0.8-1 [1679 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-1 [118 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 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bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-2+b1 [183 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.50.0-1+b1 [73.1 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.86.0-2 [359 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-9 [792 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-2 [116 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 4.5.0-4 [142 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-2 [6495 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.10.1-2 [2202 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-11 [28.6 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-2 [38.4 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-2 [4851 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-2 [50.8 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libpython3.10 amd64 3.10.8-3 [1753 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-4.1 [193 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-dev amd64 3.10.8-3 [4127 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.10.6-1 [22.0 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.10.6-1 [1068 B] Get:91 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.0-3 [1712 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.10.8-1 [77.3 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.10.8-1 [139 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.10.6-1 [1060 B] Get:96 http://deb.debian.org/debian bookworm/main amd64 python3.10-dev amd64 3.10.8-3 [508 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.10.6-1 [25.4 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.10.6-1 [1068 B] Get:99 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:100 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-2 [9808 B] Get:101 http://deb.debian.org/debian bookworm/main amd64 python3-colorama all 0.4.5-3 [28.5 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 python3-click all 8.0.3-1 [91.9 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-2 [16.5 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 65.5.0-1 [278 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.0-3 [559 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.21.5-2 [3845 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 python3-pysam amd64 0.17.0+ds-2+b2 [1618 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.8.1-14+b1 [17.2 MB] Get:111 http://deb.debian.org/debian bookworm/main amd64 yanosim amd64 0.1-4+b1 [9920 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 MB in 2s (58.6 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8596 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.7-1_amd64.deb ... Unpacking libssl3:amd64 (3.0.7-1) ... Selecting previously unselected package libpython3.10-minimal:amd64. Preparing to unpack .../libpython3.10-minimal_3.10.8-3_amd64.deb ... Unpacking libpython3.10-minimal:amd64 (3.10.8-3) ... Selecting previously unselected package libexpat1:amd64. 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Unpacking libjs-sphinxdoc (4.5.0-4) ... Selecting previously unselected package libopenblas0-pthread:amd64. Preparing to unpack .../57-libopenblas0-pthread_0.3.21+ds-2_amd64.deb ... Unpacking libopenblas0-pthread:amd64 (0.3.21+ds-2) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../58-liblapack3_3.10.1-2_amd64.deb ... Unpacking liblapack3:amd64 (3.10.1-2) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../59-liblbfgsb0_3.0+dfsg.3-11_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Selecting previously unselected package libopenblas0:amd64. Preparing to unpack .../60-libopenblas0_0.3.21+ds-2_amd64.deb ... Unpacking libopenblas0:amd64 (0.3.21+ds-2) ... Selecting previously unselected package libopenblas-pthread-dev:amd64. Preparing to unpack .../61-libopenblas-pthread-dev_0.3.21+ds-2_amd64.deb ... Unpacking libopenblas-pthread-dev:amd64 (0.3.21+ds-2) ... Selecting previously unselected package libopenblas-dev:amd64. Preparing to unpack .../62-libopenblas-dev_0.3.21+ds-2_amd64.deb ... Unpacking libopenblas-dev:amd64 (0.3.21+ds-2) ... Selecting previously unselected package libpython3.10:amd64. Preparing to unpack .../63-libpython3.10_3.10.8-3_amd64.deb ... Unpacking libpython3.10:amd64 (3.10.8-3) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../64-zlib1g-dev_1%3a1.2.11.dfsg-4.1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-4.1) ... Selecting previously unselected package libpython3.10-dev:amd64. Preparing to unpack .../65-libpython3.10-dev_3.10.8-3_amd64.deb ... Unpacking libpython3.10-dev:amd64 (3.10.8-3) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../66-libpython3-dev_3.10.6-1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.10.6-1) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../67-libpython3-all-dev_3.10.6-1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.10.6-1) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../68-libpython3.11-stdlib_3.11.0-3_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.0-3) ... Selecting previously unselected package libxsimd-dev:amd64. Preparing to unpack .../69-libxsimd-dev_8.1.0-7_amd64.deb ... Unpacking libxsimd-dev:amd64 (8.1.0-7) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../70-python3-lib2to3_3.10.8-1_all.deb ... Unpacking python3-lib2to3 (3.10.8-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../71-python3-distutils_3.10.8-1_all.deb ... Unpacking