Start: 2024-12-08 04:06:07 GMT Package: srst2 Version: 0.2.0-13 Installed-Size: 265 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, bowtie2, cd-hit, samtools, python3-scipy, python3-biopython Recommends: python3-rpy2 Description: Short Read Sequence Typing for Bacterial Pathogens Homepage: https://katholt.github.io/srst2/ Description-md5: 0b05e0f1dc4b9a9dedc867def03c95b1 Section: science Priority: optional Filename: pool/main/s/srst2/srst2_0.2.0-13_amd64.deb Size: 61288 MD5sum: cecf67e018d45cd5e6ecee791c9aae36 SHA256: 37141e9f8eb509d0172e3236ad3dfeefee01641fed82a7ba985c99045ce1cca9 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie --no-upgrade-test --apt srst2=0.2.0-13 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie --no-upgrade-test --apt srst2=0.2.0-13 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpkkrrzbrt 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpkkrrzbrt 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpkkrrzbrt/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-get', 'update'] 0m2.9s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [172 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9341 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6270 kB] Fetched 15.8 MB in 2s (8966 kB/s) Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libdebconfclient0 libgpg-error0 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 92.2 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libdebconfclient0 amd64 0.274 [10.1 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.51-2 [82.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 92.2 kB in 0s (1771 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5142 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.274_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.274) over (0.273) ... Setting up libdebconfclient0:amd64 (0.274) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5142 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.51-2_amd64.deb ... Unpacking libgpg-error0:amd64 (1.51-2) over (1.50-4) ... Setting up libgpg-error0:amd64 (1.51-2) ... Processing triggers for libc-bin (2.40-4) ... 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s DUMP: 5d5784c8aa98def0dcd17a721a7cc5f6 - 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s INFO: Running scripts post_setup 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_setup_dummy_users'] 0m5.4s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_setup_dummy_users'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_setup_forbid_home'] 0m5.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_setup_forbid_home'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_setup_minimize'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_setup_minimize'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-get', 'clean'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-get', 'clean'] 0m5.5s DEBUG: Recording chroot state 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.9s DUMP: install ok installed apt apt 2.9.16 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-11 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.2~rc1-2 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-8 install ok installed gpgv gpgv 2.2.45-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.16 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libblkid1:amd64 libblkid1 2.40.2-11 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-4 install ok installed libc6:amd64 libc6 2.40-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2~rc1-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.274 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2~rc1-2 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.51-2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-11 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-11 install ok installed libss2:amd64 libss2 1.47.2~rc1-2 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-8 install ok installed libsystemd0:amd64 libsystemd0 257~rc3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 257~rc3-1 install ok installed libunistring5:amd64 libunistring5 1.2-1+b1 install ok installed libuuid1:amd64 libuuid1 2.40.2-11 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-11 install ok installed login.defs login.defs 1:4.16.0-5 install ok installed logsave logsave 1.47.2~rc1-2 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-11 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-5 install ok installed perl-base perl-base 5.40.0-8 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-11 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg-divert', '--list'] 0m5.9s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg-divert', '--list'] 0m5.9s INFO: Running scripts is_testable 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/is_testable_uninstallable'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/is_testable_uninstallable'] 0m5.9s INFO: apt-cache does not know about any of the requested packages 0m5.9s INFO: Running scripts pre_test 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_test_exceptions'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_test_exceptions'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_test_root_password'] 0m5.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_test_root_password'] 0m5.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt'] 0m6.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt'] 0m6.6s DEBUG: No broken symlinks as far as we can find. 0m6.6s INFO: Running scripts pre_install 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_install_database-server'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_install_database-server'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_install_exceptions'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_install_exceptions'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_install_extras'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_install_extras'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt'] 0m7.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt'] 0m7.3s DEBUG: No broken symlinks as far as we can find. 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-cache', 'policy'] 0m8.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-cache', 'policy'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-cache', 'policy', 'srst2'] 0m8.1s DUMP: srst2: Installed: (none) Candidate: 0.2.0-13 Version table: 0.2.0-13 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-cache', 'policy', 'srst2'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-get', '-y', 'install', 'srst2=0.2.0-13'] 1m39.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser binutils binutils-common binutils-x86-64-linux-gnu bowtie2 build-essential bzip2 bzip2-doc ca-certificates cd-hit cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dirmngr dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm icu-devtools javascript-common krb5-locales libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libapparmor1 libasan8 libassuan9 libatomic1 libauthen-sasl-perl libbinutils libblas-dev libblas3 libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libclone-perl libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdbus-1-3 libdeflate-dev libdeflate0 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1t64 libencode-locale-perl libexpat1 libfakeroot libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgbm1 libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libgfortran-14-dev libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libgles2 libglib2.0-0t64 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libice6 libicu-dev libicu72 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libio-stringy-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack-dev liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnsl2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libperl5.40 libpixman-1-0 libpkgconf3 libpng-dev libpng-tools libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libquadmath0 libraqm0 libreadline-dev libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsframe1 libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-14-dev libtcl8.6 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 liburi-perl libuv1t64 libvulkan1 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6t64 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libz3-4 linux-libc-dev luit make manpages manpages-dev media-types mesa-libgallium mesa-vulkan-drivers ncbi-blast+ ncbi-data netbase openssl patch perl perl-modules-5.40 perl-openssl-defaults pinentry-curses pkgconf pkgconf-bin publicsuffix python-babel-localedata python-biopython-doc python3 python3-autocommand python3-babel python3-biopython python3-cairo python3-cffi-backend python3-chardet python3-decorator python3-freetype python3-inflect python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-markupsafe python3-minimal python3-more-itertools python3-numpy python3-olefile python3-pil python3-pkg-resources python3-reportlab python3-rlpycairo python3-rpy2 python3-scipy python3-typeguard python3-typing-extensions python3-tzlocal python3.12 python3.12-minimal r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common rpcsvc-proto samtools sensible-utils sgml-base shared-mime-info ucf unzip w3c-sgml-lib x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xml-core xz-utils zip zlib1g-dev zutty Suggested packages: cron quota binutils-doc gprofng-gui bowtie2-examples cpp-doc gcc-14-locales cpp-14-doc default-dbus-session-bus | dbus-session-bus dbus-user-session libpam-systemd pinentry-gnome3 tor debian-keyring fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-14-multilib gcc-14-doc gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu gfortran-multilib gfortran-doc gfortran-14-multilib gfortran-14-doc libcoarrays-dev gpg-wks-server parcimonie xloadimage scdaemon apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl liblapack-doc libc-devtools glibc-doc git bzr gdbm-l10n low-memory-monitor gpm krb5-doc krb5-user icu-doc liblcms2-utils libcrypt-ssleay-perl liblzma-doc ncurses-doc pciutils readline-doc libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql lm-sensors libstdc++-14-doc tcl8.6 tk8.6 libsub-name-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools make-doc man-browser ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl debhelper pinentry-doc python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 raxml t-coffee wise python-jinja2-doc python-numpy-doc python3-dev python3-pytest python-pil-doc python3-setuptools pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python-rpy-docs python-scipy-doc python3.12-venv python3.12-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo mozilla | www-browser cwltool sgml-base-doc mesa-utils nickle cairo-5c xorg-docs-core Recommended packages: python3-biopython The following NEW packages will be installed: adduser binutils binutils-common binutils-x86-64-linux-gnu bowtie2 build-essential bzip2 bzip2-doc ca-certificates cd-hit cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dirmngr dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm icu-devtools javascript-common krb5-locales libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libapparmor1 libasan8 libassuan9 libatomic1 libauthen-sasl-perl libbinutils libblas-dev libblas3 libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libclone-perl libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdbus-1-3 libdeflate-dev libdeflate0 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1t64 libencode-locale-perl libexpat1 libfakeroot libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgbm1 libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libgfortran-14-dev libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libgles2 libglib2.0-0t64 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libice6 libicu-dev libicu72 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libio-stringy-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack-dev liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnsl2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libperl5.40 libpixman-1-0 libpkgconf3 libpng-dev libpng-tools libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libquadmath0 libraqm0 libreadline-dev libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsframe1 libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-14-dev libtcl8.6 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 liburi-perl libuv1t64 libvulkan1 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6t64 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libz3-4 linux-libc-dev luit make manpages manpages-dev media-types mesa-libgallium mesa-vulkan-drivers ncbi-blast+ ncbi-data netbase openssl patch perl perl-modules-5.40 perl-openssl-defaults pinentry-curses pkgconf pkgconf-bin publicsuffix python-babel-localedata python-biopython-doc python3 python3-autocommand python3-babel python3-biopython python3-cairo python3-cffi-backend python3-chardet python3-decorator python3-freetype python3-inflect python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-markupsafe python3-minimal python3-more-itertools python3-numpy python3-olefile python3-pil python3-pkg-resources python3-reportlab python3-rlpycairo python3-rpy2 python3-scipy python3-typeguard python3-typing-extensions python3-tzlocal python3.12 python3.12-minimal r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common rpcsvc-proto samtools sensible-utils sgml-base shared-mime-info srst2 ucf unzip w3c-sgml-lib x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xml-core xz-utils zip zlib1g-dev zutty 0 upgraded, 390 newly installed, 0 to remove and 0 not upgraded. Need to get 370 MB of archives. After