Start: 2019-02-16 01:13:47 UTC [wheezy] Package: nwchem Version: 6.1-6 Installed-Size: 58285 Maintainer: Debichem Team Architecture: amd64 Depends: mpi-default-bin, nwchem-data (= 6.1-6), libc6 (>= 2.7), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.6), libopenmpi1.3, libquadmath0 (>= 4.6) Description: High-performance computational chemistry software Homepage: http://www.nwchem-sw.org Description-md5: dfcc0e06a4c1541597d48a663d8e6511 Tag: field::chemistry, role::program Section: science Priority: optional Filename: pool/main/n/nwchem/nwchem_6.1-6_amd64.deb Size: 14094474 MD5sum: 8de191225cc084fc1a02410b3e222c25 SHA1: d345679a9cf9e6189a7c6b21c2d2eee181b6f50e SHA256: 4322205b787656964434b14554d3727b9fc0e3aa6af8078985463a89134e44fb [jessie-lts] Package: nwchem Version: 6.5+r26243-4 Installed-Size: 65331 Maintainer: Debichem Team Architecture: amd64 Depends: mpi-default-bin, nwchem-data (= 6.5+r26243-4), libc6 (>= 2.16), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.6), libopenmpi1.6, libpython2.7 (>= 2.7), libquadmath0 (>= 4.6), zlib1g (>= 1:1.2.0) Description: High-performance computational chemistry software Homepage: http://www.nwchem-sw.org Description-md5: 0725f49597df8feadaf02ebba3676ac2 Tag: field::chemistry, role::program Section: science Priority: optional Filename: pool/main/n/nwchem/nwchem_6.5+r26243-4_amd64.deb Size: 10930508 MD5sum: 599d1b3009e65f69d26f22a4e4bd8bab SHA1: bd76e58ea0d1b4f0a7641c766156b72330f1ec0e SHA256: 7cb2b22591cd94c07e8a54040cabdc090f25a7dcfd31e21b6eca6a35fdf5a510 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie-lts -B reference-chroot-metadata.dat --apt nwchem=6.5+r26243-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.98~201902141516~0.97-23-ga308323a starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie-lts -B reference-chroot-metadata.dat --apt nwchem=6.5+r26243-4 0m0.0s INFO: Running on: Linux piu-slave-bm-a 4.9.0-8-amd64 #1 SMP Debian 4.9.130-2 (2018-10-27) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp8k3jQD 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp8k3jQD 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/proc'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/proc'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/pts'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/pts'] 0m2.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/ptmx'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/ptmx'] 0m2.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/console'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/console'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/run/shm'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/run/shm'] 0m2.3s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ wheezy main 0m2.3s DEBUG: Created policy-rc.d and chmodded it. 0m2.3s DEBUG: Created resolv.conf. 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp8k3jQD/tmp/scripts/ 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmp8k3jQD/tmp/scripts/ 0m2.3s INFO: Running scripts post_chroot_unpack 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', 'update'] 0m5.1s DUMP: Hit http://mirror.bm.debian.org wheezy Release.gpg Hit http://mirror.bm.debian.org wheezy Release Hit http://mirror.bm.debian.org wheezy/main amd64 Packages Hit http://mirror.bm.debian.org wheezy/main Translation-en Reading package lists... 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', 'update'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', '-yf', 'dist-upgrade'] 0m5.6s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', '-yf', 'dist-upgrade'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s INFO: Running scripts post_setup 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_dummy_users'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_dummy_users'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_experimental'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_experimental'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_forbid_home'] 0m7.