Start: 2024-02-07 13:03:22 GMT Package: plasmidid Version: 1.6.5+dfsg-2 Installed-Size: 331 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, ncbi-blast+, bedtools, bowtie2, samtools, prokka, cd-hit, mash, circos Recommends: trimmomatic, spades, python3-biopython, python3-numpy, python3-pandas Description: mapping-based, assembly-assisted plasmid identification tool Homepage: https://github.com/BU-ISCIII/plasmidID Description-md5: d2e67d45c872bf3607006dab611aef29 Section: science Priority: optional Filename: pool/main/p/plasmidid/plasmidid_1.6.5+dfsg-2_amd64.deb Size: 47212 MD5sum: fa7b528e02d2aacb387b176a5356e052 SHA256: e0ec3f8d2467bd4f685d0c2c32b08c57c3cf170714b522094b657a1f11f9336f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie --no-upgrade-test --apt plasmidid=1.6.5+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311836~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie --no-upgrade-test --apt plasmidid=1.6.5+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-27-amd64 #1 SMP Debian 5.10.205-2 (2023-12-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp97__jce4 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp97__jce4 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp97__jce4', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp97__jce4', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp97__jce4/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp97__jce4/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp97__jce4/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-get', 'update'] 0m3.8s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [157 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9079 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6147 kB] Fetched 15.4 MB in 2s (6621 kB/s) Reading package lists... 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-get', 'update'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following NEW packages will be installed: gcc-14-base The following packages will be upgraded: gcc-13-base libgcc-s1 libidn2-0 libstdc++6 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 999 kB of archives. After this operation, 217 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 gcc-14-base amd64 14-20240201-3 [42.3 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libgcc-s1 amd64 14-20240201-3 [71.6 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libstdc++6 amd64 14-20240201-3 [714 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 gcc-13-base amd64 13.2.0-13 [42.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 999 kB in 0s (11.5 MB/s) Selecting previously unselected package gcc-14-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5223 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14-20240201-3_amd64.deb ... Unpacking gcc-14-base:amd64 (14-20240201-3) ... Setting up gcc-14-base:amd64 (14-20240201-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5228 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14-20240201-3_amd64.deb ... Unpacking libgcc-s1:amd64 (14-20240201-3) over (13.2.0-10) ... Setting up libgcc-s1:amd64 (14-20240201-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5228 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.7-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2) over (2.3.4-1+b2) ... Setting up libidn2-0:amd64 (2.3.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5227 files and directories currently installed.) Preparing to unpack .../libstdc++6_14-20240201-3_amd64.deb ... Unpacking libstdc++6:amd64 (14-20240201-3) over (13.2.0-10) ... Setting up libstdc++6:amd64 (14-20240201-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5227 files and directories currently installed.) Preparing to unpack .../gcc-13-base_13.2.0-13_amd64.deb ... Unpacking gcc-13-base:amd64 (13.2.0-13) over (13.2.0-10) ... Setting up gcc-13-base:amd64 (13.2.0-13) ... Processing triggers for libc-bin (2.37-15~deb13u1) ... 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.7s DUMP: ebee6ef53e8b437d59ec90040ba820e0 - 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.7s INFO: Running scripts post_setup 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_setup_dummy_users'] 0m7.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_setup_dummy_users'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_setup_forbid_home'] 0m7.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_setup_forbid_home'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_setup_minimize'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_setup_minimize'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_setup_zz_backports'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_setup_zz_backports'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-get', 'clean'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-get', 'clean'] 0m7.1s DEBUG: Recording chroot state 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.6s DUMP: install ok installed apt apt 2.7.10 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.83 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-13 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.10 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15~deb13u1 install ok installed libc6:amd64 libc6 2.37-15~deb13u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-1 install ok installed libcap2:amd64 libcap2 1:2.66-4+b2 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.1.4-2 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.3-1 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3+b1 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-3+b1 install ok installed perl-base perl-base 5.38.2-3 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2023d-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg-divert', '--list'] 0m7.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg-divert', '--list'] 0m7.7s INFO: Running scripts is_testable 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/is_testable_uninstallable'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/is_testable_uninstallable'] 0m7.7s INFO: apt-cache does not know about any of the requested packages 0m7.7s INFO: Running scripts pre_test 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_test_exceptions'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_test_exceptions'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_test_root_password'] 0m7.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_test_root_password'] 0m7.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp97__jce4'] 0m8.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp97__jce4'] 0m8.5s DEBUG: No broken symlinks as far as we can find. 0m8.5s INFO: Running scripts pre_install 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_install_database-server'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_install_database-server'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_install_exceptions'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_install_exceptions'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_install_extras'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_install_extras'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp97__jce4'] 0m8.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp97__jce4'] 0m9.3s DEBUG: No broken symlinks as far as we can find. 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-cache', 'policy'] 0m10.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-cache', 'policy'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-cache', 'policy', 'plasmidid'] 0m10.6s DUMP: plasmidid: Installed: (none) Candidate: 1.6.5+dfsg-2 Version table: 1.6.5+dfsg-2 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-cache', 'policy', 'plasmidid'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-get', '-y', 'install', 'plasmidid=1.6.5+dfsg-2'] 4m32.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser adwaita-icon-theme alsa-topology-conf alsa-ucm-conf amap-align apache2-bin aragorn at-spi2-common at-spi2-core bamtools bedtools binutils binutils-common binutils-x86-64-linux-gnu bioperl bioperl-run blends-common blt bowtie bowtie2 bwa bzip2 ca-certificates ca-certificates-java cd-hit circos circos-tools clustalo clustalw cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jdk-headless default-jre default-jre-headless dialign dialign-tx dialign-tx-data dmsetup emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-circos-symbols fonts-cmu fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-droid-fallback fonts-lato fonts-liberation fonts-liberation-sans-narrow fonts-liberation2 fonts-lyx fonts-noto-mono fonts-urw-base35 fsa g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gawk gcc gcc-13 gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu ghostscript graphviz gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme hmmer hyphy-common hyphy-pt ibverbs-providers infernal isympy-common isympy3 java-common javascript-common kalign krb5-locales lagan less libabsl20220623 libace-perl libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libaom3 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargon2-1 libargtable2-0 libarray-compare-perl libasan8 libasound2 libasound2-data libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatomic1 libatspi2.0-0 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbamtools2.5.2 libbinutils libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-eutilities-perl libbio-featureio-perl libbio-perl-perl libbio-perl-run-perl libbio-searchio-hmmer-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libblas3 libblosc1 libbrotli1 libbsd-resource-perl libbsd0 libc-dev-bin libc-devtools libc6-dev libcache-cache-perl libcairo-gobject2 libcairo2 libcapnp-1.0.1 libcapture-tiny-perl libcarp-always-perl libcarp-clan-perl libcbor0.10 libcc1-0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-general-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-dev libcrypt-rc4-perl libcryptsetup12 libctf-nobfd0 libctf0 libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-dumper-simple-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdav1d7 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdconf1 libde265-0 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdevmapper1.02.1 libdigest-perl-md5-perl libdivsufsort3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdynaloader-functions-perl libedit2 libelf1 libencode-locale-perl libencode-perl liberror-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfdisk1 libfido2-1 libfile-basedir-perl libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfont-ttf-perl libfontconfig1 libfontenc1 libfreetype6 libfreezethaw-perl libfribidi0 libgail-common libgail18 libgav1-1 libgcc-13-dev libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgetopt-simple-perl libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgprofng0 libgraph-perl libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgraphviz-perl libgs-common libgs10 libgs10-common libgsl27 libgslcblas0 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1 libheap-perl libheif-plugin-aomenc libheif-plugin-dav1d libheif-plugin-libde265 libheif-plugin-x265 libheif1 libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu72 libidn12 libijs-0.35 libimagequant0 libimport-into-perl libio-all-perl libio-compress-brotli-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjbig2dec0 libjbzip2-java libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-jquery-ui libjson-c5 libjsoncpp25 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 liblist-allutils-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-someutils-xs-perl liblist-utilsby-perl libllvm17 liblmdb0 liblsan0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzo2-2 libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-bezier-perl libmath-derivative-perl libmath-round-perl libmath-spline-perl libmath-vec-perl libmath-vecstat-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpc3 libmpfr6 libmunge2 libmurmurhash2 libnamespace-clean-perl libncbi6 libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnlopt0 libnsl-dev libnsl2 libnspr4 libnss-systemd libnss3 libnuma1 libnumber-format-perl libole-storage-lite-perl libopenjp2-7 libopenmpi3 libpackage-stash-perl libpackage-stash-xs-perl libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-validate-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl5.38 libpixman-1-0 libpmix2 libpng16-16 libpod-coverage-perl libpod-parser-perl libpostscript-perl libpq5 libproc2-0 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl libregexp-common-perl librole-tiny-perl librsvg2-2 librsvg2-common librtmp1 libruby libruby3.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libset-intspan-perl libset-object-perl libset-scalar-perl libsframe1 libsharpyuv0 libsigsegv2 libsm6 libsnappy1v5 libsoap-lite-perl libsort-naturally-perl libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssw0 libstatistics-basic-perl libstatistics-descriptive-perl libstdc++-13-dev libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libsvtav1enc1d1 libswiss-perl libsystemd-shared libsz2 libtask-weaken-perl libtcl8.6 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-pod-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-format-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtree-dagnode-perl libtry-tiny-perl libtsan2 libtype-tiny-perl libtype-tiny-xs-perl libubsan1 libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libvulkan1 libwayland-client0 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libx265-199 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbfile1 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxstring-perl libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyuv0 libz3-4 linux-libc-dev luit lynx lynx-common mafft mailcap manpages manpages-dev maq mariadb-common mash med-config media-types menu mesa-vulkan-drivers mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncbi-tools-bin ncoils netbase ocl-icd-libopencl1 openjdk-17-jdk-headless openjdk-17-jre openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml parallel perl perl-doc perl-modules-5.38 perl-openssl-defaults perl-tk pftools phylip phyml poa poppler-data prank primer3 probalign probcons procps proda prodigal prokka psmisc publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-appdirs python3-attr python3-babel python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-chardet python3-contourpy python3-cssselect python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-et-xmlfile python3-fonttools python3-freetype python3-fs python3-html5lib python3-iniconfig python3-jinja2 python3-joblib python3-kiwisolver python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-psutil python3-pygments python3-pyparsing python3-pytest python3-reportlab python3-rlpycairo python3-scipy python3-simplejson python3-six python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-webencodings python3-yaml python3.11 python3.11-minimal python3.12 python3.12-minimal rake raxml readline-common rpcsvc-proto ruby ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration samtools sensible-utils sgml-base shared-mime-info sim4 spades sysstat systemd systemd-dev systemd-sysv systemd-timesyncd t-coffee tigr-glimmer tk8.6-blt2.5 tm-align trimmomatic ucf unicode-data unzip w3c-sgml-lib wise wise-data x11-common x11-utils xauth xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zip Suggested packages: liblocale-gettext-perl cron quota apache2-doc apache2-suexec-pristine | apache2-suexec-custom binutils-doc gprofng-gui groff-base gmap fasta3 trnascan-se blends-doc blt-demo bowtie-examples bowtie2-examples bzip2-doc clustalx seaview cpp-doc gcc-13-locales cpp-13-doc emboss-doc emboss-test embassy fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-13-multilib gcc-13-doc gawk-doc gcc-multilib make autoconf automake libtool flex bison gdb gcc-doc gcc-13-multilib gdb-x86-64-linux-gnu texlive-binaries gsfonts graphviz-doc hmmer-doc apache2 | lighttpd | httpd libasound2-plugins alsa-utils libdigest-hmac-perl libgssapi-perl libxml-sax-expatxs-perl glibc-doc cups-common libnet-daemon-perl libsql-statement-perl libgd-tools gdbm-l10n low-memory-monitor gpm gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user gvfs libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e libheif-plugin-svtenc libhtml-element-extended-perl libhwloc-contrib-plugins libdb-file-lock-perl libfile-mimeinfo-perl libfile-readbackwards-perl libjs-jquery-ui-docs liblcms2-utils libcrypt-ssleay-perl libscalar-number-perl pciutils pcscd librsvg2-bin libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql lm-sensors libmime-lite-perl libnet-jabber-perl libstdc++-13-doc tcl8.6 tk8.6 libdevel-lexalias-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl man-browser menu-l10n gksu | kde-cli-tools | ktsuss mustang-testdata libvibrant6b ncbi-cn3d ncbi-tools-x11 gnuplot opencl-icd openjdk-17-demo openjdk-17-source libnss-mdns fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass csh fish ksh tcsh zsh libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl debhelper phylip-doc blast2 poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum ncbi-epcr probcons-extra python3-doc python3-venv python-attr-doc dssp fasttree muscle3 python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 python-bottleneck-doc python-cycler-doc python3-genshi python-jinja2-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft gir1.2-gtk-3.0 inkscape ipython3 python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gfortran python3-dev python-openpyxl-doc python-pandas-doc python3-statsmodels python-pil-doc python3-setuptools python-pygments-doc ttf-bitstream-vera python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python-scipy-doc texlive-fonts-extra python-sympy-doc python3-netcdf4 python-tables-doc vitables tix python3-tk-dbg python3.11-venv python3.11-doc binfmt-support python3.12-venv python3.12-doc readline-doc ri ruby-dev bundler cwltool sgml-base-doc isag systemd-container systemd-homed systemd-userdbd systemd-boot systemd-resolved libip4tc2 libqrencode4 libtss2-esys-3.0.2-0 libtss2-mu0 libtss2-rc0 polkitd boxshade t-coffee-examples pymol rasmol wise-doc mesa-utils Recommended packages: blast2 python3-numba The following NEW packages will be installed: adduser adwaita-icon-theme alsa-topology-conf alsa-ucm-conf amap-align apache2-bin aragorn at-spi2-common at-spi2-core bamtools bedtools binutils binutils-common binutils-x86-64-linux-gnu bioperl bioperl-run blends-common blt bowtie bowtie2 bwa bzip2 ca-certificates ca-certificates-java cd-hit circos circos-tools clustalo clustalw cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jdk-headless default-jre default-jre-headless dialign dialign-tx dialign-tx-data dmsetup emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-circos-symbols fonts-cmu fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-droid-fallback fonts-lato fonts-liberation fonts-liberation-sans-narrow fonts-liberation2 fonts-lyx fonts-noto-mono fonts-urw-base35 fsa g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gawk gcc gcc-13 gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu ghostscript graphviz gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme hmmer hyphy-common hyphy-pt ibverbs-providers infernal isympy-common isympy3 java-common javascript-common kalign krb5-locales lagan less libabsl20220623 libace-perl libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libaom3 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargon2-1 libargtable2-0 libarray-compare-perl libasan8 libasound2 libasound2-data libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatomic1 libatspi2.0-0 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbamtools2.5.2 libbinutils libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-eutilities-perl libbio-featureio-perl libbio-perl-perl libbio-perl-run-perl libbio-searchio-hmmer-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libblas3 libblosc1 libbrotli1 libbsd-resource-perl libbsd0 libc-dev-bin libc-devtools libc6-dev libcache-cache-perl libcairo-gobject2 libcairo2 libcapnp-1.0.1 libcapture-tiny-perl libcarp-always-perl libcarp-clan-perl libcbor0.10 libcc1-0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-general-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-dev libcrypt-rc4-perl libcryptsetup12 libctf-nobfd0 libctf0 libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-dumper-simple-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdav1d7 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdconf1 libde265-0 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdevmapper1.02.1 libdigest-perl-md5-perl libdivsufsort3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdynaloader-functions-perl libedit2 libelf1 libencode-locale-perl libencode-perl liberror-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfdisk1 libfido2-1 libfile-basedir-perl libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfont-ttf-perl libfontconfig1 libfontenc1 libfreetype6 libfreezethaw-perl libfribidi0 libgail-common libgail18 libgav1-1 libgcc-13-dev libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgetopt-simple-perl libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgprofng0 libgraph-perl libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgraphviz-perl libgs-common libgs10 libgs10-common libgsl27 libgslcblas0 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1 libheap-perl libheif-plugin-aomenc libheif-plugin-dav1d libheif-plugin-libde265 libheif-plugin-x265 libheif1 libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu72 libidn12 libijs-0.35 libimagequant0 libimport-into-perl libio-all-perl libio-compress-brotli-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjbig2dec0 libjbzip2-java libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-jquery-ui libjson-c5 libjsoncpp25 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 liblist-allutils-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-someutils-xs-perl liblist-utilsby-perl libllvm17 liblmdb0 liblsan0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzo2-2 libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-bezier-perl libmath-derivative-perl libmath-round-perl libmath-spline-perl libmath-vec-perl libmath-vecstat-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpc3 libmpfr6 libmunge2 libmurmurhash2 libnamespace-clean-perl libncbi6 libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnlopt0 libnsl-dev libnsl2 libnspr4 libnss-systemd libnss3 libnuma1 libnumber-format-perl libole-storage-lite-perl libopenjp2-7 libopenmpi3 libpackage-stash-perl libpackage-stash-xs-perl libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-validate-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl5.38 libpixman-1-0 libpmix2 libpng16-16 libpod-coverage-perl libpod-parser-perl libpostscript-perl libpq5 libproc2-0 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl libregexp-common-perl librole-tiny-perl librsvg2-2 librsvg2-common librtmp1 libruby libruby3.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libset-intspan-perl libset-object-perl libset-scalar-perl libsframe1 libsharpyuv0 libsigsegv2 libsm6 libsnappy1v5 libsoap-lite-perl libsort-naturally-perl libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssw0 libstatistics-basic-perl libstatistics-descriptive-perl libstdc++-13-dev libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libsvtav1enc1d1 libswiss-perl libsystemd-shared libsz2 libtask-weaken-perl libtcl8.6 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-pod-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-format-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtree-dagnode-perl libtry-tiny-perl libtsan2 libtype-tiny-perl libtype-tiny-xs-perl libubsan1 libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libvulkan1 libwayland-client0 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libx265-199 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbfile1 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxstring-perl libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyuv0 libz3-4 linux-libc-dev luit lynx lynx-common mafft mailcap manpages manpages-dev maq mariadb-common mash med-config media-types menu mesa-vulkan-drivers mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncbi-tools-bin ncoils netbase ocl-icd-libopencl1 openjdk-17-jdk-headless openjdk-17-jre openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml parallel perl perl-doc perl-modules-5.38 perl-openssl-defaults perl-tk pftools phylip phyml plasmidid poa poppler-data prank primer3 probalign probcons procps proda prodigal prokka psmisc publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-appdirs python3-attr python3-babel python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-chardet python3-contourpy python3-cssselect python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-et-xmlfile python3-fonttools python3-freetype python3-fs python3-html5lib python3-iniconfig python3-jinja2 python3-joblib python3-kiwisolver python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-psutil python3-pygments python3-pyparsing python3-pytest python3-reportlab python3-rlpycairo python3-scipy python3-simplejson python3-six python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-webencodings python3-yaml python3.11 python3.11-minimal python3.12 python3.12-minimal rake raxml readline-common rpcsvc-proto ruby ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration samtools sensible-utils sgml-base shared-mime-info sim4 spades sysstat systemd systemd-dev systemd-sysv systemd-timesyncd t-coffee tigr-glimmer tk8.6-blt2.5 tm-align trimmomatic ucf unicode-data unzip w3c-sgml-lib wise wise-data x11-common x11-utils xauth xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zip 0 upgraded, 766 newly installed, 0 to remove and 0 not upgraded. Need to get 713 MB of archives. After this operation, 3030 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libapparmor1 amd64 3.0.12-1+b2 [41.5 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libargon2-1 amd64 0~20190702+dfsg-4+b1 [21.1 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 dmsetup amd64 2:1.02.185-3 [82.2 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-3 [133 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libjson-c5 amd64 0.17-1 [43.7 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libcryptsetup12 amd64 2:2.6.1-6+b1 [224 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libfdisk1 amd64 2.39.3-6 [202 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libkmod2 amd64 31-1 [59.6 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libsystemd-shared amd64 255.3-1 [1933 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 systemd-dev all 255.3-1 [58.0 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 systemd amd64 255.3-1 [3525 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 systemd-sysv amd64 255.3-1 [48.7 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libdbus-1-3 amd64 1.14.10-4 [203 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 dbus-bin amd64 1.14.10-4 [106 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 dbus-session-bus-common all 1.14.10-4 [79.0 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.5.0-2+b2 [99.4 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 dbus-daemon amd64 1.14.10-4 [184 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 adduser all 3.137 [140 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 dbus-system-bus-common all 1.14.10-4 [80.1 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 dbus amd64 1.14.10-4 [98.3 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.38 all 5.38.2-3 [2899 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 libgdbm6 amd64 1.23-5 [72.5 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4 amd64 1.23-5 [48.3 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libperl5.38 amd64 5.38.2-3 [4275 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.38.2-3 [236 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 libmpfr6 amd64 4.2.1-1 [713 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-3 [69.1 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 gawk amd64 1:5.2.1-2 [673 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 poppler-data all 0.4.12-1 [1601 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amd64 1.20.1-5 [135 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1 [10.7 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 libtirpc3 amd64 1.3.4+ds-1 [82.1 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.45.0-1 [894 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.7-2 [1822 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.7-2 [590 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:52 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.1-2 [807 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.1-2 [2185 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 less amd64 590-2 [131 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 bzip2 amd64 1.0.8-5+b2 [40.5 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.1.4-2 [1426 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20230311 [153 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-2+b1 [43.1 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 krb5-locales all 1.20.1-5 [63.1 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 libnss-systemd amd64 255.3-1 [187 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 libpam-systemd amd64 255.3-1 [258 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 manpages all 6.05.01-1 [1344 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.11.8-1 [125 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20230828-1 [93.1 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 libcbor0.10 amd64 0.10.2-1.1 [27.8 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 libfido2-1 amd64 1.14.0-1 [77.4 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 openssh-client amd64 1:9.6p1-3 [975 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 systemd-timesyncd amd64 255.3-1 [71.6 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 xz-utils amd64 5.4.5-0.3 [503 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [307 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0 amd64 2.78.3-2 [1452 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:83 http://deb.debian.org/debian trixie/main amd64 shared-mime-info amd64 2.4-1 [751 kB] Get:84 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 libpng16-16 amd64 1.6.40-3 [276 