this operation, 1395 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libdbus-1-3 amd64 1.14.10-6 [203 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 dbus-bin amd64 1.14.10-6 [106 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 dbus-session-bus-common all 1.14.10-6 [79.2 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libapparmor1 amd64 3.1.7-1+b3 [42.1 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 dbus-daemon amd64 1.14.10-6 [185 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 adduser all 3.137 [140 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 dbus-system-bus-common all 1.14.10-6 [80.2 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 dbus amd64 1.14.10-6 [98.5 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.8-1 [815 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.8-1 [2163 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5-2+b1 [136 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:20 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-1 [1970 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-1 [677 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get:31 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 bzip2 amd64 1.0.8-6 [40.5 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 krb5-locales all 1.21.3-3 [101 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 manpages all 6.9.1-1 [1393 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.40 all 5.40.0-8 [3015 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 libperl5.40 amd64 5.40.0-8 [4320 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.40.0-8 [267 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 xz-utils amd64 5.6.3-1+b1 [542 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 binutils-common amd64 2.43.50.20241204-2 [2629 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libsframe1 amd64 2.43.50.20241204-2 [77.4 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 libbinutils amd64 2.43.50.20241204-2 [532 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 libctf-nobfd0 amd64 2.43.50.20241204-2 [155 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libctf0 amd64 2.43.50.20241204-2 [88.5 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 libgprofng0 amd64 2.43.50.20241204-2 [809 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 binutils-x86-64-linux-gnu amd64 2.43.50.20241204-2 [2273 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 binutils amd64 2.43.50.20241204-2 [68.2 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 bowtie2 amd64 2.5.4-1 [1510 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 libc-dev-bin amd64 2.40-4 [52.0 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 linux-libc-dev all 6.11.10-1 [2461 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 libcrypt-dev amd64 1:4.4.36-5 [118 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 libc6-dev amd64 2.40-4 [1954 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 libisl23 amd64 0.27-1 [659 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 libmpfr6 amd64 4.2.1-1+b2 [724 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 libmpc3 amd64 1.3.1-1+b3 [52.2 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8 [11.1 MB] Get:65 http://deb.debian.org/debian trixie/main amd64 cpp-14 amd64 14.2.0-8 [1276 B] Get:66 http://deb.debian.org/debian trixie/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1 [4840 B] Get:67 http://deb.debian.org/debian trixie/main amd64 cpp amd64 4:14.2.0-1 [1568 B] Get:68 http://deb.debian.org/debian trixie/main amd64 libcc1-0 amd64 14.2.0-8 [42.8 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-8 [137 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 libitm1 amd64 14.2.0-8 [25.9 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-8 [9280 B] Get:72 http://deb.debian.org/debian trixie/main amd64 libasan8 amd64 14.2.0-8 [2729 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 liblsan0 amd64 14.2.0-8 [1205 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 libtsan2 amd64 14.2.0-8 [2461 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 libubsan1 amd64 14.2.0-8 [1075 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 libhwasan0 amd64 14.2.0-8 [1489 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 libquadmath0 amd64 14.2.0-8 [145 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 libgcc-14-dev amd64 14.2.0-8 [2674 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8 [21.4 MB] Get:80 http://deb.debian.org/debian trixie/main amd64 gcc-14 amd64 14.2.0-8 [530 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1 [1436 B] Get:82 http://deb.debian.org/debian trixie/main amd64 gcc amd64 4:14.2.0-1 [5136 B] Get:83 http://deb.debian.org/debian trixie/main amd64 libstdc++-14-dev amd64 14.2.0-8 [2369 kB] Get:84 http://deb.debian.org/debian trixie/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8 [12.1 MB] Get:85 http://deb.debian.org/debian trixie/main amd64 g++-14 amd64 14.2.0-8 [20.2 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:87 http://deb.debian.org/debian trixie/main amd64 g++ amd64 4:14.2.0-1 [1344 B] Get:88 http://deb.debian.org/debian trixie/main amd64 make amd64 4.3-4.1 [396 kB] Get:89 http://deb.debian.org/debian trixie/main amd64 libdpkg-perl all 1.22.11 [644 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 patch amd64 2.7.6-7 [128 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 dpkg-dev all 1.22.11 [1332 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 build-essential amd64 12.12 [4624 B] Get:93 http://deb.debian.org/debian trixie/main amd64 bzip2-doc all 1.0.8-6 [505 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 cd-hit amd64 4.8.1-4 [522 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 libassuan9 amd64 3.0.1-2 [60.6 kB] Get:96 http://deb.debian.org/debian trixie/main amd64 gpgconf amd64 2.2.45-2 [120 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libnpth0t64 amd64 1.6-3.1+b1 [18.2 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 dirmngr amd64 2.2.45-2 [368 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 fakeroot amd64 1.36-1 [75.1 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b1 [23.3 kB] Get:111 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:115 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-extra all 2.37-8 [1792 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 libgfortran-14-dev amd64 14.2.0-8 [878 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8 [11.7 MB] Get:122 http://deb.debian.org/debian trixie/main amd64 gfortran-14 amd64 14.2.0-8 [12.2 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get:124 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get:125 http://deb.debian.org/debian trixie/main amd64 gnupg-l10n all 2.2.45-2 [705 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 gpg amd64 2.2.45-2 [531 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 pinentry-curses amd64 1.2.1-4+b1 [79.7 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 gpg-agent amd64 2.2.45-2 [251 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 gpgsm amd64 2.2.45-2 [255 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 gnupg all 2.2.45-2 [376 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 gpg-wks-client amd64 2.2.45-2 [102 kB] Get:132 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get:133 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB] Get:134 http://deb.debian.org/debian trixie/main amd64 javascript-common all 11+nmu1 [6260 B] Get:135 http://deb.debian.org/debian trixie/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 libalgorithm-diff-xs-perl amd64 0.04-8+b4 [11.5 kB] Get:137 http://deb.debian.org/debian trixie/main amd64 libalgorithm-merge-perl all 0.08-5 [11.8 kB] Get:138 http://deb.debian.org/debian trixie/main amd64 libauthen-sasl-perl all 2.1700-1 [44.8 kB] Get:139 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get:140 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.0-4 [161 kB] Get:141 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get:142 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:143 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:144 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:145 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:146 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:147 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get:148 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:149 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:150 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get:151 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get:152 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get:153 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get:154 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:155 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get:156 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get:157 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get:158 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:159 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:160 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:161 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get:162 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get:163 http://deb.debian.org/debian trixie/main amd64 libdata-dump-perl all 1.25-1 [28.4 kB] Get:164 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get:165 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get:166 http://deb.debian.org/debian trixie/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get:167 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get:168 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get:169 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get:170 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b2 [51.9 kB] Get:171 http://deb.debian.org/debian trixie/main amd64 libdrm-intel1 amd64 2.4.123-1 [63.7 kB] Get:172 http://deb.debian.org/debian trixie/main amd64 libdrm-radeon1 amd64 2.4.123-1 [22.3 kB] Get:173 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get:174 http://deb.debian.org/debian trixie/main amd64 libwayland-server0 amd64 1.23.0-1+b1 [34.2 kB] Get:175 http://deb.debian.org/debian trixie/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get:176 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:177 http://deb.debian.org/debian trixie/main amd64 libglapi-mesa amd64 24.2.8-1 [38.0 kB] Get:178 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:179 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:180 http://deb.debian.org/debian trixie/main amd64 libllvm19 amd64 1:19.1.4-1 [26.0 MB] Get:181 http://deb.debian.org/debian trixie/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get:182 http://deb.debian.org/debian trixie/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB] Get:183 http://deb.debian.org/debian trixie/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [241 kB] Get:184 http://deb.debian.org/debian trixie/main amd64 libxcb-dri2-0 amd64 1.17.0-2+b1 [107 kB] Get:185 http://deb.debian.org/debian trixie/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get:186 http://deb.debian.org/debian trixie/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get:187 http://deb.debian.org/debian trixie/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get:188 http://deb.debian.org/debian trixie/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get:189 http://deb.debian.org/debian trixie/main amd64 libxshmfence1 amd64 1.3-1+b2 [8848 B] Get:190 http://deb.debian.org/debian trixie/main amd64 mesa-libgallium amd64 24.2.8-1 [9185 kB] Get:191 http://deb.debian.org/debian trixie/main amd64 libgbm1 amd64 24.2.8-1 [42.8 kB] Get:192 http://deb.debian.org/debian trixie/main amd64 libwayland-client0 amd64 1.23.0-1+b1 [26.6 kB] Get:193 http://deb.debian.org/debian trixie/main amd64 libegl-mesa0 amd64 24.2.8-1 [133 kB] Get:194 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:195 http://deb.debian.org/debian trixie/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:196 http://deb.debian.org/debian trixie/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:197 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get:198 http://deb.debian.org/debian trixie/main amd64 libfile-desktopentry-perl all 0.22-3 [17.6 kB] Get:199 http://deb.debian.org/debian trixie/main amd64 libfile-fcntllock-perl amd64 0.22-4+b4 [34.6 kB] Get:200 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:201 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:202 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:203 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-3 [1501 kB] Get:204 http://deb.debian.org/debian trixie/main amd64 shared-mime-info amd64 2.4-5+b1 [759 kB] Get:205 http://deb.debian.org/debian trixie/main amd64 libfile-mimeinfo-perl all 0.35-1 [44.4 kB] Get:206 http://deb.debian.org/debian trixie/main amd64 libfont-afm-perl all 1.20-4 [13.1 kB] Get:207 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get:208 http://deb.debian.org/debian trixie/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get:209 http://deb.debian.org/debian trixie/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get:210 http://deb.debian.org/debian trixie/main amd64 libxfixes3 amd64 1:6.0.0-2+b2 [20.3 kB] Get:211 http://deb.debian.org/debian trixie/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b3 [19.3 kB] Get:212 http://deb.debian.org/debian trixie/main amd64 libvulkan1 amd64 1.3.296.0-1 [126 kB] Get:213 http://deb.debian.org/debian trixie/main amd64 libgl1-mesa-dri amd64 24.2.8-1 [43.9 kB] Get:214 http://deb.debian.org/debian trixie/main amd64 libglx-mesa0 amd64 24.2.8-1 [154 kB] Get:215 http://deb.debian.org/debian trixie/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get:216 