Start: 2025-08-11 20:51:40 GMT [trixie] Package: metaphlan2-data Version: 2.6.0+ds-4 Installed-Size: 753107 Maintainer: Debian Med Packaging Team Architecture: all Depends: debconf (>= 0.5) | debconf-2.0, bowtie2 Description: data package for Metagenomic Phylogenetic Analysis Homepage: https://bitbucket.org/biobakery/metaphlan2 Description-md5: f0775409e41de9fba49cda4590c73ce4 Section: science Priority: optional Filename: pool/main/m/metaphlan2-data/metaphlan2-data_2.6.0+ds-4_all.deb Size: 204323768 MD5sum: de685246213a02dcedfee6e464f7ac11 SHA256: f38a6e3f49d7b03ba80d9fdd5647b9f9f2dfb38d43b28618053e8ef2c60db7d7 [trixie-next] Package: metaphlan2-data Version: 2.6.0+ds-4 Installed-Size: 753107 Maintainer: Debian Med Packaging Team Architecture: all Depends: debconf (>= 0.5) | debconf-2.0, bowtie2 Description: data package for Metagenomic Phylogenetic Analysis Homepage: https://bitbucket.org/biobakery/metaphlan2 Description-md5: f0775409e41de9fba49cda4590c73ce4 Section: science Priority: optional Filename: pool/main/m/metaphlan2-data/metaphlan2-data_2.6.0+ds-4_all.deb Size: 204323768 MD5sum: de685246213a02dcedfee6e464f7ac11 SHA256: f38a6e3f49d7b03ba80d9fdd5647b9f9f2dfb38d43b28618053e8ef2c60db7d7 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie -d trixie-next -B /srv/piuparts.debian.org/slave/refchroot/trixie2next/reference-chroot-metadata.dat --apt metaphlan2-data=2.6.0+ds-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508101417~1.6.0-7-g17c4ea32 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie -d trixie-next -B /srv/piuparts.debian.org/slave/refchroot/trixie2next/reference-chroot-metadata.dat --apt metaphlan2-data=2.6.0+ds-4 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpeyvc5rgc 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpeyvc5rgc 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpeyvc5rgc/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', 'update'] 0m1.3s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [138 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9668 kB] Fetched 9805 kB in 1s (14.6 MB/s) Reading package lists... 0m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', 'update'] 0m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', '-yf', 'dist-upgrade'] 0m1.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', '-yf', 'dist-upgrade'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.8s DUMP: 8fc0def95551deb38dc214d6c9cce720 - 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.8s INFO: Running scripts post_setup 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_setup_dummy_users'] 0m2.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_setup_dummy_users'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_setup_forbid_home'] 0m2.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_setup_forbid_home'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_setup_minimize'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_setup_minimize'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_setup_zz_backports'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_setup_zz_backports'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.3s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.7-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.7-1 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-4 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/trixie2next/reference-chroot-metadata.dat 0m2.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc'] 0m2.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc'] 0m2.5s INFO: Running scripts is_testable 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/is_testable_uninstallable'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/is_testable_uninstallable'] 0m2.5s INFO: Running scripts pre_test 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_test_exceptions'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_test_exceptions'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_test_root_password'] 0m2.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_test_root_password'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'show', '--no-all-versions', 'metaphlan2-data'] 0m2.7s DUMP: Package: metaphlan2-data Version: 2.6.0+ds-4 Installed-Size: 753107 Maintainer: Debian Med Packaging Team Architecture: all Depends: debconf (>= 0.5) | debconf-2.0, bowtie2 Description-en: data package for Metagenomic Phylogenetic Analysis MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution. From version 2.0, MetaPhlAn is also able to identify specific strains (in the not-so-frequent cases in which the sample contains a previously sequenced strains) and to track strains across samples for all species. . MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the