python3-distutils (3.10.8-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../72-python3-all_3.10.6-1_amd64.deb ... Unpacking python3-all (3.10.6-1) ... Selecting previously unselected package python3.10-dev. Preparing to unpack .../73-python3.10-dev_3.10.8-3_amd64.deb ... Unpacking python3.10-dev (3.10.8-3) ... Selecting previously unselected package python3-dev. Preparing to unpack .../74-python3-dev_3.10.6-1_amd64.deb ... Unpacking python3-dev (3.10.6-1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../75-python3-all-dev_3.10.6-1_amd64.deb ... Unpacking python3-all-dev (3.10.6-1) ... Selecting previously unselected package python3-gast. Preparing to unpack .../76-python3-gast_0.5.2-2_all.deb ... Unpacking python3-gast (0.5.2-2) ... Selecting previously unselected package python3-beniget. Preparing to unpack .../77-python3-beniget_0.4.1-2_all.deb ... Unpacking python3-beniget (0.4.1-2) ... Selecting previously unselected package python3-colorama. Preparing to unpack .../78-python3-colorama_0.4.5-3_all.deb ... Unpacking python3-colorama (0.4.5-3) ... Selecting previously unselected package python3-click. Preparing to unpack .../79-python3-click_8.0.3-1_all.deb ... Unpacking python3-click (8.0.3-1) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../80-python3-decorator_5.1.1-2_all.deb ... Unpacking python3-decorator (5.1.1-2) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../81-python3-pkg-resources_65.5.0-1_all.deb ... Unpacking python3-pkg-resources (65.5.0-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../82-python3.11_3.11.0-3_amd64.deb ... Unpacking python3.11 (3.11.0-3) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../83-python3-numpy_1%3a1.21.5-2_amd64.deb ... Unpacking python3-numpy (1:1.21.5-2) ... Selecting previously unselected package python3-ply. Preparing to unpack .../84-python3-ply_3.11-5_all.deb ... Unpacking python3-ply (3.11-5) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../85-python3-pysam_0.17.0+ds-2+b2_amd64.deb ... Unpacking python3-pysam (0.17.0+ds-2+b2) ... Selecting previously unselected package python3-pythran. Preparing to unpack .../86-python3-pythran_0.11.0+ds-7_amd64.deb ... Unpacking python3-pythran (0.11.0+ds-7) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../87-python3-scipy_1.8.1-14+b1_amd64.deb ... Unpacking python3-scipy (1.8.1-14+b1) ... Selecting previously unselected package yanosim. Preparing to unpack .../88-yanosim_0.1-4+b1_amd64.deb ... Unpacking yanosim (0.1-4+b1) ... Setting up libhtscodecs2:amd64 (1.3.0-4) ... Setting up media-types (8.0.0) ... Setting up libkeyutils1:amd64 (1.6.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b5) ... Setting up libsqlite3-0:amd64 (3.40.0-1) ... Setting up binutils-common:amd64 (2.39-8) ... Setting up libnghttp2-14:amd64 (1.50.0-1+b1) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up linux-libc-dev:amd64 (6.0.8-1) ... Setting up libctf-nobfd0:amd64 (2.39-8) ... Setting up libgomp1:amd64 (12.2.0-9) ... Setting up libkrb5support0:amd64 (1.20.1-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up libblas3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.2-4) ... Setting up libmpfr6:amd64 (4.1.0-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libquadmath0:amd64 (12.2.0-9) ... Setting up libmpc3:amd64 (1.2.1-2) ... Setting up libatomic1:amd64 (12.2.0-9) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libk5crypto3:amd64 (1.20.1-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-9) ... Setting up libubsan1:amd64 (12.2.0-9) ... Setting up libcrypt-dev:amd64 (1:4.4.33-1) ... Setting up libasan8:amd64 (12.2.0-9) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libkrb5-3:amd64 (1.20.1-1) ... Setting up libpython3.11-minimal:amd64 (3.11.0-3) ... Setting up libtsan2:amd64 (12.2.0-9) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.39-8) ... Setting up libisl23:amd64 (0.25-1) ... Setting up libc-dev-bin (2.36-5) ... Setting up readline-common (8.2-1.2) ... Setting up libcc1-0:amd64 (12.2.0-9) ... Setting up liblsan0:amd64 (12.2.0-9) ... Setting up libitm1:amd64 (12.2.0-9) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-2) ... Setting up libctf0:amd64 (2.39-8) ... Setting up python3.11-minimal (3.11.0-3) ... Setting up liblapack3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-9) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.2-1.2) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-2+b1) ... Setting up libgprofng0:amd64 (2.39-8) ... Setting up libgcc-12-dev:amd64 (12.2.0-9) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-1) ... Setting up libjs-sphinxdoc (4.5.0-4) ... Setting up libopenblas0:amd64 (0.3.21+ds-2) ... Setting up cpp (4:12.2.0-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Setting up binutils-x86-64-linux-gnu (2.39-8) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libcurl3-gnutls:amd64 (7.86.0-2) ... Setting up binutils (2.39-8) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-2) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-9) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up libpython3.11-stdlib:amd64 (3.11.0-3) ... Setting up gcc (4:12.2.0-1) ... Setting up libpython3.10-stdlib:amd64 (3.10.8-3) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-5) ... Setting up libpython3-stdlib:amd64 (3.10.6-1) ... Setting up python3.11 (3.11.0-3) ... Setting up libpython3.10:amd64 (3.10.8-3) ... Setting up python3.10 (3.10.8-3) ... Setting up libstdc++-12-dev:amd64 (12.2.0-9) ... Setting up python3 (3.10.6-1) ... Setting up python3-decorator (5.1.1-2) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-4.1) ... Setting up python3-lib2to3 (3.10.8-1) ... Setting up g++-12 (12.2.0-9) ... Setting up python3-pkg-resources (65.5.0-1) ... Setting up python3-distutils (3.10.8-1) ... Setting up libboost1.74-dev:amd64 (1.74.0-17+b2) ... Setting up python3-pysam (0.17.0+ds-2+b2) ... Setting up python3-colorama (0.4.5-3) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.10.6-1) ... Setting up python3-click (8.0.3-1) ... Setting up python3-beniget (0.4.1-2) ... Setting up libpython3.10-dev:amd64 (3.10.8-3) ... Setting up python3-numpy (1:1.21.5-2) ... Setting up python3.10-dev (3.10.8-3) ... Setting up g++ (4:12.