Start: 2023-03-22 19:17:21 GMT [wheezy] Package: mafft Version: 6.864-1 Installed-Size: 7642 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.7) Pre-Depends: dpkg (>= 1.15.6) Recommends: blast2, lynx, ruby Enhances: t-coffee Description: Multiple alignment program for amino acid or nucleotide sequences Homepage: http://mafft.cbrc.jp/alignment/software/ Description-md5: a65c32f641729a8e070bd5f7c691875a Tag: biology::format:aln, biology::nuceleic-acids, biology::peptidic, field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, scope::utility, use::comparing, works-with-format::plaintext Section: science Priority: optional Filename: pool/main/m/mafft/mafft_6.864-1_amd64.deb Size: 799114 MD5sum: 65e7ec7f4aebf1f19afa2873a88885cb SHA1: 5fbb34a400864e12ab5221ef574a1dcc637d8743 SHA256: 95ca4e0cb1bb9167cb6e30a212439494aebb7fc808479b8b6f5aad8211335a26 [jessie-lts] Package: mafft Version: 7.205-1 Installed-Size: 7701 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), perl Recommends: blast2, libwww-perl, lynx, ruby Enhances: t-coffee Description: Multiple alignment program for amino acid or nucleotide sequences Homepage: http://mafft.cbrc.jp/alignment/software/ Description-md5: a65c32f641729a8e070bd5f7c691875a Tag: biology::format:aln, biology::peptidic, field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, scope::utility, use::comparing, works-with-format::plaintext Section: science Priority: optional Filename: pool/main/m/mafft/mafft_7.205-1_amd64.deb Size: 775454 MD5sum: 15759d89c4b01ba4cef2e522b85e1e44 SHA1: 5736c0b33d4da1fdff0bee9dee4e151fffc1371b SHA256: 9130c426d486646185b4f3f799cfe3e5c3c3cd35cf638aba31c87abb187ad2f8 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie-lts -S /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie-lts/reference-chroot-metadata.dat --apt mafft=7.205-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie-lts -S /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie-lts/reference-chroot-metadata.dat --apt mafft=7.205-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpk3exqdhw 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpk3exqdhw 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/console'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/console'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/run/shm'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/run/shm'] 0m1.5s DEBUG: sources.list: deb http://archive.debian.org/debian wheezy main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpk3exqdhw/tmp/scripts/ 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpk3exqdhw/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DUMP: Creating /etc/apt/apt.conf.d/unauthenticated-wheezy ... # The Release file is not getting updated. Acquire::Check-Valid-Until "false"; 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw', 'apt-get', 'update'] 0m1.6s DUMP: E: Method http has died unexpectedly! E: Sub-process http received a segmentation fault. 0m1.6s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw', 'apt-get', 'update'] E: Method http has died unexpectedly! E: Sub-process http received a segmentation fault. 0m1.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/run/shm'] 0m1.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/run/shm'] 0m1.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/console'] 0m1.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/console'] 0m1.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/ptmx'] 0m1.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/pts'] 0m1.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/dev/pts'] 0m1.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/proc'] 0m2.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw/proc'] 0m2.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw'] 0m2.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpk3exqdhw'] 0m2.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpk3exqdhw 0m2.0s ERROR: piuparts run ends. ret=1 End: 2023-03-22 19:17:24 GMT