marker information file can be found at src/utils/markers_info.txt.bz2 or here) identified from ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing: . * unambiguous taxonomic assignments; * accurate estimation of organismal relative abundance; * species-level resolution for bacteria, archaea, eukaryotes and viruses; * strain identification and tracking * orders of magnitude speedups compared to existing methods. * metagenomic strain-level population genomics . This package contains the data for metaphlan2. Description-md5: f0775409e41de9fba49cda4590c73ce4 Homepage: https://bitbucket.org/biobakery/metaphlan2 Section: science Priority: optional Filename: pool/main/m/metaphlan2-data/metaphlan2-data_2.6.0+ds-4_all.deb Size: 204323768 MD5sum: de685246213a02dcedfee6e464f7ac11 SHA256: f38a6e3f49d7b03ba80d9fdd5647b9f9f2dfb38d43b28618053e8ef2c60db7d7 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'show', '--no-all-versions', 'metaphlan2-data'] 0m2.7s INFO: apt-cache knows about the following packages: metaphlan2-data 0m2.7s INFO: Running scripts pre_install 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_database-server'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_database-server'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_exceptions'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_exceptions'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_extras'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_extras'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'policy'] 0m2.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.0,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'policy'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'policy', 'metaphlan2-data'] 0m2.7s DUMP: metaphlan2-data: Installed: (none) Candidate: 2.6.0+ds-4 Version table: 2.6.0+ds-4 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'policy', 'metaphlan2-data'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', '-y', 'install', 'metaphlan2-data'] 8m27.6s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: bowtie2 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libncursesw6 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 media-types netbase perl perl-modules-5.40 python3 python3-minimal python3.13 python3.13-minimal readline-common Suggested packages: bowtie2-examples gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binutils binfmt-support readline-doc Recommended packages: libgpm2 ca-certificates The following NEW packages will be installed: bowtie2 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libncursesw6 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 media-types metaphlan2-data netbase perl perl-modules-5.40 python3 python3-minimal python3.13 python3.13-minimal readline-common 0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded. Need to get 220 MB of archives. After this operation, 853 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libperl5.40 amd64 5.40.1-6 [4341 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.40.1-6 [267 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 bowtie2 amd64 2.5.4-1+b2 [1505 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 metaphlan2-data all 2.6.0+ds-4 [204 MB] Preconfiguring packages ... Fetched 220 MB in 7s (31.7 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4938 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-2_amd64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Setting up libpython3.13-minimal:amd64 (3.13.5-2) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5272 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_amd64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../3-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../4-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_amd64.deb ... Unpacking python3.13 (3.13.5-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5780 files and directories currently installed.) Preparing to unpack .../0-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package perl-modules-5.40. Preparing to unpack .../1-perl-modules-5.40_5.40.1-6_all.deb ... Unpacking perl-modules-5.40 (5.40.1-6) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../2-libgdbm6t64_1.24-2_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.24-2) ... Selecting previously unselected package libgdbm-compat4t64:amd64. Preparing to unpack .../3-libgdbm-compat4t64_1.24-2_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.24-2) ... Selecting previously unselected package libperl5.40:amd64. Preparing to unpack .../4-libperl5.40_5.40.1-6_amd64.deb ... Unpacking libperl5.40:amd64 (5.40.1-6) ... Selecting previously unselected package perl. Preparing to unpack .../5-perl_5.40.1-6_amd64.deb ... Unpacking perl (5.40.1-6) ... Selecting previously unselected package bowtie2. Preparing to unpack .../6-bowtie2_2.5.4-1+b2_amd64.deb ... Unpacking bowtie2 (2.5.4-1+b2) ... Selecting previously unselected package metaphlan2-data. Preparing to unpack .../7-metaphlan2-data_2.6.0+ds-4_all.deb ... Unpacking metaphlan2-data (2.6.0+ds-4) ... Setting up media-types (13.0.0) ... Setting up libgdbm6t64:amd64 (1.24-2) ... Setting up libgdbm-compat4t64:amd64 (1.24-2) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up perl-modules-5.40 (5.40.1-6) ... Setting up netbase (6.5) ... Setting up readline-common (8.2-6) ... Setting up libperl5.40:amd64 (5.40.1-6) ... Setting up perl (5.40.1-6) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3.13 (3.13.5-2) ... Setting up python3 (3.13.5-1) ... Setting up bowtie2 (2.5.4-1+b2) ... Setting up metaphlan2-data (2.6.0+ds-4) ... Settings: Output files: "/usr/share/metaphlan2/db_v20/mpa_v20_m200.*.bt2" Line rate: 6 (line is 64 bytes) Lines per side: 1 (side is 64 bytes) Offset rate: 4 (one in 16) FTable chars: 10 Strings: unpacked Max bucket size: default Max bucket size, sqrt multiplier: default Max bucket size, len divisor: 4 Difference-cover sample period: 1024 Endianness: little Actual local endianness: little Sanity checking: disabled Assertions: disabled Random seed: 0 Sizeofs: void*:8, int:4, long:8, size_t:8 Input files DNA, FASTA: /var/lib/metaphlan2-data/markers.fasta Building a SMALL index Reading reference sizes Time reading reference sizes: 00:00:03 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time to join reference sequences: 00:00:02 bmax according to bmaxDivN setting: 177889396 Using parameters --bmax 133417047 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 133417047 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples V-Sorting samples time: 00:00:06 Allocating rank array Ranking v-sort output Ranking v-sort output time: 00:00:02 Invoking Larsson-Sadakane on ranks Invoking Larsson-Sadakane on ranks time: 00:00:05 Sanity-checking and returning Building samples Reserving space for 12 sample suffixes Generating random suffixes QSorting 12 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 12 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 7; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 1; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 0; iterating... Splitting and merging Splitting and merging time: 00:00:00 Avg bucket size: 1.01651e+08 (target: 133417046) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 7 Reserving size (133417047) for bucket 1 Calculating Z arrays for bucket 1 Entering block accumulator loop for bucket 1: bucket 1: 10% bucket 1: 20% bucket 1: 30% bucket 1: 40% bucket 1: 50% bucket 1: 60% bucket 1: 70% bucket 1: 80% bucket 1: 90% bucket 1: 100% Sorting block of length 73481450 for bucket 1 (Using difference cover) Sorting block time: 00:00:11 Returning block of 73481451 for bucket 1 Getting block 2 of 7 Reserving size (133417047) for bucket 2 Calculating Z arrays for bucket 2 Entering block accumulator loop for bucket 2: bucket 2: 10% bucket 2: 20% bucket 2: 30% bucket 2: 40% bucket 2: 50% bucket 2: 60% bucket 2: 70% bucket 2: 80% bucket 2: 90% bucket 2: 100% Sorting block of length 112624089 for bucket 2 (Using difference cover) Sorting block time: 00:00:17 Returning block of 112624090 for bucket 2 Getting block 3 of 7 Reserving size (133417047) for bucket 3 Calculating Z arrays for bucket 3 Entering block accumulator loop for bucket 3: bucket 3: 10% bucket 3: 20% bucket 3: 30% bucket 3: 40% bucket 3: 50% bucket 3: 60% bucket 3: 70% bucket 3: 80% bucket 3: 90% bucket 3: 100% Sorting block of length 114872559 for bucket 3 (Using difference cover) Sorting block time: 00:00:17 Returning block of 114872560 for bucket 3 Getting block 4 of 7 Reserving size (133417047) for bucket 4 Calculating Z arrays for bucket 4 Entering block accumulator loop for bucket 4: bucket 4: 10% bucket 4: 20% bucket 4: 30% bucket 4: 40% bucket 4: 50% bucket 4: 60% bucket 4: 70% bucket 4: 80% bucket 4: 90% bucket 4: 100% Sorting block of length 96915131 for bucket 4 (Using difference cover) Sorting block time: 00:00:14 Returning block of 96915132 for bucket 4 Getting block 5 of 7 Reserving size (133417047) for bucket 5 Calculating Z arrays for bucket 5 Entering block accumulator loop for bucket 5: bucket 5: 10% bucket 5: 20% bucket 5: 30% bucket 5: 40% bucket 5: 50% bucket 5: 60% bucket 5: 70% bucket 5: 80% bucket 5: 90% bucket 5: 100% Sorting block of length 110535719 for bucket 5 (Using difference cover) Sorting block time: 00:00:16 Returning block of 110535720 for bucket 5 Getting block 6 of 7 Reserving size (133417047) for bucket 6 Calculating Z arrays for bucket 6 