Start: 2025-08-13 08:11:53 GMT [trixie] Package: mrbayes-mpi Source: mrbayes (3.2.7a-7) Version: 3.2.7a-7+b1 Installed-Size: 1620 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libhmsbeagle1v5 (>= 3.1.2+dfsg), libreadline8t64 (>= 6.0), mpi-default-bin, ssh Suggests: mpi-default, mrbayes-doc Description: Bayesian Inference of Phylogeny - mpi version Homepage: http://mrbayes.csit.fsu.edu/ Description-md5: d4667b242cc8f99f098ff96397619072 Section: science Priority: optional Filename: pool/main/m/mrbayes/mrbayes-mpi_3.2.7a-7+b1_amd64.deb Size: 598092 MD5sum: e70c878c02e125a0e1d930dc9003c45c SHA256: e1140bd0ed13a75e9e76583c08824108b51723dd25f1ebf41efeeb75c117996a [trixie-next] Package: mrbayes-mpi Source: mrbayes (3.2.7a-7) Version: 3.2.7a-7+b1 Installed-Size: 1620 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libhmsbeagle1v5 (>= 3.1.2+dfsg), libreadline8t64 (>= 6.0), mpi-default-bin, ssh Suggests: mpi-default, mrbayes-doc Description: Bayesian Inference of Phylogeny - mpi version Homepage: http://mrbayes.csit.fsu.edu/ Description-md5: d4667b242cc8f99f098ff96397619072 Section: science Priority: optional Filename: pool/main/m/mrbayes/mrbayes-mpi_3.2.7a-7+b1_amd64.deb Size: 598092 MD5sum: e70c878c02e125a0e1d930dc9003c45c SHA256: e1140bd0ed13a75e9e76583c08824108b51723dd25f1ebf41efeeb75c117996a Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie -d trixie-next -B /srv/piuparts.debian.org/slave/refchroot/trixie2next/reference-chroot-metadata.dat --apt mrbayes-mpi=3.2.7a-7+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508101417~1.6.0-7-g17c4ea32 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d trixie -d trixie-next -B /srv/piuparts.debian.org/slave/refchroot/trixie2next/reference-chroot-metadata.dat --apt mrbayes-mpi=3.2.7a-7+b1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpbq8o5o3m 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpbq8o5o3m 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpbq8o5o3m/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', 'update'] 0m1.7s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [138 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9668 kB] Fetched 9805 kB in 1s (13.8 MB/s) Reading package lists... 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', 'update'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.8s DUMP: 8fc0def95551deb38dc214d6c9cce720 - 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.8s INFO: Running scripts post_setup 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.7-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.7-1 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-4 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/trixie2next/reference-chroot-metadata.dat 0m3.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m3.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m3.8s INFO: Running scripts is_testable 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/is_testable_uninstallable'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/is_testable_uninstallable'] 0m3.8s INFO: Running scripts pre_test 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_test_exceptions'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_test_exceptions'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_test_root_password'] 0m3.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_test_root_password'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'show', '--no-all-versions', 'mrbayes-mpi'] 0m4.1s DUMP: Package: mrbayes-mpi Source: mrbayes (3.2.7a-7) Version: 3.2.7a-7+b1 Installed-Size: 1620 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libhmsbeagle1v5 (>= 3.1.2+dfsg), libreadline8t64 (>= 6.0), mpi-default-bin, ssh Suggests: mpi-default, mrbayes-doc Description-en: Bayesian Inference of Phylogeny - mpi version Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. . This package offers a binary compiled for parallel computation with MPI. Description-md5: d4667b242cc8f99f098ff96397619072 Homepage: http://mrbayes.csit.fsu.edu/ Section: science Priority: optional Filename: pool/main/m/mrbayes/mrbayes-mpi_3.2.7a-7+b1_amd64.deb Size: 598092 MD5sum: e70c878c02e125a0e1d930dc9003c45c SHA256: e1140bd0ed13a75e9e76583c08824108b51723dd25f1ebf41efeeb75c117996a 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'show', '--no-all-versions', 'mrbayes-mpi'] 0m4.1s INFO: apt-cache knows about the following packages: mrbayes-mpi 0m4.1s INFO: Running scripts pre_install 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_database-server'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_database-server'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_extras'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_extras'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'policy'] 0m4.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.0,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'policy'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'policy', 'mrbayes-mpi'] 0m4.2s DUMP: mrbayes-mpi: Installed: (none) Candidate: 3.2.7a-7+b1 Version table: 3.2.7a-7+b1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'policy', 'mrbayes-mpi'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', '-y', 'install', 'mrbayes-mpi'] 0m16.3s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: adduser ibverbs-providers libamd-comgr2 libamdhip64-5 libapparmor1 libcbor0.10 libclang-common-19-dev libclang-cpp19 libclc-19 libclc-19-dev libcom-err2 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libfabric1 libffi8 libfido2-1 libfuse3-4 libgomp1 libgssapi-krb5-2 libhmsbeagle1v5 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm17t64 libllvm19 libllvmspirvlib19.1 libmunge2 libncursesw6 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libpmix2t64 libproc2-0 libpsm2-2 librdmacm1t64 libreadline8t64 libsystemd-shared libtext-charwidth-perl libtext-wrapi18n-perl libucx0 libwrap0 libwtmpdb0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libz3-4 libze1 mesa-opencl-icd mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-server openssh-sftp-server procps readline-common runit-helper sensible-utils ssh systemd ucf Suggested packages: liblocale-gettext-perl perl cron quota fuse3 krb5-doc krb5-user libhwloc-contrib-plugins pciutils libarchive13t64 libbpf1 libcryptsetup12 libdw1t64 libgcrypt20 libidn2-0 libip4tc2 libp11-kit0 libpwquality1 libqrencode4 libtss2-rc0t64 mpi-default mrbayes-doc gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass molly-guard ufw readline-doc systemd-container systemd-homed systemd-userdbd systemd-boot systemd-resolved systemd-repart libtss2-tcti-device0 polkitd Recommended packages: libclang-rt-19-dev krb5-locales libgpm2 libkmod2 xauth default-logind | logind | libpam-systemd ncurses-term psmisc linux-sysctl-defaults default-dbus-system-bus | dbus-system-bus