Start: 2018-09-20 11:08:28 UTC Package: clustalw Version: 2.1+lgpl-2 Installed-Size: 860 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0) Suggests: clustalx, seaview Enhances: bioperl-run, emboss, t-coffee Description: global multiple nucleotide or peptide sequence alignment Homepage: http://www.clustal.org/ Description-md5: 633246bd8fd1b951f15985f7cbfb1909 Tag: biology::format:aln, biology::nuceleic-acids, biology::peptidic, field::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, interface::text-mode, role::program, scope::utility, use::comparing, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/c/clustalw/clustalw_2.1+lgpl-2_amd64.deb Size: 345858 MD5sum: 85ecf8c5242022aa135b9e71cd78b867 SHA1: 03d29463d277177f0bf2a303feb28e67dafe0170 SHA256: 1880cac82deaae0394413a2e0ce07e30e192c0d9083b833f6c651203394ec3d8 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy --no-upgrade-test --apt clustalw=2.1+lgpl-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.92~201809130957~0.91-23-g805ff154 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy --no-upgrade-test --apt clustalw=2.1+lgpl-2 0m0.0s INFO: Running on: Linux piu-slave-bm-a 4.9.0-8-amd64 #1 SMP Debian 4.9.110-3+deb9u4 (2018-08-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpbsVG2b 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpbsVG2b 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m2.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/proc'] 0m2.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/proc'] 0m2.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/pts'] 0m2.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/pts'] 0m2.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/ptmx'] 0m2.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/ptmx'] 0m2.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/console'] 0m2.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/console'] 0m2.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/run/shm'] 0m2.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/run/shm'] 0m2.7s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ wheezy main 0m2.7s DEBUG: Created policy-rc.d and chmodded it. 0m2.7s DEBUG: Created resolv.conf. 0m2.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpbsVG2b/tmp/scripts/ 0m2.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmpbsVG2b/tmp/scripts/ 0m2.8s INFO: Running scripts post_chroot_unpack 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', 'update'] 0m6.3s DUMP: Hit http://mirror.bm.debian.org wheezy Release.gpg Hit http://mirror.bm.debian.org wheezy Release Hit http://mirror.bm.debian.org wheezy/main amd64 Packages Hit http://mirror.bm.debian.org wheezy/main Translation-en Reading package lists... 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', 'update'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.8s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.8s INFO: Running scripts post_setup 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_dummy_users'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_dummy_users'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_experimental'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_experimental'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_forbid_home'] 0m11.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_forbid_home'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_minimize'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_minimize'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m13.2s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 335 kB of archives. After this operation, 1327 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:2 http://mirror.bm.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 335 kB in 0s (6044 kB/s) Selecting previously unselected package adduser. (Reading database ... 6639 files and directories currently installed.) Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up adduser (3.113+nmu3) ... Setting up ucf (3.0025+nmu3) ... 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_zz_backports'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_setup_zz_backports'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', 'clean'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', 'clean'] 0m13.2s DEBUG: Recording chroot state 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m15.4s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg-divert', '--list'] 0m15.4s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg-divert', '--list'] 0m15.4s INFO: Running scripts is_testable 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/is_testable_uninstallable'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/is_testable_uninstallable'] 0m15.4s INFO: apt-cache does not know about any of the requested packages 0m15.4s INFO: Running scripts pre_test 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_test_exceptions'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_test_exceptions'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_test_root_password'] 0m15.5s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_test_root_password'] 0m15.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbsVG2b'] 0m17.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbsVG2b'] 0m19.7s DEBUG: No broken symlinks as far as we can find. 0m19.7s INFO: Running scripts pre_install 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_install_database-server'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_install_database-server'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_install_exceptions'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_install_exceptions'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_install_extras'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_install_extras'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-cache', 'show', '--no-all-versions', 'clustalw=2.1+lgpl-2'] 0m21.8s DUMP: Package: clustalw Version: 2.1+lgpl-2 Installed-Size: 860 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0) Suggests: clustalx, seaview Enhances: bioperl-run, emboss, t-coffee Description-en: global multiple nucleotide or peptide sequence alignment This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal?W is very well accepted. . The output of Clustal?W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal?X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM. Homepage: http://www.clustal.org/ Description-md5: 633246bd8fd1b951f15985f7cbfb1909 Tag: biology::format:aln, biology::nuceleic-acids, biology::peptidic, field::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, interface::text-mode, role::program, scope::utility, use::comparing, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/c/clustalw/clustalw_2.1+lgpl-2_amd64.deb Size: 345858 MD5sum: 85ecf8c5242022aa135b9e71cd78b867 SHA1: 03d29463d277177f0bf2a303feb28e67dafe0170 SHA256: 1880cac82deaae0394413a2e0ce07e30e192c0d9083b833f6c651203394ec3d8 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-cache', 'show', '--no-all-versions', 'clustalw=2.1+lgpl-2'] 0m21.8s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0) 0m21.8s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpQwcV1y/piuparts-depends-dummy'] 0m21.9s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpQwcV1y/piuparts-depends-dummy.deb'. 