http://deb.debian.org/debian trixie/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get:217 http://deb.debian.org/debian trixie/main amd64 libgles2 amd64 1.7.0-1+b2 [17.3 kB] Get:218 http://deb.debian.org/debian trixie/main amd64 libglib2.0-data all 2.82.2-3 [1275 kB] Get:219 http://deb.debian.org/debian trixie/main amd64 libgpm2 amd64 1.20.7-11+b1 [14.4 kB] Get:220 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:221 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get:222 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:223 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB] Get:224 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:225 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:226 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:227 http://deb.debian.org/debian trixie/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:228 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:229 http://deb.debian.org/debian trixie/main amd64 libhtml-format-perl all 2.16-2 [38.8 kB] Get:230 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get:231 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get:232 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:233 http://deb.debian.org/debian trixie/main amd64 libhttp-daemon-perl all 6.16-1 [23.5 kB] Get:234 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:235 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:236 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB] Get:237 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:238 http://deb.debian.org/debian trixie/main amd64 libio-compress-brotli-perl amd64 0.004001-2+b3 [16.9 kB] Get:239 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:240 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-2 [339 kB] Get:241 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:242 http://deb.debian.org/debian trixie/main amd64 libio-stringy-perl all 2.113-2 [48.3 kB] Get:243 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:244 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get:245 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get:246 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get:247 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:248 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:249 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get:250 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get:251 http://deb.debian.org/debian trixie/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB] Get:252 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get:253 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:254 http://deb.debian.org/debian trixie/main amd64 libldap-common all 2.5.18+dfsg-3 [32.0 kB] Get:255 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:256 http://deb.debian.org/debian trixie/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:257 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:258 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:259 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:260 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.77-1 [183 kB] Get:261 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:262 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get:263 http://deb.debian.org/debian trixie/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get:264 http://deb.debian.org/debian trixie/main amd64 libmailtools-perl all 2.22-1 [88.8 kB] Get:265 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB] Get:266 http://deb.debian.org/debian trixie/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB] Get:267 http://deb.debian.org/debian trixie/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB] Get:268 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get:269 http://deb.debian.org/debian trixie/main amd64 libncurses-dev amd64 6.5-2+b1 [351 kB] Get:270 http://deb.debian.org/debian trixie/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB] Get:271 http://deb.debian.org/debian trixie/main amd64 libxml-twig-perl all 1:3.52-3 [177 kB] Get:272 http://deb.debian.org/debian trixie/main amd64 libnet-dbus-perl amd64 1.2.0-2+b3 [168 kB] Get:273 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get:274 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:275 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:276 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.55.0+ds-3 [225 kB] Get:277 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.55.0+ds-3 [54.6 kB] Get:278 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.55.0+ds-3 [35.4 kB] Get:279 http://deb.debian.org/debian trixie/main amd64 libpaper1 amd64 1.1.29+b2 [12.8 kB] Get:280 http://deb.debian.org/debian trixie/main amd64 libpaper-utils amd64 1.1.29+b2 [9236 B] Get:281 http://deb.debian.org/debian trixie/main amd64 libpcre2-16-0 amd64 10.44-4 [261 kB] Get:282 http://deb.debian.org/debian trixie/main amd64 libpcre2-32-0 amd64 10.44-4 [248 kB] Get:283 http://deb.debian.org/debian trixie/main amd64 libpcre2-posix3 amd64 10.44-4 [60.3 kB] Get:284 http://deb.debian.org/debian trixie/main amd64 libpcre2-dev amd64 10.44-4 [790 kB] Get:285 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:286 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:287 http://deb.debian.org/debian trixie/main amd64 libpng-dev amd64 1.6.44-2 [366 kB] Get:288 http://deb.debian.org/debian trixie/main amd64 libpng-tools amd64 1.6.44-2 [129 kB] Get:289 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get:290 http://deb.debian.org/debian trixie/main amd64 libreadline-dev amd64 8.2-5 [153 kB] Get:291 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules amd64 2.1.28+dfsg1-8 [66.5 kB] Get:292 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get:293 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get:294 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get:295 http://deb.debian.org/debian trixie/main amd64 libtext-iconv-perl amd64 1.7-8+b4 [14.4 kB] Get:296 http://deb.debian.org/debian trixie/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB] Get:297 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get:298 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get:299 http://deb.debian.org/debian trixie/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3+b1 [190 kB] Get:300 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get:301 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get:302 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get:303 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get:304 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get:305 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get:306 http://deb.debian.org/debian trixie/main amd64 libx11-protocol-perl all 0.56-9 [120 kB] Get:307 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get:308 http://deb.debian.org/debian trixie/main amd64 libxmu6 amd64 2:1.1.3-3+b3 [58.8 kB] Get:309 http://deb.debian.org/debian trixie/main amd64 libxpm4 amd64 1:3.5.17-1+b2 [56.3 kB] Get:310 http://deb.debian.org/debian trixie/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get:311 http://deb.debian.org/debian trixie/main amd64 libxcb-shape0 amd64 1.17.0-2+b1 [106 kB] Get:312 http://deb.debian.org/debian trixie/main amd64 libxcomposite1 amd64 1:0.4.6-1 [16.3 kB] Get:313 http://deb.debian.org/debian trixie/main amd64 libxcursor1 amd64 1:1.2.2-1+b1 [37.6 kB] Get:314 http://deb.debian.org/debian trixie/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get:315 http://deb.debian.org/debian trixie/main amd64 libxinerama1 amd64 2:1.1.4-3+b2 [16.0 kB] Get:316 http://deb.debian.org/debian trixie/main amd64 libxkbfile1 amd64 1:1.1.0-1+b2 [76.5 kB] Get:317 http://deb.debian.org/debian trixie/main amd64 libxml-xpathengine-perl all 0.14-2 [33.5 kB] Get:318 http://deb.debian.org/debian trixie/main amd64 libxmuu1 amd64 2:1.1.3-3+b3 [21.9 kB] Get:319 http://deb.debian.org/debian trixie/main amd64 libxrandr2 amd64 2:1.5.4-1+b1 [36.3 kB] Get:320 http://deb.debian.org/debian trixie/main amd64 libxtst6 amd64 2:1.2.3-1.1+b2 [25.9 kB] Get:321 http://deb.debian.org/debian trixie/main amd64 libxv1 amd64 2:1.0.11-1.1+b2 [23.3 kB] Get:322 http://deb.debian.org/debian trixie/main amd64 libxxf86dga1 amd64 2:1.1.5-1+b2 [20.8 kB] Get:323 http://deb.debian.org/debian trixie/main amd64 luit amd64 2.0.20240910-1 [55.1 kB] Get:324 http://deb.debian.org/debian trixie/main amd64 manpages-dev all 6.9.1-1 [2122 kB] Get:325 http://deb.debian.org/debian trixie/main amd64 mesa-vulkan-drivers amd64 24.2.8-1 [13.5 MB] Get:326 http://deb.debian.org/debian trixie/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get:327 http://deb.debian.org/debian trixie/main amd64 ncbi-blast+ amd64 2.16.0+ds-6+b1 [15.2 MB] Get:328 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:329 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get:330 http://deb.debian.org/debian trixie/main amd64 publicsuffix all 20241025.1547-0.1 [287 kB] Get:331 http://deb.debian.org/debian trixie/main amd64 python-babel-localedata all 2.16.0-1 [5696 kB] Get:332 http://deb.debian.org/debian trixie/main amd64 python-biopython-doc all 1.84+dfsg-4 [18.2 MB] Get:333 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:334 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get:335 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:336 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get:337 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:338 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get:339 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:340 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get:341 http://deb.debian.org/debian trixie/main amd64 python3-babel all 2.16.0-1 [114 kB] Get:342 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get:343 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:344 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get:345 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.1-2+b1 [130 kB] Get:346 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get:347 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:348 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.2.5-1 [1117 kB] Get:349 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get:350 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:351 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.84+dfsg-4+b1 [1651 kB] Get:352 http://deb.debian.org/debian trixie/main amd64 python3-cffi-backend amd64 1.17.1-2+b1 [96.2 kB] Get:353 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:354 http://deb.debian.org/debian trixie/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB] Get:355 http://deb.debian.org/debian trixie/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get:356 http://deb.debian.org/debian trixie/main amd64 python3-olefile all 0.47-1 [39.3 kB] Get:357 http://deb.debian.org/debian trixie/main amd64 python3-tzlocal all 5.2-1.1 [23.7 kB] Get:358 http://deb.debian.org/debian trixie/main amd64 zip amd64 3.0-14 [233 kB] Get:359 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB] Get:360 http://deb.debian.org/debian trixie/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:361 http://deb.debian.org/debian trixie/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB] Get:362 http://deb.debian.org/debian trixie/main amd64 python3-rpy2 amd64 3.5.16-3+b1 [207 kB] Get:363 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.13.1-6 [20.2 MB] Get:364 http://deb.debian.org/debian trixie/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get:365 http://deb.debian.org/debian trixie/main amd64 r-base-dev all 4.4.2-1 [4516 B] Get:366 http://deb.debian.org/debian trixie/main amd64 r-cran-boot all 1.3-31-1 [639 kB] Get:367 http://deb.debian.org/debian trixie/main amd64 r-cran-mass amd64 7.3-61-1 [1112 kB] Get:368 http://deb.debian.org/debian trixie/main amd64 r-cran-class amd64 7.3-22-2 [87.3 kB] Get:369 http://deb.debian.org/debian trixie/main amd64 r-cran-cluster amd64 2.1.6-1 [568 kB] Get:370 http://deb.debian.org/debian trixie/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:371 http://deb.debian.org/debian trixie/main amd64 r-cran-foreign amd64 0.8.87-1 [253 kB] Get:372 http://deb.debian.org/debian trixie/main amd64 r-cran-kernsmooth amd64 2.23-24-1 [92.7 kB] Get:373 http://deb.debian.org/debian trixie/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB] Get:374 http://deb.debian.org/debian trixie/main amd64 r-cran-matrix amd64 1.7-1-1 [4138 kB] Get:375 http://deb.debian.org/debian trixie/main amd64 r-cran-nlme amd64 3.1.166-1 [2330 kB] Get:376 http://deb.debian.org/debian trixie/main amd64 r-cran-mgcv amd64 1.9-1-1 [3233 kB] Get:377 http://deb.debian.org/debian trixie/main amd64 r-cran-nnet amd64 7.3-19-2 [111 kB] Get:378 http://deb.debian.org/debian trixie/main amd64 r-cran-survival amd64 3.7-0-1 [6305 kB] Get:379 http://deb.debian.org/debian trixie/main amd64 r-cran-rpart amd64 4.1.23-1 [685 kB] Get:380 http://deb.debian.org/debian trixie/main amd64 r-cran-spatial amd64 7.3-17-1 [128 kB] Get:381 http://deb.debian.org/debian trixie/main amd64 r-doc-html all 4.4.2-1 [582 kB] Get:382 http://deb.debian.org/debian trixie/main amd64 r-recommended all 4.4.2-1 [2572 B] Get:383 http://deb.debian.org/debian trixie/main amd64 samtools amd64 1.20-3 [653 kB] Get:384 http://deb.debian.org/debian trixie/main amd64 srst2 amd64 0.2.0-13 [61.3 kB] Get:385 http://deb.debian.org/debian trixie/main amd64 x11-utils amd64 7.7+7 [182 kB] Get:386 http://deb.debian.org/debian trixie/main amd64 x11-xserver-utils amd64 7.7+10+b1 [163 kB] Get:387 http://deb.debian.org/debian trixie/main amd64 xdg-user-dirs amd64 0.18-1 [54.4 kB] Get:388 http://deb.debian.org/debian trixie/main amd64 libegl1 amd64 1.7.0-1+b2 [34.6 kB] Get:389 http://deb.debian.org/debian trixie/main amd64 zutty amd64 0.16.2.20241020+dfsg1-1 [182 kB] Get:390 http://deb.debian.org/debian trixie/main amd64 gnupg-utils amd64 2.2.45-2 [506 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 370 MB in 2s (158 MB/s) Selecting previously unselected package libdbus-1-3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5146 files and directories currently installed.) Preparing to unpack .../0-libdbus-1-3_1.14.10-6_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.14.10-6) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../1-dbus-bin_1.14.10-6_amd64.deb ... Unpacking dbus-bin (1.14.10-6) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../2-dbus-session-bus-common_1.14.10-6_all.deb ... 