Start: 2024-12-05 03:57:33 GMT Package: python3-pybel Source: pybel Version: 0.15.5-1 Installed-Size: 1561 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bel-resources, python3-bioregistry, python3-click, python3-click-plugins, python3-humanize, python3-jsonschema, python3-more-itertools, python3-networkx, python3-pandas, python3-pyparsing, python3-pystow, python3-ratelimit, python3-requests, python3-requests-file, python3-sqlalchemy, python3-tabulate, python3-tqdm, python3:any, libjs-jquery, libjs-d3 Suggests: python-pybel-doc Description: Biological Expression Language Homepage: https://pybel.readthedocs.io Description-md5: 7f907ff46c47b8a43a5a2fcaa1abff11 Section: science Priority: optional Filename: pool/main/p/pybel/python3-pybel_0.15.5-1_all.deb Size: 242148 MD5sum: ece61e92b9ca645d0febabc3c569c143 SHA256: a13a56cf61612b0148a0c5a7f7fd5b0a77ec088f5daa763ea09e7433fbda09db Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie --no-upgrade-test --apt python3-pybel=0.15.5-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie --no-upgrade-test --apt python3-pybel=0.15.5-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmphl1m0_gi 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmphl1m0_gi 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmphl1m0_gi/tmp/scripts/ 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmphl1m0_gi/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-get', 'update'] 0m3.1s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [172 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9348 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6273 kB] Fetched 15.8 MB in 1s (10.6 MB/s) Reading package lists... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-get', 'update'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-get', '-yf', 'dist-upgrade'] 0m5.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt libapt-pkg6.0t64 libcap-ng0 libseccomp2 libsystemd0 libudev1 tzdata 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3426 kB of archives. After this operation, 31.7 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257~rc3-1 [448 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257~rc3-1 [147 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libapt-pkg6.0t64 amd64 2.9.16 [1113 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libseccomp2 amd64 2.5.5-2 [47.8 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 apt amd64 2.9.16 [1397 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libcap-ng0 amd64 0.8.5-4 [17.3 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-4 [256 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3426 kB in 0s (51.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5150 files and directories currently installed.) Preparing to unpack .../libsystemd0_257~rc3-1_amd64.deb ... Unpacking libsystemd0:amd64 (257~rc3-1) over (257~rc2-3) ... Setting up libsystemd0:amd64 (257~rc3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5150 files and directories currently installed.) Preparing to unpack .../libudev1_257~rc3-1_amd64.deb ... Unpacking libudev1:amd64 (257~rc3-1) over (257~rc2-3) ... Setting up libudev1:amd64 (257~rc3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5150 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.16_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.16) over (2.9.14) ... Setting up libapt-pkg6.0t64:amd64 (2.9.16) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5150 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-2_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-2) over (2.5.5-1+b3) ... Setting up libseccomp2:amd64 (2.5.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5149 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.16_amd64.deb ... Unpacking apt (2.9.16) over (2.9.14) ... Setting up apt (2.9.16) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5149 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.5-4_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.5-4) over (0.8.5-3+b1) ... Setting up libcap-ng0:amd64 (0.8.5-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5148 files and directories currently installed.) Preparing to unpack .../tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) over (2024b-3) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 5 03:57:39 UTC 2024. Universal Time is now: Thu Dec 5 03:57:39 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Processing triggers for libc-bin (2.40-3) ... 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-get', '-yf', 'dist-upgrade'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.3s DUMP: a29e00c0a36a798deb0473312a502fd3 - 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.3s INFO: Running scripts post_setup 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_setup_dummy_users'] 0m7.1s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_setup_dummy_users'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_setup_minimize'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_setup_minimize'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_setup_zz_backports'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_setup_zz_backports'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-get', 'clean'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-get', 'clean'] 0m7.3s DEBUG: Recording chroot state 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.0s DUMP: install ok installed apt apt 2.9.16 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-11 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1+b1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-8 install ok installed gpgv gpgv 2.2.45-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.16 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libblkid1:amd64 libblkid1 2.40.2-11 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.273 