Start: 2025-08-13 03:57:47 GMT [trixie] Package: libncbi-vdb-dev Source: ncbi-vdb Version: 3.2.1+dfsg-2 Installed-Size: 8727 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-dev, libmbedtls-dev, libzstd-dev, zlib1g-dev, libncbi-vdb3 (= 3.2.1+dfsg-2), libncbi-wvdb-dev (= 3.2.1+dfsg-2), libaec-dev Description: libraries for using data in the INSDC Sequence Read Archives (devel) Multi-Arch: same Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: e70dc7ddf4e377a06c2d8543dd083b4d Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_3.2.1+dfsg-2_amd64.deb Size: 1587844 MD5sum: 767bc1e60ea1dca9952bffbb2adb7ad0 SHA256: 8a5c342fd29c1f53506b2d78a6b996f32c5bf74fb71a1dd3a265b6ab1055de42 [trixie-next] Package: libncbi-vdb-dev Source: ncbi-vdb Version: 3.2.1+dfsg-2 Installed-Size: 8727 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-dev, libmbedtls-dev, libzstd-dev, zlib1g-dev, libncbi-vdb3 (= 3.2.1+dfsg-2), libncbi-wvdb-dev (= 3.2.1+dfsg-2), libaec-dev Description: libraries for using data in the INSDC Sequence Read Archives (devel) Multi-Arch: same Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: e70dc7ddf4e377a06c2d8543dd083b4d Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_3.2.1+dfsg-2_amd64.deb Size: 1587844 MD5sum: 767bc1e60ea1dca9952bffbb2adb7ad0 SHA256: 8a5c342fd29c1f53506b2d78a6b996f32c5bf74fb71a1dd3a265b6ab1055de42 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie -d trixie-next -B /srv/piuparts.debian.org/slave/refchroot/trixie2next/reference-chroot-metadata.dat --apt libncbi-vdb-dev=3.2.1+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508101417~1.6.0-7-g17c4ea32 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie -d trixie-next -B /srv/piuparts.debian.org/slave/refchroot/trixie2next/reference-chroot-metadata.dat --apt libncbi-vdb-dev=3.2.1+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp6071gyyw 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp6071gyyw 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp6071gyyw/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', 'update'] 0m1.7s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [138 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9668 kB] Fetched 9805 kB in 1s (13.5 MB/s) Reading package lists... 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', 'update'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.8s DUMP: 8fc0def95551deb38dc214d6c9cce720 - 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.8s INFO: Running scripts post_setup 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.7-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.7-1 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-4 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/trixie2next/reference-chroot-metadata.dat 0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m4.0s INFO: Running scripts is_testable 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s INFO: Running scripts pre_test 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_test_root_password'] 0m4.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_test_root_password'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m4.3s DUMP: Package: libncbi-vdb-dev Source: ncbi-vdb Version: 3.2.1+dfsg-2 Installed-Size: 8727 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-dev, libmbedtls-dev, libzstd-dev, zlib1g-dev, libncbi-vdb3 (= 3.2.1+dfsg-2), libncbi-wvdb-dev (= 3.2.1+dfsg-2), libaec-dev Description-en: libraries for using data in the INSDC Sequence Read Archives (devel) The (US) National Center for Biotechnology Information (NCBI)'s Virtual/Vertical Database (VDB) is a highly compressed column-oriented data warehousing technology developed initially to address the needs of the Sequence Read Archive (SRA). It is unique in that it builds databases from smaller parts that can function independently as _documents_, supports effective and efficient compression, supports encryption while remaining encrypted on disk, transparent distribution and remote access. . This is the development package for reading VDB data. Description-md5: e70dc7ddf4e377a06c2d8543dd083b4d Multi-Arch: same Homepage: https://github.com/ncbi/ncbi-vdb Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_3.2.1+dfsg-2_amd64.deb Size: 1587844 MD5sum: 767bc1e60ea1dca9952bffbb2adb7ad0 SHA256: 8a5c342fd29c1f53506b2d78a6b996f32c5bf74fb71a1dd3a265b6ab1055de42 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m4.3s INFO: apt-cache knows about the following packages: libncbi-vdb-dev 0m4.3s INFO: Running scripts pre_install 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'policy'] 0m4.