Start: 2025-05-22 09:17:25 GMT Package: mummer Version: 3.23+dfsg-8 Installed-Size: 3307 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), perl:any, gawk Description: Efficient sequence alignment of full genomes Homepage: https://mummer.sourceforge.net/ Description-md5: 38971f03178291c551b90e00bbe5418f Tag: field::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, role::program, scope::utility, use::comparing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/m/mummer/mummer_3.23+dfsg-8_amd64.deb Size: 661672 MD5sum: 04af4d909a3cdf81103b7fb7e2e2bf26 SHA256: 9d5f8f461331562e6c58f11a37f227c3334918d2f0c5e22e7715d21b7de85d2e Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie --no-upgrade-test --apt mummer=3.23+dfsg-8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie --no-upgrade-test --apt mummer=3.23+dfsg-8 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp0dcmq8xw 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp0dcmq8xw 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmp0dcmq8xw/tmp/scripts/ 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp0dcmq8xw/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw', 'apt-get', 'update'] 60m0.2s ERROR: Terminating command due to excessive runtime 60m0.7s DUMP: ***** Command was terminated after exceeding runtime limit (3600 s) ***** 60m0.7s ERROR: Command failed (status=-15): ['chroot', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw', 'apt-get', 'update'] ***** Command was terminated after exceeding runtime limit (3600 s) ***** 60m0.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/shm'] 60m0.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/shm'] 60m0.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/console'] 60m0.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/console'] 60m0.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/ptmx'] 60m1.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/ptmx'] 60m1.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/pts'] 60m1.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/dev/pts'] 60m1.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/proc'] 60m1.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw/proc'] 60m1.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw'] 60m1.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp0dcmq8xw'] 60m1.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp0dcmq8xw 60m1.0s ERROR: piuparts run ends. ret=1 End: 2025-05-22 10:17:26 GMT