systemd-timesyncd | time-daemon systemd-cryptsetup The following NEW packages will be installed: adduser ibverbs-providers libamd-comgr2 libamdhip64-5 libapparmor1 libcbor0.10 libclang-common-19-dev libclang-cpp19 libclc-19 libclc-19-dev libcom-err2 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libfabric1 libffi8 libfido2-1 libfuse3-4 libgomp1 libgssapi-krb5-2 libhmsbeagle1v5 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm17t64 libllvm19 libllvmspirvlib19.1 libmunge2 libncursesw6 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libpmix2t64 libproc2-0 libpsm2-2 librdmacm1t64 libreadline8t64 libsystemd-shared libtext-charwidth-perl libtext-wrapi18n-perl libucx0 libwrap0 libwtmpdb0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libz3-4 libze1 mesa-opencl-icd mpi-default-bin mrbayes-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-server openssh-sftp-server procps readline-common runit-helper sensible-utils ssh systemd ucf 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 152 MB of archives. After this operation, 764 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libsystemd-shared amd64 257.7-1 [2151 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libapparmor1 amd64 4.1.0-1 [43.7 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 systemd amd64 257.7-1 [3099 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 adduser all 3.152 [191 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:13 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 openssh-client amd64 1:10.0p1-7 [985 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 openssh-sftp-server amd64 1:10.0p1-7 [65.3 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:21 http://deb.debian.org/debian trixie/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:22 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0052 [43.3 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 runit-helper all 2.16.4 [7296 B] Get:25 http://deb.debian.org/debian trixie/main amd64 libwrap0 amd64 7.6.q-36 [55.3 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libwtmpdb0 amd64 0.73.0-3 [12.1 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 openssh-server amd64 1:10.0p1-7 [601 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-2 [59.4 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-2 [182 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 56.1-1 [62.4 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 56.1-1 [357 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-22+b2 [23.6 MB] Get:37 http://deb.debian.org/debian trixie/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get:38 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.124-2 [8288 B] Get:39 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.124-2 [39.0 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.124-2 [22.6 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.19-1 [22.2 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 libamdhip64-5 amd64 5.7.1-6 [8924 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 libclang-common-19-dev amd64 1:19.1.7-3+b1 [740 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libllvm19 amd64 1:19.1.7-3+b1 [26.0 MB] Get:48 http://deb.debian.org/debian trixie/main amd64 libclang-cpp19 amd64 1:19.1.7-3+b1 [13.2 MB] Get:49 http://deb.debian.org/debian trixie/main amd64 libclc-19-dev all 1:19.1.7-3 [66.0 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libclc-19 all 1:19.1.7-3 [12.1 MB] Get:51 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 libdrm-intel1 amd64 2.4.124-2 [64.1 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 librdmacm1t64 amd64 56.1-1 [70.4 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 2.1.0-1.1 [706 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 libfuse3-4 amd64 3.17.2-3 [98.7 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [42.9 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 libllvmspirvlib19.1 amd64 19.1.6-1 [894 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 mesa-opencl-icd amd64 25.0.7-2 [24.4 MB] Get:63 http://deb.debian.org/debian trixie/main amd64 libhmsbeagle1v5 amd64 4.0.1+dfsg-3 [124 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 libze1 amd64 1.20.6-1 [473 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.12.0-4 [164 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.12.0-4 [23.5 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 libibumad3 amd64 56.1-1 [30.0 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 libibmad5 amd64 56.1-1 [44.5 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.16-1 [19.7 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 libpmix2t64 amd64 5.0.7-1 [660 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.18.1+ds-2+b1 [1196 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 libopenmpi40 amd64 5.0.7-1 [2365 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 openmpi-common all 5.0.7-1 [97.2 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 openmpi-bin amd64 5.0.7-1 [189 kB] Get:83 http://deb.debian.org/debian trixie/main amd64 mpi-default-bin amd64 1.18 [2576 B] Get:84 http://deb.debian.org/debian trixie/main amd64 ssh all 1:10.0p1-7 [143 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 mrbayes-mpi amd64 3.2.7a-7+b1 [598 kB] Preconfiguring packages ... Fetched 152 MB in 1s (131 MB/s) Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4938 files and directories currently installed.) Preparing to unpack .../libsystemd-shared_257.7-1_amd64.deb ... Unpacking libsystemd-shared:amd64 (257.7-1) ... Selecting previously unselected package libapparmor1:amd64. Preparing to unpack .../libapparmor1_4.1.0-1_amd64.deb ... Unpacking libapparmor1:amd64 (4.1.0-1) ... 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Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../13-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../14-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../15-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../16-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package ucf. Preparing to unpack .../17-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package runit-helper. Preparing to unpack .../18-runit-helper_2.16.4_all.deb ... Unpacking runit-helper (2.16.4) ... Selecting previously unselected package libwrap0:amd64. Preparing to unpack .../19-libwrap0_7.6.q-36_amd64.deb ... Unpacking libwrap0:amd64 (7.6.q-36) ... Selecting previously unselected package libwtmpdb0:amd64. Preparing to unpack .../20-libwtmpdb0_0.73.0-3_amd64.deb ... Unpacking libwtmpdb0:amd64 (0.73.0-3) ... Selecting previously unselected package openssh-server. Preparing to unpack .../21-openssh-server_1%3a10.0p1-7_amd64.deb ... Unpacking openssh-server (1:10.0p1-7) ... Selecting previously unselected package readline-common. Preparing to unpack .../22-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../23-libnl-3-200_3.7.0-2_amd64.deb ... Unpacking libnl-3-200:amd64 (3.7.0-2) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../24-libnl-route-3-200_3.7.0-2_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.7.0-2) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../25-libibverbs1_56.1-1_amd64.deb ... Unpacking libibverbs1:amd64 (56.1-1) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../26-ibverbs-providers_56.1-1_amd64.deb ... Unpacking ibverbs-providers:amd64 (56.1-1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../27-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../28-libxml2_2.12.7+dfsg+really2.9.14-2.