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-11 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-11 install ok installed libss2:amd64 libss2 1.47.1-1+b1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-8 install ok installed libsystemd0:amd64 libsystemd0 257~rc3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 257~rc3-1 install ok installed libunistring5:amd64 libunistring5 1.2-1+b1 install ok installed libuuid1:amd64 libuuid1 2.40.2-11 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-11 install ok installed login.defs login.defs 1:4.16.0-5 install ok installed logsave logsave 1.47.1-1+b1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-11 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-5 install ok installed perl-base perl-base 5.40.0-8 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-11 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg-divert', '--list'] 0m8.0s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg-divert', '--list'] 0m8.0s INFO: Running scripts is_testable 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s INFO: apt-cache does not know about any of the requested packages 0m8.0s INFO: Running scripts pre_test 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_test_root_password'] 0m8.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_test_root_password'] 0m8.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi'] 0m8.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi'] 0m8.7s DEBUG: No broken symlinks as far as we can find. 0m8.7s INFO: Running scripts pre_install 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_install_database-server'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_install_database-server'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_install_exceptions'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_install_exceptions'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_install_extras'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_install_extras'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_install_log_alternatives'] 0m8.7s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_install_log_alternatives'] 0m8.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi'] 0m9.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi'] 0m9.4s DEBUG: No broken symlinks as far as we can find. 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-cache', 'policy'] 0m10.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-cache', 'policy'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-cache', 'policy', 'python3-pybel'] 0m10.2s DUMP: python3-pybel: Installed: (none) Candidate: 0.15.5-1 Version table: 0.15.5-1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-cache', 'policy', 'python3-pybel'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-get', '-y', 'install', 'python3-pybel=0.15.5-1'] 0m43.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates libblas3 libexpat1 libgfortran5 libgssapi-krb5-2 libjs-d3 libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libncursesw6 libnsl2 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8t64 libsqlite3-0 libtirpc-common libtirpc3t64 media-types netbase openssl python3 python3-annotated-types python3-attr python3-autocommand python3-bel-resources python3-bioregistry python3-certifi python3-chardet python3-charset-normalizer python3-click python3-click-plugins python3-colorama python3-curies python3-dateutil python3-dnspython python3-email-validator python3-greenlet python3-humanize python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jsonschema python3-jsonschema-specifications python3-minimal python3-more-itertools python3-multisplitby python3-networkx python3-numpy python3-pandas python3-pandas-lib python3-pkg-resources python3-pydantic python3-pydantic-core python3-pyparsing python3-pystow python3-ratelimit python3-referencing python3-requests python3-requests-file python3-rpds-py python3-sortedcontainers python3-sqlalchemy python3-tabulate python3-tqdm python3-trie python3-typeguard python3-typing-extensions python3-tz python3-urllib3 python3.12 python3.12-minimal readline-common Suggested packages: krb5-doc krb5-user python3-doc python3-tk python3-venv python-attr-doc node-prismjs libjs-jquery-datatables libjs-vue python-charset-normalizer-doc python3-trio python3-aioquic python-greenlet-dev python-greenlet-doc python-jsonschema-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python3-setuptools python-pybel-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-sortedcontainers-doc python-sqlalchemy-doc python3-asyncpg python3-pg8000 python3-psycopg2 python3-psycopg2cffi python3-aiosqlite python3-mariadb-connector python3-mysqldb python3-mysql.connector python3-pyodbc python3-pymssql python3-cx-oracle python3-oracledb python-trie-doc python3-brotli python3.12-venv python3.12-doc binutils binfmt-support readline-doc Recommended packages: javascript-common krb5-locales libgpm2 python3-cryptography python3-h2 python3-httpcore python3-httpx python3-json-pointer python3-rfc3987 python3-uritemplate python3-webcolors python3-gdal python3-matplotlib python3-pydot python3-pygraphviz python3-scipy python3-yaml python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-sqlalchemy-ext The following NEW packages will be installed: ca-certificates libblas3 libexpat1 libgfortran5 libgssapi-krb5-2 libjs-d3 libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libncursesw6 libnsl2 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8t64 libsqlite3-0 libtirpc-common libtirpc3t64 media-types netbase openssl python3 python3-annotated-types python3-attr python3-autocommand python3-bel-resources python3-bioregistry python3-certifi python3-chardet python3-charset-normalizer python3-click python3-click-plugins python3-colorama python3-curies python3-dateutil python3-dnspython python3-email-validator python3-greenlet