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.19-1 [41.4 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:88 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4 [170 kB] Get:89 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.3.2-0.3 [107 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.3.2-0.3 [308 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.10+dfsg-3 [138 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 gtk-update-icon-cache amd64 3.24.41-1 [45.7 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 adwaita-icon-theme all 45.0-2 [739 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 alsa-topology-conf all 1.2.5.1-2 [15.2 kB] Get:96 http://deb.debian.org/debian trixie/main amd64 libasound2-data all 1.2.10-3 [20.7 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 libasound2 amd64 1.2.10-3 [368 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 alsa-ucm-conf all 1.2.10-1 [60.3 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 amap-align amd64 2.2+git20080214.600fc29+dfsg-2 [132 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 libapr1 amd64 1.7.2-3+b2 [102 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libaprutil1 amd64 1.6.3-1+b1 [88.4 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.3-1+b1 [13.9 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 libaprutil1-ldap amd64 1.6.3-1+b1 [12.1 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 libpsl5 amd64 0.21.2-1+b1 [59.1 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:111 http://deb.debian.org/debian trixie/main amd64 libssh2-1 amd64 1.11.0-4 [215 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 libcurl4 amd64 8.5.0-2 [427 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 libjansson4 amd64 2.14-2+b2 [39.9 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 liblua5.3-0 amd64 5.3.6-2 [123 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 apache2-bin amd64 2.4.58-1+b1 [1375 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 aragorn amd64 1.2.41-2 [88.0 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 at-spi2-common all 2.50.0-1 [163 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:124 http://deb.debian.org/debian trixie/main amd64 libxi6 amd64 2:1.8-1+b1 [84.2 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 libatspi2.0-0 amd64 2.50.0-1+b1 [74.2 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23 [252 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 libxtst6 amd64 2:1.2.3-1.1 [28.0 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 dbus-user-session amd64 1.14.10-4 [78.9 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 libdconf1 amd64 0.40.0-4+b1 [41.8 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 dconf-service amd64 0.40.0-4+b1 [32.5 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 dconf-gsettings-backend amd64 0.40.0-4+b1 [28.7 kB] Get:132 http://deb.debian.org/debian trixie/main amd64 gsettings-desktop-schemas all 45.0-2 [645 kB] Get:133 http://deb.debian.org/debian trixie/main amd64 at-spi2-core amd64 2.50.0-1+b1 [59.8 kB] Get:134 http://deb.debian.org/debian trixie/main amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-5 [159 kB] Get:135 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 bamtools amd64 2.5.2+dfsg-5 [206 kB] Get:137 http://deb.debian.org/debian trixie/main amd64 bedtools amd64 2.31.1+dfsg-2 [678 kB] Get:138 http://deb.debian.org/debian trixie/main amd64 binutils-common amd64 2.42-2 [2537 kB] Get:139 http://deb.debian.org/debian trixie/main amd64 libsframe1 amd64 2.42-2 [75.5 kB] Get:140 http://deb.debian.org/debian trixie/main amd64 libbinutils amd64 2.42-2 [520 kB] Get:141 http://deb.debian.org/debian trixie/main amd64 libctf-nobfd0 amd64 2.42-2 [151 kB] Get:142 http://deb.debian.org/debian trixie/main amd64 libctf0 amd64 2.42-2 [87.0 kB] Get:143 http://deb.debian.org/debian trixie/main amd64 libgprofng0 amd64 2.42-2 [771 kB] Get:144 http://deb.debian.org/debian trixie/main amd64 binutils-x86-64-linux-gnu amd64 2.42-2 [2209 kB] Get:145 http://deb.debian.org/debian trixie/main amd64 binutils amd64 2.42-2 [80.4 kB] Get:146 http://deb.debian.org/debian trixie/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:147 http://deb.debian.org/debian trixie/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:148 http://deb.debian.org/debian trixie/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:149 http://deb.debian.org/debian trixie/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:150 http://deb.debian.org/debian trixie/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:151 http://deb.debian.org/debian trixie/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:152 http://deb.debian.org/debian trixie/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get:153 http://deb.debian.org/debian trixie/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:154 http://deb.debian.org/debian trixie/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:155 http://deb.debian.org/debian trixie/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:156 http://deb.debian.org/debian trixie/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get:157 http://deb.debian.org/debian trixie/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:158 http://deb.debian.org/debian trixie/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:159 http://deb.debian.org/debian trixie/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:160 http://deb.debian.org/debian trixie/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get:161 http://deb.debian.org/debian trixie/main amd64 bioperl all 1.7.8-1 [246 kB] Get:162 http://deb.debian.org/debian trixie/main amd64 libio-pty-perl amd64 1:1.20-1 [34.1 kB] Get:163 http://deb.debian.org/debian trixie/main amd64 libipc-run-perl all 20231003.0-1 [102 kB] Get:164 http://deb.debian.org/debian trixie/main amd64 libfile-sort-perl all 1.01-3 [21.3 kB] Get:165 http://deb.debian.org/debian trixie/main amd64 libbio-perl-run-perl all 1.7.3-9 [605 kB] Get:166 http://deb.debian.org/debian trixie/main amd64 clustalw amd64 2.1+lgpl-7 [282 kB] Get:167 http://deb.debian.org/debian trixie/main amd64 libbio-tools-run-alignment-clustalw-perl all 1.7.4-3 [24.6 kB] Get:168 http://deb.debian.org/debian trixie/main amd64 libfile-slurp-tiny-perl all 0.004-2 [7592 B] Get:169 http://deb.debian.org/debian trixie/main amd64 libtree-dagnode-perl all 1.32-1 [61.7 kB] Get:170 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.25-1 [91.9 kB] Get:171 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:172 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:173 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:174 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:175 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:176 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.81-1+b1 [99.0 kB] Get:177 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:178 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.46-1+b1 [13.8 kB] Get:179 http://deb.debian.org/debian trixie/main amd64 libencode-perl amd64 3.20-1+b1 [1402 kB] Get:180 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:181 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:182 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:183 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:184 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:185 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:186 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-1 [338 kB] Get:187 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:188 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:189 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.11-1 [10.5 kB] Get:190 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:191 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:192 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.73-1 [182 kB] Get:193 http://deb.debian.org/debian trixie/main amd64 libxml-parser-perl amd64 2.47-1+b1 [199 kB] Get:194 http://deb.debian.org/debian trixie/main amd64 libxml-perl all 0.08-4 [93.0 kB] Get:195 http://deb.debian.org/debian trixie/main amd64 libxml-regexp-perl all 0.04-1.1 [7500 B] Get:196 http://deb.debian.org/debian trixie/main amd64 libxml-dom-perl all 1.46-2 [152 kB] Get:197 http://deb.debian.org/debian trixie/main amd64 libxml-xpathengine-perl all 0.14-2 [33.5 kB] Get:198 http://deb.debian.org/debian trixie/main amd64 libxml-dom-xpath-perl all 0.14-4 [9352 B] Get:199 http://deb.debian.org/debian trixie/main amd64 libbio-featureio-perl all 1.6.905-2 [53.2 kB] Get:200 http://deb.debian.org/debian trixie/main amd64 libxml-twig-perl all 1:3.52-2 [181 kB] Get:201 http://deb.debian.org/debian trixie/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get:202 http://deb.debian.org/debian trixie/main amd64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get:203 http://deb.debian.org/debian trixie/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:204 http://deb.debian.org/debian trixie/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:205 http://deb.debian.org/debian trixie/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:206 http://deb.debian.org/debian trixie/main amd64 libbio-cluster-perl all 1.7.3-6 [53.3 kB] Get:207 http://deb.debian.org/debian trixie/main amd64 libtest-requiresinternet-perl all 0.05-4 [6864 B] Get:208 http://deb.debian.org/debian trixie/main amd64 libbio-asn1-entrezgene-perl all 1.730-2 [48.6 kB] Get:209 http://deb.debian.org/debian trixie/main amd64 libtext-csv-perl all 2.04-1 [112 kB] Get:210 http://deb.debian.org/debian trixie/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b2 [313 kB] Get:211 http://deb.debian.org/debian trixie/main amd64 libxml-sax-expat-perl all 0.51-2 [11.1 kB] Get:212 http://deb.debian.org/debian trixie/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:213 http://deb.debian.org/debian trixie/main amd64 libbio-eutilities-perl all 1.77-2 [124 kB] Get:214 http://deb.debian.org/debian trixie/main amd64 libbio-tools-run-remoteblast-perl all 1.7.3-3 [17.5 kB] Get:215 http://deb.debian.org/debian trixie/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:216 http://deb.debian.org/debian trixie/main amd64 libfcgi0ldbl amd64 2.4.2-2 [26.1 kB] Get:217 http://deb.debian.org/debian trixie/main amd64 libfcgi-perl amd64 0.82+ds-2+b1 [25.4 kB] Get:218 http://deb.debian.org/debian trixie/main amd64 libhttp-daemon-perl all 6.16-1 [23.5 kB] Get:219 http://deb.debian.org/debian trixie/main amd64 libio-sessiondata-perl all 1.03-3 [6316 B] Get:220 http://deb.debian.org/debian trixie/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:221 http://deb.debian.org/debian trixie/main amd64 libconvert-binhex-perl all 1.125-3 [27.4 kB] Get:222 http://deb.debian.org/debian trixie/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get:223 http://deb.debian.org/debian trixie/main amd64 libmailtools-perl all 2.21-2 [95.6 kB] Get:224 http://deb.debian.org/debian trixie/main amd64 libmime-tools-perl all 5.512-1 [201 kB] Get:225 http://deb.debian.org/debian trixie/main amd64 libtask-weaken-perl all 1.06-2 [9364 B] Get:226 http://deb.debian.org/debian trixie/main amd64 libsoap-lite-perl all 1.27-3 [239 kB] Get:227 http://deb.debian.org/debian trixie/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get:228 http://deb.debian.org/debian trixie/main amd64 java-common all 0.75 [6640 B] Get:229 http://deb.debian.org/debian trixie/main amd64 libavahi-common-data amd64 0.8-13+b1 [111 kB] Get:230 http://deb.debian.org/debian trixie/main amd64 libavahi-common3 amd64 0.8-13+b1 [43.3 kB] Get:231 http://deb.debian.org/debian trixie/main amd64 libavahi-client3 amd64 0.8-13+b1 [47.1 kB] Get:232 http://deb.debian.org/debian trixie/main amd64 libcups2 amd64 2.4.7-1+b1 [247 kB] Get:233 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:234 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b1 [439 kB] Get:235 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:236 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:237 http://deb.debian.org/debian trixie/main amd64 fonts-liberation all 1:2.1.5-3 [1475 kB] Get:238 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.4-1+b2 [23.3 kB] Get:239 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:240 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:241 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get:242 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.14.2-6+b1 [316 kB] Get:243 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.14.2-6+b1 [388 kB] Get:244 http://deb.debian.org/debian trixie/main amd64 libnspr4 amd64 2:4.35-1.1 [108 kB] Get:245 http://deb.debian.org/debian trixie/main amd64 libnss3 amd64 2:3.96.1-1 [1365 kB] Get:246 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:247 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2 [2213 kB] Get:248 http://deb.debian.org/debian trixie/main amd64 libpcsclite1 amd64 2.0.1-1 [50.8 kB] Get:249 http://deb.debian.org/debian trixie/main amd64 openjdk-17-jre-headless amd64 17.0.10+7-1 [43.7 MB] Get:250 http://deb.debian.org/debian trixie/main amd64 default-jre-headless amd64 2:1.17-75 [3068 B] Get:251 http://deb.debian.org/debian trixie/main amd64 openjdk-17-jdk-headless amd64 17.0.10+7-1 [71.4 MB] Get:252 http://deb.debian.org/debian trixie/main amd64 default-jdk-headless amd64 2:1.17-75 [1108 B] Get:253 http://deb.debian.org/debian trixie/main amd64 libcurl3-gnutls amd64 8.5.0-2 [419 kB] Get:254 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14-20240201-3 [136 kB] Get:255 http://deb.debian.org/debian trixie/main amd64 hyphy-common all 2.5.59+dfsg-1 [602 kB] Get:256 http://deb.debian.org/debian trixie/main amd64 hyphy-pt amd64 2.5.59+dfsg-1 [1553 kB] Get:257 http://deb.debian.org/debian trixie/main amd64 bioperl-run all 1.7.3-9 [40.6 kB] Get:258 http://deb.debian.org/debian trixie/main amd64 menu amd64 2.1.50 [346 kB] Get:259 http://deb.debian.org/debian trixie/main amd64 blends-common all 0.7.6 [14.9 kB] Get:260 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get:261 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:262 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:263 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:264 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get:265 http://deb.debian.org/debian trixie/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get:266 http://deb.debian.org/debian trixie/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get:267 http://deb.debian.org/debian trixie/main amd64 bowtie amd64 1.3.1-3 [1627 kB] Get:268 http://deb.debian.org/debian trixie/main amd64 bowtie2 amd64 2.5.2-1 [1438 kB] Get:269 http://deb.debian.org/debian trixie/main amd64 bwa amd64 0.7.17-7+b3 [212 kB] Get:270 http://deb.debian.org/debian trixie/main amd64 cd-hit amd64 4.8.1-4 [522 kB] Get:271 http://deb.debian.org/debian trixie/main amd64 fonts-circos-symbols all 0.69.9+dfsg-2 [46.7 kB] Get:272 http://deb.debian.org/debian trixie/main amd64 fonts-cmu all 0.7.0-5 [4892 kB] Get:273 http://deb.debian.org/debian trixie/main amd64 libregexp-common-perl all 2017060201-3 [175 kB] Get:274 http://deb.debian.org/debian trixie/main amd64 libcarp-always-perl all 0.16-1 [9620 B] Get:275 http://deb.debian.org/debian trixie/main amd64 libconfig-general-perl all 2.65-2 [71.8 kB] Get:276 http://deb.debian.org/debian trixie/main amd64 libdata-dumper-simple-perl all 0.11-7 [12.5 kB] Get:277 http://deb.debian.org/debian trixie/main amd64 libaom3 amd64 3.8.1-1 [1868 kB] Get:278 http://deb.debian.org/debian trixie/main amd64 libdav1d7 amd64 1.3.0-2+b1 [543 kB] Get:279 http://deb.debian.org/debian trixie/main amd64 libabsl20220623 amd64 20220623.1-3 [393 kB] Get:280 http://deb.debian.org/debian trixie/main amd64 libgav1-1 amd64 0.18.0-1+b1 [332 kB] Get:281 http://deb.debian.org/debian trixie/main amd64 librav1e0 amd64 0.6.6-7 [896 kB] Get:282 http://deb.debian.org/debian trixie/main amd64 libsvtav1enc1d1 amd64 1.7.0+dfsg-2 [2169 kB] Get:283 http://deb.debian.org/debian trixie/main amd64 libyuv0 amd64 0.0~git202401110.af6ac82-1 [169 kB] Get:284 http://deb.debian.org/debian trixie/main amd64 libavif16 amd64 1.0.3-1 [105 kB] Get:285 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-dav1d amd64 1.17.6-1 [9592 B] Get:286 http://deb.debian.org/debian trixie/main amd64 libde265-0 amd64 1.0.15-1 [187 kB] Get:287 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-libde265 amd64 1.17.6-1 [12.9 kB] Get:288 http://deb.debian.org/debian trixie/main amd64 libheif1 amd64 1.17.6-1 [284 kB] Get:289 http://deb.debian.org/debian trixie/main amd64 libxpm4 amd64 1:3.5.17-1 [55.8 kB] Get:290 http://deb.debian.org/debian trixie/main amd64 libgd3 amd64 2.3.3-9+b1 [125 kB] Get:291 http://deb.debian.org/debian trixie/main amd64 libgd-perl amd64 2.78-1+b1 [131 kB] Get:292 http://deb.debian.org/debian trixie/main amd64 libgetopt-simple-perl all 1.52-7 [15.5 kB] Get:293 http://deb.debian.org/debian trixie/main amd64 libmath-bezier-perl all 0.01-4 [7032 B] Get:294 http://deb.debian.org/debian trixie/main amd64 libmath-round-perl all 0.08-1 [9172 B] Get:295 http://deb.debian.org/debian trixie/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b2 [10.7 kB] Get:296 http://deb.debian.org/debian trixie/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:297 http://deb.debian.org/debian trixie/main amd64 libdevel-callchecker-perl amd64 0.008-2+b1 [15.1 kB] Get:298 http://deb.debian.org/debian trixie/main amd64 libparams-classify-perl amd64 0.015-2+b2 [22.4 kB] Get:299 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:300 http://deb.debian.org/debian trixie/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:301 http://deb.debian.org/debian trixie/main amd64 libparams-validate-perl amd64 1.31-2+b1 [63.6 kB] Get:302 http://deb.debian.org/debian trixie/main amd64 libreadonly-perl all 2.050-3 [23.1 kB] Get:303 http://deb.debian.org/debian trixie/main amd64 libset-intspan-perl all 1.19-3 [25.3 kB] Get:304 http://deb.debian.org/debian trixie/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:305 http://deb.debian.org/debian trixie/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:306 http://deb.debian.org/debian trixie/main amd64 liblist-allutils-perl all 0.19-1 [42.0 kB] Get:307 http://deb.debian.org/debian trixie/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:308 http://deb.debian.org/debian trixie/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:309 http://deb.debian.org/debian trixie/main amd64 libmath-vec-perl all 1.01-5 [17.1 kB] Get:310 http://deb.debian.org/debian trixie/main amd64 libspiffy-perl all 0.46-1 [25.7 kB] Get:311 http://deb.debian.org/debian trixie/main amd64 libio-all-perl all 0.87-2 [67.3 kB] Get:312 http://deb.debian.org/debian trixie/main amd64 libmath-vecstat-perl all 0.08-3 [8408 B] Get:313 http://deb.debian.org/debian trixie/main amd64 libgraphics-colornames-perl all 3.5.0-3 [32.1 kB] Get:314 http://deb.debian.org/debian trixie/main amd64 libgraphics-colorobject-perl all 0.5.0-10.1 [28.1 kB] Get:315 http://deb.debian.org/debian trixie/main amd64 libtext-format-perl all 0.62-1 [22.7 kB] Get:316 http://deb.debian.org/debian trixie/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:317 http://deb.debian.org/debian trixie/main amd64 libnumber-format-perl all 1.76-1 [29.4 kB] Get:318 http://deb.debian.org/debian trixie/main amd64 libstatistics-basic-perl all 1.6611-3 [61.5 kB] Get:319 http://deb.debian.org/debian trixie/main amd64 libsvg-perl all 2.87-1 [64.3 kB] Get:320 http://deb.debian.org/debian trixie/main amd64 circos all 0.69.9+dfsg-2 [14.0 MB] Get:321 http://deb.debian.org/debian trixie/main amd64 circos-tools all 0.23-1 [18.7 MB] Get:322 http://deb.debian.org/debian trixie/main amd64 libargtable2-0 amd64 13-1.1 [17.9 kB] Get:323 http://deb.debian.org/debian trixie/main amd64 clustalo amd64 1.2.4-8 [267 kB] Get:324 http://deb.debian.org/debian trixie/main amd64 libisl23 amd64 0.26-3+b2 [652 kB] Get:325 http://deb.debian.org/debian trixie/main amd64 libmpc3 amd64 1.3.1-1+b2 [52.1 kB] Get:326 http://deb.debian.org/debian trixie/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-13 [10.3 MB] Get:327 http://deb.debian.org/debian trixie/main amd64 cpp-13 amd64 13.2.0-13 [1276 B] Get:328 http://deb.debian.org/debian trixie/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7 [4724 B] Get:329 http://deb.debian.org/debian trixie/main amd64 cpp amd64 4:13.2.0-7 [1564 B] Get:330 http://deb.debian.org/debian trixie/main amd64 libgtk2.0-common all 2.24.33-3 [2659 kB] Get:331 http://deb.debian.org/debian trixie/main amd64 libatk1.0-0 amd64 2.50.0-1+b1 [50.1 kB] Get:332 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:333 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:334 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:335 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.0-1+b1 [531 kB] Get:336 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.14.2-6+b1 [462 kB] Get:337 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:338 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:339 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get:340 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get:341 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [215 kB] Get:342 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [47.3 kB] Get:343 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [35.1 kB] Get:344 http://deb.debian.org/debian trixie/main amd64 libxcomposite1 amd64 1:0.4.5-1 [16.6 kB] Get:345 http://deb.debian.org/debian trixie/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get:346 http://deb.debian.org/debian trixie/main amd64 libxcursor1 amd64 1:1.2.1-1 [40.9 kB] Get:347 http://deb.debian.org/debian trixie/main amd64 libxdamage1 amd64 1:1.1.6-1 [15.1 kB] Get:348 http://deb.debian.org/debian trixie/main amd64 libxinerama1 amd64 2:1.1.4-3 [17.8 kB] Get:349 http://deb.debian.org/debian trixie/main amd64 libxrandr2 amd64 2:1.5.2-2+b1 [39.2 kB] Get:350 http://deb.debian.org/debian trixie/main amd64 libgtk2.0-0 amd64 2.24.33-3 [1816 kB] Get:351 http://deb.debian.org/debian trixie/main amd64 libglvnd0 amd64 1.7.0-1 [51.3 kB] Get:352 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.120-1 [7620 B] Get:353 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.120-1 [38.3 kB] Get:354 http://deb.debian.org/debian trixie/main amd64 libglapi-mesa amd64 23.3.4-1 [35.8 kB] Get:355 http://deb.debian.org/debian trixie/main amd64 libx11-xcb1 amd64 2:1.8.7-1 [232 kB] Get:356 http://deb.debian.org/debian trixie/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get:357 http://deb.debian.org/debian trixie/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get:358 http://deb.debian.org/debian trixie/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get:359 http://deb.debian.org/debian trixie/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get:360 http://deb.debian.org/debian trixie/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Get:361 http://deb.debian.org/debian trixie/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get:362 http://deb.debian.org/debian trixie/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get:363 http://deb.debian.org/debian trixie/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:364 http://deb.debian.org/debian trixie/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:365 http://deb.debian.org/debian trixie/main amd64 libvulkan1 amd64 1.3.275.0-1 [124 kB] Get:366 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.120-1 [21.4 kB] Get:367 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3 [51.6 kB] Get:368 http://deb.debian.org/debian trixie/main amd64 libdrm-intel1 amd64 2.4.120-1 [62.6 kB] Get:369 http://deb.debian.org/debian trixie/main amd64 libdrm-nouveau2 amd64 2.4.120-1 [19.3 kB] Get:370 http://deb.debian.org/debian trixie/main amd64 libdrm-radeon1 amd64 2.4.120-1 [22.1 kB] Get:371 http://deb.debian.org/debian trixie/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] Get:372 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:373 http://deb.debian.org/debian trixie/main amd64 libllvm17 amd64 1:17.0.6-5 [23.7 MB] Get:374 http://deb.debian.org/debian trixie/main amd64 libsensors-config all 1:3.6.0-8 [14.4 kB] Get:375 http://deb.debian.org/debian trixie/main amd64 libsensors5 amd64 1:3.6.0-8 [34.4 kB] Get:376 http://deb.debian.org/debian trixie/main amd64 libgl1-mesa-dri amd64 23.3.4-1 [8141 kB] Get:377 http://deb.debian.org/debian trixie/main amd64 libglx-mesa0 amd64 23.3.4-1 [150 kB] Get:378 http://deb.debian.org/debian trixie/main amd64 libglx0 amd64 1.7.0-1 [34.7 kB] Get:379 http://deb.debian.org/debian trixie/main amd64 libgl1 amd64 1.7.0-1 [89.7 kB] Get:380 http://deb.debian.org/debian trixie/main amd64 libgif7 amd64 5.2.1-2.5 [46.9 kB] Get:381 http://deb.debian.org/debian trixie/main amd64 openjdk-17-jre amd64 17.0.10+7-1 [184 kB] Get:382 http://deb.debian.org/debian trixie/main amd64 default-jre amd64 2:1.17-75 [1056 B] Get:383 http://deb.debian.org/debian trixie/main amd64 dialign amd64 2.2.1-11 [139 kB] Get:384 http://deb.debian.org/debian trixie/main amd64 dialign-tx-data all 1.0.2-14 [874 kB] Get:385 http://deb.debian.org/debian trixie/main amd64 dialign-tx amd64 1.0.2-14+b1 [86.6 kB] Get:386 http://deb.debian.org/debian trixie/main amd64 libhpdf-2.3.0 amd64 2.3.0+dfsg-1+b1 [349 kB] Get:387 http://deb.debian.org/debian trixie/main amd64 mysql-common all 5.8+1.1.0 [6636 B] Get:388 http://deb.debian.org/debian trixie/main amd64 mariadb-common all 1:10.11.6-2 [25.2 kB] Get:389 http://deb.debian.org/debian trixie/main amd64 libmariadb3 amd64 1:10.11.6-2 [174 kB] Get:390 http://deb.debian.org/debian trixie/main amd64 libpq5 amd64 16.1-1+b1 [215 kB] Get:391 http://deb.debian.org/debian trixie/main amd64 emboss-lib amd64 6.6.0+dfsg-12 [2871 kB] Get:392 http://deb.debian.org/debian trixie/main amd64 emboss-data all 6.6.0+dfsg-12 [61.1 MB] Get:393 http://deb.debian.org/debian trixie/main amd64 emboss amd64 6.6.0+dfsg-12 [1069 kB] Get:394 http://deb.debian.org/debian trixie/main amd64 exonerate amd64 2.4.0-5 [1616 kB] Get:395 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-extra all 2.37-8 [1792 kB] Get:396 http://deb.debian.org/debian trixie/main amd64 fonts-liberation-sans-narrow all 1:1.07.6-4 [182 kB] Get:397 http://deb.debian.org/debian trixie/main amd64 fonts-liberation2 all 1:2.1.5-3 [6412 B] Get:398 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.0~RC1-2 [187 kB] Get:399 http://deb.debian.org/debian trixie/main amd64 fonts-noto-mono all 20201225-2 [398 kB] Get:400 http://deb.debian.org/debian trixie/main amd64 mummer amd64 3.23+dfsg-8 [662 kB] Get:401 http://deb.debian.org/debian trixie/main amd64 fsa amd64 1.15.9+dfsg-6 [700 kB] Get:402 http://deb.debian.org/debian trixie/main amd64 libcc1-0 amd64 14-20240201-3 [42.2 kB] Get:403 http://deb.debian.org/debian trixie/main amd64 libitm1 amd64 14-20240201-3 [25.8 kB] Get:404 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14-20240201-3 [9292 B] Get:405 http://deb.debian.org/debian trixie/main amd64 libasan8 amd64 14-20240201-3 [2721 kB] Get:406 http://deb.debian.org/debian trixie/main amd64 liblsan0 amd64 14-20240201-3 [1199 kB] Get:407 http://deb.debian.org/debian trixie/main amd64 libtsan2 amd64 14-20240201-3 [2454 kB] Get:408 http://deb.debian.org/debian trixie/main amd64 libubsan1 amd64 14-20240201-3 [1070 kB] Get:409 http://deb.debian.org/debian trixie/main amd64 libhwasan0 amd64 14-20240201-3 [1484 kB] Get:410 http://deb.debian.org/debian trixie/main amd64 libquadmath0 amd64 14-20240201-3 [147 kB] Get:411 http://deb.debian.org/debian trixie/main amd64 libgcc-13-dev amd64 13.2.0-13 [2538 kB] Get:412 http://deb.debian.org/debian trixie/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-13 [19.8 MB] Get:413 http://deb.debian.org/debian trixie/main amd64 gcc-13 amd64 13.2.0-13 [475 kB] Get:414 http://deb.debian.org/debian trixie/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7 [1440 B] Get:415 http://deb.debian.org/debian trixie/main amd64 gcc amd64 4:13.2.0-7 [5152 B] Get:416 http://deb.debian.org/debian trixie/main amd64 libc-dev-bin amd64 2.37-15~deb13u1 [47.0 kB] Get:417 http://deb.debian.org/debian trixie/main amd64 linux-libc-dev all 6.6.13-1 [2229 kB] Get:418 http://deb.debian.org/debian trixie/main amd64 libcrypt-dev amd64 1:4.4.36-4 [119 kB] Get:419 http://deb.debian.org/debian trixie/main amd64 libtirpc-dev amd64 1.3.4+ds-1 [188 kB] Get:420 http://deb.debian.org/debian trixie/main amd64 libnsl-dev amd64 1.3.0-3 [66.9 kB] Get:421 http://deb.debian.org/debian trixie/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:422 http://deb.debian.org/debian trixie/main amd64 libc6-dev amd64 2.37-15~deb13u1 [1906 kB] Get:423 http://deb.debian.org/debian trixie/main amd64 libstdc++-13-dev amd64 13.2.0-13 [2208 kB] Get:424 http://deb.debian.org/debian trixie/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-13 [11.2 MB] Get:425 http://deb.debian.org/debian trixie/main amd64 g++-13 amd64 13.2.0-13 [14.3 kB] Get:426 http://deb.debian.org/debian trixie/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7 [1200 B] Get:427 http://deb.debian.org/debian trixie/main amd64 g++ amd64 4:13.2.0-7 [1348 B] Get:428 http://deb.debian.org/debian trixie/main amd64 libgs-common all 10.02.1~dfsg-3 [147 kB] Get:429 http://deb.debian.org/debian trixie/main amd64 libgs10-common all 10.02.1~dfsg-3 [474 kB] Get:430 http://deb.debian.org/debian trixie/main amd64 libidn12 amd64 1.42-1 [81.4 kB] Get:431 http://deb.debian.org/debian trixie/main amd64 libijs-0.35 amd64 0.35-15.1 [14.8 kB] Get:432 http://deb.debian.org/debian trixie/main amd64 libjbig2dec0 amd64 0.20-1 [64.0 kB] Get:433 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b2 [190 kB] Get:434 http://deb.debian.org/debian trixie/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get:435 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:436 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:437 http://deb.debian.org/debian trixie/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get:438 http://deb.debian.org/debian trixie/main amd64 libgs10 amd64 10.02.1~dfsg-3 [2502 kB] Get:439 http://deb.debian.org/debian trixie/main amd64 ghostscript amd64 10.02.1~dfsg-3 [49.9 kB] Get:440 http://deb.debian.org/debian trixie/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get:441 http://deb.debian.org/debian trixie/main amd64 libcdt5 amd64 2.42.2-8 [39.4 kB] Get:442 http://deb.debian.org/debian trixie/main amd64 libcgraph6 amd64 2.42.2-8 [63.2 kB] Get:443 http://deb.debian.org/debian trixie/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-5+b1 [160 kB] Get:444 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.4.7-7 [393 kB] Get:445 http://deb.debian.org/debian trixie/main