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libpython3-dev:amd64 (3.10.6-1) ... Setting up libpython3-all-dev:amd64 (3.10.6-1) ... Setting up python3-dev (3.10.6-1) ... Setting up python3-all-dev (3.10.6-1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.8.1-14+b1) ... Setting up yanosim (0.1-4+b1) ... Processing triggers for libc-bin (2.36-5) ... 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', '-y', 'install', 'yanosim'] 0m44.8s INFO: Running scripts post_install 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_install_exceptions'] 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_install_exceptions'] 0m44.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 0m46.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 0m46.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp0gya2r98 to sid 0m46.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m46.0s INFO: Running scripts pre_distupgrade 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_distupgrade_exceptions'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_distupgrade_exceptions'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', 'update'] 0m50.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [161 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9400 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6946 kB] Fetched 16.5 MB in 3s (5043 kB/s) Reading package lists... 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', 'update'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', '-yf', 'dist-upgrade'] 0m56.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpython3.11 libpython3.11-dev python3.11-dev The following packages will be upgraded: bsdutils libblkid1 liblzma5 libmount1 libpython3-all-dev libpython3-dev libpython3-stdlib libsmartcols1 libuuid1 mount python3 python3-all python3-all-dev python3-dev python3-minimal python3-pysam tar util-linux util-linux-extra yanosim zlib1g zlib1g-dev 22 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 35.6 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.38.1-4 [94.2 kB] Get:2 http://deb.debian.org/debian sid/main amd64 tar amd64 1.34+dfsg-1.1 [836 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.38.1-4 [106 kB] Get:4 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.38.1-4 [110 kB] Get:5 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.38.1-4 [1176 kB] Get:6 http://deb.debian.org/debian sid/main amd64 mount amd64 2.38.1-4 [134 kB] Get:7 http://deb.debian.org/debian sid/main amd64 python3-all-dev amd64 3.10.6-3 [1076 B] Get:8 http://deb.debian.org/debian sid/main amd64 python3-all amd64 3.10.6-3 [1064 B] Get:9 http://deb.debian.org/debian sid/main amd64 libpython3-all-dev amd64 3.10.6-3 [1072 B] Get:10 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.10.6-3 [8816 B] Get:11 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.10.6-3 [25.4 kB] Get:12 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.10.6-3 [25.5 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.10.6-3 [25.2 kB] Get:14 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:15 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.2.13.dfsg-1 [86.7 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libpython3.11 amd64 3.11.0-3 [1986 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libpython3.11-dev amd64 3.11.0-3 [4738 kB] Get:18 http://deb.debian.org/debian sid/main amd64 python3.11-dev amd64 3.11.0-3 [615 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.10.6-3 [8588 B] Get:20 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.38.1-4 [147 kB] Get:21 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.2.8-0.0 [186 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.38.1-4 [165 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.38.1-4 [28.4 kB] Get:24 http://deb.debian.org/debian sid/main amd64 python3-pysam amd64 0.19.1+ds-1 [1671 kB] Get:25 http://deb.debian.org/debian sid/main amd64 yanosim amd64 0.1-5 [9624 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.1 MB in 0s (27.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34349 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-4_amd64.deb ... Unpacking bsdutils (1:2.38.1-4) over (1:2.38.1-3) ... Setting up bsdutils (1:2.38.1-4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34349 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38.1-4_amd64.deb ... Unpacking libsmartcols1:amd64 (2.38.1-4) over (2.38.1-3) ... Setting up libsmartcols1:amd64 (2.38.1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34349 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.38.1-4_amd64.deb ... Unpacking util-linux-extra (2.38.1-4) over (2.38.1-3) ... Setting up util-linux-extra (2.38.1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34349 files and directories currently installed.) Preparing to unpack .../util-linux_2.38.1-4_amd64.deb ... Unpacking util-linux (2.38.1-4) over (2.38.1-3) ... Setting