python3-humanize python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jsonschema python3-jsonschema-specifications python3-minimal python3-more-itertools python3-multisplitby python3-networkx python3-numpy python3-pandas python3-pandas-lib python3-pkg-resources python3-pybel python3-pydantic python3-pydantic-core python3-pyparsing python3-pystow python3-ratelimit python3-referencing python3-requests python3-requests-file python3-rpds-py python3-sortedcontainers python3-sqlalchemy python3-tabulate python3-tqdm python3-trie python3-typeguard python3-typing-extensions python3-tz python3-urllib3 python3.12 python3.12-minimal readline-common 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 51.3 MB of archives. After this operation, 290 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5-2+b1 [136 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:11 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get:22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 python3-annotated-types all 0.7.0-1 [18.8 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 python3-multisplitby all 0.0.1-6 [4688 B] Get:35 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get:36 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.8-2 [41.6 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.2.3-3 [112 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get:43 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 python3-requests-file all 2.0.0-1 [6424 B] Get:48 http://deb.debian.org/debian trixie/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 python3-click all 8.1.7-2 [94.3 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 python3-bel-resources all 0.0.3-4 [13.5 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 python3-pydantic-core amd64 2.27.1-1 [1737 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 python3-dnspython all 2.6.1-1 [161 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 python3-email-validator all 2.2.0-1 [31.6 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 python3-pydantic amd64 2.10.2-1 [364 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 python3-trie all 0.4.0+ds-1 [7640 B] Get:57 http://deb.debian.org/debian trixie/main amd64 python3-curies all 0.9.0-1 [38.3 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 python3-tqdm all 4.67.1-1 [91.0 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 python3-pystow all 0.5.5-1 [25.6 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 python3-bioregistry all 0.11.12-3 [3907 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 python3-click-plugins all 1.1.1-4 [9852 B] Get:62 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 python3-greenlet amd64 3.1.0-1+b1 [179 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 python3-humanize all 4.11.0-1 [52.7 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 python3-rpds-py amd64 0.21.0-2 [287 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 python3-referencing all 0.35.1-1 [23.5 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get:68 http://deb.debian.org/debian trixie/main amd64 python3-jsonschema all 4.19.2-5 [71.4 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get:70 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5+b1 [7307 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 python3-ratelimit all 2.2.1-2 [6108 B] Get:76 http://deb.debian.org/debian trixie/main amd64 python3-sqlalchemy all 2.0.32+ds1-1 [1196 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 python3-pybel all 0.15.5-1 [242 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 51.3 MB in 1s (92.5 MB/s) Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5153 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5473 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../03-libncursesw6_6.5-2+b1_amd64.deb ... Unpacking libncursesw6:amd64 (6.5-2+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../05-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../06-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../07-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../08-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../09-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../10-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../11-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../12-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../13-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../14-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6031 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../02-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../03-libblas3_3.12.0-4_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-4) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../04-libgfortran5_14.2.0-8_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-8) ... Selecting previously unselected package libjs-d3. Preparing to unpack .../05-libjs-d3_3.5.17-4_all.deb ... Unpacking libjs-d3 (3.5.17-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../06-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../07-liblapack3_3.12.0-4_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-4) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../08-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-annotated-types. Preparing to unpack .../09-python3-annotated-types_0.7.0-1_all.deb ... Unpacking python3-annotated-types (0.7.0-1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../10-python3-attr_23.2.0-2_all.deb ... Unpacking python3-attr (23.2.0-2) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../11-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-multisplitby. Preparing to unpack .../12-python3-multisplitby_0.0.1-6_all.deb ... Unpacking python3-multisplitby (0.0.1-6) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../13-python3-certifi_2024.8.30+dfsg-1_all.deb ... Unpacking