Start: 2018-08-30 17:41:47 UTC Package: cd-hit Version: 4.6-2012-04-25-1 Installed-Size: 1285 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgomp1 (>= 4.2.1), libstdc++6 (>= 4.4.0), perl, mpi-default-bin Description: suite of programs designed to quickly group sequences Homepage: http://weizhong-lab.ucsd.edu/cd-hit/ Description-md5: ad9ee03ef4098028c26f1091e913dcda Section: science Priority: optional Filename: pool/main/c/cd-hit/cd-hit_4.6-2012-04-25-1_amd64.deb Size: 704052 MD5sum: deb3c4d4ee28d7d3d1ae2c8107fbcb49 SHA1: 8b166bbf9bd0ef03e9eb803a30703f58bff89d9f SHA256: 3a57d053acdb67241b77c83e46759facede3b6ad1bde8606123013be7dd7b5f8 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy --no-upgrade-test --apt cd-hit=4.6-2012-04-25-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.91~201808281725~0.90-4-g9d94fd21 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy --no-upgrade-test --apt cd-hit=4.6-2012-04-25-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-8-amd64 #1 SMP Debian 4.9.110-3+deb9u4 (2018-08-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpC6OOLK 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpC6OOLK 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/run/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/run/shm'] 0m1.8s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpC6OOLK/tmp/scripts/ 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmpC6OOLK/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', 'update'] 0m4.3s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Reading package lists... 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', 'update'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.7s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.7s INFO: Running scripts post_setup 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_dummy_users'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_dummy_users'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_forbid_home'] 0m5.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_forbid_home'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m6.4s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 335 kB of archives. After this operation, 1327 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 335 kB in 0s (15.1 MB/s) Selecting previously unselected package adduser. (Reading database ... 6639 files and directories currently installed.) Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up adduser (3.113+nmu3) ... Setting up ucf (3.0025+nmu3) ... 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_zz_backports'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_setup_zz_backports'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', 'clean'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', 'clean'] 0m6.5s DEBUG: Recording chroot state 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.1s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg-divert', '--list'] 0m7.1s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg-divert', '--list'] 0m7.1s INFO: Running scripts is_testable 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/is_testable_uninstallable'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/is_testable_uninstallable'] 0m7.2s INFO: apt-cache does not know about any of the requested packages 0m7.2s INFO: Running scripts pre_test 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_test_root_password'] 0m7.2s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_test_root_password'] 0m7.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpC6OOLK'] 0m7.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpC6OOLK'] 0m8.4s DEBUG: No broken symlinks as far as we can find. 0m8.4s INFO: Running scripts pre_install 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_install_database-server'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_install_database-server'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_install_exceptions'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_install_exceptions'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_install_extras'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_install_extras'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-cache', 'show', '--no-all-versions', 'cd-hit=4.6-2012-04-25-1'] 0m9.5s DUMP: Package: cd-hit Version: 4.6-2012-04-25-1 Installed-Size: 1285 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgomp1 (>= 4.2.1), libstdc++6 (>= 4.4.0), perl, mpi-default-bin Description-en: suite of programs designed to quickly group sequences cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information. Homepage: http://weizhong-lab.ucsd.edu/cd-hit/ Description-md5: ad9ee03ef4098028c26f1091e913dcda Section: science Priority: optional Filename: pool/main/c/cd-hit/cd-hit_4.6-2012-04-25-1_amd64.deb Size: 704052 MD5sum: deb3c4d4ee28d7d3d1ae2c8107fbcb49 SHA1: 8b166bbf9bd0ef03e9eb803a30703f58bff89d9f SHA256: 3a57d053acdb67241b77c83e46759facede3b6ad1bde8606123013be7dd7b5f8 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-cache', 'show', '--no-all-versions', 'cd-hit=4.6-2012-04-25-1'] 0m9.5s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgomp1 (>= 4.2.1), libstdc++6 (>= 4.4.0), perl, mpi-default-bin 0m9.5s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpuykrIO/piuparts-depends-dummy'] 0m9.5s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpuykrIO/piuparts-depends-dummy.deb'. 