up util-linux (2.38.1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34349 files and directories currently installed.) Preparing to unpack .../0-mount_2.38.1-4_amd64.deb ... Unpacking mount (2.38.1-4) over (2.38.1-3) ... Preparing to unpack .../1-python3-all-dev_3.10.6-3_amd64.deb ... Unpacking python3-all-dev (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../2-python3-all_3.10.6-3_amd64.deb ... Unpacking python3-all (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../3-libpython3-all-dev_3.10.6-3_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../4-libpython3-dev_3.10.6-3_amd64.deb ... Unpacking libpython3-dev:amd64 (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../5-python3-dev_3.10.6-3_amd64.deb ... Unpacking python3-dev (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../6-python3-minimal_3.10.6-3_amd64.deb ... Unpacking python3-minimal (3.10.6-3) over (3.10.6-1) ... Setting up python3-minimal (3.10.6-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34349 files and directories currently installed.) Preparing to unpack .../python3_3.10.6-3_amd64.deb ... Unpacking python3 (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) over (1:1.2.11.dfsg-4.1) ... Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.13.dfsg-1) over (1:1.2.11.dfsg-4.1) ... Setting up zlib1g:amd64 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libpython3.11:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34352 files and directories currently installed.) Preparing to unpack .../libpython3.11_3.11.0-3_amd64.deb ... Unpacking libpython3.11:amd64 (3.11.0-3) ... Selecting previously unselected package libpython3.11-dev:amd64. Preparing to unpack .../libpython3.11-dev_3.11.0-3_amd64.deb ... Unpacking libpython3.11-dev:amd64 (3.11.0-3) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../python3.11-dev_3.11.0-3_amd64.deb ... Unpacking python3.11-dev (3.11.0-3) ... Preparing to unpack .../libpython3-stdlib_3.10.6-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.10.6-3) over (3.10.6-1) ... Preparing to unpack .../libblkid1_2.38.1-4_amd64.deb ... Unpacking libblkid1:amd64 (2.38.1-4) over (2.38.1-3) ... Setting up libblkid1:amd64 (2.38.1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34587 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.8-0.0_amd64.deb ... Unpacking liblzma5:amd64 (5.2.8-0.0) over (5.2.7-0.1) ... Setting up liblzma5:amd64 (5.2.8-0.0) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34587 files and directories currently installed.) Preparing to unpack .../libmount1_2.38.1-4_amd64.deb ... Unpacking libmount1:amd64 (2.38.1-4) over (2.38.1-3) ... Setting up libmount1:amd64 (2.38.1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34587 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38.1-4_amd64.deb ... Unpacking libuuid1:amd64 (2.38.1-4) over (2.38.1-3) ... Setting up libuuid1:amd64 (2.38.1-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34587 files and directories currently installed.) Preparing to unpack .../python3-pysam_0.19.1+ds-1_amd64.deb ... Unpacking python3-pysam (0.19.1+ds-1) over (0.17.0+ds-2+b2) ... Preparing to unpack .../yanosim_0.1-5_amd64.deb ... Unpacking yanosim (0.1-5) over (0.1-4+b1) ... Setting up libpython3-dev:amd64 (3.10.6-3) ... Setting up libpython3.11:amd64 (3.11.0-3) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up mount (2.38.1-4) ... Setting up libpython3-stdlib:amd64 (3.10.6-3) ... Setting up python3 (3.10.6-3) ... Setting up libpython3.11-dev:amd64 (3.11.0-3) ... Setting up libpython3-all-dev:amd64 (3.10.6-3) ... Setting up python3-dev (3.10.6-3) ... Setting up python3-pysam (0.19.1+ds-1) ... Setting up python3.11-dev (3.11.0-3) ... Setting up yanosim (0.1-5) ... Setting up python3-all (3.10.6-3) ... Setting up python3-all-dev (3.10.6-3) ... Processing triggers for libc-bin (2.36-5) ... 0m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', '-yf', 'dist-upgrade'] 0m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m56.5s DUMP: 4078c028df967250599b71f35ce13870 - 0m56.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m56.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'show', '--no-all-versions', 'yanosim'] 0m56.8s DUMP: Package: yanosim Version: 0.1-5 Installed-Size: 45 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-click, python3-numpy, python3-pysam, python3-scipy, python3:any Description-en: read simulator nanopore DRS datasets Yanosim has three options: . 1. yanosim model: Creates an model of mismatches, insertions and deletions based on an alignment of nanopore DRS reads to a reference. Reads should be aligned to a transcriptome i.e. without spliced alignment, using minimap2. They should have the cs tag. 2. yanosim quantify: Quantify the number of reads mapping to each transcript in a reference, so that the right number of reads can be simulated. 3. yanosim simulate: Given a model created using yanosim model, and per-transcript read counts created using yanosim simulate, simulate error-prone long-reads from the given fasta file. Description-md5: 768d65e784fd636a7b80a25948a82fa0 Homepage: https://github.com/bartongroup/yanosim Section: science Priority: optional Filename: pool/main/y/yanosim/yanosim_0.1-5_amd64.deb Size: 9624 MD5sum: 1d7d0f64b16f3b7049dc16b92b4edadd SHA256: bdfe2b4cea41d9ef2ed6a1ed103444bb1b8d86b72c41aaf136250d61dc860a2c 0m56.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'show', '--no-all-versions', 'yanosim'] 0m56.8s INFO: apt-cache knows about the following packages: yanosim 0m56.8s INFO: Running scripts pre_install 0m56.