amd64 libpathplan4 amd64 2.42.2-8 [41.8 kB] Get:446 http://deb.debian.org/debian trixie/main amd64 libgvc6 amd64 2.42.2-8 [683 kB] Get:447 http://deb.debian.org/debian trixie/main amd64 libgvpr2 amd64 2.42.2-8 [189 kB] Get:448 http://deb.debian.org/debian trixie/main amd64 liblab-gamut1 amd64 2.42.2-8 [198 kB] Get:449 http://deb.debian.org/debian trixie/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB] Get:450 http://deb.debian.org/debian trixie/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB] Get:451 http://deb.debian.org/debian trixie/main amd64 graphviz amd64 2.42.2-8 [614 kB] Get:452 http://deb.debian.org/debian trixie/main amd64 libdivsufsort3 amd64 2.0.1-5 [44.7 kB] Get:453 http://deb.debian.org/debian trixie/main amd64 hmmer amd64 3.4+dfsg-2 [1062 kB] Get:454 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-0.3 [59.0 kB] Get:455 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-0.3 [181 kB] Get:456 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 48.0-1.1 [61.2 kB] Get:457 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 48.0-1.1 [340 kB] Get:458 http://deb.debian.org/debian trixie/main amd64 infernal amd64 1.1.5-2 [5914 kB] Get:459 http://deb.debian.org/debian trixie/main amd64 isympy-common all 1.12-7 [234 kB] Get:460 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:461 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.12-7 [3869 kB] Get:462 http://deb.debian.org/debian trixie/main amd64 isympy3 all 1.12-7 [6164 B] Get:463 http://deb.debian.org/debian trixie/main amd64 javascript-common all 11+nmu1 [6260 B] Get:464 http://deb.debian.org/debian trixie/main amd64 kalign amd64 1:3.3.5-1 [132 kB] Get:465 http://deb.debian.org/debian trixie/main amd64 lagan amd64 2.0-9 [184 kB] Get:466 http://deb.debian.org/debian trixie/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get:467 http://deb.debian.org/debian trixie/main amd64 libipc-sharelite-perl amd64 0.17-5+b1 [23.1 kB] Get:468 http://deb.debian.org/debian trixie/main amd64 libcache-cache-perl all 1.08-3 [63.4 kB] Get:469 http://deb.debian.org/debian trixie/main amd64 libace-perl amd64 1.92-11+b3 [273 kB] Get:470 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.2-1 [23.4 kB] Get:471 http://deb.debian.org/debian trixie/main amd64 libalgorithm-diff-xs-perl amd64 0.04-8+b2 [11.4 kB] Get:472 http://deb.debian.org/debian trixie/main amd64 libalgorithm-munkres-perl all 0.08-5 [11.3 kB] Get:473 http://deb.debian.org/debian trixie/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get:474 http://deb.debian.org/debian trixie/main amd64 libapache2-mod-perl2 amd64 2.0.13-1+b1 [808 kB] Get:475 http://deb.debian.org/debian trixie/main amd64 libdbi-perl amd64 1.643-4+b1 [755 kB] Get:476 http://deb.debian.org/debian trixie/main amd64 libapache-dbi-perl all 1.12-3 [48.5 kB] Get:477 http://deb.debian.org/debian trixie/main amd64 libapache2-reload-perl all 0.14-1 [16.2 kB] Get:478 http://deb.debian.org/debian trixie/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:479 http://deb.debian.org/debian trixie/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b2 [36.3 kB] Get:480 http://deb.debian.org/debian trixie/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:481 http://deb.debian.org/debian trixie/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:482 http://deb.debian.org/debian trixie/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:483 http://deb.debian.org/debian trixie/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:484 http://deb.debian.org/debian trixie/main amd64 libexporter-tiny-perl all 1.006002-1 [38.7 kB] Get:485 http://deb.debian.org/debian trixie/main amd64 libtype-tiny-perl all 2.004000-1 [357 kB] Get:486 http://deb.debian.org/debian trixie/main amd64 libarray-compare-perl all 3.0.8-1 [14.9 kB] Get:487 http://deb.debian.org/debian trixie/main amd64 libatk-bridge2.0-0 amd64 2.50.0-1+b1 [65.7 kB] Get:488 http://deb.debian.org/debian trixie/main amd64 libxcb-shape0 amd64 1.15-1 [106 kB] Get:489 http://deb.debian.org/debian trixie/main amd64 libxkbfile1 amd64 1:1.1.0-1 [75.2 kB] Get:490 http://deb.debian.org/debian trixie/main amd64 libxmuu1 amd64 2:1.1.3-3 [23.9 kB] Get:491 http://deb.debian.org/debian trixie/main amd64 libxv1 amd64 2:1.0.11-1.1 [24.8 kB] Get:492 http://deb.debian.org/debian trixie/main amd64 libxxf86dga1 amd64 2:1.1.5-1 [22.1 kB] Get:493 http://deb.debian.org/debian trixie/main amd64 x11-utils amd64 7.7+6 [180 kB] Get:494 http://deb.debian.org/debian trixie/main amd64 libatk-wrapper-java all 0.40.0-3 [63.4 kB] Get:495 http://deb.debian.org/debian trixie/main amd64 libatk-wrapper-java-jni amd64 0.40.0-3 [54.6 kB] Get:496 http://deb.debian.org/debian trixie/main amd64 libauthen-sasl-perl all 2.1700-1 [44.8 kB] Get:497 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:498 http://deb.debian.org/debian trixie/main amd64 libvariable-magic-perl amd64 0.63-1+b2 [43.9 kB] Get:499 http://deb.debian.org/debian trixie/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:500 http://deb.debian.org/debian trixie/main amd64 libbio-searchio-hmmer-perl all 1.7.3-2 [95.9 kB] Get:501 http://deb.debian.org/debian trixie/main amd64 libcarp-clan-perl all 6.08-2 [14.1 kB] Get:502 http://deb.debian.org/debian trixie/main amd64 libbit-vector-perl amd64 7.4-2+b2 [141 kB] Get:503 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:504 http://deb.debian.org/debian trixie/main amd64 libsnappy1v5 amd64 1.1.10-1 [27.3 kB] Get:505 http://deb.debian.org/debian trixie/main amd64 libblosc1 amd64 1.21.5+ds-1+b1 [49.6 kB] Get:506 http://deb.debian.org/debian trixie/main amd64 libbsd-resource-perl amd64 1.2911-2+b2 [31.9 kB] Get:507 http://deb.debian.org/debian trixie/main amd64 libc-devtools amd64 2.37-15~deb13u1 [54.6 kB] Get:508 http://deb.debian.org/debian trixie/main amd64 libcairo-gobject2 amd64 1.18.0-1+b1 [129 kB] Get:509 http://deb.debian.org/debian trixie/main amd64 libcapnp-1.0.1 amd64 1.0.1-3+b1 [1460 kB] Get:510 http://deb.debian.org/debian trixie/main amd64 libcgi-pm-perl all 4.61-1 [217 kB] Get:511 http://deb.debian.org/debian trixie/main amd64 libcgi-fast-perl all 1:2.17-1 [11.8 kB] Get:512 http://deb.debian.org/debian trixie/main amd64 libconvert-binary-c-perl amd64 0.84-1+b3 [271 kB] Get:513 http://deb.debian.org/debian trixie/main amd64 libcrypt-rc4-perl all 2.02-5 [7480 B] Get:514 http://deb.debian.org/debian trixie/main amd64 libdata-dump-perl all 1.25-1 [28.4 kB] Get:515 http://deb.debian.org/debian trixie/main amd64 libdate-calc-perl all 6.4-2 [191 kB] Get:516 http://deb.debian.org/debian trixie/main amd64 libdate-calc-xs-perl amd64 6.4-2+b2 [52.1 kB] Get:517 http://deb.debian.org/debian trixie/main amd64 libdate-manip-perl all 6.94-1 [904 kB] Get:518 http://deb.debian.org/debian trixie/main amd64 libdbd-mysql-perl amd64 4.052-1+b1 [114 kB] Get:519 http://deb.debian.org/debian trixie/main amd64 libdbd-pg-perl amd64 3.18.0-1+b1 [210 kB] Get:520 http://deb.debian.org/debian trixie/main amd64 libdbd-sqlite3-perl amd64 1.74-1+b1 [175 kB] Get:521 http://deb.debian.org/debian trixie/main amd64 libdigest-perl-md5-perl all 1.9-5 [11.7 kB] Get:522 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get:523 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get:524 http://deb.debian.org/debian trixie/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get:525 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get:526 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get:527 http://deb.debian.org/debian trixie/main amd64 librdmacm1 amd64 48.0-1.1 [69.5 kB] Get:528 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get:529 http://deb.debian.org/debian trixie/main amd64 libfcgi-bin amd64 2.4.2-2 [12.9 kB] Get:530 http://deb.debian.org/debian trixie/main amd64 libfile-slurp-perl all 9999.32-2 [26.7 kB] Get:531 http://deb.debian.org/debian trixie/main amd64 libfont-afm-perl all 1.20-4 [13.1 kB] Get:532 http://deb.debian.org/debian trixie/main amd64 libfreezethaw-perl all 0.5001-3 [16.0 kB] Get:533 http://deb.debian.org/debian trixie/main amd64 libgail18 amd64 2.24.33-3 [17.7 kB] Get:534 http://deb.debian.org/debian trixie/main amd64 libgail-common amd64 2.24.33-3 [120 kB] Get:535 http://deb.debian.org/debian trixie/main amd64 libgdk-pixbuf2.0-bin amd64 2.42.10+dfsg-3 [18.1 kB] Get:536 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240201-3 [836 kB] Get:537 http://deb.debian.org/debian trixie/main amd64 libglib2.0-data all 2.78.3-2 [1223 kB] Get:538 http://deb.debian.org/debian trixie/main amd64 libgpm2 amd64 1.20.7-10+b2 [14.2 kB] Get:539 http://deb.debian.org/debian trixie/main amd64 libheap-perl all 0.80-5 [34.3 kB] Get:540 http://deb.debian.org/debian trixie/main amd64 libset-object-perl amd64 1.42-1+b3 [37.5 kB] Get:541 http://deb.debian.org/debian trixie/main amd64 libgraph-perl all 1:0.9727-1 [111 kB] Get:542 http://deb.debian.org/debian trixie/main amd64 libparse-recdescent-perl all 1.967015+dfsg-4 [147 kB] Get:543 http://deb.debian.org/debian trixie/main amd64 libxml-xpath-perl all 1.48-1 [71.0 kB] Get:544 http://deb.debian.org/debian trixie/main amd64 libgraphviz-perl all 2.24-1 [92.7 kB] Get:545 http://deb.debian.org/debian trixie/main amd64 libgslcblas0 amd64 2.7.1+dfsg-6 [107 kB] Get:546 http://deb.debian.org/debian trixie/main amd64 libgsl27 amd64 2.7.1+dfsg-6 [936 kB] Get:547 http://deb.debian.org/debian trixie/main amd64 libgtk2.0-bin amd64 2.24.33-3 [10.9 kB] Get:548 http://deb.debian.org/debian trixie/main amd64 libgts-bin amd64 0.7.6+darcs121130-5+b1 [50.3 kB] Get:549 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.2-1 [7684 B] Get:550 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1 amd64 1.10.10+repack-3 [1243 kB] Get:551 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-aomenc amd64 1.17.6-1 [19.7 kB] Get:552 http://deb.debian.org/debian trixie/main amd64 libx265-199 amd64 3.5-2+b1 [1150 kB] Get:553 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-x265 amd64 1.17.6-1 [18.6 kB] Get:554 http://deb.debian.org/debian trixie/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:555 http://deb.debian.org/debian trixie/main amd64 libhtml-format-perl all 2.16-2 [38.8 kB] Get:556 http://deb.debian.org/debian trixie/main amd64 libhtml-tableextract-perl all 2.15-2 [30.6 kB] Get:557 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.0-1 [92.8 kB] Get:558 http://deb.debian.org/debian trixie/main amd64 libhts3 amd64 1.18+ds-1 [441 kB] Get:559 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 525.125.06-1 [13.5 kB] Get:560 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1 [39.7 kB] Get:561 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.10.0-1 [161 kB] Get:562 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.10.0-1 [17.7 kB] Get:563 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1 [35.0 kB] Get:564 http://deb.debian.org/debian trixie/main amd64 libio-compress-brotli-perl amd64 0.004001-2+b1 [16.9 kB] Get:565 http://deb.debian.org/debian trixie/main amd64 libjbzip2-java all 0.9.1-8 [42.7 kB] Get:566 http://deb.debian.org/debian trixie/main amd64 libjcode-pm-perl amd64 2.06-1.1 [30.0 kB] Get:567 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:568 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:569 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:570 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get:571 http://deb.debian.org/debian trixie/main amd64 libldap-common all 2.5.13+dfsg-5 [29.3 kB] Get:572 http://deb.debian.org/debian trixie/main amd64 liblist-moreutils-xs-perl amd64 0.430-3+b2 [42.1 kB] Get:573 http://deb.debian.org/debian trixie/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:574 http://deb.debian.org/debian trixie/main amd64 liblist-someutils-xs-perl amd64 0.58-3+b1 [34.1 kB] Get:575 http://deb.debian.org/debian trixie/main amd64 liblmdb0 amd64 0.9.31-1 [44.3 kB] Get:576 http://deb.debian.org/debian trixie/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:577 http://deb.debian.org/debian trixie/main amd64 libmath-derivative-perl all 1.01-3 [8060 B] Get:578 http://deb.debian.org/debian trixie/main amd64 libmath-spline-perl all 0.02-4 [6808 B] Get:579 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto7 amd64 2.28.7-1 [280 kB] Get:580 http://deb.debian.org/debian trixie/main amd64 libmbedx509-1 amd64 2.28.7-1 [130 kB] Get:581 http://deb.debian.org/debian trixie/main amd64 libmbedtls14 amd64 2.28.7-1 [165 kB] Get:582 http://deb.debian.org/debian trixie/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:583 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.15-3 [19.7 kB] Get:584 http://deb.debian.org/debian trixie/main amd64 libmurmurhash2 amd64 1.5-3 [5860 B] Get:585 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:586 http://deb.debian.org/debian trixie/main amd64 libsub-identify-perl amd64 0.14-3+b1 [11.2 kB] Get:587 http://deb.debian.org/debian trixie/main amd64 libsub-name-perl amd64 0.27-1+b1 [12.5 kB] Get:588 http://deb.debian.org/debian trixie/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:589 http://deb.debian.org/debian trixie/main amd64 ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB] Get:590 http://deb.debian.org/debian trixie/main amd64 libncbi6 amd64 6.1.20170106+dfsg1-10 [4082 kB] Get:591 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.4+20240113-1 [104 kB] Get:592 http://deb.debian.org/debian trixie/main amd64 libnlopt0 amd64 2.7.1-5+b2 [174 kB] Get:593 http://deb.debian.org/debian trixie/main amd64 libole-storage-lite-perl all 0.22-1 [22.8 kB] Get:594 http://deb.debian.org/debian trixie/main amd64 libpmix2 amd64 5.0.1-4 [644 kB] Get:595 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.15.0-1 [940 kB] Get:596 http://deb.debian.org/debian trixie/main amd64 libopenmpi3 amd64 4.1.6-5 [2427 kB] Get:597 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b2 [20.2 kB] Get:598 http://deb.debian.org/debian trixie/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get:599 http://deb.debian.org/debian trixie/main amd64 libpod-parser-perl all 1.67-1 [94.1 kB] Get:600 http://deb.debian.org/debian trixie/main amd64 libpod-coverage-perl all 0.23-2 [22.1 kB] Get:601 http://deb.debian.org/debian trixie/main amd64 libpostscript-perl all 0.06-3.1 [26.0 kB] Get:602 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.1-2 [1919 kB] Get:603 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6 [244 kB] Get:604 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1 [13.7 kB] Get:605 http://deb.debian.org/debian trixie/main amd64 libref-util-perl all 0.204-2 [17.4 kB] Get:606 http://deb.debian.org/debian trixie/main amd64 libref-util-xs-perl amd64 0.117-2+b2 [14.0 kB] Get:607 http://deb.debian.org/debian trixie/main amd64 librsvg2-2 amd64 2.54.7+dfsg-2 [2626 kB] Get:608 http://deb.debian.org/debian trixie/main amd64 librsvg2-common amd64 2.54.7+dfsg-2 [21.5 kB] Get:609 http://deb.debian.org/debian trixie/main amd64 rubygems-integration all 1.18 [6704 B] Get:610 http://deb.debian.org/debian trixie/main amd64 ruby3.1 amd64 3.1.2-8 [663 kB] Get:611 http://deb.debian.org/debian trixie/main amd64 ruby-rubygems all 3.4.20-1 [309 kB] Get:612 http://deb.debian.org/debian trixie/main amd64 ruby amd64 1:3.1 [5868 B] Get:613 http://deb.debian.org/debian trixie/main amd64 rake all 13.0.6-3 [83.9 kB] Get:614 http://deb.debian.org/debian trixie/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get:615 http://deb.debian.org/debian trixie/main amd64 ruby-webrick all 1.8.1-1 [51.4 kB] Get:616 http://deb.debian.org/debian trixie/main amd64 ruby-xmlrpc all 0.3.2-2 [24.4 kB] Get:617 http://deb.debian.org/debian trixie/main amd64 ruby-sdbm amd64 1.0.0-5+b2 [15.5 kB] Get:618 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:619 http://deb.debian.org/debian trixie/main amd64 libruby3.1 amd64 3.1.2-8 [5401 kB] Get:620 http://deb.debian.org/debian trixie/main amd64 libruby amd64 1:3.1 [4972 B] Get:621 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules amd64 2.1.28+dfsg1-4+b1 [66.1 kB] Get:622 http://deb.debian.org/debian trixie/main amd64 libset-scalar-perl all 1.29-3 [32.1 kB] Get:623 http://deb.debian.org/debian trixie/main amd64 libsort-naturally-perl all 1.03-4 [13.1 kB] Get:624 http://deb.debian.org/debian trixie/main amd64 libspreadsheet-writeexcel-perl all 2.40-4 [503 kB] Get:625 http://deb.debian.org/debian trixie/main amd64 libunicode-map-perl amd64 0.112-13+b2 [145 kB] Get:626 http://deb.debian.org/debian trixie/main amd64 libspreadsheet-parseexcel-perl all 0.6600-1 [126 kB] Get:627 http://deb.debian.org/debian trixie/main amd64 libssw0 amd64 1.1-14 [20.9 kB] Get:628 http://deb.debian.org/debian trixie/main amd64 libstatistics-descriptive-perl all 3.0801-1 [62.8 kB] Get:629 http://deb.debian.org/debian trixie/main amd64 libsvg-graph-perl all 0.02-4 [105 kB] Get:630 http://deb.debian.org/debian trixie/main amd64 libswiss-perl all 1.80-1 [776 kB] Get:631 http://deb.debian.org/debian trixie/main amd64 libtest-pod-perl all 1.52-2 [12.9 kB] Get:632 http://deb.debian.org/debian trixie/main amd64 libtext-csv-xs-perl amd64 1.53-1+b1 [133 kB] Get:633 http://deb.debian.org/debian trixie/main amd64 libtext-iconv-perl amd64 1.7-8+b2 [14.4 kB] Get:634 http://deb.debian.org/debian trixie/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB] Get:635 http://deb.debian.org/debian trixie/main amd64 libtype-tiny-xs-perl amd64 0.025-1+b1 [26.1 kB] Get:636 http://deb.debian.org/debian trixie/main amd64 libwayland-client0 amd64 1.22.0-2.1 [25.4 kB] Get:637 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.3.2-0.3 [107 kB] Get:638 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.3.2-0.3 [120 kB] Get:639 http://deb.debian.org/debian trixie/main amd64 libxml-filter-buffertext-perl all 1.01-7 [7136 B] Get:640 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:641 http://deb.debian.org/debian trixie/main amd64 libxml-libxslt-perl amd64 2.002001-1+b1 [47.5 kB] Get:642 http://deb.debian.org/debian trixie/main amd64 libxml-sax-writer-perl all 0.57-2 [23.1 kB] Get:643 http://deb.debian.org/debian trixie/main amd64 libxmlrpc-lite-perl all 0.717-5 [22.4 kB] Get:644 http://deb.debian.org/debian trixie/main amd64 libxstring-perl amd64 0.005-2+b2 [8084 B] Get:645 http://deb.debian.org/debian trixie/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1+b1 [34.2 kB] Get:646 http://deb.debian.org/debian trixie/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:647 http://deb.debian.org/debian trixie/main amd64 luit amd64 2.0.20221028-1 [53.8 kB] Get:648 http://deb.debian.org/debian trixie/main amd64 lynx-common all 2.9.0rel.0-2 [1193 kB] Get:649 http://deb.debian.org/debian trixie/main amd64 lynx amd64 2.9.0rel.0-2 [637 kB] Get:650 http://deb.debian.org/debian trixie/main amd64 mafft amd64 7.505-1 [1078 kB] Get:651 http://deb.debian.org/debian trixie/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:652 http://deb.debian.org/debian trixie/main amd64 manpages-dev all 6.05.01-1 [2025 kB] Get:653 http://deb.debian.org/debian trixie/main amd64 maq amd64 0.7.1-9 [303 kB] Get:654 http://deb.debian.org/debian trixie/main amd64 mash amd64 2.3+dfsg-6 [194 kB] Get:655 http://deb.debian.org/debian trixie/main amd64 med-config all 3.8.1 [11.1 kB] Get:656 http://deb.debian.org/debian trixie/main amd64 mesa-vulkan-drivers amd64 23.3.4-1 [9938 kB] Get:657 http://deb.debian.org/debian trixie/main amd64 muscle amd64 1:5.1.0-1 [297 kB] Get:658 http://deb.debian.org/debian trixie/main amd64 mustang amd64 3.2.4-1 [105 kB] Get:659 http://deb.debian.org/debian trixie/main amd64 ncbi-blast+ amd64 2.12.0+ds-4 [12.5 MB] Get:660 http://deb.debian.org/debian trixie/main amd64 ncbi-blast+-legacy all 2.12.0+ds-4 [8956 B] Get:661 http://deb.debian.org/debian trixie/main amd64 ncbi-tools-bin amd64 6.1.20170106+dfsg1-10 [1941 kB] Get:662 http://deb.debian.org/debian trixie/main amd64 ncoils amd64 2002-9 [22.2 kB] Get:663 http://deb.debian.org/debian trixie/main amd64 openmpi-common all 4.1.6-5 [168 kB] Get:664 http://deb.debian.org/debian trixie/main amd64 openmpi-bin amd64 4.1.6-5 [226 kB] Get:665 http://deb.debian.org/debian trixie/main amd64 pal2nal all 14.1-3 [17.8 kB] Get:666 http://deb.debian.org/debian trixie/main amd64 paml amd64 4.9j+dfsg-4 [704 kB] Get:667 http://deb.debian.org/debian trixie/main amd64 sysstat amd64 12.7.5-2 [623 kB] Get:668 http://deb.debian.org/debian trixie/main amd64 parallel all 20231122+ds-1 [1946 kB] Get:669 http://deb.debian.org/debian trixie/main amd64 perl-doc all 5.38.2-3 [7832 kB] Get:670 http://deb.debian.org/debian trixie/main amd64 perl-tk amd64 1:804.036+dfsg1-2 [1985 kB] Get:671 http://deb.debian.org/debian trixie/main amd64 pftools amd64 3.2.12-1 [24.8 MB] Get:672 http://deb.debian.org/debian trixie/main amd64 phylip amd64 1:3.697+dfsg-3 [957 kB] Get:673 http://deb.debian.org/debian trixie/main amd64 phyml amd64 3:3.3.20220408-3 [1103 kB] Get:674 http://deb.debian.org/debian trixie/main amd64 samtools amd64 1.19-1 [644 kB] Get:675 http://deb.debian.org/debian trixie/main amd64 prodigal amd64 1:2.6.3-6 [508 kB] Get:676 http://deb.debian.org/debian trixie/main amd64 prokka all 1.14.6+dfsg-6 [15.2 MB] Get:677 http://deb.debian.org/debian trixie/main amd64 plasmidid amd64 1.6.5+dfsg-2 [47.2 kB] Get:678 http://deb.debian.org/debian trixie/main amd64 poa amd64 2.0+20060928-8 [53.2 kB] Get:679 http://deb.debian.org/debian trixie/main amd64 prank amd64 0.0.170427+dfsg-3 [395 kB] Get:680 http://deb.debian.org/debian trixie/main amd64 primer3 amd64 2.6.1-4 [202 kB] Get:681 http://deb.debian.org/debian trixie/main amd64 probalign amd64 1.4-10 [70.6 kB] Get:682 http://deb.debian.org/debian trixie/main amd64 probcons amd64 1.12-14 [119 kB] Get:683 http://deb.debian.org/debian trixie/main amd64 proda amd64 1.0-14 [65.4 kB] Get:684 http://deb.debian.org/debian trixie/main amd64 psmisc amd64 23.6-2 [259 kB] Get:685 http://deb.debian.org/debian trixie/main amd64 publicsuffix all 20231001.0357-0.1 [125 kB] Get:686 http://deb.debian.org/debian trixie/main amd64 python-babel-localedata all 2.10.3-3 [5611 kB] Get:687 http://deb.debian.org/debian trixie/main amd64 python-biopython-doc all 1.81+dfsg-3 [17.3 MB] Get:688 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get:689 http://deb.debian.org/debian trixie/main amd64 python-odf-doc all 1.4.2-2 [213 kB] Get:690 http://deb.debian.org/debian trixie/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get:691 http://deb.debian.org/debian trixie/main amd64 python3-odf all 1.4.2-2 [78.0 kB] Get:692 http://deb.debian.org/debian trixie/main amd64 python-odf-tools all 1.4.2-2 [28.1 kB] Get:693 http://deb.debian.org/debian trixie/main amd64 python-tables-data all 3.7.0-10 [47.6 kB] Get:694 http://deb.debian.org/debian trixie/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:695 http://deb.debian.org/debian trixie/main amd64 python3-attr all 23.2.0-1 [65.5 kB] Get:696 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:697 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2023.4-1 [30.8 kB] Get:698 http://deb.debian.org/debian trixie/main amd64 python3-babel all 2.10.3-3 [100.0 kB] Get:699 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.1-2 [646 kB] Get:700 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.24.2-2 [6299 kB] Get:701 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:702 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.11.5-1 [108 kB] Get:703 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 10.2.0-1 [77.7 kB] Get:704 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.2.0-1 [525 kB] Get:705 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.25.1-2 [140 kB] Get:706 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.4.0-1 [80.3 kB] Get:707 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:708 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.0.9-1 [674 kB] Get:709 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get:710 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:711 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.81+dfsg-3 [1625 kB] Get:712 http://deb.debian.org/debian trixie/main amd64 python3-bottleneck amd64 1.3.5+ds1-3+b1 [101 kB] Get:713 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get:714 http://deb.debian.org/debian trixie/main amd64 python3-soupsieve all 2.5-1 [38.1 kB] Get:715 http://deb.debian.org/debian trixie/main amd64 python3-bs4 all 4.12.3-1 [133 kB] Get:716 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.0.7-1+b2 [287 kB] Get:717 http://deb.debian.org/debian trixie/main amd64 python3-cssselect all 1.2.0-2 [21.6 kB] Get:718 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:719 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:720 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.8.2-3 [78.4 kB] Get:721 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:722 http://deb.debian.org/debian trixie/main amd64 python3-et-xmlfile all 1.0.1-2.1 [9180 B] Get:723 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.10.1-10 [19.7 MB] Get:724 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get:725 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-3 [95.3 kB] Get:726 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.1.0-1 [2092 kB] Get:727 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get:728 http://deb.debian.org/debian trixie/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b1 [299 kB] Get:729 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:730 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get:731 http://deb.debian.org/debian trixie/main amd64 python3-webencodings all 0.5.1-5 [11.1 kB] Get:732 http://deb.debian.org/debian trixie/main amd64 python3-html5lib all 1.1-3 [93.0 kB] Get:733 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get:734 http://deb.debian.org/debian trixie/main amd64 python3-markupsafe amd64 2.1.3-1+b1 [14.5 kB] Get:735 http://deb.debian.org/debian trixie/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get:736 http://deb.debian.org/debian trixie/main amd64 python3-joblib all 1.3.2-1 [217 kB] Get:737 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.4-1+b2 [80.3 kB] Get:738 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.1-1 [145 kB] Get:739 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 23.2-1 [44.8 kB] Get:740 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.6.3-1+b2 [8166 kB] Get:741 http://deb.debian.org/debian trixie/main amd64 python3-numexpr amd64 2.9.0-1 [101 kB] Get:742 http://deb.debian.org/debian trixie/main amd64 python3-olefile all 0.46-3 [36.1 kB] Get:743 http://deb.debian.org/debian trixie/main amd64 python3-openpyxl all 3.1.2+dfsg-5 [165 kB] Get:744 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-12 [6811 kB] Get:745 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 1.5.3+dfsg-12 [2887 kB] Get:746 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.3.0-1 [25.1 kB] Get:747 http://deb.debian.org/debian trixie/main amd64 python3-psutil amd64 5.9.8-1 [225 kB] Get:748 http://deb.debian.org/debian trixie/main amd64 python3-pygments all 2.15.1+dfsg-1 [817 kB] Get:749 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 7.4.4-1 [239 kB] Get:750 http://deb.debian.org/debian trixie/main amd64 python3-simplejson amd64 3.19.2-1+b1 [69.4 kB] Get:751 http://deb.debian.org/debian trixie/main amd64 python3-tables-lib amd64 3.7.0-10+b1 [674 kB] Get:752 http://deb.debian.org/debian trixie/main amd64 python3-tables all 3.7.0-10 [338 kB] Get:753 http://deb.debian.org/debian trixie/main amd64 python3-yaml amd64 6.0.1-2 [177 kB] Get:754 http://deb.debian.org/debian trixie/main amd64 raxml amd64 8.2.13+dfsg-1 [1480 kB] Get:755 http://deb.debian.org/debian trixie/main amd64 sim4 amd64 0.0.20121010-8 [359 kB] Get:756 http://deb.debian.org/debian trixie/main amd64 spades amd64 3.15.5+dfsg-7 [9020 kB] Get:757 http://deb.debian.org/debian trixie/main amd64 t-coffee amd64 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [1032 kB] Get:758 http://deb.debian.org/debian trixie/main amd64 tigr-glimmer amd64 3.02b-6+b1 [283 kB] Get:759 http://deb.debian.org/debian trixie/main amd64 tm-align amd64 20190822+dfsg-2 [865 kB] Get:760 http://deb.debian.org/debian trixie/main amd64 trimmomatic all 0.39+dfsg-2 [758 kB] Get:761 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB] Get:762 http://deb.debian.org/debian trixie/main amd64 wise-data all 2.4.1-23 [78.2 kB] Get:763 http://deb.debian.org/debian trixie/main amd64 wise amd64 2.4.1-23 [994 kB] Get:764 http://deb.debian.org/debian trixie/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get:765 http://deb.debian.org/debian trixie/main amd64 xdg-user-dirs amd64 0.18-1 [54.4 kB] Get:766 http://deb.debian.org/debian trixie/main amd64 zip amd64 3.0-13 [230 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 713 MB in 39s (18.2 MB/s) 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Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /usr/lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /usr/lib/systemd/system/remote-fs.target. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /usr/lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. [ESC][0;1;31m"/home" already exists and is not a directory.[ESC][0m Setting up dmsetup (2:1.02.185-3) ... Selecting previously unselected package systemd-sysv. (Reading database ... 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Setting up binutils-common:amd64 (2.42-2) ... Setting up x11-common (1:7.7+23) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libsensors-config (1:3.6.0-8) ... Setting up libnghttp2-14:amd64 (1.59.0-1) ... Setting up libmagic1:amd64 (1:5.45-2+b1) ... Setting up libdeflate0:amd64 (1.19-1) ... Setting up libapr1:amd64 (1.7.2-3+b2) ... Setting up less (590-2) ... Setting up perl-openssl-defaults:amd64 (7+b1) ... Setting up linux-libc-dev (6.6.13-1) ... Setting up libctf-nobfd0:amd64 (2.42-2) ... Setting up libgsl27:amd64 (2.7.1+dfsg-6) ... Setting up libnss-systemd:amd64 (255.3-1) ... Setting up libqhull-r8.0:amd64 (2020.2-6) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libnlopt0:amd64 (2.7.1-5+b2) ... Setting up ncoils (2002-9) ... Setting up krb5-locales (1.20.1-5) ... Setting up libsvtav1enc1d1:amd64 (1.7.0+dfsg-2) ... Setting up hyphy-common (2.5.59+dfsg-1) ... Setting up file (1:5.45-2+b1) ... Setting up libgomp1:amd64 (14-20240201-3) ... Setting up muscle (1:5.1.0-1) ... Setting up bzip2 (1.0.8-5+b2) ... Setting up emboss-data (6.6.0+dfsg-12) ... Setting up libldap-common (2.5.13+dfsg-5) ... Setting up probalign (1.4-10) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up librav1e0:amd64 (0.6.6-7) ... Setting up libaec0:amd64 (1.1.2-1) ... Setting up libsframe1:amd64 (2.42-2) ... Setting up python-babel-localedata (2.10.3-3) ... Setting up libjansson4:amd64 (2.14-2+b2) ... Setting up libsnappy1v5:amd64 (1.1.10-1) ... Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Setting up poppler-data (0.4.12-1) ... Setting up libkrb5support0:amd64 (1.20.1-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Setting up libdconf1:amd64 (0.40.0-4+b1) ... Setting up unicode-data (15.1.0-1) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-5+b1) ... Setting up mariadb-common (1:10.11.6-2) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libasound2-data (1.2.10-3) ... Setting up infernal (1.1.5-2) ... Setting up fonts-cmu (0.7.0-5) ... Setting up primer3 (2.6.1-4) ... Setting up zip (3.0-13) ... Setting up libfontenc1:amd64 (1:1.1.4-1+b2) ... Setting up kalign (1:3.3.5-1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libglib2.0-data (2.78.3-2) ... Setting up rpcsvc-proto (1.4.3-1) ... Setting up dialign-tx-data (1.0.2-14) ... Setting up libmunge2:amd64 (0.5.15-3) ... Setting up lagan (2.0-9) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Setting up mustang (3.2.4-1) ... Setting up libmbedcrypto7:amd64 (2.28.7-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libnspr4:amd64 (2:4.35-1.1) ... Setting up libjbig2dec0:amd64 (0.20-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up proda (1.0-14) ... Setting up sim4 (0.0.20121010-8) ... Setting up libpathplan4:amd64 (2.42.2-8) ... Setting up libavahi-common-data:amd64 (0.8-13+b1) ... Setting up libann0 (1.1.2+doc-9+b1) ... Setting up libncurses6:amd64 (6.4+20240113-1) ... Setting up libdbus-1-3:amd64 (1.14.10-4) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up xz-utils (5.4.5-0.3) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up perl-modules-5.38 (5.38.2-3) ... Setting up libquadmath0:amd64 (14-20240201-3) ... Setting up libimagequant0:amd64 (2.18.0-1) ... Setting up libproc2-0:amd64 (2:4.0.4-4) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16:amd64 (1.6.40-3) ... Setting up libhwloc15:amd64 (2.10.0-1) ... Setting up libmpc3:amd64 (1.3.1-1+b2) ... Setting up systemd-timesyncd (255.3-1) ... Creating group 'systemd-timesync' with GID 997. Creating user 'systemd-timesync' (systemd Time Synchronization) with UID 997 and GID 997. Created symlink /etc/systemd/system/dbus-org.freedesktop.timesync1.service → /usr/lib/systemd/system/systemd-timesyncd.service. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service → /usr/lib/systemd/system/systemd-timesyncd.service. Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libatomic1:amd64 (14-20240201-3) ... Setting up libidn12:amd64 (1.42-1) ... Setting up mash (2.3+dfsg-6) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up libjsoncpp25:amd64 (1.9.5-6+b2) ... Setting up libmariadb3:amd64 (1:10.11.6-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libjbzip2-java (0.9.1-8) ... Setting up libgav1-1:amd64 (0.18.0-1+b1) ... Setting up libpcsclite1:amd64 (2.0.1-1) ... Setting up libsensors5:amd64 (1:3.6.0-8) ... Setting up libncursesw6:amd64 (6.4+20240113-1) ... Setting up wise-data (2.4.1-23) ... Setting up libk5crypto3:amd64 (1.20.1-5) ... Setting up lynx-common (2.9.0rel.0-2) ... Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-5) ... Setting up amap-align (2.2+git20080214.600fc29+dfsg-2) ... Setting up libltdl7:amd64 (2.4.7-7) ... Setting up libglapi-mesa:amd64 (23.3.4-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Setting up libgfortran5:amd64 (14-20240201-3) ... Setting up libvulkan1:amd64 (1.3.275.0-1) ... Setting up libwebp7:amd64 (1.3.2-0.3) ... Setting up ruby-webrick (1.8.1-1) ... Setting up libubsan1:amd64 (14-20240201-3) ... Setting up libgif7:amd64 (5.2.1-2.5) ... Setting up fonts-dejavu-extra (2.37-8) ... Setting up libnuma1:amd64 (2.0.16-1) ... Setting up alsa-topology-conf (1.2.5.1-2) ... Setting up libdav1d7:amd64 (1.3.0-2+b1) ... Setting up sensible-utils (0.0.20) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libhwasan0:amd64 (14-20240201-3) ... Setting up paml (4.9j+dfsg-4) ... Setting up at-spi2-common (2.50.0-1) ... Setting up python-biopython-doc (1.81+dfsg-3) ... Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up bamtools (2.5.2+dfsg-5) ... Setting up dialign-tx (1.0.2-14+b1) ... Setting up dbus-session-bus-common (1.14.10-4) ... Setting up libasan8:amd64 (14-20240201-3) ... Setting up liblua5.3-0:amd64 (5.3.6-2) ... Setting up pal2nal (14.1-3) ... Setting up procps (2:4.0.4-4) ... Setting up libasound2:amd64 (1.2.10-3) ... Setting up libblosc1:amd64 (1.21.5+ds-1+b1) ... Setting up fonts-liberation (1:2.1.5-3) ... Setting up libnl-3-200:amd64 (3.7.0-0.3) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.6-5) ... Setting up clustalw (2.1+lgpl-7) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b2) ... Setting up libthai-data (0.1.29-2) ... Setting up libssh2-1:amd64 (1.11.0-4) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libgtk2.0-common (2.24.33-3) ... Setting up libcdt5:amd64 (2.42.2-8) ... Setting up libatk1.0-0:amd64 (2.50.0-1+b1) ... Setting up libkrb5-3:amd64 (1.20.1-5) ... Setting up libcgraph6:amd64 (2.42.2-8) ... Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libtsan2:amd64 (14-20240201-3) ... Setting up fonts-circos-symbols (0.69.9+dfsg-2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up fonts-liberation-sans-narrow (1:1.07.6-4) ... Setting up libbinutils:amd64 (2.42-2) ... Setting up dbus-system-bus-common (1.14.10-4) ... Setting up menu (2.1.50) ... Setting up libfido2-1:amd64 (1.14.0-1) ... Setting up libisl23:amd64 (0.26-3+b2) ... Setting up libde265-0:amd64 (1.0.15-1) ... Setting up libc-dev-bin (2.37-15~deb13u1) ... Setting up libdivsufsort3:amd64 (2.0.1-5) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.1.4-2) ... Setting up libwebpmux3:amd64 (1.3.2-0.3) ... Setting up libbsd0:amd64 (0.11.8-1) ... Setting up tigr-glimmer (3.02b-6+b1) ... Setting up libdrm-common (2.4.120-1) ... Setting up libyuv0:amd64 (0.0~git202401110.af6ac82-1) ... Setting up libelf1:amd64 (0.190-1+b1) ... Setting up dialign (2.2.1-11) ... Setting up libssw0:amd64 (1.1-14) ... Setting up ruby-xmlrpc (0.3.2-2) ... Setting up publicsuffix (20231001.0357-0.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up python-tables-data (3.7.0-10) ... Setting up exonerate (2.4.0-5) ... Setting up bedtools (2.31.1+dfsg-2) ... Setting up libcc1-0:amd64 (14-20240201-3) ... Setting up dbus-bin (1.14.10-4) ... Setting up liblsan0:amd64 (14-20240201-3) ... Setting up libsz2:amd64 (1.1.2-1) ... Setting up libitm1:amd64 (14-20240201-3) ... Setting up prank (0.0.170427+dfsg-3) ... Setting up libargtable2-0 (13-1.1) ... Setting up libgdbm6:amd64 (1.23-5) ... Setting up maq (0.7.1-9) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Setting up raxml (8.2.13+dfsg-1) ... Setting up libaprutil1:amd64 (1.6.3-1+b1) ... Setting up libwayland-client0:amd64 (1.22.0-2.1) ... Setting up libctf0:amd64 (2.42-2) ... Setting up libncbi6:amd64 (6.1.20170106+dfsg1-10) ... Setting up python3.12-minimal (3.12.1-2) ... Setting up libgts-bin (0.7.6+darcs121130-5+b1) ... Setting up manpages-dev (6.05.01-1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libavif16:amd64 (1.0.3-1) ... Setting up libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up libxcb-xfixes0:amd64 (1.15-1) ... Setting up libmbedx509-1:amd64 (2.28.7-1) ... Setting up libmbedtls14:amd64 (2.28.7-1) ... Setting up alsa-ucm-conf (1.2.10-1) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up cpp-13-x86-64-linux-gnu (13.2.0-13) ... Setting up fontconfig-config (2.14.2-6+b1) ... Setting up wise (2.4.1-23) ... Setting up libxcb-glx0:amd64 (1.15-1) ... Setting up libwebpdemux2:amd64 (1.3.2-0.3) ... Setting up libedit2:amd64 (3.1-20230828-1) ... Setting up libxcb-shape0:amd64 (1.15-1) ... Setting up libavahi-common3:amd64 (0.8-13+b1) ... Setting up libnss3:amd64 (2:3.96.1-1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up dbus-daemon (1.14.10-4) ... Setting up clustalo (1.2.4-8) ... Setting up tm-align (20190822+dfsg-2) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.3-1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3) ... Setting up libxcb-present0:amd64 (1.15-1) ... Setting up libthai0:amd64 (0.1.29-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libgprofng0:amd64 (2.42-2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b1) ... Setting up libxcb-sync1:amd64 (1.15-1) ... Setting up fonts-liberation2 (1:2.1.5-3) ... Setting up dbus (1.14.10-4) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-1) ... Setting up python-odf-doc (1.4.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-5) ... Setting up libgdbm-compat4:amd64 (1.23-5) ... Setting up ucf (3.0043+nmu1) ... Setting up libx265-199:amd64 (3.5-2+b1) ... Setting up libxcb-dri2-0:amd64 (1.15-1) ... Setting up libgvpr2:amd64 (2.42.2-8) ... Setting up libdrm2:amd64 (2.4.120-1) ... Setting up ncbi-tools-bin (6.1.20170106+dfsg1-10) ... Setting up libgcc-13-dev:amd64 (13.2.0-13) ... Setting up libxcb-randr0:amd64 (1.15-1) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libpam-systemd:amd64 (255.3-1) ... Setting up hmmer (3.4+dfsg-2) ... Setting up libcurl4:amd64 (8.5.0-2) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.2-6+b1) ... Setting up libxkbfile1:amd64 (1:1.1.0-1) ... Setting up lynx (2.9.0rel.0-2) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libllvm17:amd64 (1:17.0.6-5) ... Setting up libxcomposite1:amd64 (1:0.4.5-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up sysstat (12.7.5-2) ... Creating config file /etc/default/sysstat with new version update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode Created symlink /etc/systemd/system/sysstat.service.wants/sysstat-collect.timer → /usr/lib/systemd/system/sysstat-collect.timer. Created symlink /etc/systemd/system/sysstat.service.wants/sysstat-rotate.timer → /usr/lib/systemd/system/sysstat-rotate.timer. Created symlink /etc/systemd/system/sysstat.service.wants/sysstat-summary.timer → /usr/lib/systemd/system/sysstat-summary.timer. Created symlink /etc/systemd/system/multi-user.target.wants/sysstat.service → /usr/lib/systemd/system/sysstat.service. Setting up libavahi-client3:amd64 (0.8-13+b1) ... Setting up libxmuu1:amd64 (2:1.1.3-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up binutils-x86-64-linux-gnu (2.42-2) ... Setting up libdrm-amdgpu1:amd64 (2.4.120-1) ... Setting up cpp-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libtirpc3:amd64 (1.3.4+ds-1) ... Setting up libxcb-dri3-0:amd64 (1.15-1) ... Setting up libpaper1:amd64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up gtk-update-icon-cache (3.24.41-1) ... Setting up libx11-xcb1:amd64 (2:1.8.7-1) ... Setting up libibverbs1:amd64 (48.0-1.1) ... Setting up fontconfig (2.14.2-6+b1) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.120-1) ... Setting up libxdamage1:amd64 (1:1.1.6-1) ... Setting up libxpm4:amd64 (1:3.5.17-1) ... Setting up cpp-13 (13.2.0-13) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up ibverbs-providers:amd64 (48.0-1.1) ... Setting up libdrm-radeon1:amd64 (2.4.120-1) ... Setting up openssh-client (1:9.6p1-3) ... Setting up gcc-13-x86-64-linux-gnu (13.2.0-13) ... Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... Setting up libdrm-intel1:amd64 (2.4.120-1) ... Setting up libgl1-mesa-dri:amd64 (23.3.4-1) ... Setting up libpq5:amd64 (16.1-1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libperl5.38:amd64 (5.38.2-3) ... Setting up libcurl3-gnutls:amd64 (8.5.0-2) ... Setting up rubygems-integration (1.18) ... Setting up binutils (2.42-2) ... Setting up hyphy-pt (2.5.59+dfsg-1) ... Setting up libpaper-utils (1.1.29) ... Setting up libaprutil1-ldap:amd64 (1.6.3-1+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libcairo2:amd64 (1.18.0-1+b1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxnvctrl0:amd64 (525.125.06-1) ... Setting up dbus-user-session (1.14.10-4) ... Setting up perl (5.38.2-3) ... Setting up libpackage-stash-xs-perl:amd64 (0.30-1+b2) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1) ... Setting up libset-object-perl (1.42-1+b3) ... Setting up adwaita-icon-theme (45.0-2) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libdata-dump-perl (1.25-1) ... Setting up libref-util-perl (0.204-2) ... Setting up libxfixes3:amd64 (1:6.0.0-2) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libxml-xpathengine-perl (0.14-2) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libraqm0:amd64 (0.10.1-1) ... Setting up libio-compress-brotli-perl (0.004001-2+b1) ... Setting up libxinerama1:amd64 (2:1.1.4-3) ... Setting up libdata-dumper-simple-perl (0.11-7) ... Setting up libencode-perl:amd64 (3.20-1+b1) ... Setting up libcrypt-rc4-perl (2.02-5) ... Setting up libxv1:amd64 (2:1.0.11-1.1) ... Setting up gcc-13 (13.2.0-13) ... Setting up libvariable-magic-perl (0.63-1+b2) ... Setting up libio-html-perl (1.004-3) ... Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ... Setting up libpod-parser-perl (1.67-1) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2+b2) ... Setting up libmath-vecstat-perl (0.08-3) ... Setting up liblist-moreutils-xs-perl (0.430-3+b2) ... Setting up libmath-derivative-perl (1.01-3) ... Setting up libxt6:amd64 (1:1.2.1-1.1) ... Setting up parallel (20231122+ds-1) ... Setting up libspiffy-perl (0.46-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libmath-round-perl (0.08-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libset-scalar-perl (1.29-3) ... Setting up libcups2:amd64 (2.4.7-1+b1) ... Setting up libsub-name-perl:amd64 (0.27-1+b1) ... Setting up libtype-tiny-xs-perl:amd64 (0.025-1+b1) ... Setting up libhdf5-103-1:amd64 (1.10.10+repack-3) ... Setting up libparse-recdescent-perl (1.967015+dfsg-4) ... Setting up xauth (1:1.1.2-1) ... Setting up libgdk-pixbuf2.0-bin (2.42.10+dfsg-3) ... Setting up cpp (4:13.2.0-7) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up mummer (3.23+dfsg-8) ... Setting up libtext-format-perl (0.62-1) ... Setting up libswiss-perl (1.80-1) ... Setting up libcarp-always-perl (0.16-1) ... Setting up libfcgi-perl (0.82+ds-2+b1) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libcarp-clan-perl (6.08-2) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b2) ... Setting up libcairo-gobject2:amd64 (1.18.0-1+b1) ... Setting up libgraphics-colornames-perl (3.5.0-3) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libexporter-tiny-perl (1.006002-1) ... Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... Setting up mailcap (3.70+nmu1) ... Setting up libpostscript-perl (0.06-3.1) ... Setting up libsort-naturally-perl (1.03-4) ... Setting up liburi-perl (5.25-1) ... Setting up libdbi-perl:amd64 (1.643-4+b1) ... Setting up libdate-manip-perl (6.94-1) ... Setting up libfile-sort-perl (1.01-3) ... Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... Setting up libmath-vec-perl (1.01-5) ... Setting up libtext-csv-perl (2.04-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-1) ... Setting up cd-hit (4.8.1-4) ... Setting up libmath-spline-perl (0.02-4) ... Setting up libjcode-pm-perl (2.06-1.1) ... Setting up libio-sessiondata-perl (1.03-3) ... Setting up librdmacm1:amd64 (48.0-1.1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libucx0:amd64 (1.15.0-1) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libhts3:amd64 (1.18+ds-1) ... Setting up libxmu6:amd64 (2:1.1.3-3) ... Setting up libfile-slurp-perl (9999.32-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libtie-ixhash-perl (1.23-4) ... Setting up libconfig-general-perl (2.65-2) ... Setting up libtask-weaken-perl (1.06-2) ... Setting up libglx-mesa0:amd64 (23.3.4-1) ... Setting up libset-intspan-perl (1.19-3) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.1-2) ... Setting up libtest-requiresinternet-perl (0.05-4) ... Setting up libconvert-binary-c-perl (0.84-1+b3) ... Setting up libxi6:amd64 (2:1.8-1+b1) ... Setting up gcc-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libglx0:amd64 (1.7.0-1) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libfont-afm-perl (1.20-4) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up libxml-regexp-perl (0.04-1.1) ... Setting up libref-util-xs-perl (0.117-2+b2) ... Setting up libalgorithm-munkres-perl (0.08-5) ... Setting up perl-tk (1:804.036+dfsg1-2) ... Setting up libio-pty-perl (1:1.20-1) ... Setting up mafft (7.505-1) ... Setting up libclone-perl:amd64 (0.46-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libsub-identify-perl (0.14-3+b1) ... Setting up libgetopt-simple-perl (1.52-7) ... Setting up libio-stringy-perl (2.111-3) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libxtst6:amd64 (2:1.2.3-1.1) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libauthen-sasl-perl (2.1700-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.7-2) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up python3.12 (3.12.1-2) ... Setting up libxcursor1:amd64 (1:1.2.1-1) ... Setting up libfile-slurp-tiny-perl (0.004-2) ... Setting up libipc-sharelite-perl (0.17-5+b1) ... Setting up libconvert-binhex-perl (1.125-3) ... Setting up libheap-perl (0.80-5) ... Setting up libpod-coverage-perl (0.23-2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.86+ds-1+b1) ... Setting up libtest-pod-perl (1.52-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libtype-tiny-perl (2.004000-1) ... Setting up libxxf86dga1:amd64 (2:1.1.5-1) ... Setting up perl-doc (5.38.2-3) ... Setting up libgraphics-colorobject-perl (0.5.0-10.1) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libsvg-perl (2.87-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libbsd-resource-perl (1.2911-2+b2) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libdbd-pg-perl (3.18.0-1+b1) ... Setting up dconf-service (0.40.0-4+b1) ... Setting up libtext-csv-xs-perl:amd64 (1.53-1+b1) ... Setting up fsa (1.15.9+dfsg-6) ... Setting up libnumber-format-perl (1.76-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up libio-all-perl (0.87-2) ... Setting up libatspi2.0-0:amd64 (2.50.0-1+b1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up libxstring-perl:amd64 (0.005-2+b2) ... Setting up libgraph-perl (1:0.9727-1) ... Setting up apache2-bin (2.4.58-1+b1) ... Setting up libhwloc-plugins:amd64 (2.10.0-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2+b1) ... Setting up libyaml-perl (1.31-1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libregexp-common-perl (2017060201-3) ... Setting up libmath-bezier-perl (0.01-4) ... Setting up libspreadsheet-writeexcel-perl (2.40-4) ... Setting up gcc (4:13.2.0-7) ... Setting up samtools (1.19-1) ... Setting up libbit-vector-perl:amd64 (7.4-2+b2) ... Setting up libfreezethaw-perl (0.5001-3) ... Setting up librsvg2-2:amd64 (2.54.7+dfsg-2) ... Setting up liberror-perl (0.17029-2) ... Setting up libdigest-perl-md5-perl (1.9-5) ... Setting up libatk-bridge2.0-0:amd64 (2.50.0-1+b1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libreadonly-perl (2.050-3) ... Setting up libunicode-map-perl (0.112-13+b2) ... Setting up libgl1:amd64 (1.7.0-1) ... Setting up libtest-exception-perl (0.43-3) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libdbd-mysql-perl:amd64 (4.052-1+b1) ... Setting up libipc-run-perl (20231003.0-1) ... Setting up librsvg2-common:amd64 (2.54.7+dfsg-2) ... Setting up openjdk-17-jre-headless:amd64 (17.0.10+7-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libole-storage-lite-perl (0.22-1) ... Setting up libspreadsheet-parseexcel-perl (0.6600-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libtree-dagnode-perl (1.32-1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up libnsl-dev:amd64 (1.3.0-3) ... Setting up pftools (3.2.12-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1+b1) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up x11-utils (7.7+6) ... Setting up libc6-dev:amd64 (2.37-15~deb13u1) ... Setting up libdbd-sqlite3-perl:amd64 (1.74-1+b1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libatk-wrapper-java (0.40.0-3) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up libalgorithm-diff-xs-perl:amd64 (0.04-8+b2) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up libstdc++-13-dev:amd64 (13.2.0-13) ... Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up libstatistics-basic-perl (1.6611-3) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libbio-perl-run-perl (1.7.3-9) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libgs10-common (10.02.1~dfsg-3) ... Setting up python3.11 (3.11.7-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libstatistics-descriptive-perl (3.0801-1) ... Setting up libdate-calc-perl (6.4-2) ... Setting up g++-13-x86-64-linux-gnu (13.2.0-13) ... Setting up libcache-cache-perl (1.08-3) ... Setting up dconf-gsettings-backend:amd64 (0.40.0-4+b1) ... Setting up libpmix2:amd64 (5.0.1-4) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libdate-calc-xs-perl:amd64 (6.4-2+b2) ... Setting up libgtk2.0-0:amd64 (2.24.33-3) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libopenmpi3:amd64 (4.1.6-5) ... Setting up blt (2.5.3+dfsg-7) ... Setting up libparams-classify-perl:amd64 (0.015-2+b2) ... Setting up libcgi-pm-perl (4.61-1) ... Setting up libtest-differences-perl (0.71-1) ... Setting up python3 (3.11.6-1) ... Setting up libhtml-format-perl (2.16-2) ... Setting up python3-freetype (2.4.0-1) ... Setting up python3-markupsafe (2.1.3-1+b1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up python3-webencodings (0.5.1-5) ... Setting up python3-psutil (5.9.8-1) ... Setting up python3-tz (2023.4-1) ... Setting up libatk-wrapper-java-jni:amd64 (0.40.0-3) ... Setting up bowtie2 (2.5.2-1) ... Setting up ncbi-blast+ (2.12.0+ds-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-simplejson (3.19.2-1+b1) ... Setting up libbio-tools-run-alignment-clustalw-perl (1.7.4-3) ... Setting up python3-pil:amd64 (10.2.0-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.2-1) ... Setting up libbio-searchio-hmmer-perl (1.7.3-2) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libmailtools-perl (2.21-2) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.4.4-1+b2) ... Setting up libxml-filter-buffertext-perl (1.01-7) ... Setting up libace-perl (1.92-11+b3) ... Setting up python3-html5lib (1.1-3) ... Setting up python3-pluggy (1.3.0-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhtml-tableextract-perl (2.15-2) ... Setting up libgail18:amd64 (2.24.33-3) ... Setting up libhttp-daemon-perl (6.16-1) ... Setting up libgtk2.0-bin (2.24.33-3) ... Setting up python3-lxml:amd64 (5.1.0-1) ... Setting up python3-et-xmlfile (1.0.1-2.1) ... Setting up g++-x86-64-linux-gnu (4:13.2.0-7) ... Setting up python3-dateutil (2.8.2-3) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-cssselect (1.2.0-2) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-soupsieve (2.5-1) ... Setting up openmpi-bin (4.1.6-5) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20220408-3) ... Setting up libgs10:amd64 (10.02.1~dfsg-3) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up ncbi-blast+-legacy (2.12.0+ds-4) ... Setting up gsettings-desktop-schemas (45.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.12-7) ... Setting up mesa-vulkan-drivers:amd64 (23.3.4-1) ... Setting up python3-attr (23.2.0-1) ... Setting up libxml-sax-writer-perl (0.57-2) ... Setting up libsvg-graph-perl (0.02-4) ... Setting up g++-13 (13.2.0-13) ... Setting up python3-cairo (1.25.1-2) ... Setting up bowtie (1.3.1-3) ... Setting up python3-joblib (1.3.2-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up python3-babel (2.10.3-3) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up libgail-common:amd64 (2.24.33-3) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up libtest-most-perl (0.38-1) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up libcgi-fast-perl (1:2.17-1) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up python3-pytest (7.4.4-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up python3-olefile (0.46-3) ... Setting up isympy-common (1.12-7) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-tk:amd64 (3.11.5-1) ... Setting up ghostscript (10.02.1~dfsg-3) ... Setting up libmime-tools-perl (5.512-1) ... Setting up python3-bs4 (4.12.3-1) ... Setting up python3-fs (2.4.16-3) ... Setting up libarray-compare-perl (3.0.8-1) ... Setting up liblist-someutils-xs-perl:amd64 (0.58-3+b1) ... Setting up python3-pygments (2.15.1+dfsg-1) ... Setting up liblist-allutils-perl (0.19-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:amd64 (10.2.0-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-openpyxl (3.1.2+dfsg-5) ... Setting up isympy3 (1.12-7) ... Setting up libxml-simple-perl (2.25-2) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up libxml-libxslt-perl:amd64 (2.002001-1+b1) ... Setting up python3-reportlab (4.0.9-1) ... Setting up g++ (4:13.2.0-7) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up at-spi2-core (2.50.0-1+b1) ... Setting up spades (3.15.5+dfsg-7) ... Setting up python3-contourpy (1.0.7-1+b2) ... Setting up libparams-validate-perl:amd64 (1.31-2+b1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up python3-odf (1.4.2-2) ... Setting up bioperl (1.7.8-1) ... Setting up python3-scipy (1.10.1-10) ... Setting up python3-tables-lib (3.7.0-10+b1) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-12) ... Setting up python-odf-tools (1.4.2-2) ... Setting up python3-pandas (1.5.3+dfsg-12) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up python3-bottleneck (1.3.5+ds1-3+b1) ... Setting up python3-numexpr (2.9.0-1) ... Setting up python3-tables (3.7.0-10) ... Setting up python3-fonttools (4.46.0-1) ... Setting up rake (13.0.6-3) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up libheif-plugin-dav1d:amd64 (1.17.6-1) ... Setting up liblwp-protocol-https-perl (6.11-1) ... Setting up libheif-plugin-libde265:amd64 (1.17.6-1) ... Setting up libruby3.1:amd64 (3.1.2-8) ... Setting up python3-matplotlib (3.6.3-1+b2) ... Setting up libruby:amd64 (1:3.1) ... Setting up libwww-perl (6.73-1) ... Setting up libheif1:amd64 (1.17.6-1) ... Setting up libapache2-mod-perl2 (2.0.13-1+b1) ... Setting up libgd3:amd64 (2.3.3-9+b1) ... Setting up libapache2-reload-perl (0.14-1) ... Setting up libgvc6 (2.42.2-8) ... Setting up libbio-tools-run-remoteblast-perl (1.7.3-3) ... Setting up ruby3.1 (3.1.2-8) ... Setting up emboss-lib (6.6.0+dfsg-12) ... Setting up libc-devtools (2.37-15~deb13u1) ... Setting up ruby-sdbm:amd64 (1.0.0-5+b2) ... Setting up graphviz (2.42.2-8) ... Setting up libxml-parser-perl (2.47-1+b1) ... Setting up emboss (6.6.0+dfsg-12) ... Setting up libheif-plugin-x265:amd64 (1.17.6-1) ... Setting up libheif-plugin-aomenc:amd64 (1.17.6-1) ... Setting up libxml-twig-perl (1:3.52-2) ... Setting up libxml-xpath-perl (1.48-1) ... Setting up libbio-variation-perl (1.7.5-3) ... Setting up libapache-dbi-perl (1.12-3) ... Setting up libgd-perl (2.78-1+b1) ... Setting up ruby (1:3.1) ... Setting up libxml-sax-expat-perl (0.51-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-perl (0.08-4) ... Setting up libsoap-lite-perl (1.27-3) ... Setting up libgraphviz-perl (2.24-1) ... Setting up circos (0.69.9+dfsg-2) ... Setting up libbio-cluster-perl (1.7.3-6) ... Setting up circos-tools (0.23-1) ... Setting up libxml-dom-perl (1.46-2) ... Setting up libbio-asn1-entrezgene-perl (1.730-2) ... Setting up ruby-rubygems (3.4.20-1) ... Setting up libxml-dom-xpath-perl (0.14-4) ... Setting up libbio-eutilities-perl (1.77-2) ... Setting up libxmlrpc-lite-perl (0.717-5) ... Setting up libbio-featureio-perl (1.6.905-2) ... Processing triggers for libc-bin (2.37-15~deb13u1) ... Processing triggers for systemd (255.3-1) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-17-jdk-headless:amd64 (17.0.10+7-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.17-75) ... Setting up openjdk-17-jre:amd64 (17.0.10+7-1) ... Setting up default-jre (2:1.17-75) ... Setting up default-jdk-headless (2:1.17-75) ... Setting up bioperl-run (1.7.3-9) ... Setting up trimmomatic (0.39+dfsg-2) ... Setting up prokka (1.14.6+dfsg-6) ... Setting up plasmidid (1.6.5+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.81+dfsg-3) ... Processing triggers for menu (2.1.50) ... Setting up blends-common (0.7.6) ... Setting up med-config (3.8.1) ... info: Selecting GID from range 100 to 999 ... info: Adding group `med' (GID 153) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-3) ... Processing triggers for ca-certificates-java (20240118) ... done. 4m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-get', '-y', 'install', 'plasmidid=1.6.5+dfsg-2'] 4m32.6s INFO: Running scripts post_install 4m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_install_exceptions'] 4m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_install_exceptions'] 4m32.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp97__jce4'] 4m35.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp97__jce4'] 4m41.0s ERROR: WARN: Broken symlinks: /etc/vconsole.conf -> default/keyboard /etc/default/locale -> ../locale.conf /usr/lib/jvm/java-17-openjdk-amd64/lib/src.zip -> ../../openjdk-17/src.zip (openjdk-17-jdk-headless:amd64) 4m41.1s INFO: /bin converted to /usr/bin by /usr merge 4m41.2s INFO: /lib converted to /usr/lib by /usr merge 4m41.2s INFO: /lib/firmware converted to /usr/lib/firmware by /usr merge 4m41.2s INFO: /lib/init converted to /usr/lib/init by /usr merge 4m41.2s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 4m41.2s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 4m41.2s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 4m41.2s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 4m41.2s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 4m41.2s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 4m41.2s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 4m41.2s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 4m41.2s INFO: /lib64 converted to /usr/lib64 by /usr merge 4m41.2s INFO: /sbin converted to /usr/sbin by /usr merge 4m44.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp97__jce4', '-ac', '--ignore-obsolete'] 4m56.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp97__jce4', '-ac', '--ignore-obsolete'] 4m56.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 4m56.3s DUMP: 0.15.6 4m56.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 4m56.3s INFO: Running adequate version 0.15.6 now. 4m56.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'plasmidid'] 4m56.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'plasmidid'] 4m56.4s INFO: Running scripts pre_remove 4m56.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 4m56.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 4m56.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 4m56.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 4m56.