0m9.5s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpuykrIO/piuparts-depends-dummy'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.6s DUMP: 0.9.7.9+deb7u7 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.6s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpuykrIO/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpC6OOLK/tmp 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg', '-i', './tmp/piuparts-depends-dummy.deb'] 0m9.6s DUMP: Selecting previously unselected package piuparts-depends-dummy. (Reading database ... 6768 files and directories currently installed.) Unpacking piuparts-depends-dummy (from .../tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on libgomp1 (>= 4.2.1); however: Package libgomp1 is not installed. piuparts-depends-dummy depends on perl; however: Package perl is not installed. piuparts-depends-dummy depends on mpi-default-bin; however: Package mpi-default-bin is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m9.6s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg', '-i', './tmp/piuparts-depends-dummy.deb'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', '-yf', 'install'] 0m11.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: libclass-isa-perl libgdbm3 libgfortran3 libgomp1 libibverbs1 libnuma1 libopenmpi1.3 libquadmath0 libswitch-perl libtorque2 mpi-default-bin openmpi-bin openmpi-common perl perl-modules Suggested packages: gfortran perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make libpod-plainer-perl Recommended packages: openmpi-checkpoint netbase The following NEW packages will be installed: libclass-isa-perl libgdbm3 libgfortran3 libgomp1 libibverbs1 libnuma1 libopenmpi1.3 libquadmath0 libswitch-perl libtorque2 mpi-default-bin openmpi-bin openmpi-common perl perl-modules 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 10.4 MB of archives. After this operation, 38.7 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main libgomp1 amd64 4.7.2-5 [27.5 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main perl-modules all 5.14.2-21+deb7u3 [3444 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main libgdbm3 amd64 1.8.3-11 [46.9 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main perl amd64 5.14.2-21+deb7u3 [4429 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libibverbs1 amd64 1.1.6-1 [35.3 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libnuma1 amd64 2.0.8~rc4-1 [33.7 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libtorque2 amd64 2.4.16+dfsg-1+deb7u4 [121 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main openmpi-common all 1.4.5-1 [101 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main openmpi-bin amd64 1.4.5-1 [166 kB] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main mpi-default-bin amd64 1.0.1 [2990 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.4 MB in 0s (29.5 MB/s) Selecting previously unselected package libgomp1:amd64. (Reading database ... 6768 files and directories currently installed.) Unpacking libgomp1:amd64 (from .../libgomp1_4.7.2-5_amd64.deb) ... Selecting previously unselected package libswitch-perl. Unpacking libswitch-perl (from .../libswitch-perl_2.16-2_all.deb) ... Selecting previously unselected package libclass-isa-perl. Unpacking libclass-isa-perl (from .../libclass-isa-perl_0.36-3_all.deb) ... Selecting previously unselected package perl-modules. Unpacking perl-modules (from .../perl-modules_5.14.2-21+deb7u3_all.deb) ... Selecting previously unselected package libgdbm3:amd64. Unpacking libgdbm3:amd64 (from .../libgdbm3_1.8.3-11_amd64.deb) ... Selecting previously unselected package perl. Unpacking perl (from .../perl_5.14.2-21+deb7u3_amd64.deb) ... Selecting previously unselected package libquadmath0:amd64. Unpacking libquadmath0:amd64 (from .../libquadmath0_4.7.2-5_amd64.deb) ... Selecting previously unselected package libgfortran3:amd64. Unpacking libgfortran3:amd64 (from .../libgfortran3_4.7.2-5_amd64.deb) ... Selecting previously unselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.6-1_amd64.deb) ... Selecting previously unselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.8~rc4-1_amd64.deb) ... Selecting previously unselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1+deb7u4_amd64.deb) ... Selecting previously unselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.5-1_amd64.deb) ... Selecting previously unselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.5-1_all.deb) ... Selecting previously unselected package openmpi-bin. Unpacking openmpi-bin (from .../openmpi-bin_1.4.5-1_amd64.deb) ... Selecting previously unselected package mpi-default-bin. Unpacking mpi-default-bin (from .../mpi-default-bin_1.0.1_amd64.deb) ... Setting up libgomp1:amd64 (4.7.2-5) ... Setting up libclass-isa-perl (0.36-3) ... Setting up libgdbm3:amd64 (1.8.3-11) ... Setting up libquadmath0:amd64 (4.7.2-5) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up libibverbs1 (1.1.6-1) ... Setting up libnuma1 (2.0.8~rc4-1) ... Setting up libtorque2 (2.4.16+dfsg-1+deb7u4) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up openmpi-common (1.4.5-1) ... Setting up openmpi-bin (1.4.5-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up mpi-default-bin (1.0.1) ... Setting up perl-modules (5.14.2-21+deb7u3) ... Setting up perl (5.14.2-21+deb7u3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up piuparts-depends-dummy (0.invalid.0) ... Setting up libswitch-perl (2.16-2) ... 