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Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libmbedcrypto16:amd64 (3.6.2-3) ... Setting up libxkbfile1:amd64 (1:1.1.0-1+b2) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtsan2:amd64 (14.2.0-8) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.43.50.20241204-2) ... Setting up dbus-system-bus-common (1.14.10-6) ... Setting up libisl23:amd64 (0.27-1) ... Setting up libc-dev-bin (2.40-4) ... Setting up openssl (3.3.2-2) ... Setting up libwebpmux3:amd64 (1.4.0-0.1+b1) ... Setting up libdeflate-dev:amd64 (1.22-1) ... Setting up libdrm-common (2.4.123-1) ... Setting up libxcomposite1:amd64 (1:0.4.6-1) ... Setting up readline-common (8.2-5) ... Setting up publicsuffix (20241025.1547-0.1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libcc1-0:amd64 (14.2.0-8) ... Setting up libxmuu1:amd64 (2:1.1.3-3+b3) ... Setting up dbus-bin (1.14.10-6) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up liblsan0:amd64 (14.2.0-8) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libblas-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libitm1:amd64 (14.2.0-8) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libwayland-client0:amd64 (1.23.0-1+b1) ... Setting up libctf0:amd64 (2.43.50.20241204-2) ... Setting up pinentry-curses (1.2.1-4+b1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Setting up libllvm19:amd64 (1:19.1.4-1) ... Setting up manpages-dev (6.9.1-1) ... Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxpm4:amd64 (1:3.5.17-1+b2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up libpng-tools (1.6.44-2) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up dbus-daemon (1.14.10-6) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b3) ... Setting up libperl5.40:amd64 (5.40.0-8) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up perl (5.40.0-8) ... Setting up libglib2.0-0t64:amd64 (2.82.2-3) ... No schema files found: doing nothing. Setting up libgprofng0:amd64 (2.43.50.20241204-2) ... Setting up libmbedx509-7:amd64 (3.6.2-3) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libdata-dump-perl (1.25-1) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b2) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libxml-xpathengine-perl (0.14-2) ... Setting up dbus (1.14.10-6) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libio-compress-brotli-perl (0.004001-2+b3) ... Setting up shared-mime-info (2.4-5+b1) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b2) ... Setting up libxv1:amd64 (2:1.0.11-1.1+b2) ... Setting up liblapack-dev:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libio-html-perl (1.004-3) ... Setting up libxrandr2:amd64 (2:1.5.4-1+b1) ... Setting up cpp-14-x86-64-linux-gnu (14.2.0-8) ... Setting up ucf (3.0043+nmu1) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libdpkg-perl (1.22.11) ... Setting up cpp-14 (14.2.0-8) ... Setting up libmbedtls21:amd64 (3.6.2-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up xauth (1:1.1.2-1) ... Setting up python-biopython-doc (1.84+dfsg-4) ... Setting up xml-core (0.19) ... Setting up gpgconf (2.2.45-2) ... Setting up libc6-dev:amd64 (2.40-4) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libgcc-14-dev:amd64 (14.2.0-8) ... Setting up libstdc++-14-dev:amd64 (14.2.0-8) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up libicu-dev:amd64 (72.1-5+b1) ... Setting up liburi-perl (5.30-1) ... Setting up libx11-protocol-perl (0.56-9) ... Setting up gpg (2.2.45-2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up gnupg-utils (2.2.45-2) ... Setting up binutils-x86-64-linux-gnu (2.43.50.20241204-2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up libnet-ssleay-perl:amd64 (1.94-2) ... Setting up cpp-x86-64-linux-gnu (4:14.2.0-1) ... Setting up cd-hit (4.8.1-4) ... Setting up libgfortran-14-dev:amd64 (14.2.0-8) ... Setting up libpaper1:amd64 (1.1.29+b2) ... Creating config file /etc/papersize with new version Setting up libhttp-date-perl (6.06-1) ... Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b2) ... Setting up libncurses-dev:amd64 (6.5-2+b1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libtie-ixhash-perl (1.23-4) ... Setting up gpg-agent (2.2.45-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libpcre2-dev:amd64 (10.44-4) ... Setting up libxi6:amd64 (2:1.8.2-1) ... Setting up libfont-afm-perl (1.20-4) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libfile-fcntllock-perl (0.22-4+b4) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libdrm-radeon1:amd64 (2.4.123-1) ... Setting up libio-stringy-perl (2.113-2) ... Setting up libxtst6:amd64 (2:1.2.3-1.1+b2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libauthen-sasl-perl (2.1700-1) ... Setting up libtk8.6:amd64 (8.6.15-1) ... Setting up libxcursor1:amd64 (1:1.2.2-1+b1) ... Setting up gpgsm (2.2.45-2) ... Setting up libpango-1.0-0:amd64 (1.55.0+ds-3) ... Setting up libdrm-intel1:amd64 (2.4.123-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libxxf86dga1:amd64 (2:1.1.5-1+b2) ... Setting up libcurl3t64-gnutls:amd64 (8.11.0-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up binutils (2.43.50.20241204-2) ... Setting up libpaper-utils (1.1.29+b2) ... Setting up libreadline-dev:amd64 (8.2-5) ... Setting up xfonts-utils (1:7.7+7) ... Setting up libcairo2:amd64 (1.18.2-2) ... Setting up dpkg-dev (1.22.11) ... Setting up dirmngr (2.2.45-2) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3+b1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3+b1) ... Setting up libraqm0:amd64 (0.10.1-1+b2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Setting up libfile-desktopentry-perl (0.22-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up cpp (4:14.2.0-1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up gnupg (2.2.45-2) ... Setting up libhts3t64:amd64 (1.20+ds-2) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-8) ... Setting up libpangoft2-1.0-0:amd64 (1.55.0+ds-3) ... Setting up libalgorithm-diff-xs-perl:amd64 (0.04-8+b4) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libpangocairo-1.0-0:amd64 (1.55.0+ds-3) ... Setting up libalgorithm-merge-perl (0.08-5) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libfile-mimeinfo-perl (0.35-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up mesa-libgallium:amd64 (24.2.8-1) ... Setting up libxmu6:amd64 (2:1.1.3-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-1) ... Setting up gcc-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gpg-wks-client (2.2.45-2) ... Setting up libgbm1:amd64 (24.2.8-1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up python3.12 (3.12.8-1) ... Setting up libgl1-mesa-dri:amd64 (24.2.8-1) ... Setting up libpng-dev:amd64 (1.6.44-2) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Setting up libhtml-format-perl (2.16-2) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up x11-xserver-utils (7.7+10+b1) ... Setting up gcc-14 (14.2.0-8) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-8) ... Setting up samtools (1.20-3) ... Setting up libegl-mesa0:amd64 (24.2.8-1) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up libmailtools-perl (2.22-1) ... Setting up r-base-core (4.4.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.22-6-1) ... Setting up r-cran-nlme (3.1.166-1) ... Setting up g++-14-x86-64-linux-gnu (14.2.0-8) ... Setting up libhttp-daemon-perl (6.16-1) ... Setting up r-cran-cluster (2.1.6-1) ... Setting up libegl1:amd64 (1.7.0-1+b2) ... Setting up g++-x86-64-linux-gnu (4:14.2.0-1) ... Setting up r-cran-nnet (7.3-19-2) ... Setting up g++-14 (14.2.0-8) ... Setting up gfortran-14 (14.2.0-8) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-cran-boot (1.3-31-1) ... Setting up libglx-mesa0:amd64 (24.2.8-1) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up r-cran-spatial (7.3-17-1) ... Setting up r-cran-mass (7.3-61-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up r-cran-foreign (0.8.87-1) ... Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gcc (4:14.2.0-1) ... Setting up bowtie2 (2.5.4-1) ... Setting up ncbi-blast+ (2.16.0+ds-6+b1) ... Setting up python3-pil:amd64 (10.4.0-1+b1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-cran-kernsmooth (2.23-24-1) ... Setting up zutty (0.16.2.20241020+dfsg1-1) ... update-alternatives: using /usr/bin/zutty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode Setting up r-cran-mgcv (1.9-1-1) ... Setting up g++ (4:14.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up x11-utils (7.7+7) ... Setting up build-essential (12.12) ... Setting up python3-tzlocal (5.2-1.1) ... Setting up python3-cffi-backend:amd64 (1.17.1-2+b1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up mesa-vulkan-drivers:amd64 (24.2.8-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up r-cran-class (7.3-22-2) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-olefile (0.47-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up r-cran-survival (3.7-0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up r-base-dev (4.4.2-1) ... Setting up python3-babel (2.16.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up r-cran-rpart (4.1.23-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-rpy2 (3.5.16-3+b1) ... Setting up r-recommended (4.4.2-1) ... Setting up python3-scipy (1.13.1-6) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libnet-dbus-perl (1.2.0-2+b3) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Setting up srst2 (0.2.0-13) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-get', '-y', 'install', 'srst2=0.2.0-13'] 1m39.3s INFO: Running scripts post_install 1m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_install_exceptions'] 1m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_install_exceptions'] 1m39.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt'] 1m41.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt'] 1m44.6s DEBUG: No broken symlinks as far as we can find. 1m46.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', '-ac', '--ignore-obsolete'] 1m50.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', '-ac', '--ignore-obsolete'] 1m50.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m50.8s DUMP: 0.15.6 1m50.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m50.8s INFO: Running adequate version 0.15.6 now. 1m50.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'srst2'] 1m50.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'srst2'] 1m50.9s INFO: Running scripts pre_remove 1m50.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_remove_exceptions'] 2m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/pre_remove_exceptions'] 2m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m2.0s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.9.16 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed binutils binutils 2.43.50.20241204-2 install ok installed binutils-common:amd64 binutils-common 2.43.50.20241204-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.43.50.20241204-2 install ok installed bowtie2 bowtie2 2.5.4-1 install ok installed bsdutils bsdutils 1:2.40.2-11 install ok installed build-essential build-essential 12.12 install ok installed bzip2 bzip2 1.0.8-6 install ok installed bzip2-doc bzip2-doc 1.0.8-6 install ok installed ca-certificates ca-certificates 20240203 install ok installed cd-hit cd-hit 4.8.1-4 install ok installed coreutils coreutils 9.5-1+b1 install ok installed cpp cpp 4:14.2.0-1 install ok installed cpp-14 cpp-14 14.2.0-8 install ok installed cpp-14-x86-64-linux-gnu cpp-14-x86-64-linux-gnu 14.2.0-8 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:14.2.0-1 install ok installed dash dash 0.5.12-9 install ok installed dbus dbus 1.14.10-6 install ok installed dbus-bin dbus-bin 1.14.10-6 install ok installed dbus-daemon dbus-daemon 1.14.10-6 install ok installed dbus-session-bus-common dbus-session-bus-common 1.14.10-6 install ok installed dbus-system-bus-common dbus-system-bus-common 1.14.10-6 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-1 install ok installed dirmngr dirmngr 2.2.45-2 install ok installed dpkg dpkg 1.22.11 install ok installed dpkg-dev dpkg-dev 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.2~rc1-2 install ok installed fakeroot fakeroot 1.36-1 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig fontconfig 2.15.0-1.1+b1 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1+b1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed g++ g++ 4:14.2.0-1 install ok installed g++-14 g++-14 14.2.0-8 install ok installed g++-14-x86-64-linux-gnu g++-14-x86-64-linux-gnu 14.2.0-8 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:14.2.0-1 install ok installed gcc gcc 4:14.2.0-1 install ok installed gcc-14 gcc-14 14.2.0-8 install ok installed 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libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1700-1 install ok installed libbinutils:amd64 libbinutils 2.43.50.20241204-2 install ok installed libblas-dev:amd64 libblas-dev 3.12.0-4 install ok installed libblas3:amd64 libblas3 3.12.0-4 install ok installed libblkid1:amd64 libblkid1 2.40.2-11 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b6 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.8-6 