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../29-libz3-4_4.13.3-1_amd64.deb ... Unpacking libz3-4:amd64 (4.13.3-1) ... Selecting previously unselected package libllvm17t64:amd64. Preparing to unpack .../30-libllvm17t64_1%3a17.0.6-22+b2_amd64.deb ... Unpacking libllvm17t64:amd64 (1:17.0.6-22+b2) ... Selecting previously unselected package libamd-comgr2:amd64. Preparing to unpack .../31-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3+b2_amd64.deb ... Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../32-libdrm-common_2.4.124-2_all.deb ... Unpacking libdrm-common (2.4.124-2) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../33-libdrm2_2.4.124-2_amd64.deb ... Unpacking libdrm2:amd64 (2.4.124-2) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../34-libdrm-amdgpu1_2.4.124-2_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.124-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../35-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../36-libnuma1_2.0.19-1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.19-1) ... Selecting previously unselected package libhsakmt1:amd64. Preparing to unpack .../37-libhsakmt1_6.2.4+ds-1_amd64.deb ... Unpacking libhsakmt1:amd64 (6.2.4+ds-1) ... Selecting previously unselected package libhsa-runtime64-1:amd64. Preparing to unpack .../38-libhsa-runtime64-1_6.1.2-3_amd64.deb ... Unpacking libhsa-runtime64-1:amd64 (6.1.2-3) ... Selecting previously unselected package libamdhip64-5:amd64. Preparing to unpack .../39-libamdhip64-5_5.7.1-6_amd64.deb ... Unpacking libamdhip64-5:amd64 (5.7.1-6) ... Selecting previously unselected package libclang-common-19-dev:amd64. Preparing to unpack .../40-libclang-common-19-dev_1%3a19.1.7-3+b1_amd64.deb ... Unpacking libclang-common-19-dev:amd64 (1:19.1.7-3+b1) ... Selecting previously unselected package libllvm19:amd64. Preparing to unpack .../41-libllvm19_1%3a19.1.7-3+b1_amd64.deb ... Unpacking libllvm19:amd64 (1:19.1.7-3+b1) ... Selecting previously unselected package libclang-cpp19. Preparing to unpack .../42-libclang-cpp19_1%3a19.1.7-3+b1_amd64.deb ... Unpacking libclang-cpp19 (1:19.1.7-3+b1) ... Selecting previously unselected package libclc-19-dev. Preparing to unpack .../43-libclc-19-dev_1%3a19.1.7-3_all.deb ... Unpacking libclc-19-dev (1:19.1.7-3) ... Selecting previously unselected package libclc-19. Preparing to unpack .../44-libclc-19_1%3a19.1.7-3_all.deb ... Unpacking libclc-19 (1:19.1.7-3) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../45-libpciaccess0_0.17-3+b3_amd64.deb ... Unpacking libpciaccess0:amd64 (0.17-3+b3) ... Selecting previously unselected package libdrm-intel1:amd64. Preparing to unpack .../46-libdrm-intel1_2.4.124-2_amd64.deb ... Unpacking libdrm-intel1:amd64 (2.4.124-2) ... Selecting previously unselected package libevent-core-2.1-7t64:amd64. Preparing to unpack .../47-libevent-core-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. Preparing to unpack .../48-libevent-pthreads-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libpsm2-2. Preparing to unpack .../49-libpsm2-2_11.2.185-2.1_amd64.deb ... Unpacking libpsm2-2 (11.2.185-2.1) ... Selecting previously unselected package librdmacm1t64:amd64. Preparing to unpack .../50-librdmacm1t64_56.1-1_amd64.deb ... Unpacking librdmacm1t64:amd64 (56.1-1) ... Selecting previously unselected package libfabric1:amd64. Preparing to unpack .../51-libfabric1_2.1.0-1.1_amd64.deb ... Unpacking libfabric1:amd64 (2.1.0-1.1) ... Selecting previously unselected package libfuse3-4:amd64. Preparing to unpack .../52-libfuse3-4_3.17.2-3_amd64.deb ... Unpacking libfuse3-4:amd64 (3.17.2-3) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../53-libgomp1_14.2.0-19_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-19) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../54-ocl-icd-libopencl1_2.3.3-1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.3-1) ... Selecting previously unselected package libllvmspirvlib19.1:amd64. Preparing to unpack .../55-libllvmspirvlib19.1_19.1.6-1_amd64.deb ... Unpacking libllvmspirvlib19.1:amd64 (19.1.6-1) ... Selecting previously unselected package mesa-opencl-icd:amd64. Preparing to unpack .../56-mesa-opencl-icd_25.0.7-2_amd64.deb ... Unpacking mesa-opencl-icd:amd64 (25.0.7-2) ... Selecting previously unselected package libhmsbeagle1v5:amd64. Preparing to unpack .../57-libhmsbeagle1v5_4.0.1+dfsg-3_amd64.deb ... Unpacking libhmsbeagle1v5:amd64 (4.0.1+dfsg-3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../58-libxau6_1%3a1.0.11-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../59-libxdmcp6_1%3a1.1.5-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../60-libxcb1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../61-libx11-data_2%3a1.8.12-1_all.deb ... Unpacking libx11-data (2:1.8.12-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../62-libx11-6_2%3a1.8.12-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.12-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../63-libxext6_2%3a1.3.4-1+b3_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b3) ... Selecting previously unselected package libxnvctrl0:amd64. Preparing to unpack .../64-libxnvctrl0_535.171.04-1+b2_amd64.deb ... Unpacking libxnvctrl0:amd64 (535.171.04-1+b2) ... Selecting previously unselected package libze1:amd64. Preparing to unpack .../65-libze1_1.20.6-1_amd64.deb ... Unpacking libze1:amd64 (1.20.6-1) ... Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../66-libhwloc15_2.12.0-4_amd64.deb ... Unpacking libhwloc15:amd64 (2.12.0-4) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../67-libhwloc-plugins_2.12.0-4_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.12.0-4) ... Selecting previously unselected package libibumad3:amd64. Preparing to unpack .../68-libibumad3_56.1-1_amd64.deb ... Unpacking libibumad3:amd64 (56.1-1) ... Selecting previously unselected package libibmad5:amd64. Preparing to unpack .../69-libibmad5_56.1-1_amd64.deb ... Unpacking libibmad5:amd64 (56.1-1) ... Selecting previously unselected package libmunge2:amd64. Preparing to unpack .../70-libmunge2_0.5.16-1_amd64.deb ... Unpacking libmunge2:amd64 (0.5.16-1) ... Selecting previously unselected package libpmix2t64:amd64. Preparing to unpack .../71-libpmix2t64_5.0.7-1_amd64.deb ... Unpacking libpmix2t64:amd64 (5.0.7-1) ... Selecting previously unselected package libucx0:amd64. Preparing to unpack .../72-libucx0_1.18.1+ds-2+b1_amd64.deb ... Unpacking libucx0:amd64 (1.18.1+ds-2+b1) ... Selecting previously unselected package libopenmpi40:amd64. Preparing to unpack .../73-libopenmpi40_5.0.7-1_amd64.deb ... Unpacking libopenmpi40:amd64 (5.0.7-1) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../74-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../75-openmpi-common_5.0.7-1_all.deb ... Unpacking openmpi-common (5.0.7-1) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../76-openmpi-bin_5.0.7-1_amd64.deb ... Unpacking openmpi-bin (5.0.7-1) ... Selecting previously unselected package mpi-default-bin. Preparing to unpack .../77-mpi-default-bin_1.18_amd64.deb ... Unpacking mpi-default-bin (1.18) ... Selecting previously unselected package ssh. Preparing to unpack .../78-ssh_1%3a10.0p1-7_all.deb ... Unpacking ssh (1:10.0p1-7) ... Selecting previously unselected package mrbayes-mpi. Preparing to unpack .../79-mrbayes-mpi_3.2.7a-7+b1_amd64.deb ... Unpacking mrbayes-mpi (3.2.7a-7+b1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up runit-helper (2.16.4) ... Setting up libpciaccess0:amd64 (0.17-3+b3) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libapparmor1:amd64 (4.1.0-1) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libclang-common-19-dev:amd64 (1:19.1.7-3+b1) ... Setting up libcbor0.10:amd64 (0.10.2-2) ... Setting up libedit2:amd64 (3.1-20250104-1) ... Setting up libibumad3:amd64 (56.1-1) ... Setting up systemd (257.7-1) ... Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' → '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' → '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' → '/usr/lib/systemd/system/systemd-pstore.service'. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. [ESC][0;1;39m/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.[ESC][0m [ESC][0;1;31m"/home" already exists and is not a directory.[ESC][0m Setting up libibmad5:amd64 (56.1-1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up libgomp1:amd64 (14.2.0-19) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libze1:amd64 (1.20.6-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libmunge2:amd64 (0.5.16-1) ... Setting up libwrap0:amd64 (7.6.q-36) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libhwloc15:amd64 (2.12.0-4) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up libnuma1:amd64 (2.0.19-1) ... Setting up sensible-utils (0.0.25) ... Setting up ocl-icd-libopencl1:amd64 (2.3.3-1) ... Setting up procps (2:4.0.4-9) ... Setting up libnl-3-200:amd64 (3.7.0-2) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (5.0.7-1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up libwtmpdb0:amd64 (0.73.0-3) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libfuse3-4:amd64 (3.17.2-3) ... Setting up libfido2-1:amd64 (1.15.0-1+b1) ... Setting up libdrm-common (2.4.124-2) ... Setting up libclc-19-dev (1:19.1.7-3) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up libllvm19:amd64 (1:19.1.7-3+b1) ... Setting up libclc-19 (1:19.1.7-3) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libllvmspirvlib19.1:amd64 (19.1.6-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libnl-route-3-200:amd64 (3.7.0-2) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up libllvm17t64:amd64 (1:17.0.6-22+b2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up ucf (3.0052) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libdrm2:amd64 (2.4.124-2) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libclang-cpp19 (1:19.1.7-3+b1) ... Setting up libdrm-amdgpu1:amd64 (2.4.124-2) ... Setting up libibverbs1:amd64 (56.1-1) ... Setting up ibverbs-providers:amd64 (56.1-1) ... Setting up openssh-client (1:10.0p1-7) ... Created symlink '/etc/systemd/user/sockets.target.wants/ssh-agent.socket' → '/usr/lib/systemd/user/ssh-agent.socket'. Setting up libdrm-intel1:amd64 (2.4.124-2) ... Setting up libhwloc-plugins:amd64 (2.12.0-4) ... Setting up libpmix2t64:amd64 (5.0.7-1) ... Setting up librdmacm1t64:amd64 (56.1-1) ... Setting up libhsakmt1:amd64 (6.2.4+ds-1) ... Setting up mesa-opencl-icd:amd64 (25.0.7-2) ... Setting up libfabric1:amd64 (2.1.0-1.1) ... Setting up openssh-sftp-server (1:10.0p1-7) ... Setting up openssh-server (1:10.0p1-7) ... Creating config file /etc/ssh/sshd_config with new version Creating SSH2 RSA key; this may take some time ... 3072 SHA256:fFo15JCwo2nMXPrTTwbdVat7/IIzjzzxD8NwtyvcL+w root@piu-slave-conova-01 (RSA) Creating SSH2 ECDSA key; this may take some time ... 256 SHA256:BWYgisqf6V8XmnNGOraYM9n0h+R3vgmKl8WTR/Em8Lc root@piu-slave-conova-01 (ECDSA) Creating SSH2 ED25519 key; this may take some time ... 256 SHA256:1rh4lqi1QK415ie8oS6bSSyJl5bG2ufvAZES/0QQqrs root@piu-slave-conova-01 (ED25519) Creating user 'sshd' (sshd user) with UID 997 and GID 65534. runit: ssh: start action denied by policy-rc.d invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Created symlink '/etc/systemd/system/sshd.service' → '/usr/lib/systemd/system/ssh.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/ssh.service' → '/usr/lib/systemd/system/ssh.service'. Created symlink '/etc/systemd/system/ssh.service.wants/sshd-keygen.service' → '/usr/lib/systemd/system/sshd-keygen.service'. Created symlink '/etc/systemd/system/sshd.service.wants/sshd-keygen.service' → '/usr/lib/systemd/system/sshd-keygen.service'. Created symlink '/etc/systemd/system/sshd@.service.wants/sshd-keygen.service' → '/usr/lib/systemd/system/sshd-keygen.service'. Created symlink '/etc/systemd/system/ssh.socket.wants/sshd-keygen.service' → '/usr/lib/systemd/system/sshd-keygen.service'. Setting up libhmsbeagle1v5:amd64 (4.0.1+dfsg-3) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... Setting up ssh (1:10.0p1-7) ... Setting up libamdhip64-5:amd64 (5.7.1-6) ... Setting up libucx0:amd64 (1.18.1+ds-2+b1) ... Setting up libopenmpi40:amd64 (5.0.7-1) ... Setting up openmpi-bin (5.0.7-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up mpi-default-bin (1.18) ... Setting up mrbayes-mpi (3.2.7a-7+b1) ... Processing triggers for libc-bin (2.41-12) ... 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', '-y', 'install', 'mrbayes-mpi'] 0m16.3s INFO: Running scripts post_install 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_install_exceptions'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_install_exceptions'] 0m16.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m16.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m16.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpbq8o5o3m to trixie-next 0m16.