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.0,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'policy'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m4.4s DUMP: libncbi-vdb-dev: Installed: (none) Candidate: 3.2.1+dfsg-2 Version table: 3.2.1+dfsg-2 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m7.0s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libcrypt-dev libmbedcrypto16 libmbedtls-dev libmbedtls21 libmbedx509-7 libncbi-vdb3 libncbi-wvdb-dev libncbi-wvdb3 libsz2 libzstd-dev linux-libc-dev ncbi-vdb-data rpcsvc-proto zlib1g-dev Suggested packages: libc-devtools glibc-doc manpages-dev libmbedtls-doc Recommended packages: bzip2-doc manpages manpages-dev python3:any The following NEW packages will be installed: libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libcrypt-dev libmbedcrypto16 libmbedtls-dev libmbedtls21 libmbedx509-7 libncbi-vdb-dev libncbi-vdb3 libncbi-wvdb-dev libncbi-wvdb3 libsz2 libzstd-dev linux-libc-dev ncbi-vdb-data rpcsvc-proto zlib1g-dev 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 55.8 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get:3 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libc-dev-bin amd64 2.41-12 [58.2 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 linux-libc-dev all 6.12.38-1 [2627 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libc6-dev amd64 2.41-12 [1991 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto16 amd64 3.6.4-2 [360 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libmbedx509-7 amd64 3.6.4-2 [151 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libmbedtls21 amd64 3.6.4-2 [242 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libmbedtls-dev amd64 3.6.4-2 [834 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libncbi-wvdb3 amd64 3.2.1+dfsg-2 [1167 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libncbi-wvdb-dev amd64 3.2.1+dfsg-2 [1286 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libncbi-vdb-dev amd64 3.2.1+dfsg-2 [1588 kB] Fetched 13.1 MB in 0s (74.5 MB/s) Selecting previously unselected package libaec0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4938 files and directories currently installed.) Preparing to unpack .../00-libaec0_1.1.3-1+b1_amd64.deb ... Unpacking libaec0:amd64 (1.1.3-1+b1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../01-libsz2_1.1.3-1+b1_amd64.deb ... Unpacking libsz2:amd64 (1.1.3-1+b1) ... Selecting previously unselected package libaec-dev:amd64. Preparing to unpack .../02-libaec-dev_1.1.3-1+b1_amd64.deb ... Unpacking libaec-dev:amd64 (1.1.3-1+b1) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack .../03-libc-dev-bin_2.41-12_amd64.deb ... Unpacking libc-dev-bin (2.41-12) ... Selecting previously unselected package linux-libc-dev. Preparing to unpack .../04-linux-libc-dev_6.12.38-1_all.deb ... Unpacking linux-libc-dev (6.12.38-1) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../05-libcrypt-dev_1%3a4.4.38-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.38-1) ... Selecting previously unselected package rpcsvc-proto. Preparing to unpack .../06-rpcsvc-proto_1.4.3-1_amd64.deb ... Unpacking rpcsvc-proto (1.4.3-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../07-libc6-dev_2.41-12_amd64.deb ... Unpacking libc6-dev:amd64 (2.41-12) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../08-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libmbedcrypto16:amd64. Preparing to unpack .../09-libmbedcrypto16_3.6.4-2_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.4-2) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../10-libmbedx509-7_3.6.4-2_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.4-2) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../11-libmbedtls21_3.6.4-2_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.4-2) ... Selecting previously unselected package libmbedtls-dev:amd64. Preparing to unpack .../12-libmbedtls-dev_3.6.4-2_amd64.deb ... Unpacking libmbedtls-dev:amd64 (3.6.4-2) ... Selecting previously unselected package libzstd-dev:amd64. Preparing to unpack .../13-libzstd-dev_1.5.7+dfsg-1_amd64.deb ... Unpacking libzstd-dev:amd64 (1.5.7+dfsg-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../14-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../15-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../16-libncbi-vdb3_3.2.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-wvdb3:amd64. Preparing to unpack .../17-libncbi-wvdb3_3.2.1+dfsg-2_amd64.deb ... Unpacking libncbi-wvdb3:amd64 (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-wvdb-dev:amd64. Preparing to unpack .../18-libncbi-wvdb-dev_3.2.1+dfsg-2_amd64.deb ... Unpacking libncbi-wvdb-dev:amd64 (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb-dev:amd64. Preparing to unpack .../19-libncbi-vdb-dev_3.2.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb-dev:amd64 (3.2.1+dfsg-2) ... Setting up libzstd-dev:amd64 (1.5.7+dfsg-1) ... Setting up linux-libc-dev (6.12.38-1) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up rpcsvc-proto (1.4.3-1) ... Setting up libcrypt-dev:amd64 (1:4.4.38-1) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up libmbedcrypto16:amd64 (3.6.4-2) ... Setting up libc-dev-bin (2.41-12) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libaec-dev:amd64 (1.1.3-1+b1) ... Setting up libmbedx509-7:amd64 (3.6.4-2) ... Setting up libmbedtls21:amd64 (3.6.4-2) ... Setting up libc6-dev:amd64 (2.41-12) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up libmbedtls-dev:amd64 (3.6.4-2) ... Setting up libncbi-wvdb3:amd64 (3.2.1+dfsg-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libncbi-wvdb-dev:amd64 (3.2.1+dfsg-2) ... Setting up libncbi-vdb-dev:amd64 (3.2.1+dfsg-2) ... Processing triggers for libc-bin (2.41-12) ... 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m7.0s INFO: Running scripts post_install 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_install_exceptions'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_install_exceptions'] 0m7.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m7.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m7.