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_forbid_home'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m8.5s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: ucf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 70.8 kB of archives. After this operation, 236 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.8 kB in 0s (6715 kB/s) Selecting previously unselected package ucf. (Reading database ... 6639 files and directories currently installed.) Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up ucf (3.0025+nmu3) ... 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_minimize'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_minimize'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_zz_backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_setup_zz_backports'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DUMP: install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m9.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 0m10.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 0m10.8s INFO: Running scripts is_testable 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/is_testable_uninstallable'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/is_testable_uninstallable'] 0m10.8s INFO: Running scripts pre_test 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_test_exceptions'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_test_exceptions'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_test_root_password'] 0m10.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_test_root_password'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'show', '--no-all-versions', 'nwchem'] 0m10.9s DUMP: Package: nwchem Version: 6.1-6 Installed-Size: 58285 Maintainer: Debichem Team Architecture: amd64 Depends: mpi-default-bin, nwchem-data (= 6.1-6), libc6 (>= 2.7), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.6), libopenmpi1.3, libquadmath0 (>= 4.6) Description-en: High-performance computational chemistry software NWCHem is a computational chemistry program package. It provides methods which are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters. . NWChem can handle: . * Molecular electronic structure methods using gaussian basis functions for high-accuracy calculations of molecules * Pseudopotentials plane-wave electronic structure methods for calculating molecules, liquids, crystals, surfaces, semi-conductors or metals * Ab-initio and classical molecular dynamics simulations * Mixed quantum-classical simulations * Parallel scaling to thousands of processors . Features include: * Molecular electronic structure methods, analytic second derivatives: - Restricted/unrestricted Hartree-Fock (RHF, UHF) - Restricted Density Functional Theory (DFT) using many local, non-local (gradient-corrected) or hybrid (local, non-local, and HF) exchange-correlation potentials * Molecular electronic structure methods, analytic gradients: - Restricted open-shell Hartree-Fock (ROHF) - Unrestricted Density Functional Theory (DFT) - Second-order Moeller-Plesset perturbation theory (MP2), using RHF and UHF reference - Complete active space SCF (CASSCF) * Molecular electronic structure methods, single-point energies: - MP2 with resolution of the identity integral approximation (RI-MP2), using RHF and UHF reference - Coupled cluster singles and doubles, triples or pertubative triples (CCSD, CCSDT, CCSD(T)), with RHF and UHF reference - Configuration interaction (CISD, CISDT, and CISDTQ) - Second-order approximate coupled-cluster singles doubles (CC2) * Further molecular electronic structure features: - Geometry optimization including transition state searches, constraints and minimum energy paths - Vibrational frequencies - Equation-of-motion (EOM)-CCSD, EOM-CCSDT, EOM-CCSD(T), CC2, Configuration-Interaction singles (CIS), time-dependent HF (TDHF) and TDDFT, for excited states with RHF, UHF, RDFT, or UDFT reference - Solvatisation using the Conductor-like screening model (COSMO) for RHF, ROHF and DFT - Hybrid calculations using the two- and three-layer ONIOM method - Relativistic effects via spin-free and spin-orbit one-electron Douglas-Kroll and zeroth-order regular approximations (ZORA) and one-electron spin-orbit effects for DFT via spin-orbit potentials * Pseudopotential plane-wave electronic structure: - Pseudopotential Plane-Wave (PSPW), Projector Augmented Wave (PAW) or band structure methods for calculating molecules, liquids, crystals, surfaces, semi-conductors or metals - Geometry/unit cell optimization including transition state searches - Vibrational frequencies - LDA, PBE96, and PBE0 exchange-correlation potentials (restricted and unrestricted) - SIC, pert-OEP, Hartree-Fock, and hybrid functionals (restricted and unrestricted) - Hamann, Troullier-Martins and Hartwigsen-Goedecker-Hutter norm-conserving pseudopotentials with semicore corrections - Wavefunction, density, electrostatic and Wannier plotting - Band structure and density of states generation * Car-Parrinello ab-initio molecular dynamics: - Constant energy and constant temperature dynamics - Verlet algorithm for integration - Geometry constraints in cartesian coordinates * Classical molecular dynamics: - Single configuration energy evaluation - Energy minimization - Molecular dynamics simulation - Free energy simulation (multistep thermodynamic perturbation (MSTP) or multiconfiguration thermodynamic integration (MCTI) methods with options of single and/or dual topologies, double wide sampling, and separation- shifted scaling) - Force fields providing effective pair potentials, first order polarization, self consistent polarization, smooth particle mesh Ewald (SPME), periodic boundary conditions and SHAKE constraints * Mixed quantum-classical: - Mixed quantum-mechanics and molecular-mechanics (QM/MM) minimizations and molecular dynamics simulations - Quantum molecular dynamics simulation by using any of the quantum mechanical methods capable of returning gradients. Homepage: http://www.nwchem-sw.org Description-md5: dfcc0e06a4c1541597d48a663d8e6511 Tag: field::chemistry, role::program Section: science Priority: optional Filename: pool/main/n/nwchem/nwchem_6.1-6_amd64.deb Size: 14094474 MD5sum: 8de191225cc084fc1a02410b3e222c25 SHA1: d345679a9cf9e6189a7c6b21c2d2eee181b6f50e SHA256: 4322205b787656964434b14554d3727b9fc0e3aa6af8078985463a89134e44fb 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'show', '--no-all-versions', 'nwchem'] 0m10.9s INFO: apt-cache knows about the following packages: nwchem 0m10.9s INFO: Running scripts pre_install 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_database-server'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_database-server'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_exceptions'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_exceptions'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_extras'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_extras'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'policy'] 0m11.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ wheezy/main Translation-en 500 http://mirror.bm.