python3-certifi (2024.8.30+dfsg-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../14-python3-charset-normalizer_3.4.0-1+b1_amd64.deb ... Unpacking python3-charset-normalizer (3.4.0-1+b1) ... Selecting previously unselected package python3-idna. Preparing to unpack .../15-python3-idna_3.8-2_all.deb ... Unpacking python3-idna (3.8-2) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../16-python3-urllib3_2.2.3-3_all.deb ... Unpacking python3-urllib3 (2.2.3-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../17-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../18-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../19-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../20-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../21-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../22-python3-pkg-resources_74.1.2-2_all.deb ... Unpacking python3-pkg-resources (74.1.2-2) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../23-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../24-python3-requests_2.32.3+dfsg-1_all.deb ... Unpacking python3-requests (2.32.3+dfsg-1) ... Selecting previously unselected package python3-requests-file. Preparing to unpack .../25-python3-requests-file_2.0.0-1_all.deb ... Unpacking python3-requests-file (2.0.0-1) ... Selecting previously unselected package python3-colorama. Preparing to unpack .../26-python3-colorama_0.4.6-4_all.deb ... Unpacking python3-colorama (0.4.6-4) ... Selecting previously unselected package python3-click. Preparing to unpack .../27-python3-click_8.1.7-2_all.deb ... Unpacking python3-click (8.1.7-2) ... Selecting previously unselected package python3-bel-resources. Preparing to unpack .../28-python3-bel-resources_0.0.3-4_all.deb ... Unpacking python3-bel-resources (0.0.3-4) ... Selecting previously unselected package python3-pydantic-core. Preparing to unpack .../29-python3-pydantic-core_2.27.1-1_amd64.deb ... Unpacking python3-pydantic-core (2.27.1-1) ... Selecting previously unselected package python3-dnspython. Preparing to unpack .../30-python3-dnspython_2.6.1-1_all.deb ... Unpacking python3-dnspython (2.6.1-1) ... Selecting previously unselected package python3-email-validator. Preparing to unpack .../31-python3-email-validator_2.2.0-1_all.deb ... Unpacking python3-email-validator (2.2.0-1) ... Selecting previously unselected package python3-pydantic. Preparing to unpack .../32-python3-pydantic_2.10.2-1_amd64.deb ... Unpacking python3-pydantic (2.10.2-1) ... Selecting previously unselected package python3-sortedcontainers. Preparing to unpack .../33-python3-sortedcontainers_2.4.0-2_all.deb ... Unpacking python3-sortedcontainers (2.4.0-2) ... Selecting previously unselected package python3-trie. Preparing to unpack .../34-python3-trie_0.4.0+ds-1_all.deb ... Unpacking python3-trie (0.4.0+ds-1) ... Selecting previously unselected package python3-curies. Preparing to unpack .../35-python3-curies_0.9.0-1_all.deb ... Unpacking python3-curies (0.9.0-1) ... Selecting previously unselected package python3-tqdm. Preparing to unpack .../36-python3-tqdm_4.67.1-1_all.deb ... Unpacking python3-tqdm (4.67.1-1) ... Selecting previously unselected package python3-pystow. Preparing to unpack .../37-python3-pystow_0.5.5-1_all.deb ... Unpacking python3-pystow (0.5.5-1) ... Selecting previously unselected package python3-bioregistry. Preparing to unpack .../38-python3-bioregistry_0.11.12-3_all.deb ... Unpacking python3-bioregistry (0.11.12-3) ... Selecting previously unselected package python3-click-plugins. Preparing to unpack .../39-python3-click-plugins_1.1.1-4_all.deb ... Unpacking python3-click-plugins (1.1.1-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../40-python3-dateutil_2.9.0-3_all.deb ... Unpacking python3-dateutil (2.9.0-3) ... Selecting previously unselected package python3-greenlet. Preparing to unpack .../41-python3-greenlet_3.1.0-1+b1_amd64.deb ... Unpacking python3-greenlet (3.1.0-1+b1) ... Selecting previously unselected package python3-humanize. Preparing to unpack .../42-python3-humanize_4.11.0-1_all.deb ... Unpacking python3-humanize (4.11.0-1) ... Selecting previously unselected package python3-rpds-py. Preparing to unpack .../43-python3-rpds-py_0.21.0-2_amd64.deb ... Unpacking python3-rpds-py (0.21.0-2) ... Selecting previously unselected package python3-referencing. Preparing to unpack .../44-python3-referencing_0.35.1-1_all.deb ... Unpacking python3-referencing (0.35.1-1) ... Selecting previously unselected package python3-jsonschema-specifications. Preparing to unpack .../45-python3-jsonschema-specifications_2023.12.1-2_all.deb ... Unpacking python3-jsonschema-specifications (2023.12.1-2) ... Selecting previously unselected package python3-jsonschema. Preparing to unpack .../46-python3-jsonschema_4.19.2-5_all.deb ... Unpacking python3-jsonschema (4.19.2-5) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../47-python3-networkx_3.2.1-5_all.deb ... Unpacking python3-networkx (3.2.1-5) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../48-python3-numpy_1%3a1.26.4+ds-12_amd64.deb ... Unpacking python3-numpy (1:1.26.4+ds-12) ... Selecting previously unselected package python3-tz. Preparing to unpack .../49-python3-tz_2024.1-2_all.deb ... Unpacking python3-tz (2024.1-2) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../50-python3-pandas-lib_2.2.3+dfsg-5+b1_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../51-python3-pandas_2.2.3+dfsg-5_all.deb ... Unpacking python3-pandas (2.2.3+dfsg-5) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../52-python3-pyparsing_3.1.2-1_all.deb ... Unpacking python3-pyparsing (3.1.2-1) ... Selecting previously unselected package python3-ratelimit. Preparing to unpack .../53-python3-ratelimit_2.2.1-2_all.deb ... Unpacking python3-ratelimit (2.2.1-2) ... Selecting previously unselected package python3-sqlalchemy. Preparing to