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_database-server'] 0m56.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_database-server'] 0m56.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_exceptions'] 0m56.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_exceptions'] 0m56.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_extras'] 0m56.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_extras'] 0m56.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_foreign_architecture'] 0m56.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_foreign_architecture'] 0m56.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m56.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m56.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'policy'] 0m56.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m56.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'policy'] 0m56.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'policy', 'yanosim'] 0m56.8s DUMP: yanosim: Installed: 0.1-5 Candidate: 0.1-5 Version table: *** 0.1-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m56.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'policy', 'yanosim'] 0m56.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', '-y', 'install', 'yanosim'] 0m57.4s DUMP: Reading package lists... Building dependency tree... Reading state information... yanosim is already the newest version (0.1-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', '-y', 'install', 'yanosim'] 0m57.4s INFO: Running scripts post_install 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_install_exceptions'] 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_install_exceptions'] 0m57.4s INFO: Running scripts post_distupgrade 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_distupgrade_exceptions'] 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_distupgrade_exceptions'] 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_distupgrade_zz_backports'] 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_distupgrade_zz_backports'] 0m57.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 0m58.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 0m58.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 1m0.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 1m0.1s INFO: Running scripts pre_install 1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_database-server'] 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_database-server'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_exceptions'] 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_exceptions'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_extras'] 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_extras'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_foreign_architecture'] 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_foreign_architecture'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'policy'] 1m0.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'policy'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'policy', 'yanosim'] 1m0.3s DUMP: yanosim: Installed: 0.1-5 Candidate: 0.1-5 Version table: *** 0.1-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-cache', 'policy', 'yanosim'] 1m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', '-y', 'install', 'yanosim=0.1-5'] 1m0.8s DUMP: Reading package lists... Building dependency tree... Reading state information... yanosim is already the newest version (0.1-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', '-y', 'install', 'yanosim=0.1-5'] 1m0.8s INFO: Running scripts post_install 1m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_install_exceptions'] 1m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_install_exceptions'] 1m0.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 1m2.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 1m4.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', '-ac', '--ignore-obsolete'] 1m8.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', '-ac', '--ignore-obsolete'] 1m8.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m8.6s DUMP: 0.15.6 1m8.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m8.6s INFO: Running adequate version 0.15.6 now. 1m8.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'yanosim'] 1m8.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'yanosim'] 1m8.8s INFO: Running scripts pre_remove 1m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_remove_exceptions'] 1m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/pre_remove_exceptions'] 1m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m12.0s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed binutils binutils 2.39-8 install ok installed binutils-common:amd64 binutils-common 2.39-8 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.39-8 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed coreutils coreutils 9.1-1 install ok installed cpp cpp 4:12.2.0-1 install ok installed cpp-12 cpp-12 12.2.0-9 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9+b1 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed g++ g++ 4:12.2.0-1 install ok installed g++-12 g++-12 12.2.0-9 install ok installed gcc gcc 4:12.2.0-1 install ok installed gcc-12 gcc-12 12.2.0-9 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-9 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libasan8:amd64 libasan8 12.2.0-9 install ok installed libatomic1:amd64 libatomic1 12.2.0-9 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libbinutils:amd64 libbinutils 