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main deb http://security.debian.org trixie-security main deb http://deb.debian.org/debian/ trixie-updates main deb http://deb.debian.org/debian/ trixie-proposed-updates main 0m16.9s INFO: Running scripts pre_distupgrade 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_distupgrade_exceptions'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_distupgrade_exceptions'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', 'update'] 0m17.8s DUMP: Get:1 http://security.debian.org trixie-security InRelease [43.4 kB] Hit:2 http://deb.debian.org/debian trixie InRelease Get:3 http://deb.debian.org/debian trixie-updates InRelease [47.1 kB] Get:4 http://deb.debian.org/debian trixie-proposed-updates InRelease [55.8 kB] Get:5 http://deb.debian.org/debian trixie-updates/main amd64 Packages [2432 B] Get:6 http://deb.debian.org/debian trixie-updates/main Translation-en [396 B] Get:7 http://deb.debian.org/debian trixie-proposed-updates/main amd64 Packages [7300 B] Get:8 http://security.debian.org trixie-security/main amd64 Packages [5304 B] Get:9 http://deb.debian.org/debian trixie-proposed-updates/main Translation-en [3288 B] Get:10 http://security.debian.org trixie-security/main Translation-en [6724 B] Fetched 172 kB in 0s (1382 kB/s) Reading package lists... 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', 'update'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', '-yf', 'dist-upgrade'] 0m18.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', '-yf', 'dist-upgrade'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m19.2s DUMP: 5c6a884f0339ba51c78a9d3f50b19f1b - 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'show', '--no-all-versions', 'mrbayes-mpi'] 0m19.4s DUMP: Package: mrbayes-mpi Source: mrbayes (3.2.7a-7) Version: 3.2.7a-7+b1 Installed-Size: 1620 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libhmsbeagle1v5 (>= 3.1.2+dfsg), libreadline8t64 (>= 6.0), mpi-default-bin, ssh Suggests: mpi-default, mrbayes-doc Description-en: Bayesian Inference of Phylogeny - mpi version Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. . This package offers a binary compiled for parallel computation with MPI. Description-md5: d4667b242cc8f99f098ff96397619072 Homepage: http://mrbayes.csit.fsu.edu/ Section: science Priority: optional Filename: pool/main/m/mrbayes/mrbayes-mpi_3.2.7a-7+b1_amd64.deb Size: 598092 MD5sum: e70c878c02e125a0e1d930dc9003c45c SHA256: e1140bd0ed13a75e9e76583c08824108b51723dd25f1ebf41efeeb75c117996a 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'show', '--no-all-versions', 'mrbayes-mpi'] 0m19.4s INFO: apt-cache knows about the following packages: mrbayes-mpi 0m19.4s INFO: Running scripts pre_install 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_database-server'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_database-server'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_exceptions'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_exceptions'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_extras'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_extras'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'policy'] 0m19.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie-proposed-updates/main amd64 Packages release v=13-updates,o=Debian,a=proposed-updates,n=trixie-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian trixie-updates/main amd64 Packages release v=13-updates,o=Debian,a=stable-updates,n=trixie-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org trixie-security/main amd64 Packages release v=13,o=Debian,a=stable-security,n=trixie-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.0,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'policy'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'policy', 'mrbayes-mpi'] 0m19.5s DUMP: mrbayes-mpi: Installed: 3.2.7a-7+b1 Candidate: 3.2.7a-7+b1 Version table: *** 3.2.7a-7+b1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 100 /var/lib/dpkg/status 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'policy', 'mrbayes-mpi'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', '-y', 'install', 'mrbayes-mpi'] 0m20.1s DUMP: Reading package lists... Building dependency tree... Reading state information... mrbayes-mpi is already the newest version (3.2.7a-7+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', '-y', 'install', 'mrbayes-mpi'] 0m20.1s INFO: Running scripts post_install 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_install_exceptions'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_install_exceptions'] 0m20.1s INFO: Running scripts post_distupgrade 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m20.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m20.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m21.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m21.4s INFO: Running scripts pre_install 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_database-server'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_database-server'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_exceptions'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_exceptions'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_extras'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_extras'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'policy'] 0m21.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie-proposed-updates/main amd64 Packages release v=13-updates,o=Debian,a=proposed-updates,n=trixie-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian trixie-updates/main amd64 Packages release v=13-updates,o=Debian,a=stable-updates,n=trixie-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org trixie-security/main amd64 Packages release v=13,o=Debian,a=stable-security,n=trixie-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.0,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'policy'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'policy', 'mrbayes-mpi'] 0m21.5s DUMP: mrbayes-mpi: Installed: 3.2.7a-7+b1 Candidate: 3.2.7a-7+b1 Version table: *** 3.2.7a-7+b1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 100 /var/lib/dpkg/status 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-cache', 'policy', 'mrbayes-mpi'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', '-y', 'install', 'mrbayes-mpi=3.2.7a-7+b1'] 0m22.0s DUMP: Reading package lists... Building dependency tree... Reading state information... mrbayes-mpi is already the newest version (3.2.7a-7+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', '-y', 'install', 'mrbayes-mpi=3.2.7a-7+b1'] 0m22.0s INFO: Running scripts post_install 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_install_exceptions'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_install_exceptions'] 0m22.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m22.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m23.