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 5m28.0s DUMP: UNOWNED SYMLINK /usr/lib/x86_64-linux-gnu/libmpi_usempi_ignore_tkr-gfortranso.40 -> libmpi_usempi_ignore_tkr-gfortran.so.40.30.0 5m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 5m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 5m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 5m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 5m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 5m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_remove_exceptions'] 5m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/pre_remove_exceptions'] 5m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 5m28.5s DUMP: install ok installed adduser adduser 3.137 install ok installed adwaita-icon-theme adwaita-icon-theme 45.0-2 install ok installed alsa-topology-conf alsa-topology-conf 1.2.5.1-2 install ok installed alsa-ucm-conf alsa-ucm-conf 1.2.10-1 install ok installed amap-align amap-align 2.2+git20080214.600fc29+dfsg-2 install ok installed apache2-bin apache2-bin 2.4.58-1+b1 install ok installed apt apt 2.7.10 install ok installed aragorn aragorn 1.2.41-2 install ok installed at-spi2-common at-spi2-common 2.50.0-1 install ok installed at-spi2-core at-spi2-core 2.50.0-1+b1 install ok installed bamtools bamtools 2.5.2+dfsg-5 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bedtools bedtools 2.31.1+dfsg-2 install ok installed binutils binutils 2.42-2 install ok installed binutils-common:amd64 binutils-common 2.42-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.42-2 install ok installed bioperl bioperl 1.7.8-1 install ok installed bioperl-run bioperl-run 1.7.3-9 install ok installed blends-common blends-common 0.7.6 install ok installed blt blt 2.5.3+dfsg-7 install ok installed bowtie bowtie 1.3.1-3 install ok installed bowtie2 bowtie2 2.5.2-1 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed bwa bwa 0.7.17-7+b3 install ok installed bzip2 bzip2 1.0.8-5+b2 install ok installed ca-certificates ca-certificates 20230311 install ok installed ca-certificates-java ca-certificates-java 20240118 install ok installed cd-hit cd-hit 4.8.1-4 install ok installed circos circos 0.69.9+dfsg-2 install ok installed circos-tools circos-tools 0.23-1 install ok installed clustalo clustalo 1.2.4-8 install ok installed clustalw clustalw 2.1+lgpl-7 install ok installed coreutils coreutils 9.4-3+b1 install ok installed cpp cpp 4:13.2.0-7 install ok installed cpp-13 cpp-13 13.2.0-13 install ok installed cpp-13-x86-64-linux-gnu cpp-13-x86-64-linux-gnu 13.2.0-13 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:13.2.0-7 install ok installed dash dash 0.5.12-6 install ok installed dbus dbus 1.14.10-4 install ok installed dbus-bin dbus-bin 1.14.10-4 install ok installed dbus-daemon dbus-daemon 1.14.10-4 install ok installed dbus-session-bus-common dbus-session-bus-common 1.14.10-4 install ok installed dbus-system-bus-common dbus-system-bus-common 1.14.10-4 install ok installed dbus-user-session dbus-user-session 1.14.10-4 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.40.0-4+b1 install ok installed dconf-service dconf-service 0.40.0-4+b1 install ok installed debconf debconf 1.5.83 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed default-jdk-headless default-jdk-headless 2:1.17-75 install ok installed default-jre default-jre 2:1.17-75 install ok installed default-jre-headless default-jre-headless 2:1.17-75 install ok installed dialign dialign 2.2.1-11 install ok installed dialign-tx dialign-tx 1.0.2-14+b1 install ok installed dialign-tx-data dialign-tx-data 1.0.2-14 install ok installed diffutils diffutils 1:3.10-1 install ok installed dmsetup dmsetup 2:1.02.185-3 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed emboss emboss 6.6.0+dfsg-12 install ok installed emboss-data emboss-data 6.6.0+dfsg-12 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-12 install ok installed exonerate exonerate 2.4.0-5 install ok installed file file 1:5.45-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig fontconfig 2.14.2-6+b1 install ok installed fontconfig-config fontconfig-config 2.14.2-6+b1 install ok installed fonts-circos-symbols fonts-circos-symbols 0.69.9+dfsg-2 install ok installed fonts-cmu fonts-cmu 0.7.0-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-droid-fallback fonts-droid-fallback 1:6.0.1r16-1.1 install ok installed fonts-lato fonts-lato 2.015-1 install ok installed fonts-liberation fonts-liberation 1:2.1.5-3 install ok installed fonts-liberation-sans-narrow fonts-liberation-sans-narrow 1:1.07.6-4 install ok installed fonts-liberation2 fonts-liberation2 1:2.1.5-3 install ok installed fonts-lyx fonts-lyx 2.4.0~RC1-2 install ok installed fonts-noto-mono fonts-noto-mono 20201225-2 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-7 install ok installed fsa fsa 1.15.9+dfsg-6 install ok installed g++ g++ 4:13.2.0-7 install ok installed g++-13 g++-13 13.2.0-13 install ok installed g++-13-x86-64-linux-gnu g++-13-x86-64-linux-gnu 13.2.0-13 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:13.2.0-7 install ok installed gawk gawk 1:5.2.1-2 install ok installed gcc gcc 4:13.2.0-7 install ok installed gcc-13 gcc-13 13.2.0-13 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-13 install ok installed gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu 13.2.0-13 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:13.2.0-7 install ok installed ghostscript ghostscript 10.02.1~dfsg-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed graphviz graphviz 2.42.2-8 install ok installed grep grep 3.11-4 install ok installed gsettings-desktop-schemas gsettings-desktop-schemas 45.0-2 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.24.41-1 install ok installed gzip gzip 1.12-1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.17-2 install ok installed hmmer hmmer 3.4+dfsg-2 install ok installed hostname hostname 3.23+nmu2 install ok installed hyphy-common hyphy-common 2.5.59+dfsg-1 install ok installed hyphy-pt hyphy-pt 2.5.59+dfsg-1 install ok installed ibverbs-providers:amd64 ibverbs-providers 48.0-1.1 install ok installed infernal infernal 1.1.5-2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed isympy-common isympy-common 1.12-7 install ok installed isympy3 isympy3 1.12-7 install ok installed java-common java-common 0.75 install ok installed javascript-common javascript-common 11+nmu1 install ok installed kalign kalign 1:3.3.5-1 install ok installed krb5-locales krb5-locales 1.20.1-5 install ok installed lagan lagan 2.0-9 install ok installed less less 590-2 install ok installed libabsl20220623:amd64 libabsl20220623 20220623.1-3 install ok installed libace-perl libace-perl 1.92-11+b3 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libaec0:amd64 libaec0 1.1.2-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl:amd64 libalgorithm-diff-xs-perl 0.04-8+b2 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-5 install ok installed libann0 libann0 1.1.2+doc-9+b1 install ok installed libaom3:amd64 libaom3 3.8.1-1 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-3 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.13-1+b1 install ok installed libapache2-reload-perl libapache2-reload-perl 0.14-1 install ok installed libapparmor1:amd64 libapparmor1 3.0.12-1+b2 install ok installed libapr1:amd64 libapr1 1.7.2-3+b2 install ok installed libaprutil1:amd64 libaprutil1 1.6.3-1+b1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.6.3-1+b1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.6.3-1+b1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.10 install ok installed libargon2-1:amd64 libargon2-1 0~20190702+dfsg-4+b1 install ok installed libargtable2-0 libargtable2-0 13-1.1 install ok installed libarray-compare-perl libarray-compare-perl 3.0.8-1 install ok installed libasan8:amd64 libasan8 14-20240201-3 install ok installed libasound2:amd64 libasound2 1.2.10-3 install ok installed libasound2-data libasound2-data 1.2.10-3 install ok installed libatk-bridge2.0-0:amd64 libatk-bridge2.0-0 2.50.0-1+b1 install ok installed libatk-wrapper-java libatk-wrapper-java 0.40.0-3 install ok installed libatk-wrapper-java-jni:amd64 libatk-wrapper-java-jni 0.40.0-3 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.50.0-1+b1 install ok installed libatomic1:amd64 libatomic1 14-20240201-3 install ok installed libatspi2.0-0:amd64 libatspi2.0-0 2.50.0-1+b1 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1700-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-13+b1 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-13+b1 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-13+b1 install ok installed libavif16:amd64 libavif16 1.0.3-1 install ok installed libb-hooks-endofscope-perl libb-hooks-endofscope-perl 0.26-1 install ok installed libb-hooks-op-check-perl:amd64 libb-hooks-op-check-perl 0.22-2+b2 install ok installed libbamtools2.5.2:amd64 libbamtools2.5.2 2.5.2+dfsg-5 install ok installed libbinutils:amd64 libbinutils 2.42-2 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.730-2 install ok installed libbio-cluster-perl libbio-cluster-perl 1.7.3-6 install ok installed libbio-eutilities-perl libbio-eutilities-perl 1.77-2 install ok installed libbio-featureio-perl libbio-featureio-perl 1.6.905-2 install ok installed libbio-perl-perl libbio-perl-perl 1.7.8-1 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.7.3-9 install ok installed libbio-searchio-hmmer-perl libbio-searchio-hmmer-perl 1.7.3-2 install ok installed libbio-tools-run-alignment-clustalw-perl libbio-tools-run-alignment-clustalw-perl 1.7.4-3 install ok installed libbio-tools-run-remoteblast-perl libbio-tools-run-remoteblast-perl 1.7.3-3 install ok installed libbio-variation-perl libbio-variation-perl 1.7.5-3 install ok installed libbit-vector-perl:amd64 libbit-vector-perl 7.4-2+b2 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-1+b1 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2911-2+b2 install ok installed libbsd0:amd64 libbsd0 0.11.8-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15~deb13u1 install ok installed libc-dev-bin libc-dev-bin 2.37-15~deb13u1 install ok installed libc-devtools libc-devtools 2.37-15~deb13u1 install ok installed libc6:amd64 libc6 2.37-15~deb13u1 install ok installed libc6-dev:amd64 libc6-dev 2.37-15~deb13u1 install ok installed libcache-cache-perl libcache-cache-perl 1.08-3 install ok installed libcairo-gobject2:amd64 libcairo-gobject2 1.18.0-1+b1 install ok installed libcairo2:amd64 libcairo2 1.18.0-1+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-1 install ok installed libcap2:amd64 libcap2 1:2.66-4+b2 install ok installed libcapnp-1.0.1:amd64 libcapnp-1.0.1 1.0.1-3+b1 install ok installed libcapture-tiny-perl libcapture-tiny-perl 0.48-2 install ok installed libcarp-always-perl libcarp-always-perl 0.16-1 install ok installed libcarp-clan-perl libcarp-clan-perl 6.08-2 install ok installed libcbor0.10:amd64 libcbor0.10 0.10.2-1.1 install ok installed libcc1-0:amd64 libcc1-0 14-20240201-3 install ok installed libcdt5:amd64 libcdt5 2.42.2-8 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.17-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.61-1 install ok installed libcgraph6:amd64 libcgraph6 2.42.2-8 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-3 install ok installed libclass-inspector-perl libclass-inspector-perl 1.36-3 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.15-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-4+b2 install ok installed libclone-perl:amd64 libclone-perl 0.46-1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libconfig-general-perl libconfig-general-perl 2.65-2 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.84-1+b3 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-3 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-4 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-5 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcryptsetup12:amd64 libcryptsetup12 2:2.6.1-6+b1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.42-2 install ok installed libctf0:amd64 libctf0 2.42-2 install ok installed libcups2:amd64 libcups2 2.4.7-1+b1 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 8.5.0-2 install ok installed libcurl4:amd64 libcurl4 8.5.0-2 install ok installed libdata-dump-perl libdata-dump-perl 1.25-1 install ok installed libdata-dumper-simple-perl libdata-dumper-simple-perl 0.11-7 install ok installed libdata-stag-perl libdata-stag-perl 0.14-3 install ok installed libdate-calc-perl libdate-calc-perl 6.4-2 install ok installed libdate-calc-xs-perl:amd64 libdate-calc-xs-perl 6.4-2+b2 install ok installed libdate-manip-perl libdate-manip-perl 6.94-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3 install ok installed libdav1d7:amd64 libdav1d7 1.3.0-2+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdbd-mysql-perl:amd64 libdbd-mysql-perl 4.052-1+b1 install ok installed libdbd-pg-perl libdbd-pg-perl 3.18.0-1+b1 install ok installed libdbd-sqlite3-perl:amd64 libdbd-sqlite3-perl 1.74-1+b1 install ok installed libdbi-perl:amd64 libdbi-perl 1.643-4+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.10-4 install ok installed libdconf1:amd64 libdconf1 0.40.0-4+b1 install ok installed libde265-0:amd64 libde265-0 1.0.15-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libdeflate0:amd64 libdeflate0 1.19-1 install ok installed libdevel-callchecker-perl:amd64 libdevel-callchecker-perl 0.008-2+b1 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0500-1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.18-5 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.185-3 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-5 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-5 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.120-1 install ok installed libdrm-common libdrm-common 2.4.120-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.120-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.120-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.120-1 install ok installed libdrm2:amd64 libdrm2 2.4.120-1 install ok installed libdynaloader-functions-perl libdynaloader-functions-perl 0.003-3 install ok installed libedit2:amd64 libedit2 3.1-20230828-1 install ok installed libelf1:amd64 libelf1 0.190-1+b1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-3 install ok installed libencode-perl:amd64 libencode-perl 3.20-1+b1 install ok installed liberror-perl liberror-perl 0.17029-2 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-8 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-8 install ok installed libexception-class-perl libexception-class-perl 1.45-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-2+b2 install ok installed libexporter-tiny-perl libexporter-tiny-perl 1.006002-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libfabric1:amd64 libfabric1 1.17.0-3 install ok installed libfcgi-bin libfcgi-bin 2.4.2-2 install ok installed libfcgi-perl libfcgi-perl 0.82+ds-2+b1 install ok installed libfcgi0ldbl:amd64 libfcgi0ldbl 2.4.2-2 install ok installed libfdisk1:amd64 libfdisk1 2.39.3-6 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libfido2-1:amd64 libfido2-1 1.14.0-1 install ok installed libfile-basedir-perl libfile-basedir-perl 0.09-2 install ok installed libfile-listing-perl libfile-listing-perl 6.16-1 install ok installed libfile-slurp-perl libfile-slurp-perl 9999.32-2 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.004-2 install ok installed libfile-sort-perl libfile-sort-perl 1.01-3 install ok installed libfont-afm-perl libfont-afm-perl 1.20-4 install ok installed libfont-ttf-perl libfont-ttf-perl 1.06-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.14.2-6+b1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.4-1+b2 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b1 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3+b1 install ok installed libgail-common:amd64 libgail-common 2.24.33-3 install ok installed libgail18:amd64 libgail18 2.24.33-3 install ok installed libgav1-1:amd64 libgav1-1 0.18.0-1+b1 install ok installed libgcc-13-dev:amd64 libgcc-13-dev 13.2.0-13 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgd-perl libgd-perl 2.78-1+b1 install ok installed libgd3:amd64 libgd3 2.3.3-9+b1 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-5 install ok installed libgdbm6:amd64 libgdbm6 1.23-5 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.10+dfsg-3 install ok installed libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-bin 2.42.10+dfsg-3 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.10+dfsg-3 install ok installed libgetopt-simple-perl libgetopt-simple-perl 1.52-7 install ok installed libgfortran5:amd64 libgfortran5 14-20240201-3 install ok installed libgif7:amd64 libgif7 5.2.1-2.5 install ok installed libgl1:amd64 libgl1 1.7.0-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 23.3.4-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 23.3.4-1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.78.3-2 install ok installed libglib2.0-data libglib2.0-data 2.78.3-2 install ok installed libglvnd0:amd64 libglvnd0 1.7.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 23.3.4-1 install ok installed libglx0:amd64 libglx0 1.7.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgomp1:amd64 libgomp1 14-20240201-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgpm2:amd64 libgpm2 1.20.7-10+b2 install ok installed libgprofng0:amd64 libgprofng0 2.42-2 install ok installed libgraph-perl libgraph-perl 1:0.9727-1 install ok installed libgraphics-colornames-perl libgraphics-colornames-perl 3.5.0-3 install ok installed libgraphics-colorobject-perl libgraphics-colorobject-perl 0.5.0-10.1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgraphviz-perl libgraphviz-perl 2.24-1 install ok installed libgs-common libgs-common 10.02.1~dfsg-3 install ok installed libgs10:amd64 libgs10 10.02.1~dfsg-3 install ok installed libgs10-common libgs10-common 10.02.1~dfsg-3 install ok installed libgsl27:amd64 libgsl27 2.7.1+dfsg-6 install ok installed libgslcblas0:amd64 libgslcblas0 2.7.1+dfsg-6 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5 install ok installed libgtk2.0-0:amd64 libgtk2.0-0 2.24.33-3 install ok installed libgtk2.0-bin libgtk2.0-bin 2.24.33-3 install ok installed libgtk2.0-common libgtk2.0-common 2.24.33-3 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-5+b1 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-5+b1 install ok installed libgvc6 libgvc6 2.42.2-8 install ok installed libgvpr2:amd64 libgvpr2 2.42.2-8 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.10+repack-3 install ok installed libheap-perl libheap-perl 0.80-5 install ok installed libheif-plugin-aomenc:amd64 libheif-plugin-aomenc 1.17.6-1 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.17.6-1 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.17.6-1 install ok installed libheif-plugin-x265:amd64 libheif-plugin-x265 1.17.6-1 install ok installed libheif1:amd64 libheif1 1.17.6-1 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libhpdf-2.3.0:amd64 libhpdf-2.3.0 2.3.0+dfsg-1+b1 install ok installed libhtml-form-perl libhtml-form-perl 6.11-1 install ok installed libhtml-format-perl libhtml-format-perl 2.16-2 install ok installed libhtml-parser-perl:amd64 libhtml-parser-perl 3.81-1+b1 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.15-2 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-6 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-3 install ok installed libhts3:amd64 libhts3 1.18+ds-1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.0-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.11-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.16-1 install ok installed libhttp-date-perl libhttp-date-perl 6.06-1 install ok installed libhttp-message-perl libhttp-message-perl 6.45-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-2 install ok installed libhwasan0:amd64 libhwasan0 14-20240201-3 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.10.0-1 install ok installed libhwloc15:amd64 libhwloc15 2.10.0-1 install ok installed libibverbs1:amd64 libibverbs1 48.0-1.1 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu72:amd64 libicu72 72.1-4 install ok installed libidn12:amd64 libidn12 1.42-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-15.1 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1 install ok installed libimport-into-perl libimport-into-perl 1.002005-2 install ok installed libio-all-perl libio-all-perl 0.87-2 install ok installed libio-compress-brotli-perl libio-compress-brotli-perl 0.004001-2+b1 install ok installed libio-html-perl libio-html-perl 1.004-3 install ok installed libio-pty-perl libio-pty-perl 1:1.20-1 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-3 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.085-1 install ok installed libio-string-perl libio-string-perl 1.08-4 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libipc-run-perl libipc-run-perl 20231003.0-1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-5+b1 install ok installed libipc-system-simple-perl libipc-system-simple-perl 1.30-2 install ok installed libisl23:amd64 libisl23 0.26-3+b2 install ok installed libitm1:amd64 libitm1 14-20240201-3 install ok installed libjansson4:amd64 libjansson4 2.14-2+b2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.20-1 install ok installed libjbzip2-java libjbzip2-java 0.9.1-8 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2+b2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjson-c5:amd64 libjson-c5 0.17-1 install ok installed libjsoncpp25:amd64 libjsoncpp25 1.9.5-6+b2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2+b2 install ok installed libkmod2:amd64 libkmod2 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liblist-utilsby-perl 0.12-2 install ok installed libllvm17:amd64 libllvm17 1:17.0.6-5 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1 install ok installed liblsan0:amd64 liblsan0 14-20240201-3 install ok installed libltdl7:amd64 libltdl7 2.4.7-7 install ok installed liblua5.3-0:amd64 liblua5.3-0 5.3.6-2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-2 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.11-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-2 install ok installed libmagic-mgc libmagic-mgc 1:5.45-2+b1 install ok installed libmagic1:amd64 libmagic1 1:5.45-2+b1 install ok installed libmailtools-perl libmailtools-perl 2.21-2 install ok installed libmariadb3:amd64 libmariadb3 1:10.11.6-2 install ok installed libmath-bezier-perl libmath-bezier-perl 0.01-4 install ok installed libmath-derivative-perl libmath-derivative-perl 1.01-3 install ok installed libmath-round-perl libmath-round-perl 0.08-1 install ok installed libmath-spline-perl libmath-spline-perl 0.02-4 install ok installed libmath-vec-perl libmath-vec-perl 1.01-5 install ok installed libmath-vecstat-perl libmath-vecstat-perl 0.08-3 install ok installed libmbedcrypto7:amd64 libmbedcrypto7 2.28.7-1 install ok installed libmbedtls14:amd64 libmbedtls14 2.28.7-1 install ok installed libmbedx509-1:amd64 libmbedx509-1 2.28.7-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmime-tools-perl libmime-tools-perl 5.512-1 install ok installed libmldbm-perl libmldbm-perl 2.05-4 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-2 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.016-2 install ok installed libmoo-perl libmoo-perl 2.005005-1 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libmpc3:amd64 libmpc3 1.3.1-1+b2 install ok installed libmpfr6:amd64 libmpfr6 4.2.1-1 install ok installed libmunge2:amd64 libmunge2 0.5.15-3 install ok installed libmurmurhash2:amd64 libmurmurhash2 1.5-3 install ok installed libnamespace-clean-perl libnamespace-clean-perl 0.27-2 install ok installed libncbi6:amd64 libncbi6 6.1.20170106+dfsg1-10 install ok installed libncurses6:amd64 libncurses6 6.4+20240113-1 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240113-1 install ok installed libnet-http-perl libnet-http-perl 6.23-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-2 install ok installed libnet-ssleay-perl:amd64 libnet-ssleay-perl 1.94-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.59.0-1 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-0.3 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-0.3 install ok installed libnlopt0:amd64 libnlopt0 2.7.1-5+b2 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-3 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libnspr4:amd64 libnspr4 2:4.35-1.1 install ok installed libnss-systemd:amd64 libnss-systemd 255.3-1 install ok installed libnss3:amd64 libnss3 2:3.96.1-1 install ok installed libnuma1:amd64 libnuma1 2.0.16-1 install ok installed libnumber-format-perl libnumber-format-perl 1.76-1 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.22-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b2 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.6-5 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpackage-stash-perl libpackage-stash-perl 0.40-1 install ok installed libpackage-stash-xs-perl:amd64 libpackage-stash-xs-perl 0.30-1+b2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam-systemd:amd64 libpam-systemd 255.3-1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.51.0+ds-4 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.51.0+ds-4 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.51.0+ds-4 install ok installed libpaper-utils libpaper-utils 1.1.29 install ok installed libpaper1:amd64 libpaper1 1.1.29 install ok installed libparams-classify-perl:amd64 libparams-classify-perl 0.015-2+b2 install ok installed libparams-validate-perl:amd64 libparams-validate-perl 1.31-2+b1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967015+dfsg-4 install ok installed libpathplan4:amd64 libpathplan4 2.42.2-8 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libpcsclite1:amd64 libpcsclite1 2.0.1-1 install ok installed libperl5.38:amd64 libperl5.38 5.38.2-3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1 install ok installed libpmix2:amd64 libpmix2 5.0.1-4 install ok installed libpng16-16:amd64 libpng16-16 1.6.40-3 install ok installed libpod-coverage-perl libpod-coverage-perl 0.23-2 install ok installed libpod-parser-perl libpod-parser-perl 1.67-1 install ok installed libpostscript-perl libpostscript-perl 0.06-3.1 install ok installed libpq5:amd64 libpq5 16.1-1+b1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-4 install ok installed libpsl5:amd64 libpsl5 0.21.2-1+b1 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.3 install ok installed libpsm2-2 libpsm2-2 11.2.185-2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.6-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.7-2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.7-2 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.1-2 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.1-2 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6 install ok installed libquadmath0:amd64 libquadmath0 14-20240201-3 install ok installed libraqm0:amd64 libraqm0 0.10.1-1 install ok installed librav1e0:amd64 librav1e0 0.6.6-7 install ok installed librdmacm1:amd64 librdmacm1 48.0-1.1 install ok installed libreadline8:amd64 libreadline8 8.2-3 install ok installed libreadonly-perl libreadonly-perl 2.050-3 install ok installed libref-util-perl libref-util-perl 0.204-2 install ok installed libref-util-xs-perl libref-util-xs-perl 0.117-2+b2 install ok installed libregexp-common-perl libregexp-common-perl 2017060201-3 install ok installed librole-tiny-perl librole-tiny-perl 2.002004-1 install ok installed librsvg2-2:amd64 librsvg2-2 2.54.7+dfsg-2 install ok installed librsvg2-common:amd64 librsvg2-common 2.54.7+dfsg-2 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libruby:amd64 libruby 1:3.1 install ok installed libruby3.1:amd64 libruby3.1 3.1.2-8 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-4+b1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.28+dfsg1-4+b1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsensors-config libsensors-config 1:3.6.0-8 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-8 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libset-intspan-perl libset-intspan-perl 1.19-3 install ok installed libset-object-perl libset-object-perl 1.42-1+b3 install ok installed libset-scalar-perl libset-scalar-perl 1.29-3 install ok installed libsframe1:amd64 libsframe1 2.42-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.3.2-0.3 install ok installed libsigsegv2:amd64 libsigsegv2 2.14-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.10-1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.27-3 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-4 install ok installed libspiffy-perl libspiffy-perl 0.46-1 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6600-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.0-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.11.0-4 install ok installed libssl3:amd64 libssl3 3.1.4-2 install ok installed libssw0:amd64 libssw0 1.1-14 install ok installed libstatistics-basic-perl libstatistics-basic-perl 1.6611-3 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0801-1 install ok installed libstdc++-13-dev:amd64 libstdc++-13-dev 13.2.0-13 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-3 install ok installed libsub-identify-perl libsub-identify-perl 0.14-3+b1 install ok installed libsub-name-perl:amd64 libsub-name-perl 0.27-1+b1 install ok installed libsub-quote-perl libsub-quote-perl 2.006008-1 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2800-3 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-4 install ok installed libsvg-perl libsvg-perl 2.87-1 install ok installed libsvtav1enc1d1:amd64 libsvtav1enc1d1 1.7.0+dfsg-2 install ok installed libswiss-perl libswiss-perl 1.80-1 install ok installed libsystemd-shared:amd64 libsystemd-shared 255.3-1 install ok installed libsystemd0:amd64 libsystemd0 255.3-1 install ok installed libsz2:amd64 libsz2 1.1.2-1 install ok installed libtask-weaken-perl libtask-weaken-perl 1.06-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.13+dfsg-2 install ok installed libtest-deep-perl libtest-deep-perl 1.204-1 install ok installed libtest-differences-perl libtest-differences-perl 0.71-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-3 install ok installed libtest-most-perl libtest-most-perl 0.38-1 install ok installed libtest-pod-perl libtest-pod-perl 1.52-2 install ok installed libtest-requiresinternet-perl libtest-requiresinternet-perl 0.05-4 install ok installed libtest-warn-perl libtest-warn-perl 0.37-2 install ok installed libtext-csv-perl libtext-csv-perl 2.04-1 install ok installed libtext-csv-xs-perl:amd64 