2.39-8 install ok installed libblas3:amd64 libblas3 3.10.1-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0-17+b2 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b5 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-5 install ok installed libc-dev-bin libc-dev-bin 2.36-5 install ok installed libc6:amd64 libc6 2.36-5 install ok installed libc6-dev:amd64 libc6-dev 2.36-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcc1-0:amd64 libcc1-0 12.2.0-9 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.33-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.39-8 install ok installed libctf0:amd64 libctf0 2.39-8 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.86.0-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.2.0-9 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-9 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgomp1:amd64 libgomp1 12.2.0-9 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgprofng0:amd64 libgprofng0 2.39-8 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhts3:amd64 libhts3 1.16+ds-3 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.3.0-4 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libisl23:amd64 libisl23 0.25-1 install ok installed libitm1:amd64 libitm1 12.2.0-9 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 4.5.0-4 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-1 install ok installed liblapack3:amd64 liblapack3 3.10.1-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.3-11 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-2+b1 install ok installed liblsan0:amd64 liblsan0 12.2.0-9 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.8-0.0 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libmpc3:amd64 libmpc3 1.2.1-2 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libmpfr6:amd64 libmpfr6 4.1.0-3 install ok installed libncursesw6:amd64 libncursesw6 6.3+20220423-2 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.50.0-1+b1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.21+ds-2 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.21+ds-2 install ok installed libopenblas0:amd64 libopenblas0 0.3.21+ds-2 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.21+ds-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-2 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-4 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.10.6-3 install ok installed libpython3-dev:amd64 libpython3-dev 3.10.6-3 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.10.6-3 install ok installed libpython3.10:amd64 libpython3.10 3.10.8-3 install ok installed libpython3.10-dev:amd64 libpython3.10-dev 3.10.8-3 install ok installed libpython3.10-minimal:amd64 libpython3.10-minimal 3.10.8-3 install ok installed libpython3.10-stdlib:amd64 libpython3.10-stdlib 3.10.8-3 install ok installed libpython3.11:amd64 libpython3.11 3.11.0-3 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.0-3 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.0-3 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.0-3 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-9 install ok installed libreadline8:amd64 libreadline8 8.2-1.2 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b3 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b3 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.0-1 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.7-1 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.2.0-9 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 252.1-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtsan2:amd64 libtsan2 12.2.0-9 install ok installed libubsan1:amd64 libubsan1 12.2.0-9 install ok installed libudev1:amd64 libudev1 252.1-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libxsimd-dev:amd64 libxsimd-dev 8.1.0-7 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed linux-libc-dev:amd64 linux-libc-dev 6.0.8-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 8.0.0 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-4 install ok installed perl-base perl-base 5.36.0-4 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-4 install ok installed python3 python3 3.10.6-3 install ok installed python3-all python3-all 3.10.6-3 install ok installed python3-all-dev python3-all-dev 3.10.6-3 install ok installed python3-beniget python3-beniget 0.4.1-2 install ok installed python3-click python3-click 8.0.3-1 install ok installed python3-colorama python3-colorama 0.4.5-3 install ok installed python3-decorator python3-decorator 5.1.1-2 install ok installed python3-dev python3-dev 3.10.6-3 install ok installed python3-distutils python3-distutils 3.10.8-1 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-lib2to3 python3-lib2to3 3.10.8-1 install ok installed python3-minimal python3-minimal 3.10.6-3 install ok installed python3-numpy python3-numpy 1:1.21.5-2 install ok installed python3-pkg-resources python3-pkg-resources 65.5.0-1 install ok installed python3-ply python3-ply 3.11-5 install ok installed python3-pysam python3-pysam 0.19.1+ds-1 install ok installed python3-pythran python3-pythran 0.11.0+ds-7 install ok installed python3-scipy python3-scipy 1.8.1-14+b1 install ok installed python3.10 python3.10 3.10.8-3 install ok installed python3.10-dev python3.10-dev 3.10.8-3 install ok installed python3.10-minimal python3.10-minimal 3.10.8-3 install ok installed python3.11 python3.11 3.11.0-3 install ok installed python3.11-dev python3.11-dev 3.11.0-3 install ok installed python3.11-minimal python3.11-minimal 3.11.0-3 install ok installed readline-common readline-common 8.2-1.2 install ok installed rpcsvc-proto rpcsvc-proto 1.4.2-4 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.05-7 install ok installed tar tar 1.34+dfsg-1.1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 33 install ok installed usrmerge usrmerge 33 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed yanosim yanosim 0.1-5 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.13.dfsg-1 1m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'media-types', 'python3', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-click', 'python3-colorama', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pkg-resources', 'python3-ply', 'python3-pysam', 'python3-pythran', 'python3-scipy', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64', 'yanosim'] 1m15.