unpack .../54-python3-sqlalchemy_2.0.32+ds1-1_all.deb ... Unpacking python3-sqlalchemy (2.0.32+ds1-1) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../55-python3-tabulate_0.9.0-1_all.deb ... Unpacking python3-tabulate (0.9.0-1) ... Selecting previously unselected package python3-pybel. Preparing to unpack .../56-python3-pybel_0.15.5-1_all.deb ... Unpacking python3-pybel (0.15.5-1) ... Setting up media-types (10.1.0) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjs-d3 (3.5.17-4) ... Setting up libncursesw6:amd64 (6.5-2+b1) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-sortedcontainers (2.4.0-2) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-annotated-types (0.7.0-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-multisplitby (0.0.1-6) ... Setting up python3-greenlet (3.1.0-1+b1) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.2.3-3) ... Setting up python3-rpds-py (0.21.0-2) ... Setting up python3-dnspython (2.6.1-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-email-validator (2.2.0-1) ... Setting up python3-trie (0.4.0+ds-1) ... Setting up python3-ratelimit (2.2.1-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-pydantic-core (2.27.1-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-tqdm (4.67.1-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-click (8.1.7-2) ... Setting up python3-sqlalchemy (2.0.32+ds1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pydantic (2.10.2-1) ... Setting up python3-click-plugins (1.1.1-4) ... Setting up python3-curies (0.9.0-1) ... Setting up python3-referencing (0.35.1-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-pystow (0.5.5-1) ... Setting up python3-requests-file (2.0.0-1) ... Setting up python3-humanize (4.11.0-1) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Setting up python3-bioregistry (0.11.12-3) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-bel-resources (0.0.3-4) ... Setting up python3-jsonschema (4.19.2-5) ... Setting up python3-pybel (0.15.5-1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-get', '-y', 'install', 'python3-pybel=0.15.5-1'] 0m43.0s INFO: Running scripts post_install 0m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_install_exceptions'] 0m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_install_exceptions'] 0m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_install_log_alternatives'] 0m43.0s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=python3-pybel=0.15.5-1: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=python3-pybel=0.15.5-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=python3-pybel=0.15.5-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 0m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_install_log_alternatives'] 0m43.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi'] 0m44.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi'] 0m45.8s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js (python3-networkx) 0m46.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', '-ac', '--ignore-obsolete'] 0m48.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', '-ac', '--ignore-obsolete'] 0m48.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m48.3s DUMP: 0.15.6 0m48.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m48.3s INFO: Running adequate version 0.15.6 now. 0m48.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'python3-pybel'] 0m48.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'python3-pybel'] 0m48.4s INFO: Running scripts pre_remove 0m48.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m48.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m48.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m48.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m48.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m49.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m49.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m49.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m49.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m49.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m49.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_remove_exceptions'] 0m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/pre_remove_exceptions'] 0m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m50.0s DUMP: install ok installed apt apt 2.9.16 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-11 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1+b1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-8 install ok installed gpgv gpgv 2.2.45-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.16 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libblas3:amd64 libblas3 3.12.0-4 install ok installed libblkid1:amd64 libblkid1 2.40.2-11 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.273 install ok installed libexpat1:amd64 libexpat1 2.6.4-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-8 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-3 install ok installed liblapack3:amd64 liblapack3 3.12.0-4 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-11 install ok installed libncursesw6:amd64 libncursesw6 6.5-2+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-4 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.12.6-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.7-3 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.7-3 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-11 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.1-1+b1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-8 install ok installed libsystemd0:amd64 libsystemd0 257~rc3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3+b1 install ok installed libudev1:amd64 libudev1 257~rc3-1 install ok installed libunistring5:amd64 libunistring5 1.2-1+b1 install ok installed libuuid1:amd64 libuuid1 2.40.2-11 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-11 