Entering block accumulator loop for bucket 6: bucket 6: 10% bucket 6: 20% bucket 6: 30% bucket 6: 40% bucket 6: 50% bucket 6: 60% bucket 6: 70% bucket 6: 80% bucket 6: 90% bucket 6: 100% Sorting block of length 79173124 for bucket 6 (Using difference cover) Sorting block time: 00:00:12 Returning block of 79173125 for bucket 6 Getting block 7 of 7 Reserving size (133417047) for bucket 7 Calculating Z arrays for bucket 7 Entering block accumulator loop for bucket 7: bucket 7: 10% bucket 7: 20% bucket 7: 30% bucket 7: 40% bucket 7: 50% bucket 7: 60% bucket 7: 70% bucket 7: 80% bucket 7: 90% bucket 7: 100% Sorting block of length 123955509 for bucket 7 (Using difference cover) Sorting block time: 00:00:19 Returning block of 123955510 for bucket 7 Exited Ebwt loop fchr[A]: 0 fchr[C]: 193247476 fchr[G]: 355349181 fchr[T]: 534730948 fchr[$]: 711557587 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 304203219 bytes to primary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.1.bt2.tmp Wrote 177889404 bytes to secondary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.2.bt2.tmp Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 711557587 bwtLen: 711557588 sz: 177889397 bwtSz: 177889397 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 44472350 offsSz: 177889400 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 3706030 numLines: 3706030 ebwtTotLen: 237185920 ebwtTotSz: 237185920 color: 0 reverse: 0 Total time for call to driver() for forward index: 00:04:17 Reading reference sizes Time reading reference sizes: 00:00:05 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time to join reference sequences: 00:00:01 Time to reverse reference sequence: 00:00:01 bmax according to bmaxDivN setting: 177889396 Using parameters --bmax 133417047 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 133417047 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples V-Sorting samples time: 00:00:06 Allocating rank array Ranking v-sort output Ranking v-sort output time: 00:00:02 Invoking Larsson-Sadakane on ranks Invoking Larsson-Sadakane on ranks time: 00:00:05 Sanity-checking and returning Building samples Reserving space for 12 sample suffixes Generating random suffixes QSorting 12 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 12 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 6; iterating... Splitting and merging Splitting and merging time: 00:00:00 Avg bucket size: 1.01651e+08 (target: 133417046) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 7 Reserving size (133417047) for bucket 1 Calculating Z arrays for bucket 1 Entering block accumulator loop for bucket 1: bucket 1: 10% bucket 1: 20% bucket 1: 30% bucket 1: 40% bucket 1: 50% bucket 1: 60% bucket 1: 70% bucket 1: 80% bucket 1: 90% bucket 1: 100% Sorting block of length 91718666 for bucket 1 (Using difference cover) Sorting block time: 00:00:14 Returning block of 91718667 for bucket 1 Getting block 2 of 7 Reserving size (133417047) for bucket 2 Calculating Z arrays for bucket 2 Entering block accumulator loop for bucket 2: bucket 2: 10% bucket 2: 20% bucket 2: 30% bucket 2: 40% bucket 2: 50% bucket 2: 60% bucket 2: 70% bucket 2: 80% bucket 2: 90% bucket 2: 100% Sorting block of length 107401525 for bucket 2 (Using difference cover) Sorting block time: 00:00:16 Returning block of 107401526 for bucket 2 Getting block 3 of 7 Reserving size (133417047) for bucket 3 Calculating Z arrays for bucket 3 Entering block accumulator loop for bucket 3: bucket 3: 10% bucket 3: 20% bucket 3: 30% bucket 3: 40% bucket 3: 50% bucket 3: 60% bucket 3: 70% bucket 3: 80% bucket 3: 90% bucket 3: 100% Sorting block of length 113723363 for bucket 3 (Using difference cover) Sorting block time: 00:00:16 Returning block of 113723364 for bucket 3 Getting block 4 of 7 Reserving size (133417047) for bucket 4 Calculating Z arrays for bucket 4 Entering block accumulator loop for bucket 4: bucket 4: 10% bucket 4: 20% bucket 4: 30% bucket 4: 40% bucket 4: 50% bucket 4: 60% bucket 4: 70% bucket 4: 80% bucket 4: 90% bucket 4: 100% Sorting block of length 95758918 for bucket 4 (Using difference cover) Sorting block time: 00:00:14 Returning block of 95758919 for bucket 4 Getting block 5 of 7 Reserving size (133417047) for bucket 5 Calculating Z arrays for bucket 5 Entering block accumulator loop for bucket 5: bucket 5: 10% bucket 5: 20% bucket 5: 30% bucket 5: 40% bucket 5: 50% bucket 5: 60% bucket 5: 70% bucket 5: 80% bucket 5: 90% bucket 5: 100% Sorting block of length 104659734 for bucket 5 (Using difference cover) Sorting block time: 00:00:16 Returning block of 104659735 for bucket 5 Getting block 6 of 7 Reserving size (133417047) for bucket 6 Calculating Z arrays for bucket 6 Entering block accumulator loop for bucket 6: bucket 6: 10% bucket 6: 20% bucket 6: 30% bucket 6: 40% bucket 6: 50% bucket 6: 60% bucket 6: 70% bucket 6: 80% bucket 6: 90% bucket 6: 100% Sorting block of length 116767199 for bucket 6 (Using difference cover) Sorting block time: 00:00:17 Returning block of 116767200 for bucket 6 Getting block 7 of 7 Reserving size (133417047) for bucket 7 Calculating Z arrays for bucket 7 Entering block accumulator loop for bucket 7: bucket 7: 10% bucket 7: 20% bucket 7: 30% bucket 7: 40% bucket 7: 50% bucket 7: 60% bucket 7: 70% bucket 7: 80% bucket 7: 90% bucket 7: 100% Sorting block of length 81528176 for bucket 7 (Using difference cover) Sorting block time: 00:00:12 Returning block of 81528177 for bucket 7 Exited Ebwt loop fchr[A]: 0 fchr[C]: 193247476 fchr[G]: 355349181 fchr[T]: 534730948 fchr[$]: 711557587 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 304203219 bytes to primary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.1.bt2.tmp Wrote 177889404 bytes to secondary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.2.bt2.tmp Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 711557587 bwtLen: 711557588 sz: 177889397 bwtSz: 177889397 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 44472350 offsSz: 177889400 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 3706030 numLines: 3706030 ebwtTotLen: 237185920 ebwtTotSz: 237185920 color: 0 reverse: 1 Total time for backward call to driver() for mirror index: 00:03:55 Renaming /usr/share/metaphlan2/db_v20/mpa_v20_m200.3.bt2.tmp to /usr/share/metaphlan2/db_v20/mpa_v20_m200.3.bt2 Renaming /usr/share/metaphlan2/db_v20/mpa_v20_m200.4.bt2.tmp to /usr/share/metaphlan2/db_v20/mpa_v20_m200.4.bt2 Renaming /usr/share/metaphlan2/db_v20/mpa_v20_m200.1.bt2.tmp to /usr/share/metaphlan2/db_v20/mpa_v20_m200.1.bt2 Renaming /usr/share/metaphlan2/db_v20/mpa_v20_m200.2.bt2.tmp to /usr/share/metaphlan2/db_v20/mpa_v20_m200.2.bt2 Renaming /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.1.bt2.tmp to /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.1.bt2 Renaming /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.2.bt2.tmp to /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.2.bt2 Metaphlan2 data are properly created. Processing triggers for libc-bin (2.41-12) ... 8m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', '-y', 'install', 'metaphlan2-data'] 8m27.6s INFO: Running scripts post_install 8m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_install_exceptions'] 8m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_install_exceptions'] 8m27.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc'] 8m27.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc'] 8m27.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpeyvc5rgc to trixie-next 8m27.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main deb http://security.debian.org trixie-security main deb http://deb.debian.org/debian/ trixie-updates main deb http://deb.debian.org/debian/ trixie-proposed-updates main 8m27.9s INFO: Running scripts pre_distupgrade 8m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 8m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 8m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_distupgrade_exceptions'] 8m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_distupgrade_exceptions'] 8m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 8m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 8m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_distupgrade_zz_database-server'] 8m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_distupgrade_zz_database-server'] 8m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 8m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 8m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', 'update'] 8m28.5s DUMP: Hit:1 http://deb.debian.org/debian trixie InRelease Get:2 http://security.debian.org trixie-security InRelease [43.4 kB] Get:3 http://deb.debian.org/debian trixie-updates InRelease [47.1 kB] Get:4 http://security.debian.org trixie-security/main amd64 Packages [5304 B] Get:5 http://deb.debian.org/debian trixie-proposed-updates InRelease [55.8 kB] Get:6 http://security.debian.org trixie-security/main Translation-en [6724 B] Get:7 http://deb.debian.org/debian trixie-updates/main amd64 Packages [2432 B] Get:8 http://deb.debian.org/debian trixie-updates/main Translation-en [396 B] Get:9 http://deb.debian.org/debian trixie-proposed-updates/main amd64 Packages [7300 B] Get:10 http://deb.debian.org/debian trixie-proposed-updates/main Translation-en [3288 B] Fetched 172 kB in 0s (1066 kB/s) Reading package lists... 8m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', 'update'] 8m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', '-yf', 'dist-upgrade'] 8m28.