install ok installed libc-bin libc-bin 2.40-4 install ok installed libc-dev-bin libc-dev-bin 2.40-4 install ok installed libc6:amd64 libc6 2.40-4 install ok installed libc6-dev:amd64 libc6-dev 2.40-4 install ok installed libcairo2:amd64 libcairo2 1.18.2-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcc1-0:amd64 libcc1-0 14.2.0-8 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libfile-desktopentry-perl 0.22-3 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-4+b4 install ok installed libfile-listing-perl libfile-listing-perl 6.16-1 install ok installed libfile-mimeinfo-perl libfile-mimeinfo-perl 0.35-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-4 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1+b1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1+b1 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.15-1 install ok installed libgbm1:amd64 libgbm1 24.2.8-1 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.2.0-8 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.24-2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.24-2 install ok installed libgfortran-14-dev:amd64 libgfortran-14-dev 14.2.0-8 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-8 install ok installed libgl1:amd64 libgl1 1.7.0-1+b2 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 24.2.8-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 24.2.8-1 install ok installed libgles2:amd64 libgles2 1.7.0-1+b2 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.82.2-3 install ok installed libglib2.0-data libglib2.0-data 2.82.2-3 install ok installed libglvnd0:amd64 libglvnd0 1.7.0-1+b2 install ok installed libglx-mesa0:amd64 libglx-mesa0 24.2.8-1 install ok installed libglx0:amd64 libglx0 1.7.0-1+b2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-8 install ok installed libgpg-error0:amd64 libgpg-error0 1.51-2 install ok installed libgpm2:amd64 libgpm2 1.20.7-11+b1 install ok installed libgprofng0:amd64 libgprofng0 2.43.50.20241204-2 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libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg-dev:amd64 libjpeg-dev 1:2.1.5-3+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3+b1 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:2.1.5-3+b1 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 7.4.7-4 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-3 install ok installed libksba8:amd64 libksba8 1.6.7-2+b1 install ok installed liblapack-dev:amd64 liblapack-dev 3.12.0-4 install ok installed liblapack3:amd64 liblapack3 3.12.0-4 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b2 install ok installed liblcms2-2:amd64 liblcms2-2 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libmbedx509-7:amd64 libmbedx509-7 3.6.2-3 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-11 install ok installed libmpc3:amd64 libmpc3 1.3.1-1+b3 install ok installed libmpfr6:amd64 libmpfr6 4.2.1-1+b2 install ok installed libncurses-dev:amd64 libncurses-dev 6.5-2+b1 install ok installed libncurses6:amd64 libncurses6 6.5-2+b1 install ok installed libncursesw6:amd64 libncursesw6 6.5-2+b1 install ok installed libnet-dbus-perl libnet-dbus-perl 1.2.0-2+b3 install ok installed libnet-http-perl libnet-http-perl 6.23-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-2 install ok installed libnet-ssleay-perl:amd64 libnet-ssleay-perl 1.94-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.6.0-2 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.9.1-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.9.1-1 install ok installed libnpth0t64:amd64 libnpth0t64 1.6-3.1+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b3 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b4 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.55.0+ds-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.55.0+ds-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.55.0+ds-3 install ok installed libpaper-utils libpaper-utils 1.1.29+b2 install ok installed libpaper1:amd64 libpaper1 1.1.29+b2 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3+b2 install ok installed libpcre2-16-0:amd64 libpcre2-16-0 10.44-4 install ok installed libpcre2-32-0:amd64 libpcre2-32-0 10.44-4 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-4 install ok installed libpcre2-dev:amd64 libpcre2-dev 10.44-4 install ok installed libpcre2-posix3:amd64 libpcre2-posix3 10.44-4 install ok installed libperl5.40:amd64 libperl5.40 5.40.0-8 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpkgconf3:amd64 libpkgconf3 1.8.1-4 install ok installed libpng-dev:amd64 libpng-dev 1.6.44-2 install ok installed libpng-tools libpng-tools 1.6.44-2 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.44-2 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.12.6-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.8-1 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.8-1 install ok installed libquadmath0:amd64 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install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-5 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.4+ds-1.3+b1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3+b1 install ok installed libtk8.6:amd64 libtk8.6 8.6.15-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.32-1 install ok installed libtsan2:amd64 libtsan2 14.2.0-8 install ok installed libubsan1:amd64 libubsan1 14.2.0-8 install ok installed libudev1:amd64 libudev1 257~rc3-1 install ok installed libunistring5:amd64 libunistring5 1.2-1+b1 install ok installed liburi-perl liburi-perl 5.30-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-11 install ok installed libuv1t64:amd64 libuv1t64 1.48.0-7 install ok installed libvulkan1:amd64 libvulkan1 1.3.296.0-1 install ok installed libwayland-client0:amd64 libwayland-client0 1.23.0-1+b1 install ok installed libwayland-server0:amd64 libwayland-server0 1.23.0-1+b1 install ok installed libwebp7:amd64 libwebp7 1.4.0-0.1+b1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.4.0-0.1+b1 install ok installed libwebpmux3:amd64 libwebpmux3 1.4.0-0.1+b1 install ok installed libwww-perl libwww-perl 6.77-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.8.10-2 install ok installed libx11-data libx11-data 2:1.8.10-2 install ok installed libx11-protocol-perl libx11-protocol-perl 0.56-9 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.10-2 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.16-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.17.0-2+b1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.17.0-2+b1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.17.0-2+b1 install ok installed libxcb-present0:amd64 libxcb-present0 1.17.0-2+b1 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.17.0-2+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.17.0-2+b1 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.6-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.2-1+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2+b2 install ok installed libxft2:amd64 libxft2 2.3.6-1+b2 install ok installed libxi6:amd64 libxi6 2:1.8.2-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3+b2 install ok installed libxkbfile1:amd64 libxkbfile1 1:1.1.0-1+b2 install ok installed libxml-parser-perl libxml-parser-perl 2.47-1+b3 install ok installed libxml-twig-perl libxml-twig-perl 1:3.52-3 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-2 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.2+b1 install ok installed libxmu6:amd64 libxmu6 2:1.1.3-3+b3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.3-3+b3 install ok installed libxpm4:amd64 libxpm4 1:3.5.17-1+b2 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.4-1+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1+b2 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1+b2 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b2 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2+b1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1.1+b2 install ok installed libxv1:amd64 libxv1 2:1.0.11-1.1+b2 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.5-1+b2 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b3 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libz3-4:amd64 libz3-4 4.13.3-1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed linux-libc-dev linux-libc-dev 6.11.10-1 install ok installed login login 1:4.16.0-2+really2.40.2-11 install ok installed login.defs login.defs 1:4.16.0-5 install ok installed logsave logsave 1.47.2~rc1-2 install ok installed luit luit 2.0.20240910-1 install ok installed make make 4.3-4.1 install ok installed manpages manpages 6.9.1-1 install ok installed manpages-dev manpages-dev 6.9.1-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed media-types media-types 10.1.0 install ok installed mesa-libgallium:amd64 mesa-libgallium 24.2.8-1 install ok installed mesa-vulkan-drivers:amd64 mesa-vulkan-drivers 24.2.8-1 install ok installed mount mount 2.40.2-11 install ok installed ncbi-blast+ ncbi-blast+ 2.16.0+ds-6+b1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-5 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.3.2-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-5 install ok installed patch patch 2.7.6-7 install ok installed perl perl 5.40.0-8 install ok installed perl-base perl-base 5.40.0-8 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.0-8 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 7+b2 install ok installed pinentry-curses pinentry-curses 1.2.1-4+b1 install ok installed pkgconf:amd64 pkgconf 1.8.1-4 install ok installed pkgconf-bin pkgconf-bin 1.8.1-4 install ok installed publicsuffix publicsuffix 20241025.1547-0.1 install ok installed python-babel-localedata python-babel-localedata 2.16.0-1 install ok installed python-biopython-doc python-biopython-doc 1.84+dfsg-4 install ok installed python3 python3 3.12.6-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-babel python3-babel 2.16.0-1 install ok installed python3-biopython python3-biopython 1.84+dfsg-4+b1 install ok installed python3-cairo python3-cairo 1.26.1-2+b1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.17.1-2+b1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-freetype python3-freetype 2.5.1-1 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.0-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jinja2 python3-jinja2 3.1.3-1 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1+b2 install ok installed python3-minimal python3-minimal 3.12.6-1 install ok installed python3-more-itertools python3-more-itertools 10.5.0-1 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-12 install ok installed python3-olefile python3-olefile 0.47-1 install ok installed python3-pil:amd64 python3-pil 10.4.0-1+b1 install ok installed python3-pkg-resources python3-pkg-resources 75.2.0-1 install ok installed python3-reportlab python3-reportlab 4.2.5-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-rpy2 python3-rpy2 3.5.16-3+b1 install ok installed python3-scipy python3-scipy 1.13.1-6 install ok installed python3-typeguard python3-typeguard 4.4.1-1 install ok installed python3-typing-extensions python3-typing-extensions 4.12.2-2 install ok installed python3-tzlocal python3-tzlocal 5.2-1.1 install ok installed python3.12 python3.12 3.12.8-1 install ok installed python3.12-minimal python3.12-minimal 3.12.8-1 install ok installed r-base-core r-base-core 4.4.2-1 install ok installed r-base-dev r-base-dev 4.4.2-1 install ok installed r-cran-boot r-cran-boot 1.3-31-1 install ok installed r-cran-class r-cran-class 7.3-22-2 install ok installed r-cran-cluster r-cran-cluster 2.1.6-1 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-foreign r-cran-foreign 0.8.87-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-24-1 install ok installed r-cran-lattice r-cran-lattice 0.22-6-1 install ok installed r-cran-mass r-cran-mass 7.3-61-1 install ok installed r-cran-matrix r-cran-matrix 1.7-1-1 install ok installed r-cran-mgcv r-cran-mgcv 1.9-1-1 install ok installed r-cran-nlme r-cran-nlme 3.1.166-1 install ok installed r-cran-nnet r-cran-nnet 7.3-19-2 install ok installed r-cran-rpart r-cran-rpart 4.1.23-1 install ok installed r-cran-spatial r-cran-spatial 7.3-17-1 install ok installed r-cran-survival r-cran-survival 3.7-0-1 install ok installed r-doc-html r-doc-html 4.4.2-1 install ok installed r-recommended r-recommended 4.4.2-1 install ok installed readline-common readline-common 8.2-5 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed samtools samtools 1.20-3 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sgml-base sgml-base 1.31 install ok installed shared-mime-info shared-mime-info 2.4-5+b1 install ok installed srst2 srst2 0.2.0-13 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-4 install ok installed ucf ucf 3.0043+nmu1 install ok installed unzip unzip 6.0-28 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-11 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23.1 install ok installed x11-utils x11-utils 7.7+7 install ok installed x11-xserver-utils x11-xserver-utils 7.7+10+b1 install ok installed xauth xauth 1:1.1.2-1 install ok installed xdg-user-dirs xdg-user-dirs 0.18-1 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+7 install ok installed xml-core xml-core 0.19 install ok installed xz-utils xz-utils 5.6.3-1+b1 install ok installed zip zip 3.0-14 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zutty zutty 0.16.2.20241020+dfsg1-1 2m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-get', 'remove', 'adduser', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bowtie2', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cd-hit', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'g++-', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gfortran', 'gfortran-14', 'gfortran-14-x86-64-linux-gnu', 'gfortran-x86-64-linux-gnu', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpgconf', 'gpgsm', 'icu-devtools', 'javascript-common', 'krb5-locales', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-merge-perl', 'libapparmor1:amd64', 'libasan8:amd64', 'libassuan9:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libclone-perl:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfakeroot:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran-14-dev:amd64', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libgles2:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmailtools-perl', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnpth0t64:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix3:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'liburi-perl', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'luit', 'make', 'manpages', 'manpages-dev', 'media-types', 'mesa-libgallium:amd64', 'mesa-vulkan-drivers:amd64', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkgconf:amd64', 'pkgconf-bin', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python3', 'python3-autocommand', 'python3-babel', 'python3-biopython', 'python3-cairo', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-decorator', 'python3-freetype', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jinja2', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-reportlab', 'python3-rlpycairo', 'python3-rpy2', 'python3-scipy', 'python3-typeguard', 'python3-typing-extensions', 'python3-tzlocal', 'python3.12', 'python3.12-minimal', 'r-base-core', 'r-base-dev', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'rpcsvc-proto', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'ucf', 'unzip', 'w3c-sgml-lib', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'zutty', 'srst2'] 2m49.