install ok installed login.defs login.defs 1:4.16.0-5 install ok installed logsave logsave 1.47.1-1+b1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40.2-11 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.3.2-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-5 install ok installed perl-base perl-base 5.40.0-8 install ok installed python3 python3 3.12.6-1 install ok installed python3-annotated-types python3-annotated-types 0.7.0-1 install ok installed python3-attr python3-attr 23.2.0-2 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-bel-resources python3-bel-resources 0.0.3-4 install ok installed python3-bioregistry python3-bioregistry 0.11.12-3 install ok installed python3-certifi python3-certifi 2024.8.30+dfsg-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.0-1+b1 install ok installed python3-click python3-click 8.1.7-2 install ok installed python3-click-plugins python3-click-plugins 1.1.1-4 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-curies python3-curies 0.9.0-1 install ok installed python3-dateutil python3-dateutil 2.9.0-3 install ok installed python3-dnspython python3-dnspython 2.6.1-1 install ok installed python3-email-validator python3-email-validator 2.2.0-1 install ok installed python3-greenlet python3-greenlet 3.1.0-1+b1 install ok installed python3-humanize python3-humanize 4.11.0-1 install ok installed python3-idna python3-idna 3.8-2 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.0-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jsonschema python3-jsonschema 4.19.2-5 install ok installed python3-jsonschema-specifications python3-jsonschema-specifications 2023.12.1-2 install ok installed python3-minimal python3-minimal 3.12.6-1 install ok installed python3-more-itertools python3-more-itertools 10.5.0-1 install ok installed python3-multisplitby python3-multisplitby 0.0.1-6 install ok installed python3-networkx python3-networkx 3.2.1-5 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-12 install ok installed python3-pandas python3-pandas 2.2.3+dfsg-5 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.2.3+dfsg-5+b1 install ok installed python3-pkg-resources python3-pkg-resources 74.1.2-2 install ok installed python3-pybel python3-pybel 0.15.5-1 install ok installed python3-pydantic python3-pydantic 2.10.2-1 install ok installed python3-pydantic-core python3-pydantic-core 2.27.1-1 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-pystow python3-pystow 0.5.5-1 install ok installed python3-ratelimit python3-ratelimit 2.2.1-2 install ok installed python3-referencing python3-referencing 0.35.1-1 install ok installed python3-requests python3-requests 2.32.3+dfsg-1 install ok installed python3-requests-file python3-requests-file 2.0.0-1 install ok installed python3-rpds-py python3-rpds-py 0.21.0-2 install ok installed python3-sortedcontainers python3-sortedcontainers 2.4.0-2 install ok installed python3-sqlalchemy python3-sqlalchemy 2.0.32+ds1-1 install ok installed python3-tabulate python3-tabulate 0.9.0-1 install ok installed python3-tqdm python3-tqdm 4.67.1-1 install ok installed python3-trie python3-trie 0.4.0+ds-1 install ok installed python3-typeguard python3-typeguard 4.4.1-1 install ok installed python3-typing-extensions python3-typing-extensions 4.12.2-2 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-urllib3 python3-urllib3 2.2.3-3 install ok installed python3.12 python3.12 3.12.7-3 install ok installed python3.12-minimal python3.12-minimal 3.12.7-3 install ok installed readline-common readline-common 8.2-5 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-11 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-get', 'remove', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libjs-d3', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-autocommand', 'python3-bel-resources', 'python3-bioregistry', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-click-plugins', 'python3-colorama', 'python3-curies', 'python3-dateutil', 'python3-dnspython', 'python3-email-validator', 'python3-greenlet', 'python3-humanize', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-minimal', 'python3-more-itertools', 'python3-multisplitby', 'python3-networkx', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pydantic-core', 'python3-pyparsing', 'python3-pystow', 'python3-ratelimit', 'python3-referencing', 'python3-requests', 'python3-requests-file', 'python3-rpds-py', 'python3-sortedcontainers', 'python3-sqlalchemy', 'python3-tabulate', 'python3-tqdm', 'python3-trie', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.12', 'python3.12-minimal', 'readline-common', 'python3-pybel'] 0m56.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates libblas3 libexpat1 libgfortran5 libgssapi-krb5-2 libjs-d3 libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libncursesw6 libnsl2 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8t64 libsqlite3-0 libtirpc-common libtirpc3t64 media-types netbase openssl python3 python3-annotated-types python3-attr python3-autocommand python3-bel-resources python3-bioregistry python3-certifi python3-chardet python3-charset-normalizer python3-click python3-click-plugins python3-colorama python3-curies python3-dateutil python3-dnspython python3-email-validator python3-greenlet python3-humanize python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jsonschema python3-jsonschema-specifications python3-minimal python3-more-itertools python3-multisplitby python3-networkx python3-numpy python3-pandas python3-pandas-lib python3-pkg-resources python3-pybel python3-pydantic python3-pydantic-core python3-pyparsing python3-pystow python3-ratelimit python3-referencing python3-requests python3-requests-file python3-rpds-py python3-sortedcontainers python3-sqlalchemy python3-tabulate python3-tqdm python3-trie python3-typeguard python3-typing-extensions python3-tz