Start: 2023-03-22 19:17:02 GMT [wheezy] Package: infernal Version: 1.0.2-2 Installed-Size: 10427 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.3) Description: inference of RNA secondary structural alignments Homepage: http://infernal.janelia.org/ Description-md5: 8fea02bce7585a48494d435d613fbc08 Tag: biology::nuceleic-acids, field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, use::analysing Section: science Priority: optional Filename: pool/main/i/infernal/infernal_1.0.2-2_amd64.deb Size: 4858556 MD5sum: c7a36533d806689fbe4e8d06aa0be2a5 SHA1: 2d963a59f040c387186afa43e47f70f6c6a25447 SHA256: 600093dd2f1f2097ca717bedf4df7fd861eda055f4f7fd4c255ea6e07b1993e8 [jessie-lts] Package: infernal Version: 1.1.1-2 Installed-Size: 20620 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14) Description: inference of RNA secondary structural alignments Homepage: http://infernal.janelia.org/ Description-md5: 0fa26f15adcc8d61cdb1b817c872c7ec Tag: field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, use::analysing Section: science Priority: optional Filename: pool/main/i/infernal/infernal_1.1.1-2_amd64.deb Size: 1862438 MD5sum: e08c3d12419bf0e6e92617aee901c88e SHA1: 52e7a2863cf2963f1ab9317fdffee08fa20d1294 SHA256: 8b2461e38a82443d93e943284c11fc989518d3b394630462635a874195c5fd75 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie-lts -S /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie-lts/reference-chroot-metadata.dat --apt infernal=1.1.1-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie-lts -S /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie-lts/reference-chroot-metadata.dat --apt infernal=1.1.1-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpj_qnoxj0 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpj_qnoxj0 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/console'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/console'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/run/shm'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/run/shm'] 0m1.5s DEBUG: sources.list: deb http://archive.debian.org/debian wheezy main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpj_qnoxj0/tmp/scripts/ 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpj_qnoxj0/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DUMP: Creating /etc/apt/apt.conf.d/unauthenticated-wheezy ... # The Release file is not getting updated. Acquire::Check-Valid-Until "false"; 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0', 'apt-get', 'update'] 0m1.6s DUMP: E: Method http has died unexpectedly! E: Sub-process http received a segmentation fault. 0m1.6s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0', 'apt-get', 'update'] E: Method http has died unexpectedly! E: Sub-process http received a segmentation fault. 0m1.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/run/shm'] 0m1.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/run/shm'] 0m1.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/console'] 0m1.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/console'] 0m1.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/ptmx'] 0m1.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/pts'] 0m1.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/dev/pts'] 0m1.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/proc'] 0m2.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0/proc'] 0m2.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0'] 0m2.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpj_qnoxj0'] 0m2.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpj_qnoxj0 0m2.0s ERROR: piuparts run ends. ret=1 End: 2023-03-22 19:17:04 GMT