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser binutils binutils-common binutils-x86-64-linux-gnu bowtie2 build-essential bzip2 bzip2-doc ca-certificates cd-hit cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dirmngr dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm icu-devtools javascript-common krb5-locales libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libapparmor1 libasan8 libassuan9 libatomic1 libauthen-sasl-perl libbinutils libblas-dev libblas3 libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libclone-perl libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdata-dump-perl libdatrie1 libdbus-1-3 libdeflate-dev libdeflate0 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1t64 libencode-locale-perl libexpat1 libfakeroot libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgbm1 libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libgfortran-14-dev libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libgles2 libglib2.0-0t64 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwasan0 libice6 libicu-dev libicu72 libimagequant0 libio-compress-brotli-perl libio-html-perl libio-socket-ssl-perl libio-stringy-perl libipc-system-simple-perl libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack-dev liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 libllvm19 liblmdb0 liblocale-gettext-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnsl2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libperl5.40 libpixman-1-0 libpkgconf3 libpng-dev libpng-tools libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libquadmath0 libraqm0 libreadline-dev libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsframe1 libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-14-dev libtcl8.6 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtry-tiny-perl libtsan2 libubsan1 liburi-perl libuv1t64 libvulkan1 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6t64 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libz3-4 linux-libc-dev luit make manpages manpages-dev media-types mesa-libgallium mesa-vulkan-drivers ncbi-blast+ ncbi-data netbase openssl patch perl perl-modules-5.40 perl-openssl-defaults pinentry-curses pkgconf pkgconf-bin publicsuffix python-babel-localedata python-biopython-doc python3 python3-autocommand python3-babel python3-biopython python3-cairo python3-cffi-backend python3-chardet python3-decorator python3-freetype python3-inflect python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-markupsafe python3-minimal python3-more-itertools python3-numpy python3-olefile python3-pil python3-pkg-resources python3-reportlab python3-rlpycairo python3-rpy2 python3-scipy python3-typeguard python3-typing-extensions python3-tzlocal python3.12 python3.12-minimal r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common rpcsvc-proto samtools sensible-utils sgml-base shared-mime-info srst2 ucf unzip w3c-sgml-lib x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xml-core xz-utils zip zlib1g-dev zutty 0 upgraded, 0 newly installed, 390 to remove and 0 not upgraded. After this operation, 1395 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 33525 files and directories currently installed.) Removing gnupg (2.2.45-2) ... Removing gpg-wks-client (2.2.45-2) ... Removing dirmngr (2.2.45-2) ... Removing dbus (1.14.10-6) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing dbus-system-bus-common (1.14.10-6) ... Removing adduser (3.137) ... Removing r-base-dev (4.4.2-1) ... Removing build-essential (12.12) ... Removing g++ (4:14.2.0-1) ... Removing gfortran (4:14.2.0-1) ... Removing gcc (4:14.2.0-1) ... Removing dpkg-dev (1.22.11) ... Removing g++-x86-64-linux-gnu (4:14.2.0-1) ... Removing gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Removing gcc-x86-64-linux-gnu (4:14.2.0-1) ... Removing g++-14 (14.2.0-8) ... Removing g++-14-x86-64-linux-gnu (14.2.0-8) ... Removing srst2 (0.2.0-13) ... Removing bowtie2 (2.5.4-1) ... Removing bzip2 (1.0.8-6) ... Removing bzip2-doc (1.0.8-6) ... Removing r-recommended (4.4.2-1) ... Removing r-cran-rpart (4.1.23-1) ... Removing r-cran-survival (3.7-0-1) ... Removing r-cran-mgcv (1.9-1-1) ... Removing r-cran-matrix (1.7-1-1) ... Removing r-cran-spatial (7.3-17-1) ... Removing python3-rpy2 (3.5.16-3+b1) ... Removing r-cran-nnet (7.3-19-2) ... Removing libnet-dbus-perl (1.2.0-2+b3) ... Removing libxml-twig-perl (1:3.52-3) ... Removing libxml-parser-perl (2.47-1+b3) ... Removing cd-hit (4.8.1-4) ... Removing x11-xserver-utils (7.7+10+b1) ... Removing cpp (4:14.2.0-1) ... Removing cpp-x86-64-linux-gnu (4:14.2.0-1) ... Removing dbus-daemon (1.14.10-6) ... Removing dbus-bin (1.14.10-6) ... Removing dbus-session-bus-common (1.14.10-6) ... Removing fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing x11-utils (7.7+7) ... Removing python3-biopython (1.84+dfsg-4+b1) ... Removing python3-reportlab (4.2.5-1) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo (1.26.1-2+b1) ... Removing fonts-dejavu-extra (2.37-8) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing gfortran-14 (14.2.0-8) ... Removing gfortran-14-x86-64-linux-gnu (14.2.0-8) ... Removing gnupg-l10n (2.2.45-2) ... Removing gnupg-utils (2.2.45-2) ... Removing gpg (2.2.45-2) ... Removing gpg-agent (2.2.45-2) ... Removing gpgsm (2.2.45-2) ... Removing gpgconf (2.2.45-2) ... Removing libicu-dev:amd64 (72.1-5+b1) ... Removing icu-devtools (72.1-5+b1) ... Removing javascript-common (11+nmu1) ... Removing krb5-locales (1.21.3-3) ... Removing libalgorithm-merge-perl (0.08-5) ... Removing libalgorithm-diff-xs-perl:amd64 (0.04-8+b4) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libapparmor1:amd64 (3.1.7-1+b3) ... Removing libstdc++-14-dev:amd64 (14.2.0-8) ... Removing libgfortran-14-dev:amd64 (14.2.0-8) ... Removing pinentry-curses (1.2.1-4+b1) ... Removing libassuan9:amd64 (3.0.1-2) ... Removing libfile-mimeinfo-perl (0.35-1) ... Removing shared-mime-info (2.4-5+b1) ... Removing python3-pil:amd64 (10.4.0-1+b1) ... Removing libraqm0:amd64 (0.10.1-1+b2) ... Removing libauthen-sasl-perl (2.1700-1) ... Removing liblapack-dev:amd64 (3.12.0-4) ... Removing libblas-dev:amd64 (3.12.0-4) ... Removing python3-scipy (1.13.1-6) ... Removing python3-numpy (1:1.26.4+ds-12) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Removing libio-compress-brotli-perl (0.004001-2+b3) ... Removing zutty (0.16.2.20241020+dfsg1-1) ... Removing libbz2-dev:amd64 (1.0.8-6) ... Removing libpng-dev:amd64 (1.6.44-2) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Removing libpcre2-dev:amd64 (10.44-4) ... Removing libreadline-dev:amd64 (8.2-5) ... Removing libncurses-dev:amd64 (6.5-2+b1) ... Removing libjpeg-dev:amd64 (1:2.1.5-3+b1) ... Removing libjpeg62-turbo-dev:amd64 (1:2.1.5-3+b1) ... Removing libc6-dev:amd64 (2.40-4) ... Removing libc-dev-bin (2.40-4) ... Removing libcrypt-dev:amd64 (1:4.4.36-5) ... Removing samtools (1.20-3) ... Removing libhts3t64:amd64 (1.20+ds-2) ... Removing libcurl3t64-gnutls:amd64 (8.11.0-1) ... Removing libdata-dump-perl (1.25-1) ... Removing libdbus-1-3:amd64 (1.14.10-6) ... Removing libdeflate-dev:amd64 (1.22-1) ... Removing libdpkg-perl (1.22.11) ... Removing mesa-vulkan-drivers:amd64 (24.2.8-1) ... Removing libegl1:amd64 (1.7.0-1+b2) ... Removing libegl-mesa0:amd64 (24.2.8-1) ... Removing libgl1:amd64 (1.7.0-1+b2) ... Removing libglx0:amd64 (1.7.0-1+b2) ... Removing libglx-mesa0:amd64 (24.2.8-1) ... Removing python3-cffi-backend:amd64 (1.17.1-2+b1) ... Removing python3-babel (2.16.0-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-pkg-resources (75.2.0-1) ... Removing python3-inflect (7.3.1-2) ... Removing python3-typeguard (4.4.1-1) ... Removing ncbi-blast+ (2.16.0+ds-6+b1) ... Removing python3-tzlocal (5.2-1.1) ... Removing libgl1-mesa-dri:amd64 (24.2.8-1) ... Removing libgbm1:amd64 (24.2.8-1) ... Removing libfakeroot:amd64 (1.36-1) ... Removing libfile-desktopentry-perl (0.22-3) ... Removing libfile-basedir-perl (0.09-2) ... Removing libfile-fcntllock-perl (0.22-4+b4) ... Removing libhtml-format-perl (2.16-2) ... Removing libfont-afm-perl (1.20-4) ... Removing libhttp-daemon-perl (6.16-1) ... Removing libmailtools-perl (2.22-1) ... Removing libnet-smtp-ssl-perl (1.04-2) ... Removing libxml-xpathengine-perl (0.14-2) ... Removing libgles2:amd64 (1.7.0-1+b2) ... Removing libglib2.0-data (2.82.2-3) ... Removing libglvnd0:amd64 (1.7.0-1+b2) ... Removing libimagequant0:amd64 (2.18.0-1+b2) ... Removing libgpm2:amd64 (1.20.7-11+b1) ... Removing libtirpc-dev:amd64 (1.3.4+ds-1.3+b1) ... Removing libhtml-form-perl (6.12-1) ... Removing libhtscodecs2:amd64 (1.6.1-1) ... Removing libxaw7:amd64 (2:1.0.16-1) ... Removing libxmu6:amd64 (2:1.1.3-3+b3) ... Removing libio-stringy-perl (2.113-2) ... Removing libipc-system-simple-perl (1.30-2) ... Removing python-biopython-doc (1.84+dfsg-4) ... Removing libjs-sphinxdoc (7.4.7-4) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libksba8:amd64 (1.6.7-2+b1) ... Removing liblcms2-2:amd64 (2.16-2) ... Removing libldap-common (2.5.18+dfsg-3) ... Removing liblmdb0:amd64 (0.9.31-1+b2) ... Removing liblocale-gettext-perl (1.07-7+b1) ... Removing liblzma-dev:amd64 (5.6.3-1+b1) ... Removing libmbedtls21:amd64 (3.6.2-3) ... Removing libmbedx509-7:amd64 (3.6.2-3) ... Removing libmbedcrypto16:amd64 (3.6.2-3) ... Removing libncurses6:amd64 (6.5-2+b1) ... Removing libnghttp3-9:amd64 (1.6.0-2) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Removing libngtcp2-16:amd64 (1.9.1-1) ... Removing libnpth0t64:amd64 (1.6-3.1+b1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b4) ... Removing libpcre2-16-0:amd64 (10.44-4) ... Removing libpcre2-32-0:amd64 (10.44-4) ... Removing libpcre2-posix3:amd64 (10.44-4) ... Removing pkgconf:amd64 (1.8.1-4) ... Removing pkgconf-bin (1.8.1-4) ... Removing libpkgconf3:amd64 (1.8.1-4) ... Removing libpng-tools (1.6.44-2) ... Removing libsasl2-modules:amd64 (2.1.28+dfsg1-8) ... Removing libwebpmux3:amd64 (1.4.0-0.1+b1) ... Removing libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Removing libtext-iconv-perl:amd64 (1.7-8+b4) ... Removing libtie-ixhash-perl (1.23-4) ... Removing libuv1t64:amd64 (1.48.0-7) ... Removing libvulkan1:amd64 (1.3.296.0-1) ... Removing libwayland-client0:amd64 (1.23.0-1+b1) ... Removing libwayland-server0:amd64 (1.23.0-1+b1) ... Removing xauth (1:1.1.2-1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b3) ... Removing libx11-protocol-perl (0.56-9) ... Removing libxcb-glx0:amd64 (1.17.0-2+b1) ... Removing libxcb-randr0:amd64 (1.17.0-2+b1) ... Removing libxcb-shape0:amd64 (1.17.0-2+b1) ... Removing libxcomposite1:amd64 (1:0.4.6-1) ... Removing libxcursor1:amd64 (1:1.2.2-1+b1) ... Removing libxxf86dga1:amd64 (2:1.1.5-1+b2) ... Removing libxfixes3:amd64 (1:6.0.0-2+b2) ... Removing libxi6:amd64 (2:1.8.2-1) ... Removing libxinerama1:amd64 (2:1.1.4-3+b2) ... Removing libxkbfile1:amd64 (1:1.1.0-1+b2) ... Removing libxmuu1:amd64 (2:1.1.3-3+b3) ... Removing libxpm4:amd64 (1:3.5.17-1+b2) ... Removing libxrandr2:amd64 (2:1.5.4-1+b1) ... Removing libxtst6:amd64 (2:1.2.3-1.1+b2) ... Removing libxv1:amd64 (2:1.0.11-1.1+b2) ... Removing linux-libc-dev (6.11.10-1) ... Removing luit (2.0.20240910-1) ... Removing 'diversion of /usr/bin/luit to /usr/bin/luit.x11-utils by luit' Removing 'diversion of /usr/share/man/man1/luit.1.gz to /usr/share/man/man1/luit.x11-utils.1.gz by luit' Removing make (4.3-4.1) ... Removing manpages-dev (6.9.1-1) ... Removing manpages (6.9.1-1) ... Removing ncbi-data (6.1.20170106+dfsg2-5) ... Removing patch (2.7.6-7) ... Removing publicsuffix (20241025.1547-0.1) ... Removing python-babel-localedata (2.16.0-1) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-freetype (2.5.1-1) ... Removing python3-jaraco.context (6.0.0-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-jinja2 (3.1.3-1) ... Removing python3-markupsafe (2.1.5-1+b2) ... Removing python3-more-itertools (10.5.0-1) ... Removing python3-olefile (0.47-1) ... Removing python3-typing-extensions (4.12.2-2) ... Removing r-cran-boot (1.3-31-1) ... Removing r-cran-class (7.3-22-2) ... Removing