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', '-ac', '--ignore-obsolete'] 0m25.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', '-ac', '--ignore-obsolete'] 0m25.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.5s DUMP: 0.15.9~deb12u1 0m25.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.5s INFO: Running adequate version 0.15.9~deb12u1 now. 0m25.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'mrbayes-mpi'] 0m25.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'mrbayes-mpi'] 0m25.6s INFO: Running scripts pre_remove 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_remove_exceptions'] 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/pre_remove_exceptions'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m27.6s DUMP: install ok installed adduser adduser 3.152 install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed ibverbs-providers:amd64 ibverbs-providers 56.1-1 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libamd-comgr2:amd64 libamd-comgr2 6.0+git20231212.4510c28+dfsg-3+b2 install ok installed libamdhip64-5:amd64 libamdhip64-5 5.7.1-6 install ok installed libapparmor1:amd64 libapparmor1 4.1.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcbor0.10:amd64 libcbor0.10 0.10.2-2 install ok installed libclang-common-19-dev:amd64 libclang-common-19-dev 1:19.1.7-3+b1 install ok installed libclang-cpp19 libclang-cpp19 1:19.1.7-3+b1 install ok installed libclc-19 libclc-19 1:19.1.7-3 install ok installed libclc-19-dev libclc-19-dev 1:19.1.7-3 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-3+b3 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.124-2 install ok installed libdrm-common libdrm-common 2.4.124-2 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.124-2 install ok installed libdrm2:amd64 libdrm2 2.4.124-2 install ok installed libedit2:amd64 libedit2 3.1-20250104-1 install ok installed libelf1t64:amd64 libelf1t64 0.192-4 install ok installed libevent-core-2.1-7t64:amd64 libevent-core-2.1-7t64 2.1.12-stable-10+b1 install ok installed libevent-pthreads-2.1-7t64:amd64 libevent-pthreads-2.1-7t64 2.1.12-stable-10+b1 install ok installed libexpat1:amd64 libexpat1 2.7.1-2 install ok installed libfabric1:amd64 libfabric1 2.1.0-1.1 install ok installed libffi8:amd64 libffi8 3.4.8-2 install ok installed libfido2-1:amd64 libfido2-1 1.15.0-1+b1 install ok installed libfuse3-4:amd64 libfuse3-4 3.17.2-3 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgomp1:amd64 libgomp1 14.2.0-19 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libhmsbeagle1v5:amd64 libhmsbeagle1v5 4.0.1+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhsa-runtime64-1:amd64 libhsa-runtime64-1 6.1.2-3 install ok installed libhsakmt1:amd64 libhsakmt1 6.2.4+ds-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.12.0-4 install ok installed libhwloc15:amd64 libhwloc15 2.12.0-4 install ok installed libibmad5:amd64 libibmad5 56.1-1 install ok installed libibumad3:amd64 libibumad3 56.1-1 install ok installed libibverbs1:amd64 libibverbs1 56.1-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed libllvm17t64:amd64 libllvm17t64 1:17.0.6-22+b2 install ok installed libllvm19:amd64 libllvm19 1:19.1.7-3+b1 install ok installed libllvmspirvlib19.1:amd64 libllvmspirvlib19.1 19.1.6-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libmunge2:amd64 libmunge2 0.5.16-1 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-2 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-2 install ok installed libnuma1:amd64 libnuma1 2.0.19-1 install ok installed libopenmpi40:amd64 libopenmpi40 5.0.7-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3+b3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libpmix2t64:amd64 libpmix2t64 5.0.7-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9 install ok installed libpsm2-2 libpsm2-2 11.2.185-2.1 install ok installed librdmacm1t64:amd64 librdmacm1t64 56.1-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd-shared:amd64 libsystemd-shared 257.7-1 install ok installed libsystemd0:amd64 libsystemd0 257.7-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libucx0:amd64 libucx0 1.18.1+ds-2+b1 install ok installed libudev1:amd64 libudev1 257.7-1 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libwrap0:amd64 libwrap0 7.6.q-36 install ok installed libwtmpdb0:amd64 libwtmpdb0 0.73.0-3 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-2.1 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libz3-4:amd64 libz3-4 4.13.3-1 install ok installed libze1:amd64 libze1 1.20.6-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mesa-opencl-icd:amd64 mesa-opencl-icd 25.0.7-2 install ok installed mount mount 2.41-5 install ok installed mpi-default-bin mpi-default-bin 1.18 install ok installed mrbayes-mpi mrbayes-mpi 3.2.7a-7+b1 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.3-1 install ok installed openmpi-bin openmpi-bin 5.0.7-1 install ok installed openmpi-common openmpi-common 5.0.7-1 install ok installed openssh-client openssh-client 1:10.0p1-7 install ok installed openssh-server openssh-server 1:10.0p1-7 install ok installed openssh-sftp-server openssh-sftp-server 1:10.0p1-7 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed procps procps 2:4.0.4-9 install ok installed readline-common readline-common 8.2-6 install ok installed runit-helper runit-helper 2.16.4 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.25 install ok installed sqv sqv 1.3.0-3 install ok installed ssh ssh 1:10.0p1-7 install ok installed systemd systemd 257.7-1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-4 install ok installed ucf ucf 3.0052 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', 'remove', '--allow-remove-essential', 'adduser', 'ibverbs-providers:amd64', 'libamd-comgr2:amd64', 'libamdhip64-5:amd64', 'libapparmor1:amd64', 'libcbor0.10:amd64', 'libclang-common-19-dev:amd64', 'libclang-cpp19', 'libclc-19', 'libclc-19-dev', 'libcom-err2:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfido2-1:amd64', 'libfuse3-4:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhmsbeagle1v5:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libllvm17t64:amd64', 'libllvm19:amd64', 'libllvmspirvlib19.1:amd64', 'libmunge2:amd64', 'libncursesw6:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpmix2t64:amd64', 'libproc2-0:amd64', 'libpsm2-2', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libsystemd-shared:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libucx0:amd64', 'libwrap0:amd64', 'libwtmpdb0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'mesa-opencl-icd:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-server', 'openssh-sftp-server', 'procps', 'readline-common', 'runit-helper', 'sensible-utils', 'ssh', 'systemd', 'ucf', 'mrbayes-mpi'] 0m29.