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp6071gyyw to trixie-next 0m7.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main deb http://security.debian.org trixie-security main deb http://deb.debian.org/debian/ trixie-updates main deb http://deb.debian.org/debian/ trixie-proposed-updates main 0m7.4s INFO: Running scripts pre_distupgrade 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_distupgrade_exceptions'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_distupgrade_exceptions'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', 'update'] 0m8.7s DUMP: Get:1 http://security.debian.org trixie-security InRelease [43.4 kB] Hit:2 http://deb.debian.org/debian trixie InRelease Get:3 http://deb.debian.org/debian trixie-updates InRelease [47.1 kB] Get:4 http://deb.debian.org/debian trixie-proposed-updates InRelease [55.8 kB] Get:5 http://security.debian.org trixie-security/main amd64 Packages [5304 B] Get:6 http://security.debian.org trixie-security/main Translation-en [6724 B] Get:7 http://deb.debian.org/debian trixie-updates/main amd64 Packages [2432 B] Get:8 http://deb.debian.org/debian trixie-updates/main Translation-en [396 B] Get:9 http://deb.debian.org/debian trixie-proposed-updates/main amd64 Packages [7300 B] Get:10 http://deb.debian.org/debian trixie-proposed-updates/main Translation-en [3288 B] Fetched 172 kB in 0s (1073 kB/s) Reading package lists... 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', 'update'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', '-yf', 'dist-upgrade'] 0m9.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', '-yf', 'dist-upgrade'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.9s DUMP: 5c6a884f0339ba51c78a9d3f50b19f1b - 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m10.1s DUMP: Package: libncbi-vdb-dev Source: ncbi-vdb Version: 3.2.1+dfsg-2 Installed-Size: 8727 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-dev, libmbedtls-dev, libzstd-dev, zlib1g-dev, libncbi-vdb3 (= 3.2.1+dfsg-2), libncbi-wvdb-dev (= 3.2.1+dfsg-2), libaec-dev Description-en: libraries for using data in the INSDC Sequence Read Archives (devel) The (US) National Center for Biotechnology Information (NCBI)'s Virtual/Vertical Database (VDB) is a highly compressed column-oriented data warehousing technology developed initially to address the needs of the Sequence Read Archive (SRA). It is unique in that it builds databases from smaller parts that can function independently as _documents_, supports effective and efficient compression, supports encryption while remaining encrypted on disk, transparent distribution and remote access. . This is the development package for reading VDB data. Description-md5: e70dc7ddf4e377a06c2d8543dd083b4d Multi-Arch: same Homepage: https://github.com/ncbi/ncbi-vdb Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_3.2.1+dfsg-2_amd64.deb Size: 1587844 MD5sum: 767bc1e60ea1dca9952bffbb2adb7ad0 SHA256: 8a5c342fd29c1f53506b2d78a6b996f32c5bf74fb71a1dd3a265b6ab1055de42 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m10.1s INFO: apt-cache knows about the following packages: libncbi-vdb-dev 0m10.1s INFO: Running scripts pre_install 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_database-server'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_database-server'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_exceptions'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_exceptions'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_extras'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_extras'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'policy'] 0m10.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie-proposed-updates/main amd64 Packages release v=13-updates,o=Debian,a=proposed-updates,n=trixie-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian trixie-updates/main amd64 Packages release v=13-updates,o=Debian,a=stable-updates,n=trixie-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org trixie-security/main amd64 Packages release v=13,o=Debian,a=stable-security,n=trixie-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.0,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'policy'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m10.2s DUMP: libncbi-vdb-dev: Installed: 3.2.1+dfsg-2 Candidate: 3.2.1+dfsg-2 Version table: *** 3.2.1+dfsg-2 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 100 /var/lib/dpkg/status 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m10.6s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi-vdb-dev is already the newest version (3.2.1+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m10.6s INFO: Running scripts post_install 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_install_exceptions'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_install_exceptions'] 0m10.7s INFO: Running scripts post_distupgrade 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_distupgrade_exceptions'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_distupgrade_exceptions'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_distupgrade_zz_backports'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_distupgrade_zz_backports'] 0m10.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m11.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m11.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m11.