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'policy'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'policy', 'nwchem'] 0m11.1s DUMP: nwchem: Installed: (none) Candidate: 6.1-6 Version table: 6.1-6 0 500 http://mirror.bm.debian.org/debian/ wheezy/main amd64 Packages 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'policy', 'nwchem'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', '-y', 'install', 'nwchem'] 0m15.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser libgfortran3 libibverbs1 libnuma1 libopenmpi1.3 libquadmath0 libtorque2 mpi-default-bin nwchem-data openmpi-bin openmpi-common Suggested packages: perl-modules gfortran Recommended packages: openmpi-checkpoint The following NEW packages will be installed: adduser libgfortran3 libibverbs1 libnuma1 libopenmpi1.3 libquadmath0 libtorque2 mpi-default-bin nwchem nwchem-data openmpi-bin openmpi-common 0 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 26.1 MB of archives. After this operation, 104 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:2 http://mirror.bm.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:3 http://mirror.bm.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:4 http://mirror.bm.debian.org/debian/ wheezy/main libnuma1 amd64 2.0.8~rc4-1 [33.7 kB] Get:5 http://mirror.bm.debian.org/debian/ wheezy/main libtorque2 amd64 2.4.16+dfsg-1+deb7u4 [121 kB] Get:6 http://mirror.bm.debian.org/debian/ wheezy/main libibverbs1 amd64 1.1.6-1 [35.3 kB] Get:7 http://mirror.bm.debian.org/debian/ wheezy/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB] Get:8 http://mirror.bm.debian.org/debian/ wheezy/main openmpi-common all 1.4.5-1 [101 kB] Get:9 http://mirror.bm.debian.org/debian/ wheezy/main openmpi-bin amd64 1.4.5-1 [166 kB] Get:10 http://mirror.bm.debian.org/debian/ wheezy/main mpi-default-bin amd64 1.0.1 [2990 B] Get:11 http://mirror.bm.debian.org/debian/ wheezy/main nwchem-data all 6.1-6 [9326 kB] Get:12 http://mirror.bm.debian.org/debian/ wheezy/main nwchem amd64 6.1-6 [14.1 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.1 MB in 1s (20.4 MB/s) Selecting previously unselected package libquadmath0:amd64. (Reading database ... 6657 files and directories currently installed.) Unpacking libquadmath0:amd64 (from .../libquadmath0_4.7.2-5_amd64.deb) ... Selecting previously unselected package libgfortran3:amd64. Unpacking libgfortran3:amd64 (from .../libgfortran3_4.7.2-5_amd64.deb) ... Selecting previously unselected package adduser. Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ... Selecting previously unselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.8~rc4-1_amd64.deb) ... Selecting previously unselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1+deb7u4_amd64.deb) ... Selecting previously unselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.6-1_amd64.deb) ... Selecting previously unselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.5-1_amd64.deb) ... Selecting previously unselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.5-1_all.deb) ... Selecting previously unselected package openmpi-bin. Unpacking openmpi-bin (from .../openmpi-bin_1.4.5-1_amd64.deb) ... Selecting previously unselected package mpi-default-bin. Unpacking mpi-default-bin (from .../mpi-default-bin_1.0.1_amd64.deb) ... Selecting previously unselected package nwchem-data. Unpacking nwchem-data (from .../nwchem-data_6.1-6_all.deb) ... Selecting previously unselected package nwchem. Unpacking nwchem (from .../nwchem_6.1-6_amd64.deb) ... Setting up libquadmath0:amd64 (4.7.2-5) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up adduser (3.113+nmu3) ... Setting up libnuma1 (2.0.8~rc4-1) ... Setting up libtorque2 (2.4.16+dfsg-1+deb7u4) ... Setting up libibverbs1 (1.1.6-1) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up openmpi-common (1.4.5-1) ... Setting up openmpi-bin (1.4.5-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up mpi-default-bin (1.0.1) ... Setting up nwchem-data (6.1-6) ... Setting up nwchem (6.1-6) ... 