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', '-yf', 'install'] 0m11.5s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m11.5s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpC6OOLK/./tmp/piuparts-depends-dummy.deb 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m11.5s DUMP: piuparts-depends-dummy install ok installed 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m11.5s DUMP: (Reading database ... 8467 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', 'clean'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', 'clean'] 0m11.5s DEBUG: Recording chroot state 0m12.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpC6OOLK'] 0m13.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpC6OOLK'] 0m13.8s DEBUG: No broken symlinks as far as we can find. 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-cache', 'policy'] 0m15.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-cache', 'policy'] 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-cache', 'policy', 'cd-hit'] 0m15.0s DUMP: cd-hit: Installed: (none) Candidate: 4.6-2012-04-25-1 Version table: 4.6-2012-04-25-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-cache', 'policy', 'cd-hit'] 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', '-y', 'install', 'cd-hit=4.6-2012-04-25-1'] 0m16.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: cd-hit 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 704 kB of archives. After this operation, 1316 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main cd-hit amd64 4.6-2012-04-25-1 [704 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 704 kB in 0s (2199 kB/s) Selecting previously unselected package cd-hit. (Reading database ... 8467 files and directories currently installed.) Unpacking cd-hit (from .../cd-hit_4.6-2012-04-25-1_amd64.deb) ... Setting up cd-hit (4.6-2012-04-25-1) ... 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', '-y', 'install', 'cd-hit=4.6-2012-04-25-1'] 0m16.1s INFO: Running scripts post_install 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_install_exceptions'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_install_exceptions'] 0m16.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpC6OOLK'] 0m17.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpC6OOLK'] 0m18.3s DEBUG: No broken symlinks as far as we can find. 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m18.3s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed cd-hit cd-hit 4.6-2012-04-25-1 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libclass-isa-perl libclass-isa-perl 0.36-3 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-11 install ok installed libgfortran3:amd64 libgfortran3 4.7.2-5 install ok installed libgomp1:amd64 libgomp1 4.7.2-5 install ok installed libibverbs1 libibverbs1 1.1.6-1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libnuma1 libnuma1 2.0.8~rc4-1 install ok installed libopenmpi1.3 libopenmpi1.3 1.4.5-1 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libquadmath0:amd64 libquadmath0 4.7.2-5 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libswitch-perl libswitch-perl 2.16-2 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libtorque2 libtorque2 2.4.16+dfsg-1+deb7u4 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed mpi-default-bin mpi-default-bin 1.0.1 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed openmpi-bin openmpi-bin 1.4.5-1 install ok installed openmpi-common openmpi-common 1.4.5-1 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl perl 5.14.2-21+deb7u3 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed perl-modules perl-modules 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m18.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', '-ac', '--ignore-obsolete'] 0m19.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', '-ac', '--ignore-obsolete'] 0m19.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.9s DUMP: 0.15.1 0m19.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.9s INFO: Running adequate version 0.15.1 now. 0m19.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'cd-hit'] 0m20.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'cd-hit'] 0m20.2s INFO: Running scripts pre_remove 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_remove_exceptions'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/pre_remove_exceptions'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', 'remove', 'libclass-isa-perl', 'perl-modules', 'libswitch-perl', 'libibverbs1', 'openmpi-bin', 'libquadmath0:amd64', 'libgdbm3:amd64', 'perl', 'openmpi-common', 'libopenmpi1.3', 'libnuma1', 'libtorque2', 'libgomp1:amd64', 'libgfortran3:amd64', 'mpi-default-bin', 'cd-hit'] 0m21.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: cd-hit libclass-isa-perl libgdbm3 libgfortran3 libgomp1 libibverbs1 libnuma1 libopenmpi1.3 libquadmath0 libswitch-perl libtorque2 mpi-default-bin openmpi-bin openmpi-common perl perl-modules 0 upgraded, 0 newly installed, 16 to remove and 0 not upgraded. After this operation, 40.1 MB disk space will be freed. (Reading database ... 