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m11.9s INFO: Running scripts pre_install 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_database-server'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_database-server'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_exceptions'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_exceptions'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_extras'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_extras'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'policy'] 0m12.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie-proposed-updates/main amd64 Packages release v=13-updates,o=Debian,a=proposed-updates,n=trixie-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian trixie-updates/main amd64 Packages release v=13-updates,o=Debian,a=stable-updates,n=trixie-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org trixie-security/main amd64 Packages release v=13,o=Debian,a=stable-security,n=trixie-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.0,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'policy'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m12.1s DUMP: libncbi-vdb-dev: Installed: 3.2.1+dfsg-2 Candidate: 3.2.1+dfsg-2 Version table: *** 3.2.1+dfsg-2 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 100 /var/lib/dpkg/status 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', '-y', 'install', 'libncbi-vdb-dev=3.2.1+dfsg-2'] 0m12.8s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi-vdb-dev is already the newest version (3.2.1+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', '-y', 'install', 'libncbi-vdb-dev=3.2.1+dfsg-2'] 0m12.8s INFO: Running scripts post_install 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_install_exceptions'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_install_exceptions'] 0m12.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m13.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m13.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', '-ac', '--ignore-obsolete'] 0m14.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', '-ac', '--ignore-obsolete'] 0m14.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m14.5s DUMP: 0.15.9~deb12u1 0m14.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m14.5s INFO: Running adequate version 0.15.9~deb12u1 now. 0m14.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'libncbi-vdb-dev'] 0m14.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'libncbi-vdb-dev'] 0m14.6s INFO: Running scripts pre_remove 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_remove_exceptions'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/pre_remove_exceptions'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m15.5s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec-dev:amd64 libaec-dev 1.1.3-1+b1 install ok installed libaec0:amd64 libaec0 1.1.3-1+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc-dev-bin libc-dev-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libc6-dev:amd64 libc6-dev 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.38-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.4-2 install ok installed libmbedtls-dev:amd64 libmbedtls-dev 3.6.4-2 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.4-2 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.4-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libncbi-vdb-dev:amd64 libncbi-vdb-dev 3.2.1+dfsg-2 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.2.1+dfsg-2 install ok installed libncbi-wvdb-dev:amd64 libncbi-wvdb-dev 3.2.1+dfsg-2 install ok installed libncbi-wvdb3:amd64 libncbi-wvdb3 3.2.1+dfsg-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.7-1 install ok installed libsz2:amd64 libsz2 1.1.3-1+b1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.7-1 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd-dev:amd64 libzstd-dev 1.5.7+dfsg-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed linux-libc-dev linux-libc-dev 6.12.38-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncbi-vdb-data ncbi-vdb-data 3.2.1+dfsg-2 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-4 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', 'remove', '--allow-remove-essential', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcrypt-dev:amd64', 'libmbedcrypto16:amd64', 'libmbedtls-dev:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb-dev:amd64', 'libncbi-vdb3:amd64', 'libncbi-wvdb-dev:amd64', 'libncbi-wvdb3:amd64', 'libsz2:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'ncbi-vdb-data', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 0m16.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libcrypt-dev libmbedcrypto16 libmbedtls-dev libmbedtls21 libmbedx509-7 libncbi-vdb-dev libncbi-vdb3 libncbi-wvdb-dev libncbi-wvdb3 libsz2 libzstd-dev linux-libc-dev ncbi-vdb-data rpcsvc-proto zlib1g-dev 0 upgraded, 0 newly installed, 20 to remove and 0 not upgraded. After this operation, 55.8 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8980 files and directories currently installed.) Removing libncbi-vdb-dev:amd64 (3.2.1+dfsg-2) ... Removing libaec-dev:amd64 (1.1.3-1+b1) ... Removing libsz2:amd64 (1.1.3-1+b1) ... Removing libaec0:amd64 (1.1.3-1+b1) ... Removing libncbi-wvdb-dev:amd64 (3.2.1+dfsg-2) ... Removing libbz2-dev:amd64 (1.0.8-6) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Removing libc6-dev:amd64 (2.41-12) ... Removing libc-dev-bin (2.41-12) ... Removing libcrypt-dev:amd64 (1:4.4.38-1) ... Removing libmbedtls-dev:amd64 (3.6.4-2) ... Removing libncbi-wvdb3:amd64 (3.2.1+dfsg-2) ... Removing libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Removing libmbedtls21:amd64 (3.6.4-2) ... Removing libmbedx509-7:amd64 (3.6.4-2) ... Removing libzstd-dev:amd64 (1.5.7+dfsg-1) ... Removing linux-libc-dev (6.12.38-1) ... Removing ncbi-vdb-data (3.2.1+dfsg-2) ... rm: cannot remove '/usr/lib/python3/dist-packages/__pycache__/vdb.