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-12 g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libdeflate0 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhts3 libhtscodecs2 libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev linux-libc-dev media-types python3 python3-all python3-all-dev python3-beniget python3-click python3-colorama python3-decorator python3-dev python3-distutils python3-gast python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources python3-ply python3-pysam python3-pythran python3-scipy python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto yanosim zlib1g-dev 0 upgraded, 0 newly installed, 114 to remove and 0 not upgraded. After this operation, 771 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34600 files and directories currently installed.) Removing yanosim (0.1-5) ... Removing python3-scipy (1.8.1-14+b1) ... Removing python3-pythran (0.11.0+ds-7) ... Removing g++ (4:12.2.0-1) ... Removing gcc (4:12.2.0-1) ... Removing cpp (4:12.2.0-1) ... Removing g++-12 (12.2.0-9) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0-17+b2) ... Removing libstdc++-12-dev:amd64 (12.2.0-9) ... Removing python3-numpy (1:1.21.5-2) ... Removing liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Removing liblapack3:amd64 (3.10.1-2) ... Removing libblas3:amd64 (3.10.1-2) ... Removing python3-pysam (0.19.1+ds-1) ... Removing libhts3:amd64 (1.16+ds-3) ... Removing libcurl3-gnutls:amd64 (7.86.0-2) ... Removing libbrotli1:amd64 (1.0.9-2+b5) ... Removing python3-all-dev (3.10.6-3) ... Removing python3.11-dev (3.11.0-3) ... Removing libpython3-all-dev:amd64 (3.10.6-3) ... Removing libpython3.11-dev:amd64 (3.11.0-3) ... Removing python3-dev (3.10.6-3) ... Removing python3.10-dev (3.10.8-3) ... Removing libdeflate0:amd64 (1.14-1) ... Removing python3-all (3.10.6-3) ... Removing python3.11 (3.11.0-3) ... Removing python3.11-minimal (3.11.0-3) ... Removing libpython3.11:amd64 (3.11.0-3) ... Removing libopenblas-dev:amd64 (0.3.21+ds-2) ... Removing libopenblas-pthread-dev:amd64 (0.3.21+ds-2) ... Removing libopenblas0:amd64 (0.3.21+ds-2) ... Removing libopenblas0-pthread:amd64 (0.3.21+ds-2) ... Removing libgfortran5:amd64 (12.2.0-9) ... Removing libpython3.11-stdlib:amd64 (3.11.0-3) ... Removing libhtscodecs2:amd64 (1.3.0-4) ... Removing libjs-sphinxdoc (4.5.0-4) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-2) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-2+b1) ... Removing libnghttp2-14:amd64 (1.50.0-1+b1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libpython3-dev:amd64 (3.10.6-3) ... Removing python3-click (8.0.3-1) ... Removing python3-distutils (3.10.8-1) ... Removing python3-pkg-resources (65.5.0-1) ... Removing libpython3.11-minimal:amd64 (3.11.0-3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing libxsimd-dev:amd64 (8.1.0-7) ... Removing python3-beniget (0.4.1-2) ... Removing python3-colorama (0.4.5-3) ... Removing python3-decorator (5.1.1-2) ... Removing python3-gast (0.5.2-2) ... Removing python3-lib2to3 (3.10.8-1) ... Removing python3-ply (3.11-5) ... Removing gcc-12 (12.2.0-9) ... Removing binutils (2.39-8) ... Removing binutils-x86-64-linux-gnu (2.39-8) ... Removing libgprofng0:amd64 (2.39-8) ... Removing libctf0:amd64 (2.39-8) ... Removing libbinutils:amd64 (2.39-8) ... Removing binutils-common:amd64 (2.39-8) ... Removing cpp-12 (12.2.0-9) ... Removing libgcc-12-dev:amd64 (12.2.0-9) ... Removing libasan8:amd64 (12.2.0-9) ... Removing libatomic1:amd64 (12.2.0-9) ... Removing libpython3.10-dev:amd64 (3.10.8-3) ... Removing zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Removing libexpat1-dev:amd64 (2.5.0-1) ... Removing libc6-dev:amd64 (2.36-5) ... Removing libc-dev-bin (2.36-5) ... Removing libcc1-0:amd64 (12.2.0-9) ... Removing libcrypt-dev:amd64 (1:4.4.33-1) ... Removing libctf-nobfd0:amd64 (2.39-8) ... Removing libgomp1:amd64 (12.2.0-9) ... Removing libpython3.10:amd64 (3.10.8-3) ... Removing libisl23:amd64 (0.25-1) ... Removing libitm1:amd64 (12.2.0-9) ... Removing liblsan0:amd64 (12.2.0-9) ... Removing libmpc3:amd64 (1.2.1-2) ... Removing libmpfr6:amd64 (4.1.0-3) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing python3 (3.10.6-3) ... Removing libpython3-stdlib:amd64 (3.10.6-3) ... Removing python3.10 (3.10.8-3) ... Removing python3-minimal (3.10.6-3) ... Removing python3.10-minimal (3.10.8-3) ... Removing libquadmath0:amd64 (12.2.0-9) ... Removing libtirpc-dev:amd64 (1.3.3+ds-1) ... Removing libtsan2:amd64 (12.2.0-9) ... Removing libubsan1:amd64 (12.2.0-9) ... Removing linux-libc-dev:amd64 (6.0.8-1) ... Removing rpcsvc-proto (1.4.2-4) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libpython3.10-stdlib:amd64 (3.10.8-3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-2) ... Removing libncursesw6:amd64 (6.3+20220423-2) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libpython3.10-minimal:amd64 (3.10.8-3) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-1.2) ... Removing libsqlite3-0:amd64 (3.40.0-1) ... Removing media-types (8.0.0) ... Removing readline-common (8.2-1.2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-1) ... Removing libkrb5-3:amd64 (1.20.1-1) ... Removing libk5crypto3:amd64 (1.20.1-1) ... Removing libkeyutils1:amd64 (1.6.3-1) ... Removing libkrb5support0:amd64 (1.20.1-1) ... Removing libssl3:amd64 (3.0.7-1) ... Removing libtirpc-common (1.3.3+ds-1) ... Processing triggers for libc-bin (2.36-5) ... 