8541 files and directories currently installed.) Removing cd-hit ... Removing mpi-default-bin ... Removing openmpi-bin ... Removing libopenmpi1.3 ... Removing libgfortran3:amd64 ... Removing libgomp1:amd64 ... Removing libibverbs1 ... Removing libnuma1 ... Removing libquadmath0:amd64 ... Removing libtorque2 ... Removing openmpi-common ... Removing perl ... Removing perl-modules ... Removing libswitch-perl ... Removing libclass-isa-perl ... Removing libgdbm3:amd64 ... 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', 'remove', 'libclass-isa-perl', 'perl-modules', 'libswitch-perl', 'libibverbs1', 'openmpi-bin', 'libquadmath0:amd64', 'libgdbm3:amd64', 'perl', 'openmpi-common', 'libopenmpi1.3', 'libnuma1', 'libtorque2', 'libgomp1:amd64', 'libgfortran3:amd64', 'mpi-default-bin', 'cd-hit'] 0m21.5s INFO: Running scripts post_remove 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_remove_exceptions'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_remove_exceptions'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg', '--purge', 'libclass-isa-perl', 'perl-modules', 'libswitch-perl', 'libibverbs1', 'openmpi-bin', 'libquadmath0:amd64', 'libgdbm3:amd64', 'perl', 'openmpi-common', 'libopenmpi1.3', 'libnuma1', 'libtorque2', 'libgomp1:amd64', 'libgfortran3:amd64', 'mpi-default-bin'] 0m21.6s DUMP: dpkg: warning: ignoring request to remove libclass-isa-perl which isn't installed (Reading database ... 6775 files and directories currently installed.) Removing perl-modules ... Purging configuration files for perl-modules ... dpkg: warning: ignoring request to remove libswitch-perl which isn't installed Removing libibverbs1 ... Purging configuration files for libibverbs1 ... Removing openmpi-bin ... Purging configuration files for openmpi-bin ... Removing libquadmath0:amd64 ... Purging configuration files for libquadmath0:amd64 ... Removing libgdbm3:amd64 ... Purging configuration files for libgdbm3:amd64 ... dpkg: warning: ignoring request to remove perl which isn't installed dpkg: warning: ignoring request to remove openmpi-common which isn't installed Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing libnuma1 ... Purging configuration files for libnuma1 ... Removing libtorque2 ... Purging configuration files for libtorque2 ... Removing libgomp1:amd64 ... Purging configuration files for libgomp1:amd64 ... Removing libgfortran3:amd64 ... Purging configuration files for libgfortran3:amd64 ... dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg', '--purge', 'libclass-isa-perl', 'perl-modules', 'libswitch-perl', 'libibverbs1', 'openmpi-bin', 'libquadmath0:amd64', 'libgdbm3:amd64', 'perl', 'openmpi-common', 'libopenmpi1.3', 'libnuma1', 'libtorque2', 'libgomp1:amd64', 'libgfortran3:amd64', 'mpi-default-bin'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg', '--purge', 'cd-hit'] 0m21.6s DUMP: dpkg: warning: ignoring request to remove cd-hit which isn't installed 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg', '--purge', 'cd-hit'] 0m21.6s INFO: Running scripts post_purge 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_purge_exceptions'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_purge_exceptions'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg', '--purge', '--pending'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg', '--purge', '--pending'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg', '--remove', '--pending'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg', '--remove', '--pending'] 0m21.7s INFO: Running scripts post_test 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_test_exceptions'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'tmp/scripts/post_test_exceptions'] 0m21.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpC6OOLK'] 0m22.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpC6OOLK'] 0m22.7s DEBUG: No broken symlinks as far as we can find. 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg-divert', '--list'] 0m22.7s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'dpkg-divert', '--list'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', 'clean'] 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpC6OOLK', 'apt-get', 'clean'] 0m22.8s DEBUG: Recording chroot state 0m23.9s INFO: PASS: Installation and purging test. 0m24.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/run/shm'] 0m24.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/run/shm'] 0m24.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/console'] 0m24.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/console'] 0m24.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/ptmx'] 0m24.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/ptmx'] 0m24.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/pts'] 0m24.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/dev/pts'] 0m24.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/proc'] 0m24.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpC6OOLK/proc'] 0m24.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpC6OOLK'] 0m24.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpC6OOLK'] 0m24.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpC6OOLK 0m24.7s INFO: PASS: All tests. 0m24.7s INFO: piuparts run ends. ret=0 End: 2018-08-30 17:42:12 UTC