0m21.9s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpQwcV1y/piuparts-depends-dummy'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m21.9s DUMP: 0.9.7.9+deb7u7 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m21.9s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpQwcV1y/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpbsVG2b/tmp 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg', '-i', './tmp/piuparts-depends-dummy.deb'] 0m22.0s DUMP: Selecting previously unselected package piuparts-depends-dummy. (Reading database ... 6768 files and directories currently installed.) Unpacking piuparts-depends-dummy (from .../tmp/piuparts-depends-dummy.deb) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg', '-i', './tmp/piuparts-depends-dummy.deb'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', '-yf', 'install'] 0m23.0s DUMP: Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', '-yf', 'install'] 0m23.0s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m23.0s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpbsVG2b/./tmp/piuparts-depends-dummy.deb 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m23.1s DUMP: piuparts-depends-dummy install ok installed 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m23.1s DUMP: (Reading database ... 6768 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', 'clean'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', 'clean'] 0m23.2s DEBUG: Recording chroot state 0m26.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbsVG2b'] 0m27.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbsVG2b'] 0m29.4s DEBUG: No broken symlinks as far as we can find. 0m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-cache', 'policy'] 0m31.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ wheezy/main Translation-en 500 http://mirror.bm.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-cache', 'policy'] 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-cache', 'policy', 'clustalw'] 0m31.0s DUMP: clustalw: Installed: (none) Candidate: 2.1+lgpl-2 Version table: 2.1+lgpl-2 0 500 http://mirror.bm.debian.org/debian/ wheezy/main amd64 Packages 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-cache', 'policy', 'clustalw'] 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', '-y', 'install', 'clustalw=2.1+lgpl-2'] 0m32.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: clustalx seaview The following NEW packages will be installed: clustalw 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 346 kB of archives. After this operation, 881 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ wheezy/main clustalw amd64 2.1+lgpl-2 [346 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 346 kB in 0s (3767 kB/s) Selecting previously unselected package clustalw. (Reading database ... 6768 files and directories currently installed.) Unpacking clustalw (from .../clustalw_2.1+lgpl-2_amd64.deb) ... Setting up clustalw (2.1+lgpl-2) ... 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', '-y', 'install', 'clustalw=2.1+lgpl-2'] 0m32.5s INFO: Running scripts post_install 0m32.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_install_exceptions'] 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_install_exceptions'] 0m32.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbsVG2b'] 0m34.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbsVG2b'] 0m37.5s DEBUG: No broken symlinks as far as we can find. 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m37.6s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed clustalw clustalw 2.1+lgpl-2 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m38.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', '-ac', '--ignore-obsolete'] 0m40.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', '-ac', '--ignore-obsolete'] 0m40.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m40.2s DUMP: 0.15.1 0m40.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m40.2s INFO: Running adequate version 0.15.1 now. 0m40.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'clustalw'] 0m40.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'clustalw'] 0m40.4s INFO: Running scripts pre_remove 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_remove_exceptions'] 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/pre_remove_exceptions'] 0m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', 'remove', 'clustalw'] 0m43.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: clustalw 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 881 kB disk space will be freed. (Reading database ... 6785 files and directories currently installed.) Removing clustalw ... 0m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', 'remove', 'clustalw'] 0m43.0s INFO: Running scripts post_remove 0m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_remove_exceptions'] 0m43.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_remove_exceptions'] 0m43.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_remove_extras'] 0m43.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_remove_extras'] 0m43.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg', '--purge', 'clustalw'] 0m43.2s DUMP: (Reading database ... 6768 files and directories currently installed.) Removing clustalw ... Purging configuration files for clustalw ... 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg', '--purge', 'clustalw'] 0m43.2s INFO: Running scripts post_purge 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_purge_exceptions'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_purge_exceptions'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg', '--purge', '--pending'] 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg', '--purge', '--pending'] 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg', '--remove', '--pending'] 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg', '--remove', '--pending'] 0m43.3s INFO: Running scripts post_test 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_test_exceptions'] 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'tmp/scripts/post_test_exceptions'] 0m43.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbsVG2b'] 0m45.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbsVG2b'] 0m47.4s DEBUG: No broken symlinks as far as we can find. 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg-divert', '--list'] 0m47.4s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'dpkg-divert', '--list'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', 'clean'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbsVG2b', 'apt-get', 'clean'] 0m47.4s DEBUG: Recording chroot state 0m50.7s INFO: PASS: Installation and purging test. 0m52.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/run/shm'] 0m52.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/run/shm'] 0m52.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/console'] 0m52.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/console'] 0m52.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/ptmx'] 0m52.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/ptmx'] 0m52.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/pts'] 0m52.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/dev/pts'] 0m52.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/proc'] 0m52.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbsVG2b/proc'] 0m52.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbsVG2b'] 0m53.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbsVG2b'] 0m53.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpbsVG2b 0m53.1s INFO: PASS: All tests. 0m53.1s INFO: piuparts run ends. ret=0 End: 2018-09-20 11:09:22 UTC