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', '-y', 'install', 'nwchem'] 0m15.6s INFO: Running scripts post_install 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_install_exceptions'] 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_install_exceptions'] 0m15.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 0m17.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 0m17.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp8k3jQD to jessie-lts 0m17.1s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ jessie main deb http://security.debian.org jessie/updates main 0m17.1s INFO: Running scripts pre_distupgrade 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', 'update'] 0m23.7s DUMP: Get:1 http://mirror.bm.debian.org jessie Release.gpg [2420 B] Get:2 http://mirror.bm.debian.org jessie Release [148 kB] Get:3 http://mirror.bm.debian.org jessie/main amd64 Packages [6818 kB] Get:4 http://security.debian.org jessie/updates Release.gpg [1601 B] Get:5 http://security.debian.org jessie/updates Release [43.3 kB] Get:6 http://security.debian.org jessie/updates/main amd64 Packages [644 kB] Get:7 http://security.debian.org jessie/updates/main Translation-en [327 kB] Get:8 http://mirror.bm.debian.org jessie/main Translation-en [4581 kB] Fetched 12.6 MB in 4s (2966 kB/s) Reading package lists... 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', 'update'] 0m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', '-yf', 'dist-upgrade'] 0m51.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gcc-4.7-base libopenmpi1.3 The following NEW packages will be installed: acl dmsetup gcc-4.9-base init libaudit-common libaudit1 libcap2 libcap2-bin libcr0 libcryptsetup4 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libexpat1 libffi6 libgcrypt20 libgpg-error0 libhwloc5 libkmod2 libltdl7 libncursesw5 libopenmpi1.6 libpcre3 libprocps3 libpython2.7 libpython2.7-minimal libpython2.7-stdlib libsmartcols1 libsqlite3-0 libssl1.0.0 libsystemd0 libudev1 mime-support procps startpar systemd systemd-sysv udev The following packages will be upgraded: apt base-files base-passwd bash bsdutils coreutils dash debconf debconf-i18n debian-archive-keyring debianutils diffutils dpkg e2fslibs e2fsprogs findutils gnupg gpgv grep gzip hostname initscripts libacl1 libapt-pkg4.12 libattr1 libblkid1 libbz2-1.0 libc-bin libc6 libcomerr2 libgcc1 libgfortran3 libibverbs1 liblocale-gettext-perl liblzma5 libmount1 libncurses5 libnuma1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libquadmath0 libreadline6 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libss2 libstdc++6 libtext-charwidth-perl libtext-iconv-perl libtinfo5 libusb-0.1-4 libustr-1.0-1 libuuid1 login lsb-base mount mpi-default-bin multiarch-support ncurses-base ncurses-bin nwchem nwchem-data openmpi-bin openmpi-common passwd perl-base readline-common sed sensible-utils sysv-rc sysvinit sysvinit-utils tar tzdata ucf util-linux xz-utils zlib1g 82 upgraded, 38 newly installed, 2 to remove and 0 not upgraded. Need to get 59.6 MB of archives. After this operation, 65.7 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ jessie/main libc6 amd64 2.19-18+deb8u10 [4665 kB] Get:2 http://security.debian.org/ jessie/updates/main gcc-4.9-base amd64 4.9.2-10+deb8u2 [160 kB] Get:3 http://security.debian.org/ jessie/updates/main libstdc++6 amd64 4.9.2-10+deb8u2 [273 kB] Get:4 http://security.debian.org/ jessie/updates/main libgfortran3 amd64 4.9.2-10+deb8u2 [254 kB] Get:5 http://security.debian.org/ jessie/updates/main libgcc1 amd64 1:4.9.2-10+deb8u2 [39.4 kB] Get:6 http://mirror.bm.debian.org/debian/ jessie/main libc-bin amd64 2.19-18+deb8u10 [1281 kB] Get:7 http://security.debian.org/ jessie/updates/main libquadmath0 amd64 4.9.2-10+deb8u2 [129 kB] Get:8 http://security.debian.org/ jessie/updates/main libpython2.7-minimal amd64 2.7.9-2+deb8u2 [378 kB] Get:9 http://mirror.bm.debian.org/debian/ jessie/main libltdl7 amd64 2.4.2-1.11+b1 [45.4 kB] Get:10 http://security.debian.org/ jessie/updates/main libsqlite3-0 amd64 3.8.7.1-1+deb8u4 [439 kB] Get:11 http://mirror.bm.debian.org/debian/ jessie/main libnuma1 amd64 2.0.10-1 [32.5 kB] Get:12 http://security.debian.org/ jessie/updates/main perl-base amd64 5.20.2-3+deb8u12 [1231 kB] Get:13 http://mirror.bm.debian.org/debian/ jessie/main libhwloc5 amd64 1.10.0-3 [86.9 kB] Get:14 http://mirror.bm.debian.org/debian/ jessie/main libcr0 amd64 0.8.5-2.2 [32.7 kB] Get:15 http://mirror.bm.debian.org/debian/ jessie/main nwchem amd64 6.5+r26243-4 [10.9 MB] Get:16 http://security.debian.org/ jessie/updates/main libssl1.0.0 amd64 1.0.1t-1+deb8u10 [1048 kB] Get:17 http://security.debian.org/ jessie/updates/main libpython2.7-stdlib amd64 2.7.9-2+deb8u2 [1846 kB] Get:18 http://security.debian.org/ jessie/updates/main libpython2.7 amd64 2.7.9-2+deb8u2 [1079 kB] Get:19 http://security.debian.org/ jessie/updates/main libgcrypt20 amd64 1.6.3-2+deb8u5 [394 kB] Get:20 http://security.debian.org/ jessie/updates/main libsystemd0 amd64 215-17+deb8u9 [89.8 kB] Get:21 http://security.debian.org/ jessie/updates/main libudev1 amd64 215-17+deb8u9 [58.1 kB] Get:22 http://security.debian.org/ jessie/updates/main tzdata all 2018i-0+deb8u1 [233 kB] Get:23 http://security.debian.org/ jessie/updates/main udev amd64 215-17+deb8u9 [877 kB] Get:24 http://security.debian.org/ jessie/updates/main systemd amd64 215-17+deb8u9 [2557 kB] Get:25 http://mirror.bm.debian.org/debian/ jessie/main openmpi-bin amd64 1.6.5-9.1+deb8u1 [154 kB] Get:26 http://mirror.bm.debian.org/debian/ jessie/main libibverbs1 amd64 1.1.8-1.1 [32.2 kB] Get:27 http://mirror.bm.debian.org/debian/ jessie/main libopenmpi1.6 amd64 1.6.5-9.1+deb8u1 [1455 kB] Get:28 http://security.debian.org/ jessie/updates/main systemd-sysv amd64 215-17+deb8u9 [37.0 kB] Get:29 http://security.debian.org/ jessie/updates/main tar amd64 1.27.1-2+deb8u2 [676 kB] Get:30 http://security.debian.org/ jessie/updates/main libapt-pkg4.12 amd64 1.0.9.8.5 [792 kB] Get:31 http://mirror.bm.debian.org/debian/ jessie/main openmpi-common all 1.6.5-9.1+deb8u1 [110 kB] Get:32 http://security.debian.org/ jessie/updates/main apt amd64 1.0.9.8.5 [1109 kB] Get:33 http://mirror.bm.debian.org/debian/ jessie/main mpi-default-bin amd64 1.0.2+nmu2 [3356 B] Get:34 http://mirror.bm.debian.org/debian/ jessie/main nwchem-data all 6.5+r26243-4 [5839 kB] Get:35 http://mirror.bm.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:36 http://mirror.bm.debian.org/debian/ jessie/main libbz2-1.0 amd64 1.0.6-7+b3 [43.5 kB] Get:37 http://mirror.bm.debian.org/debian/ jessie/main libdb5.3 amd64 5.3.28-9+deb8u1 [680 kB] Get:38 http://mirror.bm.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:39 http://mirror.bm.