*': No such file or directory Removing rpcsvc-proto (1.4.3-1) ... Removing libmbedcrypto16:amd64 (3.6.4-2) ... Processing triggers for libc-bin (2.41-12) ... 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', 'remove', '--allow-remove-essential', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcrypt-dev:amd64', 'libmbedcrypto16:amd64', 'libmbedtls-dev:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb-dev:amd64', 'libncbi-vdb3:amd64', 'libncbi-wvdb-dev:amd64', 'libncbi-wvdb3:amd64', 'libsz2:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'ncbi-vdb-data', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 0m16.4s INFO: Running scripts post_remove 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_remove_exceptions'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_remove_exceptions'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'dpkg', '--purge', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcrypt-dev:amd64', 'libmbedcrypto16:amd64', 'libmbedtls-dev:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb-dev:amd64', 'libncbi-vdb3:amd64', 'libncbi-wvdb-dev:amd64', 'libncbi-wvdb3:amd64', 'libsz2:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'ncbi-vdb-data', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 0m16.4s DUMP: dpkg: warning: ignoring request to remove libaec-dev which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libbz2-dev which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed (Reading database ... 4940 files and directories currently installed.) Purging configuration files for libcrypt-dev:amd64 (1:4.4.38-1) ... dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed dpkg: warning: ignoring request to remove libmbedtls-dev which isn't installed dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb-dev which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed dpkg: warning: ignoring request to remove libncbi-wvdb-dev which isn't installed dpkg: warning: ignoring request to remove libncbi-wvdb3 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libzstd-dev which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for ncbi-vdb-data (3.2.1+dfsg-2) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'dpkg', '--purge', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcrypt-dev:amd64', 'libmbedcrypto16:amd64', 'libmbedtls-dev:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb-dev:amd64', 'libncbi-vdb3:amd64', 'libncbi-wvdb-dev:amd64', 'libncbi-wvdb3:amd64', 'libsz2:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'ncbi-vdb-data', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 0m16.4s INFO: Running scripts post_purge 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_purge_exceptions'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_purge_exceptions'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'dpkg', '--purge', '--pending'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'dpkg', '--purge', '--pending'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'dpkg', '--remove', '--pending'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'dpkg', '--remove', '--pending'] 0m16.5s INFO: Running scripts post_test 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_test_exceptions'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'tmp/scripts/post_test_exceptions'] 0m16.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m16.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'dpkg-divert', '--list'] 0m16.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'dpkg-divert', '--list'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', 'clean'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6071gyyw', 'apt-get', 'clean'] 0m16.8s DEBUG: Recording chroot state 0m17.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/shm'] 0m17.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/shm'] 0m17.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/console'] 0m17.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/console'] 0m17.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/ptmx'] 0m17.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/ptmx'] 0m17.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/pts'] 0m17.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/dev/pts'] 0m17.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/proc'] 0m17.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6071gyyw/proc'] 0m17.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m17.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6071gyyw'] 0m17.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp6071gyyw 0m17.9s INFO: PASS: Upgrading between Debian distributions. 0m17.9s INFO: PASS: All tests. 0m17.9s INFO: piuparts run ends. ret=0 End: 2025-08-13 03:58:05 GMT