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 8m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', '-yf', 'dist-upgrade'] 8m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 8m29.0s DUMP: 5c6a884f0339ba51c78a9d3f50b19f1b - 8m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 8m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'show', '--no-all-versions', 'metaphlan2-data'] 8m29.1s DUMP: Package: metaphlan2-data Version: 2.6.0+ds-4 Installed-Size: 753107 Maintainer: Debian Med Packaging Team Architecture: all Depends: debconf (>= 0.5) | debconf-2.0, bowtie2 Description-en: data package for Metagenomic Phylogenetic Analysis MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution. From version 2.0, MetaPhlAn is also able to identify specific strains (in the not-so-frequent cases in which the sample contains a previously sequenced strains) and to track strains across samples for all species. . MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the marker information file can be found at src/utils/markers_info.txt.bz2 or here) identified from ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing: . * unambiguous taxonomic assignments; * accurate estimation of organismal relative abundance; * species-level resolution for bacteria, archaea, eukaryotes and viruses; * strain identification and tracking * orders of magnitude speedups compared to existing methods. * metagenomic strain-level population genomics . This package contains the data for metaphlan2. Description-md5: f0775409e41de9fba49cda4590c73ce4 Homepage: https://bitbucket.org/biobakery/metaphlan2 Section: science Priority: optional Filename: pool/main/m/metaphlan2-data/metaphlan2-data_2.6.0+ds-4_all.deb Size: 204323768 MD5sum: de685246213a02dcedfee6e464f7ac11 SHA256: f38a6e3f49d7b03ba80d9fdd5647b9f9f2dfb38d43b28618053e8ef2c60db7d7 8m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'show', '--no-all-versions', 'metaphlan2-data'] 8m29.1s INFO: apt-cache knows about the following packages: metaphlan2-data 8m29.1s INFO: Running scripts pre_install 8m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_database-server'] 8m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_database-server'] 8m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_exceptions'] 8m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_exceptions'] 8m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_extras'] 8m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_extras'] 8m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_foreign_architecture'] 8m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_foreign_architecture'] 8m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 8m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 8m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'policy'] 8m29.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie-proposed-updates/main amd64 Packages release v=13-updates,o=Debian,a=proposed-updates,n=trixie-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian trixie-updates/main amd64 Packages release v=13-updates,o=Debian,a=stable-updates,n=trixie-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org trixie-security/main amd64 Packages release v=13,o=Debian,a=stable-security,n=trixie-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.0,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 8m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'policy'] 8m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'policy', 'metaphlan2-data'] 8m29.2s DUMP: metaphlan2-data: Installed: 2.6.0+ds-4 Candidate: 2.6.0+ds-4 Version table: *** 2.6.0+ds-4 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 100 /var/lib/dpkg/status 8m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'policy', 'metaphlan2-data'] 8m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', '-y', 'install', 'metaphlan2-data'] 8m29.4s DUMP: Reading package lists... Building dependency tree... Reading state information... metaphlan2-data is already the newest version (2.6.0+ds-4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 8m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', '-y', 'install', 'metaphlan2-data'] 8m29.4s INFO: Running scripts post_install 8m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_install_exceptions'] 8m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_install_exceptions'] 8m29.4s INFO: Running scripts post_distupgrade 8m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_distupgrade_base_cleanup'] 8m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_distupgrade_base_cleanup'] 8m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_distupgrade_exceptions'] 8m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_distupgrade_exceptions'] 8m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 8m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 8m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_distupgrade_squeeze-backports'] 8m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_distupgrade_squeeze-backports'] 8m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_distupgrade_zz_backports'] 8m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_distupgrade_zz_backports'] 8m29.