libtext-csv-xs-perl 1.53-1+b1 install ok installed libtext-diff-perl libtext-diff-perl 1.45-2 install ok installed libtext-format-perl libtext-format-perl 0.62-1 install ok installed libtext-iconv-perl:amd64 libtext-iconv-perl 1.7-8+b2 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-4 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.4+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.4+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.13-2 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.32-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.31-2 install ok installed libtsan2:amd64 libtsan2 14-20240201-3 install ok installed libtype-tiny-perl libtype-tiny-perl 2.004000-1 install ok installed libtype-tiny-xs-perl:amd64 libtype-tiny-xs-perl 0.025-1+b1 install ok installed libubsan1:amd64 libubsan1 14-20240201-3 install ok installed libucx0:amd64 libucx0 1.15.0-1 install ok installed libudev1:amd64 libudev1 255.3-1 install ok installed libunicode-map-perl libunicode-map-perl 0.112-13+b2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed liburi-perl liburi-perl 5.25-1 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libvariable-magic-perl libvariable-magic-perl 0.63-1+b2 install ok installed libvulkan1:amd64 libvulkan1 1.3.275.0-1 install ok installed libwayland-client0:amd64 libwayland-client0 1.22.0-2.1 install ok installed libwebp7:amd64 libwebp7 1.3.2-0.3 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.3.2-0.3 install ok installed libwebpmux3:amd64 libwebpmux3 1.3.2-0.3 install ok installed libwww-perl libwww-perl 6.73-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.7-1 install ok installed libx265-199:amd64 libx265-199 3.5-2+b1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.14-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.15-1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.15-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.15-1 install ok installed libxcb-present0:amd64 libxcb-present0 1.15-1 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.15-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.15-1 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.5-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.1-1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.6-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2 install ok installed libxft2:amd64 libxft2 2.3.6-1 install ok installed libxi6:amd64 libxi6 2:1.8-1+b1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3 install ok installed libxkbfile1:amd64 libxkbfile1 1:1.1.0-1 install ok installed libxml-dom-perl libxml-dom-perl 1.46-2 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-4 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-7 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0207+dfsg+really+2.0134-1+b2 install ok installed libxml-libxslt-perl:amd64 libxml-libxslt-perl 2.002001-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.12-2 install ok installed libxml-parser-perl libxml-parser-perl 2.47-1+b1 install ok installed libxml-perl libxml-perl 0.08-4 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1.1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.09-3 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.51-2 install ok installed libxml-sax-perl libxml-sax-perl 1.02+dfsg-3 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.57-2 install ok installed libxml-simple-perl libxml-simple-perl 2.25-2 install ok installed libxml-twig-perl libxml-twig-perl 1:3.52-2 install ok installed libxml-writer-perl libxml-writer-perl 0.900-2 install ok installed libxml-xpath-perl libxml-xpath-perl 1.48-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-2 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b2 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-5 install ok installed libxmu6:amd64 libxmu6 2:1.1.3-3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.3-3 install ok installed libxnvctrl0:amd64 libxnvctrl0 525.125.06-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.17-1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.2-2+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxstring-perl:amd64 libxstring-perl 0.005-2+b2 install ok installed libxt6:amd64 libxt6 1:1.2.1-1.1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1.1 install ok installed libxv1:amd64 libxv1 2:1.0.11-1.1 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.5-1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.86+ds-1+b1 install ok installed libyaml-perl libyaml-perl 1.31-1 install ok installed libyuv0:amd64 libyuv0 0.0~git202401110.af6ac82-1 install ok installed libz3-4:amd64 libz3-4 4.8.12-3.1+b2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed linux-libc-dev linux-libc-dev 6.6.13-1 install ok installed login login 1:4.13+dfsg1-3+b1 install ok installed logsave logsave 1.47.0-2+b1 install ok installed luit luit 2.0.20221028-1 install ok installed lynx lynx 2.9.0rel.0-2 install ok installed lynx-common lynx-common 2.9.0rel.0-2 install ok installed mafft mafft 7.505-1 install ok installed mailcap mailcap 3.70+nmu1 install ok installed manpages manpages 6.05.01-1 install ok installed manpages-dev manpages-dev 6.05.01-1 install ok installed maq maq 0.7.1-9 install ok installed mariadb-common mariadb-common 1:10.11.6-2 install ok installed mash mash 2.3+dfsg-6 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed med-config med-config 3.8.1 install ok installed media-types media-types 10.1.0 install ok installed menu menu 2.1.50 install ok installed mesa-vulkan-drivers:amd64 mesa-vulkan-drivers 23.3.4-1 install ok installed mount mount 2.39.3-6 install ok installed mummer mummer 3.23+dfsg-8 install ok installed muscle muscle 1:5.1.0-1 install ok installed mustang mustang 3.2.4-1 install ok installed mysql-common mysql-common 5.8+1.1.0 install ok installed ncbi-blast+ ncbi-blast+ 2.12.0+ds-4 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.12.0+ds-4 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-10 install ok installed ncbi-tools-bin ncbi-tools-bin 6.1.20170106+dfsg1-10 install ok installed ncoils ncoils 2002-9 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.2-1 install ok installed openjdk-17-jdk-headless:amd64 openjdk-17-jdk-headless 17.0.10+7-1 install ok installed openjdk-17-jre:amd64 openjdk-17-jre 17.0.10+7-1 install ok installed openjdk-17-jre-headless:amd64 openjdk-17-jre-headless 17.0.10+7-1 install ok installed openmpi-bin openmpi-bin 4.1.6-5 install ok installed openmpi-common openmpi-common 4.1.6-5 install ok installed openssh-client openssh-client 1:9.6p1-3 install ok installed openssl openssl 3.1.4-2 install ok installed pal2nal pal2nal 14.1-3 install ok installed paml paml 4.9j+dfsg-4 install ok installed parallel parallel 20231122+ds-1 install ok installed passwd passwd 1:4.13+dfsg1-3+b1 install ok installed perl perl 5.38.2-3 install ok installed perl-base perl-base 5.38.2-3 install ok installed perl-doc perl-doc 5.38.2-3 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-3 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 7+b1 install ok installed perl-tk perl-tk 1:804.036+dfsg1-2 install ok installed pftools pftools 3.2.12-1 install ok installed phylip phylip 1:3.697+dfsg-3 install ok installed phyml phyml 3:3.3.20220408-3 install ok installed plasmidid plasmidid 1.6.5+dfsg-2 install ok installed poa poa 2.0+20060928-8 install ok installed poppler-data poppler-data 0.4.12-1 install ok installed prank prank 0.0.170427+dfsg-3 install ok installed primer3 primer3 2.6.1-4 install ok installed probalign probalign 1.4-10 install ok installed probcons probcons 1.12-14 install ok installed procps procps 2:4.0.4-4 install ok installed proda proda 1.0-14 install ok installed prodigal prodigal 1:2.6.3-6 install ok installed prokka prokka 1.14.6+dfsg-6 install ok installed psmisc psmisc 23.6-2 install ok installed publicsuffix publicsuffix 20231001.0357-0.1 install ok installed python-babel-localedata python-babel-localedata 2.10.3-3 install ok installed python-biopython-doc python-biopython-doc 1.81+dfsg-3 install ok installed python-matplotlib-data python-matplotlib-data 3.6.3-1 install ok installed python-odf-doc python-odf-doc 1.4.2-2 install ok installed python-odf-tools python-odf-tools 1.4.2-2 install ok installed python-tables-data python-tables-data 3.7.0-10 install ok installed python3 python3 3.11.6-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-attr python3-attr 23.2.0-1 install ok installed python3-babel python3-babel 2.10.3-3 install ok installed python3-biopython python3-biopython 1.81+dfsg-3 install ok installed python3-bottleneck python3-bottleneck 1.3.5+ds1-3+b1 install ok installed python3-brotli python3-brotli 1.1.0-2+b3 install ok installed python3-bs4 python3-bs4 4.12.3-1 install ok installed python3-cairo python3-cairo 1.25.1-2 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-contourpy python3-contourpy 1.0.7-1+b2 install ok installed python3-cssselect python3-cssselect 1.2.0-2 install ok installed python3-cycler python3-cycler 0.11.0-1 install ok installed python3-dateutil python3-dateutil 2.8.2-3 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-defusedxml python3-defusedxml 0.7.1-2 install ok installed python3-et-xmlfile python3-et-xmlfile 1.0.1-2.1 install ok installed python3-fonttools python3-fonttools 4.46.0-1 install ok installed python3-freetype python3-freetype 2.4.0-1 install ok installed python3-fs python3-fs 2.4.16-3 install ok installed python3-html5lib python3-html5lib 1.1-3 install ok installed python3-iniconfig python3-iniconfig 1.1.1-2 install ok installed python3-jinja2 python3-jinja2 3.1.2-1 install ok installed python3-joblib python3-joblib 1.3.2-1 install ok installed python3-kiwisolver python3-kiwisolver 1.4.4-1+b2 install ok installed python3-lxml:amd64 python3-lxml 5.1.0-1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b3 install ok installed python3-markupsafe python3-markupsafe 2.1.3-1+b1 install ok installed python3-matplotlib python3-matplotlib 3.6.3-1+b2 install ok installed python3-minimal python3-minimal 3.11.6-1 install ok installed python3-mpmath python3-mpmath 1.2.1-2 install ok installed python3-numexpr python3-numexpr 2.9.0-1 install ok installed python3-numpy python3-numpy 1:1.24.2-2 install ok installed python3-odf python3-odf 1.4.2-2 install ok installed python3-olefile python3-olefile 0.46-3 install ok installed python3-openpyxl python3-openpyxl 3.1.2+dfsg-5 install ok installed python3-packaging python3-packaging 23.2-1 install ok installed python3-pandas python3-pandas 1.5.3+dfsg-12 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.5.3+dfsg-12 install ok installed python3-pil:amd64 python3-pil 10.2.0-1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 10.2.0-1 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-pluggy python3-pluggy 1.3.0-1 install ok installed python3-psutil python3-psutil 5.9.8-1 install ok installed python3-pygments python3-pygments 2.15.1+dfsg-1 install ok installed python3-pyparsing python3-pyparsing 3.1.1-1 install ok installed python3-pytest python3-pytest 7.4.4-1 install ok installed python3-reportlab python3-reportlab 4.0.9-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-scipy python3-scipy 1.10.1-10 install ok installed python3-simplejson python3-simplejson 3.19.2-1+b1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-soupsieve python3-soupsieve 2.5-1 install ok installed python3-sympy python3-sympy 1.12-7 install ok installed python3-tables python3-tables 3.7.0-10 install ok installed python3-tables-lib python3-tables-lib 3.7.0-10+b1 install ok installed python3-tk:amd64 python3-tk 3.11.5-1 install ok installed python3-tz python3-tz 2023.4-1 install ok installed python3-ufolib2 python3-ufolib2 0.16.0+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b1 install ok installed python3-webencodings python3-webencodings 0.5.1-5 install ok installed python3-yaml python3-yaml 6.0.1-2 install ok installed python3.11 python3.11 3.11.7-2 install ok installed python3.11-minimal python3.11-minimal 3.11.7-2 install ok installed python3.12 python3.12 3.12.1-2 install ok installed python3.12-minimal python3.12-minimal 3.12.1-2 install ok installed rake rake 13.0.6-3 install ok installed raxml raxml 8.2.13+dfsg-1 install ok installed readline-common readline-common 8.2-3 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed ruby ruby 1:3.1 install ok installed ruby-net-telnet ruby-net-telnet 0.2.0-1 install ok installed ruby-rubygems ruby-rubygems 3.4.20-1 install ok installed ruby-sdbm:amd64 ruby-sdbm 1.0.0-5+b2 install ok installed ruby-webrick ruby-webrick 1.8.1-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.2-2 install ok installed ruby3.1 ruby3.1 3.1.2-8 install ok installed rubygems-integration rubygems-integration 1.18 install ok installed samtools samtools 1.19-1 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.20 install ok installed sgml-base sgml-base 1.31 install ok installed shared-mime-info shared-mime-info 2.4-1 install ok installed sim4 sim4 0.0.20121010-8 install ok installed spades spades 3.15.5+dfsg-7 install ok installed sysstat sysstat 12.7.5-2 install ok installed systemd systemd 255.3-1 install ok installed systemd-dev systemd-dev 255.3-1 install ok installed systemd-sysv systemd-sysv 255.3-1 install ok installed systemd-timesyncd systemd-timesyncd 255.3-1 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed t-coffee t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tigr-glimmer tigr-glimmer 3.02b-6+b1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-7 install ok installed tm-align tm-align 20190822+dfsg-2 install ok installed trimmomatic trimmomatic 0.39+dfsg-2 install ok installed tzdata tzdata 2023d-1 install ok installed ucf ucf 3.0043+nmu1 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed unzip unzip 6.0-28 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed wise wise 2.4.1-23 install ok installed wise-data wise-data 2.4.1-23 install ok installed x11-common x11-common 1:7.7+23 install ok installed x11-utils x11-utils 7.7+6 install ok installed xauth xauth 1:1.1.2-1 install ok installed xdg-user-dirs xdg-user-dirs 0.18-1 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.19 install ok installed xz-utils xz-utils 5.4.5-0.3 install ok installed zip zip 3.0-13 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 5m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 5m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-get', 'remove', 'adduser', 'adwaita-icon-theme', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2-bin', 'aragorn', 'at-spi2-common', 'at-spi2-core', 'bamtools', 'bedtools', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blends-common', 'blt', 'bowtie', 'bowtie2', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'cd-hit', 'circos', 'circos-tools', 'clustalo', 'clustalw', 'cpp', 'cpp-13', 'cpp-13-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jdk-headless', 'default-jre', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dmsetup', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-liberation-sans-narrow', 'fonts-liberation2', 'fonts-lyx', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'g++-', 'g++-13', 'g++-13-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gawk', 'gcc', 'gcc-13', 'gcc-13-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'ghostscript', 'graphviz', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'isympy-common', 'isympy3', 'java-common', 'javascript-common', 'kalign', 'krb5-locales', 'lagan', 'less', 'libabsl20220623:amd64', 'libace-perl', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-munkres-perl', 'libann0', 'libaom3:amd64', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargon2-1:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasan8:amd64', 'libasound2:amd64', 'libasound2-data', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl:amd64', 'libbamtools2.5.2:amd64', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-searchio-hmmer-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcapnp-1.0.1:amd64', 'libcapture-tiny-perl', 'libcarp-always-perl', 'libcarp-clan-perl', 'libcbor0.10:amd64', 'libcc1-0:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl:amd64', 'libconfig-general-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-dev:amd64', 'libcrypt-rc4-perl', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-dumper-simple-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl:amd64', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdevmapper1.02.1:amd64', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libencode-perl:amd64', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfdisk1:amd64', 'libfido2-1:amd64', 'libfile-basedir-perl', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfont-ttf-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgail-common:amd64', 'libgail18:amd64', 'libgav1-1:amd64', 'libgcc-13-dev:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgetopt-simple-perl', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraph-perl', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs-common', 'libgs10:amd64', 'libgs10-common', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-bin', 'libgtk2.0-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libheap-perl', 'libheif-plugin-aomenc:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif-plugin-x265:amd64', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn12:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-all-perl', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjson-c5:amd64', 'libjsoncpp25:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmod2:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'liblist-allutils-perl', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblist-someutils-perl', 'liblist-someutils-xs-perl:amd64', 'liblist-utilsby-perl', 'libllvm17:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-bezier-perl', 'libmath-derivative-perl', 'libmath-round-perl', 'libmath-spline-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmunge2:amd64', 'libmurmurhash2:amd64', 'libnamespace-clean-perl', 'libncbi6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnlopt0:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libnumber-format-perl', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl:amd64', 'libparams-validate-perl:amd64', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.38:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpod-coverage-perl', 'libpod-parser-perl', 'libpostscript-perl', 'libpq5:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-common-perl', 'librole-tiny-perl', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libruby:amd64', 'libruby3.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libset-intspan-perl', 'libset-object-perl', 'libset-scalar-perl', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstatistics-basic-perl', 'libstatistics-descriptive-perl', 'libstdc++-13-dev:amd64', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl:amd64', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libsvtav1enc1d1:amd64', 'libswiss-perl', 'libsystemd-shared:amd64', 'libsz2:amd64', 'libtask-weaken-perl', 'libtcl8.6:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-pod-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl:amd64', 'libtext-diff-perl', 'libtext-format-perl', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan2:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl:amd64', 'libubsan1:amd64', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libx265-199:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbfile1:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl:amd64', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxstring-perl:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyuv0:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'luit', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'mash', 'med-config', 'media-types', 'menu', 'mesa-vulkan-drivers:amd64', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-tools-bin', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jdk-headless:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'parallel', 'perl', 'perl-doc', 'perl-modules-5.38', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'prodigal', 'prokka', 'psmisc', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-chardet', 'python3-contourpy', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-html5lib', 'python3-iniconfig', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-psutil', 'python3-pygments', 'python3-pyparsing', 'python3-pytest', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3-simplejson', 'python3-six', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-webencodings', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'rake', 'raxml', 'readline-common', 'rpcsvc-proto', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'sim4', 'spades', 'sysstat', 'systemd', 'systemd-dev', 'systemd-sysv', 'systemd-timesyncd', 't-coffee', 'tigr-glimmer', 'tk8.6-blt2.5', 'tm-align', 'trimmomatic', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'plasmidid'] 6m43.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser adwaita-icon-theme alsa-topology-conf alsa-ucm-conf amap-align apache2-bin aragorn at-spi2-common at-spi2-core bamtools bedtools binutils binutils-common binutils-x86-64-linux-gnu bioperl bioperl-run blends-common blt bowtie bowtie2 bwa bzip2 ca-certificates ca-certificates-java cd-hit circos circos-tools clustalo clustalw cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jdk-headless default-jre default-jre-headless dialign dialign-tx dialign-tx-data dmsetup emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-circos-symbols fonts-cmu fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-droid-fallback fonts-lato fonts-liberation fonts-liberation-sans-narrow fonts-liberation2 fonts-lyx fonts-noto-mono fonts-urw-base35 fsa g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gawk gcc gcc-13 gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu ghostscript graphviz gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme hmmer hyphy-common hyphy-pt ibverbs-providers infernal isympy-common isympy3 java-common javascript-common kalign krb5-locales lagan less libabsl20220623 libace-perl libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libaom3 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargon2-1 libargtable2-0 libarray-compare-perl libasan8 libasound2 libasound2-data libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatomic1 libatspi2.0-0 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbamtools2.5.2 libbinutils libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-eutilities-perl libbio-featureio-perl libbio-perl-perl libbio-perl-run-perl libbio-searchio-hmmer-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libblas3 libblosc1 libbrotli1 libbsd-resource-perl libbsd0 libc-dev-bin libc-devtools libc6-dev libcache-cache-perl libcairo-gobject2 libcairo2 libcapnp-1.0.1 libcapture-tiny-perl libcarp-always-perl libcarp-clan-perl libcbor0.10 libcc1-0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-general-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-dev libcrypt-rc4-perl libcryptsetup12 libctf-nobfd0 libctf0 libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-dumper-simple-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdav1d7 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdconf1 libde265-0 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdevmapper1.02.1 libdigest-perl-md5-perl libdivsufsort3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdynaloader-functions-perl libedit2 libelf1 libencode-locale-perl libencode-perl liberror-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfdisk1 libfido2-1 libfile-basedir-perl libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfont-ttf-perl libfontconfig1 libfontenc1 libfreetype6 libfreezethaw-perl libfribidi0 libgail-common libgail18 libgav1-1 libgcc-13-dev libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgetopt-simple-perl libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgprofng0 libgraph-perl libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgraphviz-perl libgs-common libgs10 libgs10-common libgsl27 libgslcblas0 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1 libheap-perl libheif-plugin-aomenc libheif-plugin-dav1d libheif-plugin-libde265 libheif-plugin-x265 libheif1 libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu72 libidn12 libijs-0.35 libimagequant0 libimport-into-perl libio-all-perl libio-compress-brotli-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjbig2dec0 libjbzip2-java libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-jquery-ui libjson-c5 libjsoncpp25 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 liblist-allutils-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-someutils-xs-perl liblist-utilsby-perl libllvm17 liblmdb0 liblsan0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzo2-2 libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-bezier-perl libmath-derivative-perl libmath-round-perl libmath-spline-perl libmath-vec-perl libmath-vecstat-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpc3 libmpfr6 libmunge2 libmurmurhash2 libnamespace-clean-perl libncbi6 libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnlopt0 libnsl-dev libnsl2 libnspr4 libnss-systemd libnss3 libnuma1 libnumber-format-perl libole-storage-lite-perl libopenjp2-7 libopenmpi3 libpackage-stash-perl libpackage-stash-xs-perl libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-validate-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl5.38 libpixman-1-0 libpmix2 libpng16-16 libpod-coverage-perl libpod-parser-perl libpostscript-perl libpq5 libproc2-0 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl libregexp-common-perl librole-tiny-perl librsvg2-2 librsvg2-common librtmp1 libruby libruby3.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libset-intspan-perl libset-object-perl libset-scalar-perl libsframe1 libsharpyuv0 libsigsegv2 libsm6 libsnappy1v5 libsoap-lite-perl libsort-naturally-perl libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssw0 libstatistics-basic-perl libstatistics-descriptive-perl libstdc++-13-dev libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libsvtav1enc1d1 libswiss-perl libsystemd-shared libsz2 libtask-weaken-perl libtcl8.6 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-pod-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-format-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtree-dagnode-perl libtry-tiny-perl libtsan2 libtype-tiny-perl libtype-tiny-xs-perl libubsan1 libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libvulkan1 libwayland-client0 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libx265-199 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbfile1 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxstring-perl libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyuv0 libz3-4 linux-libc-dev luit lynx lynx-common mafft mailcap manpages manpages-dev maq mariadb-common mash med-config media-types menu mesa-vulkan-drivers mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncbi-tools-bin ncoils netbase ocl-icd-libopencl1 openjdk-17-jdk-headless openjdk-17-jre openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml parallel perl perl-doc perl-modules-5.38 perl-openssl-defaults perl-tk pftools phylip phyml plasmidid poa poppler-data prank primer3 probalign probcons procps proda prodigal prokka psmisc publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-appdirs python3-attr python3-babel python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-cairo python3-chardet python3-contourpy python3-cssselect python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-et-xmlfile python3-fonttools python3-freetype python3-fs python3-html5lib python3-iniconfig python3-jinja2 python3-joblib python3-kiwisolver python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-mpmath python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-psutil python3-pygments python3-pyparsing python3-pytest python3-reportlab python3-rlpycairo python3-scipy python3-simplejson python3-six python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-webencodings python3-yaml python3.11 python3.11-minimal python3.12 python3.12-minimal rake raxml readline-common rpcsvc-proto ruby ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration samtools sensible-utils sgml-base shared-mime-info sim4 spades sysstat systemd systemd-dev systemd-sysv systemd-timesyncd t-coffee tigr-glimmer tk8.6-blt2.5 tm-align trimmomatic ucf unicode-data unzip w3c-sgml-lib wise wise-data x11-common x11-utils xauth xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zip 0 upgraded, 0 newly installed, 766 to remove and 0 not upgraded. After this operation, 3030 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 60731 files and directories currently installed.) Removing phyml (3:3.3.20220408-3) ... Removing openmpi-bin (4.1.6-5) ... Removing libopenmpi3:amd64 (4.1.6-5) ... Removing libucx0:amd64 (1.15.0-1) ... Removing libfabric1:amd64 (1.17.0-3) ... Removing librdmacm1:amd64 (48.0-1.1) ... Removing openssh-client (1:9.6p1-3) ... Removing trimmomatic (0.39+dfsg-2) ... Removing plasmidid (1.6.5+dfsg-2) ... Removing prokka (1.14.6+dfsg-6) ... Removing default-jre (2:1.17-75) ... Removing openjdk-17-jre:amd64 (17.0.10+7-1) ... Removing libgail-common:amd64 (2.24.33-3) ... Removing libgail18:amd64 (2.24.33-3) ... Removing alsa-topology-conf (1.2.5.1-2) ... Removing alsa-ucm-conf (1.2.10-1) ... Removing amap-align (2.2+git20080214.600fc29+dfsg-2) ... Removing libapache2-reload-perl (0.14-1) ... Removing libapache-dbi-perl (1.12-3) ... Removing libapache2-mod-perl2 (2.0.13-1+b1) ... Removing apache2-bin (2.4.58-1+b1) ... Removing aragorn (1.2.41-2) ... Removing at-spi2-core (2.50.0-1+b1) ... Removing libatk-wrapper-java-jni:amd64 (0.40.0-3) ... Removing spades (3.15.5+dfsg-7) ... Removing bamtools (2.5.2+dfsg-5) ... Removing bedtools (2.31.1+dfsg-2) ... Removing g++ (4:13.2.0-7) ... Removing gcc (4:13.2.0-7) ... Removing g++-x86-64-linux-gnu (4:13.2.0-7) ... Removing gcc-x86-64-linux-gnu (4:13.2.0-7) ... Removing g++-13 (13.2.0-13) ... Removing g++-13-x86-64-linux-gnu (13.2.0-13) ... Removing bioperl-run (1.7.3-9) ... Removing bioperl (1.7.8-1) ... Removing med-config (3.8.1) ... Removing blends-common (0.7.6) ... Removing python3-biopython (1.81+dfsg-3) ... Removing python3-reportlab (4.0.9-1) ... Removing python3-matplotlib (3.6.3-1+b2) ... Removing python3-pil.imagetk:amd64 (10.2.0-1) ... Removing