r-cran-cluster (2.1.6-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-foreign (0.8.87-1) ... Removing r-cran-kernsmooth (2.23-24-1) ... Removing r-cran-nlme (3.1.166-1) ... Removing r-cran-lattice (0.22-6-1) ... Removing r-cran-mass (7.3-61-1) ... Removing r-doc-html (4.4.2-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31) ... Removing xdg-user-dirs (0.18-1) ... Removing xz-utils (5.6.3-1+b1) ... Removing gcc-14 (14.2.0-8) ... Removing binutils (2.43.50.20241204-2) ... Removing gcc-14-x86-64-linux-gnu (14.2.0-8) ... Removing binutils-x86-64-linux-gnu (2.43.50.20241204-2) ... Removing libgprofng0:amd64 (2.43.50.20241204-2) ... Removing libctf0:amd64 (2.43.50.20241204-2) ... Removing libbinutils:amd64 (2.43.50.20241204-2) ... Removing binutils-common:amd64 (2.43.50.20241204-2) ... Removing r-base-core (4.4.2-1) ... Removing cpp-14 (14.2.0-8) ... Removing cpp-14-x86-64-linux-gnu (14.2.0-8) ... Removing libpangocairo-1.0-0:amd64 (1.55.0+ds-3) ... Removing libpangoft2-1.0-0:amd64 (1.55.0+ds-3) ... Removing libpango-1.0-0:amd64 (1.55.0+ds-3) ... Removing fontconfig (2.15.0-1.1+b1) ... Removing libtk8.6:amd64 (8.6.15-1) ... Removing libxft2:amd64 (2.3.6-1+b2) ... Removing libcairo2:amd64 (1.18.2-2) ... Removing libfontconfig1:amd64 (2.15.0-1.1+b1) ... Removing fontconfig-config (2.15.0-1.1+b1) ... Removing fonts-urw-base35 (20200910-8) ... Removing libgcc-14-dev:amd64 (14.2.0-8) ... Removing libasan8:amd64 (14.2.0-8) ... Removing libharfbuzz0b:amd64 (10.0.1-1) ... Removing libglib2.0-0t64:amd64 (2.82.2-3) ... Removing libatomic1:amd64 (14.2.0-8) ... Removing liblapack3:amd64 (3.12.0-4) ... Removing libblas3:amd64 (3.12.0-4) ... Removing libcc1-0:amd64 (14.2.0-8) ... Removing libctf-nobfd0:amd64 (2.43.50.20241204-2) ... Removing libcurl4t64:amd64 (8.11.0-1) ... Removing libthai0:amd64 (0.1.29-2+b1) ... Removing libdatrie1:amd64 (0.2.13-3+b1) ... Removing libtiff6:amd64 (4.5.1+git230720-5) ... Removing libdeflate0:amd64 (1.22-1) ... Removing mesa-libgallium:amd64 (24.2.8-1) ... Removing libdrm-amdgpu1:amd64 (2.4.123-1) ... Removing libdrm-intel1:amd64 (2.4.123-1) ... Removing libdrm-radeon1:amd64 (2.4.123-1) ... Removing libllvm19:amd64 (1:19.1.4-1) ... Removing libedit2:amd64 (3.1-20240808-1) ... Removing libelf1t64:amd64 (0.192-4) ... Removing python3 (3.12.6-1) ... Removing python3.12 (3.12.8-1) ... Removing python3-minimal (3.12.6-1) ... Removing python3.12-minimal (3.12.8-1) ... Removing libexpat1:amd64 (2.6.4-1) ... Removing xfonts-utils (1:7.7+7) ... Removing libfontenc1:amd64 (1:1.1.8-1+b1) ... Removing libfribidi0:amd64 (1.0.15-1) ... Removing libgfortran5:amd64 (14.2.0-8) ... Removing libglapi-mesa:amd64 (24.2.8-1) ... Removing libgomp1:amd64 (14.2.0-8) ... Removing libgraphite2-3:amd64 (1.3.14-2+b1) ... Removing libpython3-stdlib:amd64 (3.12.6-1) ... Removing libpython3.12-stdlib:amd64 (3.12.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libhwasan0:amd64 (14.2.0-8) ... Removing libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Removing libsm6:amd64 (2:1.2.4-1) ... Removing libice6:amd64 (2:1.1.1-1) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Removing libicu72:amd64 (72.1-5+b1) ... Removing libisl23:amd64 (0.27-1) ... Removing libitm1:amd64 (14.2.0-8) ... Removing libjansson4:amd64 (2.14-2+b3) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Removing libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing liblsan0:amd64 (14.2.0-8) ... Removing libmpc3:amd64 (1.3.1-1+b3) ... Removing libmpfr6:amd64 (4.2.1-1+b2) ... Removing libncursesw6:amd64 (6.5-2+b1) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libnsl2:amd64 (1.3.0-3+b3) ... Removing libpaper-utils (1.1.29+b2) ... Removing libpaper1:amd64 (1.1.29+b2) ... Removing libpciaccess0:amd64 (0.17-3+b2) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libpython3.12-minimal:amd64 (3.12.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (14.2.0-8) ... Removing libreadline8t64:amd64 (8.2-5) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Removing libsensors5:amd64 (1:3.6.0-10+b1) ... Removing libsensors-config (1:3.6.0-10) ... Removing libsframe1:amd64 (2.43.50.20241204-2) ... Removing libwebp7:amd64 (1.4.0-0.1+b1) ... Removing libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtcl8.6:amd64 (8.6.15+dfsg-2) ... Removing libthai-data (0.1.29-2) ... Removing libtsan2:amd64 (14.2.0-8) ... Removing libubsan1:amd64 (14.2.0-8) ... Removing libx11-xcb1:amd64 (2:1.8.10-2) ... Removing libxcb-xfixes0:amd64 (1.17.0-2+b1) ... Removing libxcb-sync1:amd64 (1.17.0-2+b1) ... Removing libxcb-dri2-0:amd64 (1.17.0-2+b1) ... Removing libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Removing libxcb-present0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1+b2) ... Removing libxshmfence1:amd64 (1.3-1+b2) ... Removing libxss1:amd64 (1:1.2.3-1+b2) ... Removing libz3-4:amd64 (4.13.3-1) ... Removing media-types (10.1.0) ... Removing readline-common (8.2-5) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.24) ... Removing unzip (6.0-28) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-14) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2+b6) ... Removing libdrm2:amd64 (2.4.123-1) ... Removing libdrm-common (2.4.123-1) ... Removing libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-3) ... Removing libkrb5-3:amd64 (1.21.3-3) ... Removing libk5crypto3:amd64 (1.21.3-3) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-3) ... Removing libpng16-16t64:amd64 (1.6.44-2) ... Removing libtirpc-common (1.3.4+ds-1.3) ... Removing libxext6:amd64 (2:1.3.4-1+b2) ... Removing libx11-6:amd64 (2:1.8.10-2) ... Removing libx11-data (2:1.8.10-2) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing libwww-perl (6.77-1) ... Removing libhttp-negotiate-perl (6.01-2) ... Removing libfile-listing-perl (6.16-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libhttp-cookies-perl (6.11-1) ... Removing liblwp-protocol-https-perl (6.14-1) ... Removing libnet-http-perl (6.23-1) ... Removing libhtml-tree-perl (5.07-3) ... Removing libhtml-parser-perl:amd64 (3.83-1+b1) ... Removing libio-socket-ssl-perl (2.089-1) ... Removing libnet-ssleay-perl:amd64 (1.94-2) ... Removing libhtml-tagset-perl (3.24-1) ... Removing libtry-tiny-perl (0.32-1) ... Removing netbase (6.4) ... Removing perl-openssl-defaults:amd64 (7+b2) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-message-perl (7.00-2) ... Removing libclone-perl:amd64 (0.47-1+b1) ... Removing libencode-locale-perl (1.05-3) ... Removing libhttp-date-perl (6.06-1) ... Removing liburi-perl (5.30-1) ... Removing libio-html-perl (1.004-3) ... Removing liblwp-mediatypes-perl (6.04-2) ... Removing libtimedate-perl (2.3300-2) ... Removing openssl (3.3.2-2) ... Removing perl (5.40.0-8) ... Removing libperl5.40:amd64 (5.40.0-8) ... Removing libgdbm-compat4t64:amd64 (1.24-2) ... Removing libgdbm6t64:amd64 (1.24-2) ... Removing perl-modules-5.40 (5.40.0-8) ... Processing triggers for libc-bin (2.40-4) ... 2m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-get', 'remove', 'adduser', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bowtie2', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cd-hit', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'g++-', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gfortran', 'gfortran-14', 'gfortran-14-x86-64-linux-gnu', 'gfortran-x86-64-linux-gnu', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpgconf', 'gpgsm', 'icu-devtools', 'javascript-common', 'krb5-locales', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-merge-perl', 'libapparmor1:amd64', 'libasan8:amd64', 'libassuan9:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libclone-perl:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfakeroot:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran-14-dev:amd64', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libgles2:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmailtools-perl', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnpth0t64:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix3:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'liburi-perl', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'luit', 'make', 'manpages', 'manpages-dev', 'media-types', 'mesa-libgallium:amd64', 'mesa-vulkan-drivers:amd64', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkgconf:amd64', 'pkgconf-bin', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python3', 'python3-autocommand', 'python3-babel', 'python3-biopython', 'python3-cairo', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-decorator', 'python3-freetype', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jinja2', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-reportlab', 'python3-rlpycairo', 'python3-rpy2', 'python3-scipy', 'python3-typeguard', 'python3-typing-extensions', 'python3-tzlocal', 'python3.12', 'python3.12-minimal', 'r-base-core', 'r-base-dev', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'rpcsvc-proto', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'ucf', 'unzip', 'w3c-sgml-lib', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'zutty', 'srst2'] 2m49.1s INFO: Running scripts post_remove 2m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_remove_exceptions'] 2m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_remove_exceptions'] 2m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg', '--purge', 'adduser', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bowtie2', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cd-hit', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'g++', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gfortran', 'gfortran-14', 'gfortran-14-x86-64-linux-gnu', 'gfortran-x86-64-linux-gnu', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpgconf', 'gpgsm', 'icu-devtools', 'javascript-common', 'krb5-locales', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-merge-perl', 'libapparmor1:amd64', 'libasan8:amd64', 'libassuan9:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libclone-perl:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfakeroot:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran-14-dev:amd64', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libgles2:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmailtools-perl', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnpth0t64:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix3:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'liburi-perl', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'luit', 'make', 'manpages', 'manpages-dev', 'media-types', 'mesa-libgallium:amd64', 'mesa-vulkan-drivers:amd64', 'ncbi-blast+', 'ncbi-data', 'netbase', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkgconf:amd64', 'pkgconf-bin', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python3', 'python3-autocommand', 'python3-babel', 'python3-biopython', 'python3-cairo', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-decorator', 'python3-freetype', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jinja2', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-reportlab', 'python3-rlpycairo', 'python3-rpy2', 'python3-scipy', 'python3-typeguard', 'python3-typing-extensions', 'python3-tzlocal', 'python3.12', 'python3.12-minimal', 'r-base-core', 'r-base-dev', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'rpcsvc-proto', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'ucf', 'unzip', 'w3c-sgml-lib', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'zutty'] 2m50.1s DUMP: (Reading database ... 5261 files and directories currently installed.) Purging configuration files for adduser (3.137) ... dpkg: warning: ignoring request to remove binutils which isn't installed Purging configuration files for binutils-common:amd64 (2.43.50.20241204-2) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove bowtie2 which isn't installed dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove bzip2-doc which isn't installed Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cd-hit which isn't installed Purging configuration files for cpp (4:14.2.0-1) ... dpkg: warning: ignoring request to remove cpp-14 which isn't installed dpkg: warning: ignoring request to remove cpp-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which isn't installed Purging configuration files for dbus (1.14.10-6) ... rmdir: failed to remove '/var/run/dbus': No such file or directory rmdir: failed to remove '/var/lib/dbus': Directory not empty dpkg: warning: while removing dbus, directory '/var/lib/dbus' not empty so not removed dpkg: warning: ignoring request to remove dbus-bin which isn't installed Purging configuration files for dbus-daemon (1.14.10-6) ... dpkg: warning: ignoring request to remove dbus-session-bus-common which isn't installed dpkg: warning: ignoring request to remove dbus-system-bus-common which isn't installed Purging configuration files for dirmngr (2.2.45-2) ... Purging configuration files for dpkg-dev (1.22.11) ... dpkg: warning: ignoring request to remove fakeroot which isn't installed Purging configuration files for fontconfig (2.15.0-1.1+b1) ... Purging configuration files for fontconfig-config (2.15.0-1.1+b1) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... dpkg: warning: ignoring request to remove fonts-dejavu-extra which isn't installed Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed Purging configuration files for fonts-urw-base35 (20200910-8) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-14 which isn't installed dpkg: warning: ignoring request to remove g++-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-14 which isn't installed dpkg: warning: ignoring request to remove gcc-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gfortran which isn't installed dpkg: warning: ignoring request to remove gfortran-14 