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc'] 8m29.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc'] 8m29.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc'] 8m30.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc'] 8m30.0s INFO: Running scripts pre_install 8m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_database-server'] 8m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_database-server'] 8m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_exceptions'] 8m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_exceptions'] 8m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_extras'] 8m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_extras'] 8m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_foreign_architecture'] 8m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_foreign_architecture'] 8m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 8m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 8m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'policy'] 8m30.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie-proposed-updates/main amd64 Packages release v=13-updates,o=Debian,a=proposed-updates,n=trixie-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian trixie-updates/main amd64 Packages release v=13-updates,o=Debian,a=stable-updates,n=trixie-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org trixie-security/main amd64 Packages release v=13,o=Debian,a=stable-security,n=trixie-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.0,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 8m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'policy'] 8m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'policy', 'metaphlan2-data'] 8m30.1s DUMP: metaphlan2-data: Installed: 2.6.0+ds-4 Candidate: 2.6.0+ds-4 Version table: *** 2.6.0+ds-4 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 100 /var/lib/dpkg/status 8m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-cache', 'policy', 'metaphlan2-data'] 8m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', '-y', 'install', 'metaphlan2-data=2.6.0+ds-4'] 8m30.4s DUMP: Reading package lists... Building dependency tree... Reading state information... metaphlan2-data is already the newest version (2.6.0+ds-4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 8m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'apt-get', '-y', 'install', 'metaphlan2-data=2.6.0+ds-4'] 8m30.4s INFO: Running scripts post_install 8m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_install_exceptions'] 8m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', 'tmp/scripts/post_install_exceptions'] 8m30.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc'] 8m30.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc'] 8m30.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', '-ac', '--ignore-obsolete'] 8m31.4s DUMP: debsums: missing file /srv/piuparts.debian.org/tmp/tmpeyvc5rgc/var/lib/metaphlan2-data/markers.fasta (from metaphlan2-data package) 8m31.4s DEBUG: Command failed (status=2), but ignoring error: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc', '-ac', '--ignore-obsolete'] 8m31.4s ERROR: FAIL: debsums reports modifications inside the chroot: debsums: missing file /var/lib/metaphlan2-data/markers.fasta (from metaphlan2-data package) 8m31.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/shm'] 8m31.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/shm'] 8m31.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/console'] 8m31.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/console'] 8m31.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/ptmx'] 8m31.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/ptmx'] 8m31.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/pts'] 8m31.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/dev/pts'] 8m31.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/proc'] 8m31.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc/proc'] 8m31.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc'] 8m32.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpeyvc5rgc'] 8m32.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpeyvc5rgc 8m32.1s ERROR: piuparts run ends. ret=1 End: 2025-08-11 21:00:12 GMT