python3-pil:amd64 (10.2.0-1) ... Removing python3-tk:amd64 (3.11.5-1) ... Removing blt (2.5.3+dfsg-7) ... Removing bowtie (1.3.1-3) ... Removing bowtie2 (2.5.2-1) ... Removing bwa (0.7.17-7+b3) ... Removing bzip2 (1.0.8-5+b2) ... Removing default-jdk-headless (2:1.17-75) ... Removing openjdk-17-jdk-headless:amd64 (17.0.10+7-1) ... Removing cd-hit (4.8.1-4) ... Removing circos-tools (0.23-1) ... Removing circos (0.69.9+dfsg-2) ... Removing clustalo (1.2.4-8) ... Removing libbio-tools-run-alignment-clustalw-perl (1.7.4-3) ... Removing clustalw (2.1+lgpl-7) ... Removing cpp (4:13.2.0-7) ... Removing cpp-13 (13.2.0-13) ... Removing cpp-x86-64-linux-gnu (4:13.2.0-7) ... Removing gsettings-desktop-schemas (45.0-2) ... Removing dconf-gsettings-backend:amd64 (0.40.0-4+b1) ... Removing dconf-service (0.40.0-4+b1) ... Removing dbus-user-session (1.14.10-4) ... Removing libpam-systemd:amd64 (255.3-1) ... dpkg: warning: while removing libpam-systemd:amd64, directory '/usr/lib/x86_64-linux-gnu/security' not empty so not removed Removing dbus (1.14.10-4) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing dbus-daemon (1.14.10-4) ... Removing dbus-bin (1.14.10-4) ... Removing dbus-session-bus-common (1.14.10-4) ... Removing dbus-system-bus-common (1.14.10-4) ... Removing default-jre-headless (2:1.17-75) ... Removing dialign (2.2.1-11) ... Removing dialign-tx (1.0.2-14+b1) ... Removing dialign-tx-data (1.0.2-14) ... Removing systemd-timesyncd (255.3-1) ... Removing systemd-sysv (255.3-1) ... Removing emboss (6.6.0+dfsg-12) ... Removing emboss-data (6.6.0+dfsg-12) ... Removing emboss-lib (6.6.0+dfsg-12) ... Removing fsa (1.15.9+dfsg-6) ... Removing exonerate (2.4.0-5) ... Removing file (1:5.45-2+b1) ... Removing librsvg2-common:amd64 (2.54.7+dfsg-2) ... Removing librsvg2-2:amd64 (2.54.7+dfsg-2) ... Removing libgraphviz-perl (2.24-1) ... Removing graphviz (2.42.2-8) ... Removing libgvc6 (2.42.2-8) ... Removing libatk-wrapper-java (0.40.0-3) ... Removing x11-utils (7.7+6) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-7) ... Removing libtk8.6:amd64 (8.6.13-2) ... Removing perl-tk (1:804.036+dfsg1-2) ... Removing fonts-circos-symbols (0.69.9+dfsg-2) ... Removing fonts-cmu (0.7.0-5) ... Removing python-matplotlib-data (3.6.3-1) ... Removing fonts-dejavu-extra (2.37-8) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing fonts-droid-fallback (1:6.0.1r16-1.1) ... Removing fonts-lato (2.015-1) ... Removing fonts-liberation2 (1:2.1.5-3) ... Removing fonts-liberation (1:2.1.5-3) ... Removing fonts-liberation-sans-narrow (1:1.07.6-4) ... Removing fonts-lyx (2.4.0~RC1-2) ... Removing fonts-noto-mono (20201225-2) ... Removing ghostscript (10.02.1~dfsg-3) ... Removing libgs10:amd64 (10.02.1~dfsg-3) ... Removing libgs10-common (10.02.1~dfsg-3) ... Removing mummer (3.23+dfsg-8) ... Removing gawk (1:5.2.1-2) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing libgtk2.0-bin (2.24.33-3) ... Removing hmmer (3.4+dfsg-2) ... Removing hyphy-pt (2.5.59+dfsg-1) ... Removing hyphy-common (2.5.59+dfsg-1) ... Removing ibverbs-providers:amd64 (48.0-1.1) ... Removing infernal (1.1.5-2) ... Removing isympy3 (1.12-7) ... Removing isympy-common (1.12-7) ... Removing javascript-common (11+nmu1) ... Removing kalign (1:3.3.5-1) ... Removing krb5-locales (1.20.1-5) ... Removing lagan (2.0-9) ... Removing less (590-2) ... Removing libgd-perl (2.78-1+b1) ... Removing libc-devtools (2.37-15~deb13u1) ... Removing libgd3:amd64 (2.3.3-9+b1) ... Removing libavif16:amd64 (1.0.3-1) ... Removing libgav1-1:amd64 (0.18.0-1+b1) ... Removing libabsl20220623:amd64 (20220623.1-3) ... Removing libace-perl (1.92-11+b3) ... Removing python3-tables (3.7.0-10) ... Removing python3-tables-lib (3.7.0-10+b1) ... Removing libhdf5-103-1:amd64 (1.10.10+repack-3) ... Removing libsz2:amd64 (1.1.2-1) ... Removing libaec0:amd64 (1.1.2-1) ... Removing libtest-most-perl (0.38-1) ... Removing libtest-differences-perl (0.71-1) ... Removing libtext-diff-perl (1.45-2) ... Removing libalgorithm-diff-xs-perl:amd64 (0.04-8+b2) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libalgorithm-munkres-perl (0.08-5) ... Removing libann0 (1.1.2+doc-9+b1) ... Removing libheif-plugin-aomenc:amd64 (1.17.6-1) ... Removing libaom3:amd64 (3.8.1-1) ... Removing libaprutil1-ldap:amd64 (1.6.3-1+b1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.6.3-1+b1) ... Removing libaprutil1:amd64 (1.6.3-1+b1) ... Removing libapr1:amd64 (1.7.2-3+b2) ... Removing libargtable2-0 (13-1.1) ... Removing libarray-compare-perl (3.0.8-1) ... Removing libstdc++-13-dev:amd64 (13.2.0-13) ... Removing libatk-bridge2.0-0:amd64 (2.50.0-1+b1) ... Removing libatspi2.0-0:amd64 (2.50.0-1+b1) ... Removing libauthen-sasl-perl (2.1700-1) ... Removing libnamespace-clean-perl (0.27-2) ... Removing libb-hooks-endofscope-perl (0.26-1) ... Removing libparams-validate-perl:amd64 (1.31-2+b1) ... Removing libpackage-stash-perl (0.40-1) ... Removing libmoo-perl (2.005005-1) ... Removing libimport-into-perl (1.002005-2) ... Removing libbamtools2.5.2:amd64 (2.5.2+dfsg-5) ... Removing libbio-eutilities-perl (1.77-2) ... Removing libbio-asn1-entrezgene-perl (1.730-2) ... Removing libbio-cluster-perl (1.7.3-6) ... Removing libbio-featureio-perl (1.6.905-2) ... Removing libbio-variation-perl (1.7.5-3) ... Removing libbio-tools-run-remoteblast-perl (1.7.3-3) ... Removing libbio-perl-run-perl (1.7.3-9) ... Removing libbio-searchio-hmmer-perl (1.7.3-2) ... Removing libdate-calc-xs-perl:amd64 (6.4-2+b2) ... Removing libdate-calc-perl (6.4-2) ... Removing libbit-vector-perl:amd64 (7.4-2+b2) ... Removing python3-pandas (1.5.3+dfsg-12) ... Removing python3-pandas-lib:amd64 (1.5.3+dfsg-12) ... Removing python3-numexpr (2.9.0-1) ... Removing python3-bottleneck (1.3.5+ds1-3+b1) ... Removing libblosc1:amd64 (1.21.5+ds-1+b1) ... Removing lynx (2.9.0rel.0-2) ... Removing libio-compress-brotli-perl (0.004001-2+b1) ... Removing libbsd-resource-perl (1.2911-2+b2) ... Removing mesa-vulkan-drivers:amd64 (23.3.4-1) ... Removing libgl1:amd64 (1.7.0-1) ... Removing libglx0:amd64 (1.7.0-1) ... Removing libglx-mesa0:amd64 (23.3.4-1) ... Removing libxaw7:amd64 (2:1.0.14-1) ... Removing libxmu6:amd64 (2:1.1.3-3) ... Removing libxt6:amd64 (1:1.2.1-1.1) ... Removing libc6-dev:amd64 (2.37-15~deb13u1) ... Removing libc-dev-bin (2.37-15~deb13u1) ... Removing libcache-cache-perl (1.08-3) ... Removing libcairo-gobject2:amd64 (1.18.0-1+b1) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo (1.25.1-2) ... Removing mash (2.3+dfsg-6) ... Removing libcapnp-1.0.1:amd64 (1.0.1-3+b1) ... Removing libcapture-tiny-perl (0.48-2) ... Removing libcarp-always-perl (0.16-1) ... Removing libcarp-clan-perl (6.08-2) ... Removing libfido2-1:amd64 (1.14.0-1) ... Removing libcbor0.10:amd64 (0.10.2-1.1) ... Removing libgvpr2:amd64 (2.42.2-8) ... Removing libcgraph6:amd64 (2.42.2-8) ... Removing libcdt5:amd64 (2.42.2-8) ... Removing libcgi-fast-perl (1:2.17-1) ... Removing libcgi-pm-perl (4.61-1) ... Removing libexception-class-perl (1.45-1) ... Removing libclass-data-inheritable-perl (0.08-3) ... Removing libxmlrpc-lite-perl (0.717-5) ... Removing libsoap-lite-perl (1.27-3) ... Removing libclass-inspector-perl (1.36-3) ... Removing librole-tiny-perl (2.002004-1) ... Removing libclass-method-modifiers-perl (2.15-1) ... Removing libclass-xsaccessor-perl (1.19-4+b2) ... Removing libxml-xpath-perl (1.48-1) ... Removing libxml-twig-perl (1:3.52-2) ... Removing libxml-dom-xpath-perl (0.14-4) ... Removing libxml-dom-perl (1.46-2) ... Removing libconfig-general-perl (2.65-2) ... Removing libconvert-binary-c-perl (0.84-1+b3) ... Removing libmime-tools-perl (5.512-1) ... Removing libconvert-binhex-perl (1.125-3) ... Removing libcrypt-dev:amd64 (1:4.4.36-4) ... Removing libspreadsheet-parseexcel-perl (0.6600-1) ... Removing libcrypt-rc4-perl (2.02-5) ... Removing samtools (1.19-1) ... Removing libhts3:amd64 (1.18+ds-1) ... Removing libcurl3-gnutls:amd64 (8.5.0-2) ... Removing libcurl4:amd64 (8.5.0-2) ... Removing libdata-dump-perl (1.25-1) ... Removing libdata-dumper-simple-perl (0.11-7) ... Removing libdate-manip-perl (6.94-1) ... Removing libheif-plugin-x265:amd64 (1.17.6-1) ... Removing libdbd-mysql-perl:amd64 (4.052-1+b1) ... Removing libdbd-pg-perl (3.18.0-1+b1) ... Removing libdbd-sqlite3-perl:amd64 (1.74-1+b1) ... Removing libdbi-perl:amd64 (1.643-4+b1) ... Removing libdconf1:amd64 (0.40.0-4+b1) ... Removing libgdk-pixbuf2.0-bin (2.42.10+dfsg-3) ... Removing libdevel-stacktrace-perl (2.0500-1) ... Removing libpod-coverage-perl (0.23-2) ... Removing libdevel-symdump-perl (2.18-5) ... Removing libdigest-perl-md5-perl (1.9-5) ... Removing libdivsufsort3:amd64 (2.0.1-5) ... Removing libgl1-mesa-dri:amd64 (23.3.4-1) ... Removing libdrm-amdgpu1:amd64 (2.4.120-1) ... Removing libdrm-radeon1:amd64 (2.4.120-1) ... Removing libdrm-nouveau2:amd64 (2.4.120-1) ... Removing libdrm-intel1:amd64 (2.4.120-1) ... Removing libllvm17:amd64 (1:17.0.6-5) ... Removing libelf1:amd64 (0.190-1+b1) ... Removing libtext-csv-xs-perl:amd64 (1.53-1+b1) ... Removing libencode-perl:amd64 (3.20-1+b1) ... Removing liberror-perl (0.17029-2) ... Removing libpmix2:amd64 (5.0.1-4) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Removing python3-simplejson (3.19.2-1+b1) ... Removing libtype-tiny-perl (2.004000-1) ... Removing libsvg-graph-perl (0.02-4) ... Removing libstatistics-descriptive-perl (3.0801-1) ... Removing liblist-moreutils-perl (0.430-2) ... Removing libexporter-tiny-perl (1.006002-1) ... Removing libfcgi-bin (2.4.2-2) ... Removing libfcgi-perl (0.82+ds-2+b1) ... Removing libfcgi0ldbl:amd64 (2.4.2-2) ... Removing libfile-basedir-perl (0.09-2) ... Removing pftools (3.2.12-1) ... Removing libfile-slurp-perl (9999.32-2) ... Removing libtree-dagnode-perl (1.32-1) ... Removing libfile-slurp-tiny-perl (0.004-2) ... Removing libfile-sort-perl (1.01-3) ... Removing libhtml-format-perl (2.16-2) ... Removing libfont-afm-perl (1.20-4) ... Removing libfont-ttf-perl (1.06-2) ... Removing libraqm0:amd64 (0.10.1-1) ... Removing libfreezethaw-perl (0.5001-3) ... Removing libswiss-perl (1.80-1) ... Removing libhttp-daemon-perl (6.16-1) ... Removing libtest-deep-perl (1.204-1) ... Removing libmailtools-perl (2.21-2) ... Removing libgraphics-colorobject-perl (0.5.0-10.1) ... Removing libgraphics-colornames-perl (3.5.0-3) ... Removing perl-doc (5.38.2-3) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing parallel (20231122+ds-1) ... Removing 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Removing 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Removing libgetopt-simple-perl (1.52-7) ... Removing tm-align (20190822+dfsg-2) ... Removing libgif7:amd64 (5.2.1-2.5) ... Removing libglapi-mesa:amd64 (23.3.4-1) ... Removing wise (2.4.1-23) ... Removing libglib2.0-data (2.78.3-2) ... Removing libglvnd0:amd64 (1.7.0-1) ... Removing ncbi-blast+-legacy (2.12.0+ds-4) ... Removing ncbi-blast+ (2.12.0+ds-4) ... Removing muscle (1:5.1.0-1) ... Removing libgpm2:amd64 (1.20.7-10+b2) ... Removing libgraph-perl (1:0.9727-1) ... Removing libgs-common (10.02.1~dfsg-3) ... Removing libgsl27:amd64 (2.7.1+dfsg-6) ... Removing libgslcblas0:amd64 (2.7.1+dfsg-6) ... Removing libpq5:amd64 (16.1-1+b1) ... Removing libgts-bin (0.7.6+darcs121130-5+b1) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-5+b1) ... Removing libheap-perl (0.80-5) ... Removing libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b1) ... Removing libhtml-form-perl (6.11-1) ... Removing libhtml-tableextract-perl (2.15-2) ... Removing libhtscodecs2:amd64 (1.6.0-1) ... Removing libhwloc-plugins:amd64 (2.10.0-1) ... Removing libhwloc15:amd64 (2.10.0-1) ... Removing python3-openpyxl (3.1.2+dfsg-5) ... Removing libidn12:amd64 (1.42-1) ... Removing libijs-0.35:amd64 (0.35-15.1) ... Removing libimagequant0:amd64 (2.18.0-1) ... Removing libio-all-perl (0.87-2) ... Removing libipc-run-perl (20231003.0-1) ... Removing libio-pty-perl (1:1.20-1) ... Removing libio-sessiondata-perl (1.03-3) ... Removing libnet-smtp-ssl-perl (1.04-2) ... Removing libole-storage-lite-perl (0.22-1) ... Removing libio-stringy-perl (2.111-3) ... Removing libipc-sharelite-perl (0.17-5+b1) ... Removing libipc-system-simple-perl (1.30-2) ... Removing libjbig2dec0:amd64 (0.20-1) ... Removing libjbzip2-java (0.9.1-8) ... Removing libjcode-pm-perl (2.06-1.1) ... Removing libyuv0:amd64 (0.0~git202401110.af6ac82-1) ... Removing python-odf-doc (1.4.2-2) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjsoncpp25:amd64 (1.9.5-6+b2) ... Removing liblab-gamut1:amd64 (2.42.2-8) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Removing libldap-common (2.5.13+dfsg-5) ... Removing liblist-allutils-perl (0.19-1) ... Removing liblist-moreutils-xs-perl (0.430-3+b2) ... Removing liblist-someutils-xs-perl:amd64 (0.58-3+b1) ... Removing liblist-someutils-perl (0.59-1) ... Removing liblist-utilsby-perl (0.12-2) ... Removing liblmdb0:amd64 (0.9.31-1) ... Removing libltdl7:amd64 (2.4.7-7) ... Removing liblua5.3-0:amd64 (5.3.6-2) ... Removing liblzo2-2:amd64 (2.10-2) ... Removing libmagic1:amd64 (1:5.45-2+b1) ... Removing libmagic-mgc (1:5.45-2+b1) ... Removing libmariadb3:amd64 (1:10.11.6-2) ... Removing libmath-bezier-perl (0.01-4) ... Removing libmath-spline-perl (0.02-4) ... Removing libmath-derivative-perl (1.01-3) ... Removing libmath-round-perl (0.08-1) ... Removing libmath-vec-perl (1.01-5) ... Removing libmath-vecstat-perl (0.08-3) ... Removing libmbedtls14:amd64 (2.28.7-1) ... Removing libmbedx509-1:amd64 (2.28.7-1) ... Removing libmbedcrypto7:amd64 (2.28.7-1) ... Removing libmldbm-perl (2.05-4) ... Removing libmunge2:amd64 (0.5.15-3) ... Removing libmurmurhash2:amd64 (1.5-3) ... Removing ncbi-tools-bin (6.1.20170106+dfsg1-10) ... Removing libncbi6:amd64 (6.1.20170106+dfsg1-10) ... Removing libnghttp2-14:amd64 (1.59.0-1) ... Removing libnlopt0:amd64 (2.7.1-5+b2) ... Removing libnsl-dev:amd64 (1.3.0-3) ... Removing libnss-systemd:amd64 (255.3-1) ... Removing libx265-199:amd64 (3.5-2+b1) ... Removing libpsm2-2 (11.2.185-2) ... Removing libnuma1:amd64 (2.0.16-1) ... Removing libstatistics-basic-perl (1.6611-3) ... Removing libnumber-format-perl (1.76-1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b2) ... Removing libpackage-stash-xs-perl:amd64 (0.30-1+b2) ... Removing libpaper-utils (1.1.29) ... Removing libpaper1:amd64 (1.1.29) ... Removing libspreadsheet-writeexcel-perl (2.40-4) ... Removing libparse-recdescent-perl (1.967015+dfsg-4) ... Removing libpathplan4:amd64 (2.42.2-8) ... Removing libpciaccess0:amd64 (0.17-3) ... Removing libpod-parser-perl (1.67-1) ... Removing 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Removing 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Removing libpostscript-perl (0.06-3.1) ... Removing python3-joblib (1.3.2-1) ... Removing procps (2:4.0.4-4) ... Removing libproc2-0:amd64 (2:4.0.4-4) ... Removing libpsl5:amd64 (0.21.2-1+b1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libqhull-r8.0:amd64 (2020.2-6) ... Removing librav1e0:amd64 (0.6.6-7) ... Removing libreadonly-perl (2.050-3) ... Removing libref-util-perl (0.204-2) ... Removing libref-util-xs-perl (0.117-2+b2) ... Removing libregexp-common-perl (2017060201-3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Removing libsasl2-modules:amd64 (2.1.28+dfsg1-4+b1) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Removing sysstat (12.7.5-2) ... Removing libsensors5:amd64 (1:3.6.0-8) ... Removing libsensors-config (1:3.6.0-8) ... Removing libset-intspan-perl (1.19-3) ... Removing libset-object-perl (1.42-1+b3) ... Removing libset-scalar-perl (1.29-3) ... Removing libwebpmux3:amd64 (1.3.2-0.3) ... Removing libwebpdemux2:amd64 (1.3.2-0.3) ... Removing libsigsegv2:amd64 (2.14-1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libsnappy1v5:amd64 (1.1.10-1) ... Removing libsort-naturally-perl (1.03-4) ... Removing libspiffy-perl (0.46-1) ... Removing libssh2-1:amd64 (1.11.0-4) ... Removing libssw0:amd64 (1.1-14) ... Removing libsub-exporter-progressive-perl (0.001013-3) ... Removing libsub-identify-perl (0.14-3+b1) ... Removing libsub-name-perl:amd64 (0.27-1+b1) ... Removing libsub-quote-perl (2.006008-1) ... Removing libtest-warn-perl (0.37-2) ... Removing libtest-exception-perl (0.43-3) ... Removing libsub-uplevel-perl (0.2800-3) ... Removing libsvg-perl (2.87-1) ... Removing libsvtav1enc1d1:amd64 (1.7.0+dfsg-2) ... Removing libtask-weaken-perl (1.06-2) ... Removing libtcl8.6:amd64 (8.6.13+dfsg-2) ... Removing libtest-pod-perl (1.52-2) ... Removing libtest-requiresinternet-perl (0.05-4) ... Removing libtext-csv-perl (2.04-1) ... Removing libtext-format-perl (0.62-1) ... Removing libtext-iconv-perl:amd64 (1.7-8+b2) ... Removing libtie-ixhash-perl (1.23-4) ... Removing libtirpc-dev:amd64 (1.3.4+ds-1) ... Removing libtype-tiny-xs-perl:amd64 (0.025-1+b1) ... Removing libunicode-map-perl (0.112-13+b2) ... Removing libvariable-magic-perl (0.63-1+b2) ... Removing libvulkan1:amd64 (1.3.275.0-1) ... Removing libwayland-client0:amd64 (1.22.0-2.1) ... Removing xauth (1:1.1.2-1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libx11-xcb1:amd64 (2:1.8.7-1) ... Removing libxcb-dri2-0:amd64 (1.15-1) ... Removing libxcb-dri3-0:amd64 (1.15-1) ... Removing libxcb-glx0:amd64 (1.15-1) ... Removing libxcb-present0:amd64 (1.15-1) ... Removing libxcb-randr0:amd64 (1.15-1) ... Removing libxcb-shape0:amd64 (1.15-1) ... Removing libxcb-sync1:amd64 (1.15-1) ... Removing libxcb-xfixes0:amd64 (1.15-1) ... Removing libxxf86dga1:amd64 (2:1.1.5-1) ... Removing libxkbfile1:amd64 (1:1.1.0-1) ... Removing libxml-sax-writer-perl (0.57-2) ... Removing libxml-filter-buffertext-perl (1.01-7) ... Removing libxml-simple-perl (2.25-2) ... Removing libxml-libxslt-perl:amd64 (2.002001-1+b1) ... Removing libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.51-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.12-2) ... Removing libxml-perl (0.08-4) ... Removing libxml-regexp-perl (0.04-1.1) ... Removing libxml-sax-base-perl (1.09-3) ... Removing libxml-writer-perl (0.900-2) ... Removing libxml-xpathengine-perl (0.14-2) ... Removing libxmuu1:amd64 (2:1.1.3-3) ... Removing libxnvctrl0:amd64 (525.125.06-1) ... Removing libxpm4:amd64 (1:3.5.17-1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxstring-perl:amd64 (0.005-2+b2) ... Removing libxtst6:amd64 (2:1.2.3-1.1) ... Removing libxv1:amd64 (2:1.0.11-1.1) ... Removing libyaml-libyaml-perl (0.86+ds-1+b1) ... Removing python3-yaml (6.0.1-2) ... Removing libyaml-perl (1.31-1) ... Removing libz3-4:amd64 (4.8.12-3.1+b2) ... Removing linux-libc-dev (6.6.13-1) ... Removing luit (2.0.20221028-1) ... Removing 'diversion of /usr/bin/luit to /usr/bin/luit.x11-utils by luit' Removing 'diversion of /usr/share/man/man1/luit.1.gz to /usr/share/man/man1/luit.x11-utils.1.gz by luit' Removing lynx-common (2.9.0rel.0-2) ... Removing mafft (7.505-1) ... Removing mailcap (3.70+nmu1) ... Removing manpages-dev (6.05.01-1) ... Removing manpages (6.05.01-1) ... Removing maq (0.7.1-9) ... Removing mariadb-common (1:10.11.6-2) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing menu (2.1.50) ... Removing mustang (3.2.4-1) ... Removing mysql-common (5.8+1.1.0) ... Removing ncbi-data (6.1.20170106+dfsg1-10) ... Removing ncoils (2002-9) ... Removing ocl-icd-libopencl1:amd64 (2.3.2-1) ... Removing openmpi-common (4.1.6-5) ... Removing pal2nal (14.1-3) ... Removing paml (4.9j+dfsg-4) ... Removing phylip (1:3.697+dfsg-3) ... Removing poa (2.0+20060928-8) ... Removing poppler-data (0.4.12-1) ... Removing prank (0.0.170427+dfsg-3) ... Removing primer3 (2.6.1-4) ... Removing probalign (1.4-10) ... Removing probcons (1.12-14) ... Removing proda (1.0-14) ... Removing prodigal (1:2.6.3-6) ... Removing psmisc (23.6-2) ... Removing publicsuffix (20231001.0357-0.1) ... Removing python3-babel (2.10.3-3) ... Removing python-babel-localedata (2.10.3-3) ... Removing python-biopython-doc (1.81+dfsg-3) ... Removing python-odf-tools (1.4.2-2) ... Removing python-tables-data (3.7.0-10) ... Removing python3-bs4 (4.12.3-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-contourpy (1.0.7-1+b2) ... Removing python3-cssselect (1.2.0-2) ... Removing python3-cycler (0.11.0-1) ... Removing python3-dateutil (2.8.2-3) ... Removing python3-odf (1.4.2-2) ... Removing python3-defusedxml (0.7.1-2) ... Removing python3-et-xmlfile (1.0.1-2.1) ... Removing python3-freetype (2.4.0-1) ... Removing python3-html5lib (1.1-3) ... Removing python3-pytest (7.4.4-1) ... Removing python3-iniconfig (1.1.1-2) ... Removing python3-jinja2 (3.1.2-1) ... Removing python3-kiwisolver (1.4.4-1+b2) ... Removing python3-markupsafe (2.1.3-1+b1) ... Removing python3-olefile (0.46-3) ... Removing python3-packaging (23.2-1) ... Removing python3-pygments (2.15.1+dfsg-1) ... Removing python3-pluggy (1.3.0-1) ... Removing python3-psutil (5.9.8-1) ... Removing python3-pyparsing (3.1.1-1) ... Removing python3-soupsieve (2.5-1) ... Removing python3-webencodings (0.5.1-5) ... Removing raxml (8.2.13+dfsg-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.20) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31) ... Removing sim4 (0.0.20121010-8) ... Removing t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Removing tigr-glimmer (3.02b-6+b1) ... Removing unzip (6.0-28) ... Removing wise-data (2.4.1-23) ... Removing xdg-user-dirs (0.18-1) ... Removing xz-utils (5.4.5-0.3) ... Removing zip (3.0-13) ... Removing libibverbs1:amd64 (48.0-1.1) ... Removing adduser (3.137) ... Removing libgtk2.0-0:amd64 (2.24.33-3) ... Removing adwaita-icon-theme (45.0-2) ... Removing libatk1.0-0:amd64 (2.50.0-1+b1) ... Removing at-spi2-common (2.50.0-1) ... Removing gcc-13 (13.2.0-13) ... Removing binutils (2.42-2) ... Removing gcc-13-x86-64-linux-gnu (13.2.0-13) ... Removing binutils-x86-64-linux-gnu (2.42-2) ... Removing libgprofng0:amd64 (2.42-2) ... Removing libctf0:amd64 (2.42-2) ... Removing libbinutils:amd64 (2.42-2) ... Removing binutils-common:amd64 (2.42-2) ... Removing openjdk-17-jre-headless:amd64 (17.0.10+7-1) ... Removing ca-certificates-java (20240118) ... Removing cpp-13-x86-64-linux-gnu (13.2.0-13) ... Removing systemd (255.3-1) ... Removing libcryptsetup12:amd64 (2:2.6.1-6+b1) ... Removing libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... Removing libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... Removing libpango-1.0-0:amd64 (1.51.0+ds-4) ... Removing fontconfig (2.14.2-6+b1) ... Removing libxft2:amd64 (2.3.6-1) ... Removing gtk-update-icon-cache (3.24.41-1) ... Removing hicolor-icon-theme (0.17-2) ... Removing java-common (0.75) ... Removing libsystemd-shared:amd64 (255.3-1) ... Removing libapparmor1:amd64 (3.0.12-1+b2) ... Removing libargon2-1:amd64 (0~20190702+dfsg-4+b1) ... Removing libgcc-13-dev:amd64 (13.2.0-13) ... Removing libasan8:amd64 (14-20240201-3) ... Removing libasound2:amd64 (1.2.10-3) ... Removing libasound2-data (1.2.10-3) ... Removing libatomic1:amd64 (14-20240201-3) ... Removing libcups2:amd64 (2.4.7-1+b1) ... Removing libavahi-client3:amd64 (0.8-13+b1) ... Removing libavahi-common3:amd64 (0.8-13+b1) ... Removing libavahi-common-data:amd64 (0.8-13+b1) ... Removing libmodule-implementation-perl (0.09-2) ... Removing libmodule-runtime-perl (0.016-2) ... Removing libparams-classify-perl:amd64 (0.015-2+b2) ... Removing libdevel-callchecker-perl:amd64 (0.008-2+b1) ... Removing libb-hooks-op-check-perl:amd64 (0.22-2+b2) ... Removing libbio-perl-perl (1.7.8-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libcairo2:amd64 (1.18.0-1+b1) ... Removing libcc1-0:amd64 (14-20240201-3) ... Removing libxml-parser-perl (2.47-1+b1) ... Removing libctf-nobfd0:amd64 (2.42-2) ... Removing libdata-stag-perl (0.14-3) ... Removing libthai0:amd64 (0.1.29-2) ... Removing libdatrie1:amd64 (0.2.13-3) ... Removing libdbus-1-3:amd64 (1.14.10-4) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-3) ... Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.19-1) ... Removing libdrm2:amd64 (2.4.120-1) ... Removing libdrm-common (2.4.120-1) ... Removing libdynaloader-functions-perl (0.003-3) ... Removing libfdisk1:amd64 (2.39.3-6) ... Removing libharfbuzz0b:amd64 (8.3.0-2) ... Removing libfribidi0:amd64 (1.0.13-3+b1) ... Removing libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... Removing shared-mime-info (2.4-1) ... Removing libglib2.0-0:amd64 (2.78.3-2) ... Removing libgomp1:amd64 (14-20240201-3) ... Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing libgtk2.0-common (2.24.33-3) ... Removing libhwasan0:amd64 (14-20240201-3) ... Removing libio-string-perl (1.08-4) ... Removing libisl23:amd64 (0.26-3+b2) ... Removing libitm1:amd64 (14-20240201-3) ... Removing libjansson4:amd64 (2.14-2+b2) ... Removing libjbig0:amd64 (2.1-6.1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Removing libjson-c5:amd64 (0.17-1) ... Removing libkmod2:amd64 (31-1) ... Removing liblcms2-2:amd64 (2.14-2) ... Removing liblerc4:amd64 (4.0.0+ds-4) ... Removing liblsan0:amd64 (14-20240201-3) ... Removing libmpc3:amd64 (1.3.1-1+b2) ... Removing libmpfr6:amd64 (4.2.1-1) ... Removing libnl-route-3-200:amd64 (3.7.0-0.3) ... Removing libnl-3-200:amd64 (3.7.0-0.3) ... Removing libnss3:amd64 (2:3.96.1-1) ... Removing libnspr4:amd64 (2:4.35-1.1) ... Removing libpcsclite1:amd64 (2.0.1-1) ... Removing libpixman-1-0:amd64 (0.42.2-1) ... Removing libquadmath0:amd64 (14-20240201-3) ... Removing libsframe1:amd64 (2.42-2) ... Removing libwebp7:amd64 (1.3.2-0.3) ... Removing libthai-data (0.1.29-2) ... Removing libtsan2:amd64 (14-20240201-3) ... Removing libubsan1:amd64 (14-20240201-3) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libxcomposite1:amd64 (1:0.4.5-1) ... Removing libxcursor1:amd64 (1:1.2.1-1) ... Removing libxdamage1:amd64 (1:1.1.6-1) ... Removing libxfixes3:amd64 (1:6.0.0-2) ... Removing libxi6:amd64 (2:1.8-1+b1) ... Removing libxinerama1:amd64 (2:1.1.4-3) ... Removing libxrandr2:amd64 (2:1.5.2-2+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing systemd-dev (255.3-1) ... Removing libfontconfig1:amd64 (2.14.2-6+b1) ... Removing fontconfig-config (2.14.2-6+b1) ... Removing fonts-urw-base35 (20200910-7) ... Removing xfonts-utils (1:7.7+6) ... Removing libfontenc1:amd64 (1:1.1.4-1+b2) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1+b1) ... Removing libpng16-16:amd64 (1.6.40-3) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libx11-data (2:1.8.7-1) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing ruby3.1 (3.1.2-8) ... Removing rubygems-integration (1.18) ... Removing dmsetup (2:1.02.185-3) ... dpkg: warning: while removing dmsetup, directory '/usr/lib/udev/rules.d' not empty so not removed Removing libdevmapper1.02.1:amd64 (2:1.02.185-3) ... Removing python3-ufolib2 (0.16.0+dfsg1-1) ... Removing libwww-perl (6.73-1) ... Removing libhttp-negotiate-perl (6.01-2) ... Removing libheif1:amd64 (1.17.6-1) ... Removing libheif-plugin-dav1d:amd64 (1.17.6-1) ... Removing libdav1d7:amd64 (1.3.0-2+b1) ... Removing ruby-sdbm:amd64 (1.0.0-5+b2) ... Removing python3-attr (23.2.0-1) ... Removing libfile-listing-perl (6.16-1) ... Removing libhttp-cookies-perl (6.11-1) ... Removing libhtml-tree-perl (5.07-3) ... Removing libhtml-parser-perl:amd64 (3.81-1+b1) ... Removing libhtml-tagset-perl (3.20-6) ... Removing liblwp-protocol-https-perl (6.11-1) ... Removing libio-socket-ssl-perl (2.085-1) ... Removing libnet-http-perl (6.23-1) ... Removing libnet-ssleay-perl:amd64 (1.94-1) ... Removing libsharpyuv0:amd64 (1.3.2-0.3) ... Removing libtry-tiny-perl (0.31-2) ... Removing libwww-robotrules-perl (6.02-1) ... Removing perl-openssl-defaults:amd64 (7+b1) ... Removing libruby3.1:amd64 (3.1.2-8) ... Removing rake (13.0.6-3) ... Removing ruby (1:3.1) ... Removing ruby-rubygems (3.4.20-1) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-fonttools (4.46.0-1) ... Removing python3-scipy (1.10.1-10) ... Removing python3-numpy (1:1.24.2-2) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing libhttp-message-perl (6.45-1) ... Removing libclone-perl:amd64 (0.46-1+b1) ... Removing libheif-plugin-libde265:amd64 (1.17.6-1) ... Removing libde265-0:amd64 (1.0.15-1) ... Removing libedit2:amd64 (3.1-20230828-1) ... Removing libencode-locale-perl (1.05-3) ... Removing python3.12 (3.12.1-2) ... Removing python3.12-minimal (3.12.1-2) ... Removing python3-sympy (1.12-7) ... Removing libhttp-date-perl (6.06-1) ... Removing libgfortran5:amd64 (14-20240201-3) ... Removing libpython3.12-stdlib:amd64 (3.12.1-2) ... Removing python3-lxml:amd64 (5.1.0-1) ... Removing libio-html-perl (1.004-3) ... Removing liblwp-mediatypes-perl (6.04-2) ... Removing libncurses6:amd64 (6.4+20240113-1) ... Removing libpython3.12-minimal:amd64 (3.12.1-2) ... Removing libruby:amd64 (1:3.1) ... Removing libtimedate-perl (2.3300-2) ... Removing liburi-perl (5.25-1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing openssl (3.1.4-2) ... Removing python3-fs (2.4.16-3) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-brotli (1.1.0-2+b3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-lz4 (4.0.2+dfsg-1+b3) ... Removing python3-mpmath (1.2.1-2) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-six (1.16.0-4) ... Removing python3-tz (2023.4-1) ... Removing python3-unicodedata2 (15.1.0+ds-1+b1) ... Removing ruby-net-telnet (0.2.0-1) ... Removing ruby-xmlrpc (0.3.2-2) ... Removing ruby-webrick (1.8.1-1) ... Removing unicode-data (15.1.0-1) ... Removing libbsd0:amd64 (0.11.8-1) ... Removing python3 (3.11.6-1) ... Removing python3-minimal (3.11.6-1) ... Removing perl (5.38.2-3) ... Removing libperl5.38:amd64 (5.38.2-3) ... Removing libgdbm-compat4:amd64 (1.23-5) ... Removing libgdbm6:amd64 (1.23-5) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Removing libicu72:amd64 (72.1-4) ... Removing libpython3-stdlib:amd64 (3.11.6-1) ... Removing python3.11 (3.11.7-2) ... Removing perl-modules-5.38 (5.38.2-3) ... Removing python3.11-minimal (3.11.7-2) ... Removing libexpat1:amd64 (2.5.0-2+b2) ... Removing libpython3.11-stdlib:amd64 (3.11.7-2) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240113-1) ... Removing libnsl2:amd64 (1.3.0-3) ... Removing libpython3.11-minimal:amd64 (3.11.7-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-3) ... Removing libsqlite3-0:amd64 (3.45.0-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-3) ... Removing libtirpc3:amd64 (1.3.4+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-5) ... Removing libkrb5-3:amd64 (1.20.1-5) ... Removing libk5crypto3:amd64 (1.20.1-5) ... Removing libkeyutils1:amd64 (1.6.3-2+b2) ... Removing libkrb5support0:amd64 (1.20.1-5) ... Removing libtirpc-common (1.3.4+ds-1) ... Processing triggers for libc-bin (2.37-15~deb13u1) ... 