which isn't installed dpkg: warning: ignoring request to remove gfortran-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gfortran-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed dpkg: warning: ignoring request to remove gnupg-l10n which isn't installed dpkg: warning: ignoring request to remove gnupg-utils which isn't installed dpkg: warning: ignoring request to remove gpg which isn't installed Purging configuration files for gpg-agent (2.2.45-2) ... dpkg: warning: ignoring request to remove gpg-wks-client which isn't installed dpkg: warning: ignoring request to remove gpgconf which isn't installed dpkg: warning: ignoring request to remove gpgsm which isn't installed dpkg: warning: ignoring request to remove icu-devtools which isn't installed Purging configuration files for javascript-common (11+nmu1) ... dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-merge-perl which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libassuan9 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas-dev which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbz2-dev which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-5) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdata-dump-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdeflate-dev which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdpkg-perl which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libegl-mesa0 which isn't installed dpkg: warning: ignoring request to remove libegl1 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed Purging configuration files for libfakeroot:amd64 (1.36-1) ... dpkg: warning: ignoring request to remove libfile-basedir-perl which isn't installed dpkg: warning: ignoring request to remove libfile-desktopentry-perl which isn't installed dpkg: warning: ignoring request to remove libfile-fcntllock-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-mimeinfo-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgbm1 which isn't installed dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgfortran-14-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (24.2.8-1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed dpkg: warning: ignoring request to remove libgles2 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.82.2-3) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-3) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhts3t64 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu-dev which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libio-compress-brotli-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove libipc-system-simple-perl which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg-dev which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo-dev which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libksba8 which isn't installed dpkg: warning: ignoring request to remove liblapack-dev which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed Purging configuration files for libldap-common (2.5.18+dfsg-3) ... dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libllvm19 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove liblocale-gettext-perl which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove liblzma-dev which isn't installed dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncurses-dev which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnet-dbus-perl which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-16 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which isn't installed dpkg: warning: ignoring request to remove libnpth0t64 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.29+b2) ... dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcre2-16-0 which isn't installed dpkg: warning: ignoring request to remove libpcre2-32-0 which isn't installed dpkg: warning: ignoring request to remove libpcre2-dev which isn't installed dpkg: warning: ignoring request to remove libpcre2-posix3 which isn't installed dpkg: warning: ignoring request to remove libperl5.40 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpkgconf3 which isn't installed dpkg: warning: ignoring request to remove libpng-dev which isn't installed dpkg: warning: ignoring request to remove libpng-tools which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.8-1) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline-dev which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-5) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed Purging configuration files for libsasl2-modules:amd64 (2.1.28+dfsg1-8) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Purging configuration files for libsensors-config (1:3.6.0-10) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libsframe1 which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtext-iconv-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1.3) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed Purging configuration files for libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libuv1t64 which isn't installed dpkg: warning: ignoring request to remove libvulkan1 which isn't installed dpkg: warning: ignoring request to remove libwayland-client0 which isn't installed dpkg: warning: ignoring request to remove libwayland-server0 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-protocol-perl which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-randr0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shape0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxkbfile1 which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6t64 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxv1 which isn't installed dpkg: warning: ignoring request to remove libxxf86dga1 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for luit (2.0.20240910-1) ... dpkg: warning: ignoring request to remove make which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed Purging configuration files for media-types (10.1.0) ... dpkg: warning: ignoring request to remove mesa-libgallium which isn't installed dpkg: warning: ignoring request to remove mesa-vulkan-drivers which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg2-5) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.3.2-2) ... dpkg: warning: ignoring request to remove patch which isn't installed Purging configuration files for perl (5.40.0-8) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove pinentry-curses which isn't installed Purging configuration files for pkgconf:amd64 (1.8.1-4) ... dpkg: warning: ignoring request to remove pkgconf-bin which isn't installed dpkg: warning: ignoring request to remove publicsuffix which isn't installed dpkg: warning: ignoring request to remove python-babel-localedata which isn't installed dpkg: warning: ignoring request to remove python-biopython-doc which isn't installed Purging configuration files for python3 (3.12.6-1) ... dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-babel which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3-rpy2 which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tzlocal which isn't installed dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.8-1) ... Purging configuration files for r-base-core (4.4.2-1) ... dpkg: warning: ignoring request to remove r-base-dev which isn't installed dpkg: warning: ignoring request to remove r-cran-boot which isn't installed dpkg: warning: ignoring request to remove r-cran-class which isn't installed dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-spatial which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-doc-html which isn't installed dpkg: warning: ignoring request to remove r-recommended which isn't installed Purging configuration files for readline-common (8.2-5) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for sgml-base (1.31) ... Purging configuration files for shared-mime-info (2.4-5+b1) ... Purging configuration files for ucf (3.0043+nmu1) ... Purging configuration files for unzip (6.0-28) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23.1) ... Purging configuration files for x11-utils (7.7+7) ... Purging configuration files for x11-xserver-utils (7.7+10+b1) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.18-1) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+7) ... Purging configuration files for xml-core (0.19) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed dpkg: warning: ignoring request to remove zutty which isn't installed 2m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg', '--purge', 'adduser', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bowtie2', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cd-hit', 'cpp', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'g++', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'gfortran', 'gfortran-14', 'gfortran-14-x86-64-linux-gnu', 'gfortran-x86-64-linux-gnu', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpgconf', 'gpgsm', 'icu-devtools', 'javascript-common', 'krb5-locales', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-merge-perl', 'libapparmor1:amd64', 'libasan8:amd64', 'libassuan9:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libclone-perl:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1t64:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfakeroot:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran-14-dev:amd64', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libgles2:amd64', 'libglib2.0-0t64:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwasan0:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libio-compress-brotli-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm19:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmailtools-perl', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnpth0t64:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix3:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan2:amd64', 'libubsan1:amd64', 'liburi-perl', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'luit', 'make', 'manpages', 'manpages-dev', 'media-types', 'mesa-libgallium:amd64', 'mesa-vulkan-drivers:amd64', 'ncbi-blast+', 'ncbi-data', 'netbase', 'openssl', 'patch', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkgconf:amd64', 'pkgconf-bin', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python3', 'python3-autocommand', 'python3-babel', 'python3-biopython', 'python3-cairo', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-decorator', 'python3-freetype', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jinja2', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-reportlab', 'python3-rlpycairo', 'python3-rpy2', 'python3-scipy', 'python3-typeguard', 'python3-typing-extensions', 'python3-tzlocal', 'python3.12', 'python3.12-minimal', 'r-base-core', 'r-base-dev', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'rpcsvc-proto', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'ucf', 'unzip', 'w3c-sgml-lib', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'zutty'] 2m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg', '--purge', 'srst2'] 2m50.2s DUMP: dpkg: warning: ignoring request to remove srst2 which isn't installed 2m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg', '--purge', 'srst2'] 2m50.2s INFO: Running scripts post_purge 2m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_purge_exceptions'] 2m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_purge_exceptions'] 2m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg', '--purge', '--pending'] 2m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg', '--purge', '--pending'] 2m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg', '--remove', '--pending'] 2m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg', '--remove', '--pending'] 2m50.2s INFO: Running scripts post_test 2m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_test_exceptions'] 2m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'tmp/scripts/post_test_exceptions'] 2m50.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt'] 2m50.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt'] 2m51.0s ERROR: WARN: Broken symlinks: /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf 2m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg-divert', '--list'] 2m51.0s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 2m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'dpkg-divert', '--list'] 2m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-get', 'clean'] 2m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt', 'apt-get', 'clean'] 2m51.1s DEBUG: Recording chroot state 2m51.6s INFO: Warning: Package purging left files on system: /etc/fonts/ owned by: fontconfig-config, fonts-urw-base35, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-urw-base35, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned 2m51.6s INFO: PASS: Installation and purging test. 2m51.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/shm'] 2m51.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/shm'] 2m51.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/console'] 2m51.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/console'] 2m51.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/ptmx'] 2m51.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/ptmx'] 2m51.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/pts'] 2m51.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/dev/pts'] 2m51.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/proc'] 2m52.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt/proc'] 2m52.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt'] 2m52.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpkkrrzbrt'] 2m52.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpkkrrzbrt 2m52.1s INFO: PASS: All tests. 2m52.1s INFO: piuparts run ends. ret=0 End: 2024-12-08 04:09:00 GMT