python3-urllib3 python3.12 python3.12-minimal readline-common 0 upgraded, 0 newly installed, 78 to remove and 0 not upgraded. After this operation, 290 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14719 files and directories currently installed.) Removing python3-pybel (0.15.5-1) ... Removing python3-bel-resources (0.0.3-4) ... Removing python3-requests-file (2.0.0-1) ... Removing python3-bioregistry (0.11.12-3) ... Removing python3-pystow (0.5.5-1) ... Removing python3-requests (2.32.3+dfsg-1) ... Removing python3-certifi (2024.8.30+dfsg-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-pandas (2.2.3+dfsg-5) ... Removing python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Removing python3-numpy (1:1.26.4+ds-12) ... Removing liblapack3:amd64 (3.12.0-4) ... Removing libblas3:amd64 (3.12.0-4) ... Removing python3-jsonschema (4.19.2-5) ... Removing python3-jsonschema-specifications (2023.12.1-2) ... Removing python3-referencing (0.35.1-1) ... Removing python3-rpds-py (0.21.0-2) ... Removing python3-tqdm (4.67.1-1) ... Removing python3-sqlalchemy (2.0.32+ds1-1) ... Removing python3-greenlet (3.1.0-1+b1) ... Removing python3-curies (0.9.0-1) ... Removing python3-trie (0.4.0+ds-1) ... Removing python3-sortedcontainers (2.4.0-2) ... Removing python3-humanize (4.11.0-1) ... Removing libgfortran5:amd64 (14.2.0-8) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing python3-pydantic (2.10.2-1) ... Removing python3-email-validator (2.2.0-1) ... Removing python3-dnspython (2.6.1-1) ... Removing openssl (3.3.2-2) ... Removing python3-annotated-types (0.7.0-1) ... Removing python3-attr (23.2.0-2) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.4.0-1+b1) ... Removing python3-click-plugins (1.1.1-4) ... Removing python3-click (8.1.7-2) ... Removing python3-colorama (0.4.6-4) ... Removing python3-dateutil (2.9.0-3) ... Removing python3-idna (3.8-2) ... Removing python3-multisplitby (0.0.1-6) ... Removing python3-networkx (3.2.1-5) ... Removing python3-pydantic-core (2.27.1-1) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-ratelimit (2.2.1-2) ... Removing python3-tabulate (0.9.0-1) ... Removing python3-tz (2024.1-2) ... Removing python3-urllib3 (2.2.3-3) ... Removing python3-pkg-resources (74.1.2-2) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-inflect (7.3.1-2) ... Removing python3-jaraco.context (6.0.0-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.5.0-1) ... Removing python3-typeguard (4.4.1-1) ... Removing python3-typing-extensions (4.12.2-2) ... Removing python3 (3.12.6-1) ... Removing python3.12 (3.12.7-3) ... Removing python3-minimal (3.12.6-1) ... Removing python3.12-minimal (3.12.7-3) ... Removing libexpat1:amd64 (2.6.4-1) ... Removing libpython3-stdlib:amd64 (3.12.6-1) ... Removing libpython3.12-stdlib:amd64 (3.12.7-3) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-3+b3) ... Removing libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-3) ... Removing libkrb5-3:amd64 (1.21.3-3) ... Removing libk5crypto3:amd64 (1.21.3-3) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-3) ... Removing libncursesw6:amd64 (6.5-2+b1) ... Removing libpython3.12-minimal:amd64 (3.12.7-3) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-5) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libtirpc-common (1.3.4+ds-1.3) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-5) ... Processing triggers for libc-bin (2.40-3) ... 0m56.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-get', 'remove', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libjs-d3', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-autocommand', 'python3-bel-resources', 'python3-bioregistry', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-click-plugins', 'python3-colorama', 'python3-curies', 'python3-dateutil', 'python3-dnspython', 'python3-email-validator', 'python3-greenlet', 'python3-humanize', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-minimal', 'python3-more-itertools', 'python3-multisplitby', 'python3-networkx', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pydantic-core', 'python3-pyparsing', 'python3-pystow', 'python3-ratelimit', 'python3-referencing', 'python3-requests', 'python3-requests-file', 'python3-rpds-py', 'python3-sortedcontainers', 'python3-sqlalchemy', 'python3-tabulate', 'python3-tqdm', 'python3-trie', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.12', 'python3.12-minimal', 'readline-common', 'python3-pybel'] 0m56.7s INFO: Running scripts post_remove 0m56.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_remove_exceptions'] 0m56.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_remove_exceptions'] 0m56.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg', '--purge', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libjs-d3', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-autocommand', 'python3-bel-resources', 'python3-bioregistry', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-click-plugins', 'python3-colorama', 'python3-curies', 'python3-dateutil', 'python3-dnspython', 'python3-email-validator', 'python3-greenlet', 'python3-humanize', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-minimal', 'python3-more-itertools', 'python3-multisplitby', 'python3-networkx', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pydantic-core', 'python3-pyparsing', 'python3-pystow', 'python3-ratelimit', 'python3-referencing', 'python3-requests', 'python3-requests-file', 'python3-rpds-py', 'python3-sortedcontainers', 'python3-sqlalchemy', 'python3-tabulate', 'python3-tqdm', 'python3-trie', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.12', 'python3.12-minimal', 'readline-common'] 0m56.9s DUMP: (Reading database ... 