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser ibverbs-providers libamd-comgr2 libamdhip64-5 libapparmor1 libcbor0.10 libclang-common-19-dev libclang-cpp19 libclc-19 libclc-19-dev libcom-err2 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libfabric1 libffi8 libfido2-1 libfuse3-4 libgomp1 libgssapi-krb5-2 libhmsbeagle1v5 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm17t64 libllvm19 libllvmspirvlib19.1 libmunge2 libncursesw6 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libpmix2t64 libproc2-0 libpsm2-2 librdmacm1t64 libreadline8t64 libsystemd-shared libtext-charwidth-perl libtext-wrapi18n-perl libucx0 libwrap0 libwtmpdb0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libz3-4 libze1 mesa-opencl-icd mpi-default-bin mrbayes-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-server openssh-sftp-server procps readline-common runit-helper sensible-utils ssh systemd ucf 0 upgraded, 0 newly installed, 85 to remove and 0 not upgraded. After this operation, 764 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8164 files and directories currently installed.) Removing mrbayes-mpi (3.2.7a-7+b1) ... Removing mpi-default-bin (1.18) ... Removing openmpi-bin (5.0.7-1) ... Removing libopenmpi40:amd64 (5.0.7-1) ... Removing libucx0:amd64 (1.18.1+ds-2+b1) ... Removing libfabric1:amd64 (2.1.0-1.1) ... Removing ibverbs-providers:amd64 (56.1-1) ... Removing librdmacm1t64:amd64 (56.1-1) ... Removing libibverbs1:amd64 (56.1-1) ... Removing ssh (1:10.0p1-7) ... Removing libamdhip64-5:amd64 (5.7.1-6) ... Removing libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Removing openssh-server (1:10.0p1-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing systemd (257.7-1) ... Removing libapparmor1:amd64 (4.1.0-1) ... Removing openssh-sftp-server (1:10.0p1-7) ... Removing libhmsbeagle1v5:amd64 (4.0.1+dfsg-3) ... Removing mesa-opencl-icd:amd64 (25.0.7-2) ... Removing libclc-19 (1:19.1.7-3) ... Removing libclang-common-19-dev:amd64 (1:19.1.7-3+b1) ... Removing libclang-cpp19 (1:19.1.7-3+b1) ... Removing libclc-19-dev (1:19.1.7-3) ... Removing libhsa-runtime64-1:amd64 (6.1.2-3) ... Removing libhsakmt1:amd64 (6.2.4+ds-1) ... Removing libdrm-amdgpu1:amd64 (2.4.124-2) ... Removing libdrm-intel1:amd64 (2.4.124-2) ... Removing libdrm2:amd64 (2.4.124-2) ... Removing libdrm-common (2.4.124-2) ... Removing libllvmspirvlib19.1:amd64 (19.1.6-1) ... Removing libllvm19:amd64 (1:19.1.7-3+b1) ... Removing libllvm17t64:amd64 (1:17.0.6-22+b2) ... Removing libelf1t64:amd64 (0.192-4) ... Removing libpmix2t64:amd64 (5.0.7-1) ... Removing libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Removing libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Removing libexpat1:amd64 (2.7.1-2) ... Removing libffi8:amd64 (3.4.8-2) ... Removing libfuse3-4:amd64 (3.17.2-3) ... Removing libgomp1:amd64 (14.2.0-19) ... Removing libhwloc-plugins:amd64 (2.12.0-4) ... Removing libhwloc15:amd64 (2.12.0-4) ... Removing libibmad5:amd64 (56.1-1) ... Removing libibumad3:amd64 (56.1-1) ... Removing libmunge2:amd64 (0.5.16-1) ... Removing ucf (3.0052) ... Removing procps (2:4.0.4-9) ... Removing libncursesw6:amd64 (6.5+20250216-2) ... Removing libnl-route-3-200:amd64 (3.7.0-2) ... Removing libnl-3-200:amd64 (3.7.0-2) ... Removing libpsm2-2 (11.2.185-2.1) ... Removing libnuma1:amd64 (2.0.19-1) ... Removing libpciaccess0:amd64 (0.17-3+b3) ... Removing libproc2-0:amd64 (2:4.0.4-9) ... Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsystemd-shared:amd64 (257.7-1) ... Removing libtext-wrapi18n-perl (0.06-10) ... Removing libtext-charwidth-perl:amd64 (0.04-11+b4) ... Removing libwrap0:amd64 (7.6.q-36) ... Removing libwtmpdb0:amd64 (0.73.0-3) ... Removing libxnvctrl0:amd64 (535.171.04-1+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing libx11-6:amd64 (2:1.8.12-1) ... Removing libx11-data (2:1.8.12-1) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Removing libz3-4:amd64 (4.13.3-1) ... Removing libze1:amd64 (1.20.6-1) ... Removing ocl-icd-libopencl1:amd64 (2.3.3-1) ... Removing openmpi-common (5.0.7-1) ... Removing readline-common (8.2-6) ... Removing runit-helper (2.16.4) ... Removing sensible-utils (0.0.25) ... Removing openssh-client (1:10.0p1-7) ... Removing adduser (3.152) ... Removing libfido2-1:amd64 (1.15.0-1+b1) ... Removing libcbor0.10:amd64 (0.10.2-2) ... Removing libgssapi-krb5-2:amd64 (1.21.3-5) ... Removing libkrb5-3:amd64 (1.21.3-5) ... Removing libcom-err2:amd64 (1.47.2-3+b3) ... Removing libedit2:amd64 (3.1-20250104-1) ... Removing libk5crypto3:amd64 (1.21.3-5) ... Removing libkeyutils1:amd64 (1.6.3-6) ... Removing libkrb5support0:amd64 (1.21.3-5) ... Processing triggers for libc-bin (2.41-12) ... 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', 'remove', '--allow-remove-essential', 'adduser', 'ibverbs-providers:amd64', 'libamd-comgr2:amd64', 'libamdhip64-5:amd64', 'libapparmor1:amd64', 'libcbor0.10:amd64', 'libclang-common-19-dev:amd64', 'libclang-cpp19', 'libclc-19', 'libclc-19-dev', 'libcom-err2:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfido2-1:amd64', 'libfuse3-4:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhmsbeagle1v5:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libllvm17t64:amd64', 'libllvm19:amd64', 'libllvmspirvlib19.1:amd64', 'libmunge2:amd64', 'libncursesw6:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpmix2t64:amd64', 'libproc2-0:amd64', 'libpsm2-2', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libsystemd-shared:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libucx0:amd64', 'libwrap0:amd64', 'libwtmpdb0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'mesa-opencl-icd:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-server', 'openssh-sftp-server', 'procps', 'readline-common', 'runit-helper', 'sensible-utils', 'ssh', 'systemd', 'ucf', 'mrbayes-mpi'] 0m29.3s INFO: Running scripts post_remove 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_remove_exceptions'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_remove_exceptions'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg', '--purge', 'adduser', 'ibverbs-providers:amd64', 'libamd-comgr2:amd64', 'libamdhip64-5:amd64', 'libapparmor1:amd64', 'libcbor0.10:amd64', 'libclang-common-19-dev:amd64', 'libclang-cpp19', 'libclc-19', 'libclc-19-dev', 'libcom-err2:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfido2-1:amd64', 'libfuse3-4:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhmsbeagle1v5:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libllvm17t64:amd64', 'libllvm19:amd64', 'libllvmspirvlib19.1:amd64', 'libmunge2:amd64', 'libncursesw6:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpmix2t64:amd64', 'libproc2-0:amd64', 'libpsm2-2', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libsystemd-shared:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libucx0:amd64', 'libwrap0:amd64', 'libwtmpdb0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'mesa-opencl-icd:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-server', 'openssh-sftp-server', 'procps', 'readline-common', 'runit-helper', 'sensible-utils', 'ssh', 'systemd', 'ucf'] 0m30.0s DUMP: (Reading database ... 