6m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-get', 'remove', 'adduser', 'adwaita-icon-theme', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2-bin', 'aragorn', 'at-spi2-common', 'at-spi2-core', 'bamtools', 'bedtools', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blends-common', 'blt', 'bowtie', 'bowtie2', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'cd-hit', 'circos', 'circos-tools', 'clustalo', 'clustalw', 'cpp', 'cpp-13', 'cpp-13-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jdk-headless', 'default-jre', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dmsetup', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-liberation-sans-narrow', 'fonts-liberation2', 'fonts-lyx', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'g++-', 'g++-13', 'g++-13-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gawk', 'gcc', 'gcc-13', 'gcc-13-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'ghostscript', 'graphviz', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'isympy-common', 'isympy3', 'java-common', 'javascript-common', 'kalign', 'krb5-locales', 'lagan', 'less', 'libabsl20220623:amd64', 'libace-perl', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-munkres-perl', 'libann0', 'libaom3:amd64', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargon2-1:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasan8:amd64', 'libasound2:amd64', 'libasound2-data', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl:amd64', 'libbamtools2.5.2:amd64', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-searchio-hmmer-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcapnp-1.0.1:amd64', 'libcapture-tiny-perl', 'libcarp-always-perl', 'libcarp-clan-perl', 'libcbor0.10:amd64', 'libcc1-0:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl:amd64', 'libconfig-general-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-dev:amd64', 'libcrypt-rc4-perl', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-dumper-simple-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl:amd64', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdevmapper1.02.1:amd64', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libencode-perl:amd64', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfdisk1:amd64', 'libfido2-1:amd64', 'libfile-basedir-perl', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfont-ttf-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgail-common:amd64', 'libgail18:amd64', 'libgav1-1:amd64', 'libgcc-13-dev:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgetopt-simple-perl', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraph-perl', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs-common', 'libgs10:amd64', 'libgs10-common', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-bin', 'libgtk2.0-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libheap-perl', 'libheif-plugin-aomenc:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif-plugin-x265:amd64', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn12:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-all-perl', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjson-c5:amd64', 'libjsoncpp25:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmod2:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'liblist-allutils-perl', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblist-someutils-perl', 'liblist-someutils-xs-perl:amd64', 'liblist-utilsby-perl', 'libllvm17:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-bezier-perl', 'libmath-derivative-perl', 'libmath-round-perl', 'libmath-spline-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmunge2:amd64', 'libmurmurhash2:amd64', 'libnamespace-clean-perl', 'libncbi6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnlopt0:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libnumber-format-perl', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl:amd64', 'libparams-validate-perl:amd64', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.38:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpod-coverage-perl', 'libpod-parser-perl', 'libpostscript-perl', 'libpq5:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-common-perl', 'librole-tiny-perl', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libruby:amd64', 'libruby3.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libset-intspan-perl', 'libset-object-perl', 'libset-scalar-perl', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstatistics-basic-perl', 'libstatistics-descriptive-perl', 'libstdc++-13-dev:amd64', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl:amd64', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libsvtav1enc1d1:amd64', 'libswiss-perl', 'libsystemd-shared:amd64', 'libsz2:amd64', 'libtask-weaken-perl', 'libtcl8.6:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-pod-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl:amd64', 'libtext-diff-perl', 'libtext-format-perl', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan2:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl:amd64', 'libubsan1:amd64', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libx265-199:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbfile1:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl:amd64', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxstring-perl:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyuv0:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'luit', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'mash', 'med-config', 'media-types', 'menu', 'mesa-vulkan-drivers:amd64', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-tools-bin', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jdk-headless:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'parallel', 'perl', 'perl-doc', 'perl-modules-5.38', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'prodigal', 'prokka', 'psmisc', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-chardet', 'python3-contourpy', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-html5lib', 'python3-iniconfig', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-psutil', 'python3-pygments', 'python3-pyparsing', 'python3-pytest', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3-simplejson', 'python3-six', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-webencodings', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'rake', 'raxml', 'readline-common', 'rpcsvc-proto', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'sim4', 'spades', 'sysstat', 'systemd', 'systemd-dev', 'systemd-sysv', 'systemd-timesyncd', 't-coffee', 'tigr-glimmer', 'tk8.6-blt2.5', 'tm-align', 'trimmomatic', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'plasmidid'] 6m43.2s INFO: Running scripts post_remove 6m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_remove_exceptions'] 6m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_remove_exceptions'] 6m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg', '--purge', 'adduser', 'adwaita-icon-theme', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2-bin', 'aragorn', 'at-spi2-common', 'at-spi2-core', 'bamtools', 'bedtools', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blends-common', 'blt', 'bowtie', 'bowtie2', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'cd-hit', 'circos', 'circos-tools', 'clustalo', 'clustalw', 'cpp', 'cpp-13', 'cpp-13-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jdk-headless', 'default-jre', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dmsetup', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-liberation-sans-narrow', 'fonts-liberation2', 'fonts-lyx', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'g++', 'g++-13', 'g++-13-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gawk', 'gcc', 'gcc-13', 'gcc-13-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'ghostscript', 'graphviz', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'isympy-common', 'isympy3', 'java-common', 'javascript-common', 'kalign', 'krb5-locales', 'lagan', 'less', 'libabsl20220623:amd64', 'libace-perl', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-munkres-perl', 'libann0', 'libaom3:amd64', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargon2-1:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasan8:amd64', 'libasound2:amd64', 'libasound2-data', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl:amd64', 'libbamtools2.5.2:amd64', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-searchio-hmmer-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcapnp-1.0.1:amd64', 'libcapture-tiny-perl', 'libcarp-always-perl', 'libcarp-clan-perl', 'libcbor0.10:amd64', 'libcc1-0:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl:amd64', 'libconfig-general-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-dev:amd64', 'libcrypt-rc4-perl', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-dumper-simple-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl:amd64', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdevmapper1.02.1:amd64', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libencode-perl:amd64', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfdisk1:amd64', 'libfido2-1:amd64', 'libfile-basedir-perl', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfont-ttf-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgail-common:amd64', 'libgail18:amd64', 'libgav1-1:amd64', 'libgcc-13-dev:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgetopt-simple-perl', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraph-perl', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs-common', 'libgs10:amd64', 'libgs10-common', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-bin', 'libgtk2.0-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libheap-perl', 'libheif-plugin-aomenc:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif-plugin-x265:amd64', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn12:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-all-perl', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjson-c5:amd64', 'libjsoncpp25:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmod2:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'liblist-allutils-perl', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblist-someutils-perl', 'liblist-someutils-xs-perl:amd64', 'liblist-utilsby-perl', 'libllvm17:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-bezier-perl', 'libmath-derivative-perl', 'libmath-round-perl', 'libmath-spline-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmunge2:amd64', 'libmurmurhash2:amd64', 'libnamespace-clean-perl', 'libncbi6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnlopt0:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libnumber-format-perl', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl:amd64', 'libparams-validate-perl:amd64', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.38:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpod-coverage-perl', 'libpod-parser-perl', 'libpostscript-perl', 'libpq5:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-common-perl', 'librole-tiny-perl', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libruby:amd64', 'libruby3.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libset-intspan-perl', 'libset-object-perl', 'libset-scalar-perl', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstatistics-basic-perl', 'libstatistics-descriptive-perl', 'libstdc++-13-dev:amd64', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl:amd64', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libsvtav1enc1d1:amd64', 'libswiss-perl', 'libsystemd-shared:amd64', 'libsz2:amd64', 'libtask-weaken-perl', 'libtcl8.6:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-pod-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl:amd64', 'libtext-diff-perl', 'libtext-format-perl', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan2:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl:amd64', 'libubsan1:amd64', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libx265-199:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbfile1:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl:amd64', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxstring-perl:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyuv0:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'luit', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'mash', 'med-config', 'media-types', 'menu', 'mesa-vulkan-drivers:amd64', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-tools-bin', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jdk-headless:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'parallel', 'perl', 'perl-doc', 'perl-modules-5.38', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'prodigal', 'prokka', 'psmisc', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-chardet', 'python3-contourpy', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-html5lib', 'python3-iniconfig', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-psutil', 'python3-pygments', 'python3-pyparsing', 'python3-pytest', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3-simplejson', 'python3-six', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-webencodings', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'rake', 'raxml', 'readline-common', 'rpcsvc-proto', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'sim4', 'spades', 'sysstat', 'systemd', 'systemd-dev', 'systemd-sysv', 'systemd-timesyncd', 't-coffee', 'tigr-glimmer', 'tk8.6-blt2.5', 'tm-align', 'trimmomatic', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip'] 6m45.5s DUMP: (Reading database ... 5572 files and directories currently installed.) Purging configuration files for adduser (3.137) ... 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Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20240118) ... dpkg: warning: ignoring request to remove cd-hit which isn't installed Purging configuration files for circos (0.69.9+dfsg-2) ... dpkg: warning: ignoring request to remove circos-tools which isn't installed dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-7) ... 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Purging configuration files for fontconfig-config (2.14.2-6+b1) ... dpkg: warning: ignoring request to remove fonts-circos-symbols which isn't installed dpkg: warning: ignoring request to remove fonts-cmu which isn't installed Purging configuration files for fonts-dejavu-core (2.37-8) ... dpkg: warning: ignoring request to remove fonts-dejavu-extra which isn't installed Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for fonts-droid-fallback (1:6.0.1r16-1.1) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-liberation which isn't installed dpkg: warning: ignoring request to remove fonts-liberation-sans-narrow which isn't installed dpkg: warning: ignoring request to remove fonts-liberation2 which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-noto-mono (20201225-2) ... Purging configuration files for fonts-urw-base35 (20200910-7) ... dpkg: warning: ignoring request to remove fsa which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-13 which isn't installed dpkg: warning: ignoring request to remove g++-13-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which isn't installed Purging configuration files for gawk (1:5.2.1-2) ... dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-13 which isn't installed dpkg: warning: ignoring request to remove gcc-13-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove ghostscript which isn't installed Purging configuration files for graphviz (2.42.2-8) ... dpkg: warning: ignoring request to remove gsettings-desktop-schemas which isn't installed dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed dpkg: warning: ignoring request to remove hmmer which isn't installed dpkg: warning: ignoring request to remove hyphy-common which isn't installed dpkg: warning: ignoring request to remove hyphy-pt which isn't installed Purging configuration files for ibverbs-providers:amd64 (48.0-1.1) ... dpkg: warning: ignoring request to remove infernal which isn't installed dpkg: warning: ignoring request to remove isympy-common which isn't installed dpkg: warning: ignoring request to remove isympy3 which isn't installed Purging configuration files for java-common (0.75) ... Purging configuration files for javascript-common (11+nmu1) ... dpkg: warning: ignoring request to remove kalign which isn't installed dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove lagan which isn't installed dpkg: warning: ignoring request to remove less which isn't installed dpkg: warning: ignoring request to remove libabsl20220623 which isn't installed dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed dpkg: warning: ignoring request to remove libaom3 which isn't installed dpkg: 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which isn't installed dpkg: warning: ignoring request to remove libcairo-gobject2 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcapnp-1.0.1 which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcarp-always-perl which isn't installed dpkg: warning: ignoring request to remove libcarp-clan-perl which isn't installed dpkg: warning: ignoring request to remove libcbor0.10 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libconfig-general-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-4) ... dpkg: warning: ignoring request to remove libcrypt-rc4-perl which isn't installed dpkg: warning: ignoring request to remove libcryptsetup12 which isn't installed dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: 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dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libdynaloader-functions-perl which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libencode-perl which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libexception-class-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfcgi-bin which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libfcgi0ldbl which isn't installed dpkg: warning: ignoring request to remove libfdisk1 which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libfile-basedir-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfile-sort-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfont-ttf-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfreezethaw-perl which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgail-common which isn't installed dpkg: warning: ignoring request to 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Purging configuration files for libgtk2.0-0:amd64 (2.24.33-3) ... dpkg: warning: ignoring request to remove libgtk2.0-bin which isn't installed Purging configuration files for libgtk2.0-common (2.24.33-3) ... dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed dpkg: warning: ignoring request to remove libgts-bin which isn't installed Purging configuration files for libgvc6 (2.42.2-8) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libheap-perl which isn't installed dpkg: warning: ignoring request to remove libheif-plugin-aomenc which isn't installed dpkg: warning: ignoring request to remove libheif-plugin-dav1d which isn't installed dpkg: warning: ignoring request to remove libheif-plugin-libde265 which isn't installed dpkg: warning: 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Purging configuration files for shared-mime-info (2.4-1) ... dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove spades which isn't installed Purging configuration files for sysstat (12.7.5-2) ... Purging configuration files for systemd (255.3-1) ... dpkg: warning: while removing systemd, directory '/usr/lib/lsb/init-functions.d' not empty so not removed dpkg: warning: ignoring request to remove systemd-dev which isn't installed dpkg: warning: ignoring request to remove systemd-sysv which isn't installed Purging configuration files for systemd-timesyncd (255.3-1) ... dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed dpkg: warning: ignoring request to remove trimmomatic which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for unzip (6.0-28) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove wise-data which isn't installed Purging configuration files for x11-common (1:7.7+23) ... Purging configuration files for x11-utils (7.7+6) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.18-1) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... Purging configuration files for xml-core (0.19) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 6m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg', '--purge', 'adduser', 'adwaita-icon-theme', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2-bin', 'aragorn', 'at-spi2-common', 'at-spi2-core', 'bamtools', 'bedtools', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blends-common', 'blt', 'bowtie', 'bowtie2', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'cd-hit', 'circos', 'circos-tools', 'clustalo', 'clustalw', 'cpp', 'cpp-13', 'cpp-13-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jdk-headless', 'default-jre', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dmsetup', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-liberation-sans-narrow', 'fonts-liberation2', 'fonts-lyx', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'g++', 'g++-13', 'g++-13-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gawk', 'gcc', 'gcc-13', 'gcc-13-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'ghostscript', 'graphviz', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'isympy-common', 'isympy3', 'java-common', 'javascript-common', 'kalign', 'krb5-locales', 'lagan', 'less', 'libabsl20220623:amd64', 'libace-perl', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-munkres-perl', 'libann0', 'libaom3:amd64', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargon2-1:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasan8:amd64', 'libasound2:amd64', 'libasound2-data', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl:amd64', 'libbamtools2.5.2:amd64', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-searchio-hmmer-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcapnp-1.0.1:amd64', 'libcapture-tiny-perl', 'libcarp-always-perl', 'libcarp-clan-perl', 'libcbor0.10:amd64', 'libcc1-0:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl:amd64', 'libconfig-general-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-dev:amd64', 'libcrypt-rc4-perl', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-dumper-simple-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl:amd64', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdevmapper1.02.1:amd64', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libencode-perl:amd64', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfdisk1:amd64', 'libfido2-1:amd64', 'libfile-basedir-perl', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfont-ttf-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgail-common:amd64', 'libgail18:amd64', 'libgav1-1:amd64', 'libgcc-13-dev:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgetopt-simple-perl', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraph-perl', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs-common', 'libgs10:amd64', 'libgs10-common', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-bin', 'libgtk2.0-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libheap-perl', 'libheif-plugin-aomenc:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif-plugin-x265:amd64', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn12:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-all-perl', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjson-c5:amd64', 'libjsoncpp25:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmod2:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'liblist-allutils-perl', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblist-someutils-perl', 'liblist-someutils-xs-perl:amd64', 'liblist-utilsby-perl', 'libllvm17:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-bezier-perl', 'libmath-derivative-perl', 'libmath-round-perl', 'libmath-spline-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmunge2:amd64', 'libmurmurhash2:amd64', 'libnamespace-clean-perl', 'libncbi6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnlopt0:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libnumber-format-perl', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl:amd64', 'libparams-validate-perl:amd64', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.38:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpod-coverage-perl', 'libpod-parser-perl', 'libpostscript-perl', 'libpq5:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-common-perl', 'librole-tiny-perl', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libruby:amd64', 'libruby3.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libset-intspan-perl', 'libset-object-perl', 'libset-scalar-perl', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstatistics-basic-perl', 'libstatistics-descriptive-perl', 'libstdc++-13-dev:amd64', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl:amd64', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libsvtav1enc1d1:amd64', 'libswiss-perl', 'libsystemd-shared:amd64', 'libsz2:amd64', 'libtask-weaken-perl', 'libtcl8.6:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-pod-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl:amd64', 'libtext-diff-perl', 'libtext-format-perl', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan2:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl:amd64', 'libubsan1:amd64', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libx265-199:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbfile1:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl:amd64', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxstring-perl:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyuv0:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'luit', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'mash', 'med-config', 'media-types', 'menu', 'mesa-vulkan-drivers:amd64', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-tools-bin', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jdk-headless:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'parallel', 'perl', 'perl-doc', 'perl-modules-5.38', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'prodigal', 'prokka', 'psmisc', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-cairo', 'python3-chardet', 'python3-contourpy', 'python3-cssselect', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-et-xmlfile', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-html5lib', 'python3-iniconfig', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-psutil', 'python3-pygments', 'python3-pyparsing', 'python3-pytest', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3-simplejson', 'python3-six', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-webencodings', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'rake', 'raxml', 'readline-common', 'rpcsvc-proto', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'sim4', 'spades', 'sysstat', 'systemd', 'systemd-dev', 'systemd-sysv', 'systemd-timesyncd', 't-coffee', 'tigr-glimmer', 'tk8.6-blt2.5', 'tm-align', 'trimmomatic', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip'] 6m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg', '--purge', 'plasmidid'] 6m45.5s DUMP: (Reading database ... 5237 files and directories currently installed.) Purging configuration files for plasmidid (1.6.5+dfsg-2) ... 6m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg', '--purge', 'plasmidid'] 6m45.5s INFO: Running scripts post_purge 6m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_purge_exceptions'] 6m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_purge_exceptions'] 6m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg', '--purge', '--pending'] 6m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg', '--purge', '--pending'] 6m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg', '--remove', '--pending'] 6m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg', '--remove', '--pending'] 6m45.5s INFO: Running scripts post_test 6m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_test_exceptions'] 6m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'tmp/scripts/post_test_exceptions'] 6m45.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp97__jce4'] 6m45.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp97__jce4'] 6m46.3s ERROR: WARN: Broken symlinks: /etc/vconsole.conf -> default/keyboard /etc/default/locale -> ../locale.conf /usr/lib/x86_64-linux-gnu/libmpi_usempi_ignore_tkr-gfortranso.40 -> libmpi_usempi_ignore_tkr-gfortran.so.40.30.0 6m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg-divert', '--list'] 6m46.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 6m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'dpkg-divert', '--list'] 6m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-get', 'clean'] 6m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp97__jce4', 'apt-get', 'clean'] 6m46.5s DEBUG: Recording chroot state 6m47.0s INFO: Warning: Package purging left files on system: /etc/default/locale -> ../locale.conf not owned /etc/vconsole.conf -> default/keyboard not owned /root/.ssh/ not owned /usr/lib/x86_64-linux-gnu/libmpi_usempi_ignore_tkr-gfortranso.40 -> libmpi_usempi_ignore_tkr-gfortran.so.40.30.0 not owned /var/cache/private/ not owned /var/lib/private/ not owned /var/lib/systemd/coredump/ not owned /var/lib/systemd/ephemeral-trees/ not owned /var/lib/systemd/pstore/ not owned /var/log/private/ not owned 6m47.0s INFO: PASS: Installation and purging test. 6m47.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/shm'] 6m47.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/shm'] 6m47.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/console'] 6m47.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/console'] 6m47.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/ptmx'] 6m47.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/ptmx'] 6m47.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/pts'] 6m47.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp97__jce4/dev/pts'] 6m47.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp97__jce4/proc'] 6m47.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp97__jce4/proc'] 6m47.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp97__jce4'] 6m47.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp97__jce4'] 6m47.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp97__jce4 6m47.5s INFO: PASS: All tests. 6m47.5s INFO: piuparts run ends. ret=0 End: 2024-02-07 13:10:10 GMT