5163 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-3) ... dpkg: warning: ignoring request to remove libjs-d3 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.7-3) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-5) ... dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1.3) ... Purging configuration files for libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.3.2-2) ... Purging configuration files for python3 (3.12.6-1) ... dpkg: warning: ignoring request to remove python3-annotated-types which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-bel-resources which isn't installed dpkg: warning: ignoring request to remove python3-bioregistry which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-click-plugins which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-curies which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-dnspython which isn't installed dpkg: warning: ignoring request to remove python3-email-validator which isn't installed dpkg: warning: ignoring request to remove python3-greenlet which isn't installed dpkg: warning: ignoring request to remove python3-humanize which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed Purging configuration files for python3-jsonschema (4.19.2-5) ... dpkg: warning: ignoring request to remove python3-jsonschema-specifications which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-multisplitby which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pydantic which isn't installed dpkg: warning: ignoring request to remove python3-pydantic-core which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pystow which isn't installed dpkg: warning: ignoring request to remove python3-ratelimit which isn't installed dpkg: warning: ignoring request to remove python3-referencing which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-requests-file which isn't installed dpkg: warning: ignoring request to remove python3-rpds-py which isn't installed dpkg: warning: ignoring request to remove python3-sortedcontainers which isn't installed dpkg: warning: ignoring request to remove python3-sqlalchemy which isn't installed dpkg: warning: ignoring request to remove python3-tabulate which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-trie which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.7-3) ... Purging configuration files for readline-common (8.2-5) ... 0m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg', '--purge', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libjs-d3', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-annotated-types', 'python3-attr', 'python3-autocommand', 'python3-bel-resources', 'python3-bioregistry', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-click-plugins', 'python3-colorama', 'python3-curies', 'python3-dateutil', 'python3-dnspython', 'python3-email-validator', 'python3-greenlet', 'python3-humanize', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-minimal', 'python3-more-itertools', 'python3-multisplitby', 'python3-networkx', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pydantic-core', 'python3-pyparsing', 'python3-pystow', 'python3-ratelimit', 'python3-referencing', 'python3-requests', 'python3-requests-file', 'python3-rpds-py', 'python3-sortedcontainers', 'python3-sqlalchemy', 'python3-tabulate', 'python3-tqdm', 'python3-trie', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.12', 'python3.12-minimal', 'readline-common'] 0m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg', '--purge', 'python3-pybel'] 0m56.9s DUMP: dpkg: warning: ignoring request to remove python3-pybel which isn't installed 0m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg', '--purge', 'python3-pybel'] 0m56.9s INFO: Running scripts post_purge 0m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_purge_exceptions'] 0m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_purge_exceptions'] 0m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg', '--purge', '--pending'] 0m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg', '--purge', '--pending'] 0m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg', '--remove', '--pending'] 0m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg', '--remove', '--pending'] 0m57.0s INFO: Running scripts post_test 0m57.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_test_exceptions'] 0m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'tmp/scripts/post_test_exceptions'] 0m57.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi'] 0m57.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi'] 0m57.9s DEBUG: No broken symlinks as far as we can find. 0m57.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg-divert', '--list'] 0m57.9s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m57.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'dpkg-divert', '--list'] 0m57.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-get', 'clean'] 0m57.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi', 'apt-get', 'clean'] 0m57.9s DEBUG: Recording chroot state 0m58.4s INFO: PASS: Installation and purging test. 0m58.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/shm'] 0m58.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/shm'] 0m58.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/console'] 0m58.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/console'] 0m58.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/ptmx'] 0m58.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/ptmx'] 0m58.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/pts'] 0m58.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/dev/pts'] 0m58.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/proc'] 0m58.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi/proc'] 0m58.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi'] 0m58.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphl1m0_gi'] 0m58.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmphl1m0_gi 0m58.9s INFO: PASS: All tests. 0m58.9s INFO: piuparts run ends. ret=0 End: 2024-12-05 03:58:32 GMT