5002 files and directories currently installed.) Purging configuration files for adduser (3.152) ... Purging configuration files for ibverbs-providers:amd64 (56.1-1) ... dpkg: warning: ignoring request to remove libamd-comgr2 which isn't installed dpkg: warning: ignoring request to remove libamdhip64-5 which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libcbor0.10 which isn't installed dpkg: warning: ignoring request to remove libclang-common-19-dev which isn't installed dpkg: warning: ignoring request to remove libclang-cpp19 which isn't installed dpkg: warning: ignoring request to remove libclc-19 which isn't installed dpkg: warning: ignoring request to remove libclc-19-dev which isn't installed dpkg: warning: ignoring request to remove libcom-err2 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libfuse3-4 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ... dpkg: warning: ignoring request to remove libhmsbeagle1v5 which isn't installed dpkg: warning: ignoring request to remove libhsa-runtime64-1 which isn't installed dpkg: warning: ignoring request to remove libhsakmt1 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibmad5 which isn't installed dpkg: warning: ignoring request to remove libibumad3 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libllvm17t64 which isn't installed dpkg: warning: ignoring request to remove libllvm19 which isn't installed dpkg: warning: ignoring request to remove libllvmspirvlib19.1 which isn't installed dpkg: warning: ignoring request to remove libmunge2 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.7.0-2) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi40 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpmix2t64 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove librdmacm1t64 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove libsystemd-shared which isn't installed dpkg: warning: ignoring request to remove libtext-charwidth-perl which isn't installed dpkg: warning: ignoring request to remove libtext-wrapi18n-perl which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed Purging configuration files for libwrap0:amd64 (7.6.q-36) ... dpkg: warning: ignoring request to remove libwtmpdb0 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove libze1 which isn't installed Purging configuration files for mesa-opencl-icd:amd64 (25.0.7-2) ... dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openmpi-bin (5.0.7-1) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:10.0p1-7) ... Purging configuration files for openssh-server (1:10.0p1-7) ... dpkg: warning: ignoring request to remove openssh-sftp-server which isn't installed Purging configuration files for procps (2:4.0.4-9) ... Purging configuration files for readline-common (8.2-6) ... dpkg: warning: ignoring request to remove runit-helper which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove ssh which isn't installed Purging configuration files for systemd (257.7-1) ... Purging configuration files for ucf (3.0052) ... 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg', '--purge', 'adduser', 'ibverbs-providers:amd64', 'libamd-comgr2:amd64', 'libamdhip64-5:amd64', 'libapparmor1:amd64', 'libcbor0.10:amd64', 'libclang-common-19-dev:amd64', 'libclang-cpp19', 'libclc-19', 'libclc-19-dev', 'libcom-err2:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfido2-1:amd64', 'libfuse3-4:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhmsbeagle1v5:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libllvm17t64:amd64', 'libllvm19:amd64', 'libllvmspirvlib19.1:amd64', 'libmunge2:amd64', 'libncursesw6:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpmix2t64:amd64', 'libproc2-0:amd64', 'libpsm2-2', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libsystemd-shared:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libucx0:amd64', 'libwrap0:amd64', 'libwtmpdb0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'mesa-opencl-icd:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-server', 'openssh-sftp-server', 'procps', 'readline-common', 'runit-helper', 'sensible-utils', 'ssh', 'systemd', 'ucf'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg', '--purge', 'mrbayes-mpi'] 0m30.0s DUMP: dpkg: warning: ignoring request to remove mrbayes-mpi which isn't installed 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg', '--purge', 'mrbayes-mpi'] 0m30.0s INFO: Running scripts post_purge 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_purge_exceptions'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_purge_exceptions'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg', '--purge', '--pending'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg', '--purge', '--pending'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg', '--remove', '--pending'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg', '--remove', '--pending'] 0m30.0s INFO: Running scripts post_test 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_test_exceptions'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'tmp/scripts/post_test_exceptions'] 0m30.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m30.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg-divert', '--list'] 0m30.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'dpkg-divert', '--list'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', 'clean'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m', 'apt-get', 'clean'] 0m30.3s DEBUG: Recording chroot state 0m30.9s INFO: Warning: Package purging left files on system: /etc/default/locale -> ../locale.conf not owned /etc/vconsole.conf -> default/keyboard not owned /root/.ssh/ not owned /var/cache/private/ not owned /var/lib/private/ not owned /var/log/private/ not owned 0m31.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/shm'] 0m31.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/shm'] 0m31.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/ptmx'] 0m31.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/ptmx'] 0m31.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/pts'] 0m31.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/dev/pts'] 0m31.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/proc'] 0m31.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m/proc'] 0m31.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m31.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbq8o5o3m'] 0m31.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpbq8o5o3m 0m31.4s INFO: PASS: Upgrading between Debian distributions. 0m31.4s INFO: PASS: All tests. 0m31.4s INFO: piuparts run ends. ret=0 End: 2025-08-13 08:12:25 GMT