1m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'media-types', 'python3', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-click', 'python3-colorama', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pkg-resources', 'python3-ply', 'python3-pysam', 'python3-pythran', 'python3-scipy', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64', 'yanosim'] 1m15.8s INFO: Running scripts post_remove 1m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_remove_exceptions'] 1m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_remove_exceptions'] 1m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'media-types', 'python3', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-click', 'python3-colorama', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pkg-resources', 'python3-ply', 'python3-pysam', 'python3-pythran', 'python3-scipy', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 1m15.9s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 8603 files and directories currently installed.) Purging configuration files for binutils-common:amd64 (2.39-8) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-12 which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.74-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.33-1) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-1) ... dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.10 which isn't installed dpkg: warning: ignoring request to remove libpython3.10-dev which isn't installed Purging configuration files for libpython3.10-minimal:amd64 (3.10.8-3) ... dpkg: warning: ignoring request to remove libpython3.10-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.0-3) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for media-types (8.0.0) ... Purging configuration files for python3 (3.10.6-3) ... dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3.10 which isn't installed dpkg: warning: ignoring request to remove python3.10-dev which isn't installed Purging configuration files for python3.10-minimal (3.10.8-3) ... dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.0-3) ... Purging configuration files for readline-common (8.2-1.2) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'media-types', 'python3', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-click', 'python3-colorama', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pkg-resources', 'python3-ply', 'python3-pysam', 'python3-pythran', 'python3-scipy', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 1m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg', '--purge', 'yanosim'] 1m15.9s DUMP: dpkg: warning: ignoring request to remove yanosim which isn't installed 1m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg', '--purge', 'yanosim'] 1m15.9s INFO: Running scripts post_purge 1m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_purge_exceptions'] 1m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_purge_exceptions'] 1m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg', '--purge', '--pending'] 1m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg', '--purge', '--pending'] 1m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg', '--remove', '--pending'] 1m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg', '--remove', '--pending'] 1m15.9s INFO: Running scripts post_test 1m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_test_exceptions'] 1m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'tmp/scripts/post_test_exceptions'] 1m16.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 1m16.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg-divert', '--list'] 1m16.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'dpkg-divert', '--list'] 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', 'clean'] 1m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0gya2r98', 'apt-get', 'clean'] 1m16.5s DEBUG: Recording chroot state 1m17.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/shm'] 1m17.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/shm'] 1m17.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/console'] 1m17.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/console'] 1m17.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/ptmx'] 1m17.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/ptmx'] 1m17.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/pts'] 1m17.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/dev/pts'] 1m17.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/proc'] 1m17.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0gya2r98/proc'] 1m17.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 1m17.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp0gya2r98'] 1m17.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp0gya2r98 1m17.6s INFO: PASS: Upgrading between Debian distributions. 1m17.6s INFO: PASS: All tests. 1m17.6s INFO: piuparts run ends. ret=0 End: 2022-11-26 09:13:39 GMT