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:40 http://mirror.bm.debian.org/debian/ jessie/main libtinfo5 amd64 5.9+20140913-1+deb8u3 [282 kB] Get:41 http://mirror.bm.debian.org/debian/ jessie/main libncurses5 amd64 5.9+20140913-1+deb8u3 [96.6 kB] Get:42 http://mirror.bm.debian.org/debian/ jessie/main libncursesw5 amd64 5.9+20140913-1+deb8u3 [123 kB] Get:43 http://mirror.bm.debian.org/debian/ jessie/main libpcre3 amd64 2:8.35-3.3+deb8u4 [322 kB] Get:44 http://mirror.bm.debian.org/debian/ jessie/main libselinux1 amd64 2.3-2 [89.8 kB] Get:45 http://mirror.bm.debian.org/debian/ jessie/main dpkg amd64 1.17.27 [2994 kB] Get:46 http://mirror.bm.debian.org/debian/ jessie/main readline-common all 6.3-8 [57.7 kB] Get:47 http://mirror.bm.debian.org/debian/ jessie/main libreadline6 amd64 6.3-8+b3 [143 kB] Get:48 http://mirror.bm.debian.org/debian/ jessie/main libtext-charwidth-perl amd64 0.04-7+b3 [10.7 kB] Get:49 http://mirror.bm.debian.org/debian/ jessie/main libtext-iconv-perl amd64 1.7-5+b2 [16.2 kB] Get:50 http://mirror.bm.debian.org/debian/ jessie/main liblocale-gettext-perl amd64 1.05-8+b1 [19.0 kB] Get:51 http://mirror.bm.debian.org/debian/ jessie/main debconf all 1.5.56+deb8u1 [167 kB] Get:52 http://mirror.bm.debian.org/debian/ jessie/main zlib1g amd64 1:1.2.8.dfsg-2+b1 [88.8 kB] Get:53 http://mirror.bm.debian.org/debian/ jessie/main base-files amd64 8+deb8u11 [78.2 kB] Get:54 http://mirror.bm.debian.org/debian/ jessie/main sensible-utils all 0.0.9+deb8u1 [10.9 kB] Get:55 http://mirror.bm.debian.org/debian/ jessie/main debianutils amd64 4.4+b1 [99.1 kB] Get:56 http://mirror.bm.debian.org/debian/ jessie/main bash amd64 4.3-11+deb8u1 [1172 kB] Get:57 http://mirror.bm.debian.org/debian/ jessie/main libgpg-error0 amd64 1.17-3 [94.9 kB] Get:58 http://mirror.bm.debian.org/debian/ jessie/main bsdutils amd64 1:2.25.2-6 [94.0 kB] Get:59 http://mirror.bm.debian.org/debian/ jessie/main coreutils amd64 8.23-4 [2727 kB] Get:60 http://mirror.bm.debian.org/debian/ jessie/main dash amd64 0.5.7-4+b1 [109 kB] Get:61 http://mirror.bm.debian.org/debian/ jessie/main diffutils amd64 1:3.3-1+b1 [267 kB] Get:62 http://mirror.bm.debian.org/debian/ jessie/main e2fslibs amd64 1.42.12-2+b1 [186 kB] Get:63 http://mirror.bm.debian.org/debian/ jessie/main e2fsprogs amd64 1.42.12-2+b1 [750 kB] Get:64 http://mirror.bm.debian.org/debian/ jessie/main findutils amd64 4.4.2-9+b1 [485 kB] Get:65 http://mirror.bm.debian.org/debian/ jessie/main grep amd64 2.20-4.1 [325 kB] Get:66 http://mirror.bm.debian.org/debian/ jessie/main gzip amd64 1.6-4 [111 kB] Get:67 http://mirror.bm.debian.org/debian/ jessie/main hostname amd64 3.15 [13.9 kB] Get:68 http://mirror.bm.debian.org/debian/ jessie/main libaudit-common all 1:2.4-1 [13.5 kB] Get:69 http://mirror.bm.debian.org/debian/ jessie/main libaudit1 amd64 1:2.4-1+b1 [44.7 kB] Get:70 http://mirror.bm.debian.org/debian/ jessie/main libattr1 amd64 1:2.4.47-2 [18.3 kB] Get:71 http://mirror.bm.debian.org/debian/ jessie/main libcap2 amd64 1:2.24-8 [15.3 kB] Get:72 http://mirror.bm.debian.org/debian/ jessie/main libpam0g amd64 1.1.8-3.1+deb8u2+b1 [126 kB] Get:73 http://mirror.bm.debian.org/debian/ jessie/main libsemanage-common all 2.3-1 [24.6 kB] Get:74 http://mirror.bm.debian.org/debian/ jessie/main libsemanage1 amd64 2.3-1+b1 [90.2 kB] Get:75 http://mirror.bm.debian.org/debian/ jessie/main libsepol1 amd64 2.3-2 [127 kB] Get:76 http://mirror.bm.debian.org/debian/ jessie/main libustr-1.0-1 amd64 1.0.4-3+b2 [79.6 kB] Get:77 http://mirror.bm.debian.org/debian/ jessie/main libpam-modules-bin amd64 1.1.8-3.1+deb8u2+b1 [104 kB] Get:78 http://mirror.bm.debian.org/debian/ jessie/main libpam-modules amd64 1.1.8-3.1+deb8u2+b1 [307 kB] Get:79 http://mirror.bm.debian.org/debian/ jessie/main passwd amd64 1:4.2-3+deb8u4 [971 kB] Get:80 http://mirror.bm.debian.org/debian/ jessie/main libuuid1 amd64 2.25.2-6 [64.7 kB] Get:81 http://mirror.bm.debian.org/debian/ jessie/main libblkid1 amd64 2.25.2-6 [156 kB] Get:82 http://mirror.bm.debian.org/debian/ jessie/main libmount1 amd64 2.25.2-6 [164 kB] Get:83 http://mirror.bm.debian.org/debian/ jessie/main libsmartcols1 amd64 2.25.2-6 [110 kB] Get:84 http://mirror.bm.debian.org/debian/ jessie/main startpar amd64 0.59-3 [21.8 kB] Get:85 http://mirror.bm.debian.org/debian/ 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Get:96 http://mirror.bm.debian.org/debian/ jessie/main procps amd64 2:3.3.9-9+deb8u1 [236 kB] Get:97 http://mirror.bm.debian.org/debian/ jessie/main libacl1 amd64 2.2.52-2 [27.9 kB] Get:98 http://mirror.bm.debian.org/debian/ jessie/main acl amd64 2.2.52-2 [58.4 kB] Get:99 http://mirror.bm.debian.org/debian/ jessie/main libcap2-bin amd64 1:2.24-8 [25.4 kB] Get:100 http://mirror.bm.debian.org/debian/ jessie/main init amd64 1.22 [4674 B] Get:101 http://mirror.bm.debian.org/debian/ jessie/main login amd64 1:4.2-3+deb8u4 [722 kB] Get:102 http://mirror.bm.debian.org/debian/ jessie/main ncurses-bin amd64 5.9+20140913-1+deb8u3 [347 kB] Get:103 http://mirror.bm.debian.org/debian/ jessie/main sed amd64 4.2.2-4+deb8u1 [243 kB] Get:104 http://mirror.bm.debian.org/debian/ jessie/main sysvinit amd64 2.88dsf-59 [99.9 kB] Get:105 http://mirror.bm.debian.org/debian/ jessie/main liblzma5 amd64 5.1.1alpha+20120614-2+b3 [194 kB] Get:106 http://mirror.bm.debian.org/debian/ jessie/main gpgv amd64 1.4.18-7+deb8u5 [209 kB] Get:107 http://mirror.bm.debian.org/debian/ jessie/main debian-archive-keyring all 2017.5~deb8u1 [56.7 kB] Get:108 http://mirror.bm.debian.org/debian/ jessie/main libusb-0.1-4 amd64 2:0.1.12-25 [21.9 kB] Get:109 http://mirror.bm.debian.org/debian/ jessie/main gnupg amd64 1.4.18-7+deb8u5 [1150 kB] Get:110 http://mirror.bm.debian.org/debian/ jessie/main libdebconfclient0 amd64 0.192 [46.2 kB] Get:111 http://mirror.bm.debian.org/debian/ jessie/main base-passwd amd64 3.5.37 [64.5 kB] Get:112 http://mirror.bm.debian.org/debian/ jessie/main ncurses-base all 5.9+20140913-1+deb8u3 [222 kB] Get:113 http://mirror.bm.debian.org/debian/ jessie/main libslang2 amd64 2.3.0-2 [491 kB] Get:114 http://mirror.bm.debian.org/debian/ jessie/main libcomerr2 amd64 1.42.12-2+b1 [60.7 kB] Get:115 http://mirror.bm.debian.org/debian/ jessie/main libss2 amd64 1.42.12-2+b1 [65.0 kB] Get:116 http://mirror.bm.debian.org/debian/ jessie/main libpam-runtime all 1.1.8-3.1+deb8u2 [212 kB] Get:117 http://mirror.bm.debian.org/debian/ jessie/main multiarch-support amd64 2.19-18+deb8u10 [181 kB] Get:118 http://mirror.bm.debian.org/debian/ jessie/main debconf-i18n all 1.5.56+deb8u1 [206 kB] Get:119 http://mirror.bm.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] Get:120 http://mirror.bm.debian.org/debian/ jessie/main xz-utils amd64 5.1.1alpha+20120614-2+b3 [221 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.6 MB in 1s (29.9 MB/s) (Reading database ... 8330 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.19-18+deb8u10_amd64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.19-18+deb8u10) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. (Reading database ... 8333 files and directories currently installed.) Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.19-18+deb8u10_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.19-18+deb8u10) ... Installing new version of config file /etc/bindresvport.blacklist ... Installing new version of config file /etc/gai.conf ... dpkg: gcc-4.7-base:amd64: dependency problems, but removing anyway as you requested: libstdc++6:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgfortran3:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgcc1:amd64 depends on gcc-4.7-base (= 4.7.2-5). libquadmath0:amd64 depends on gcc-4.7-base (= 4.7.2-5). (Reading database ... 8323 files and directories currently installed.) Removing gcc-4.7-base:amd64 ... Selecting previously unselected package gcc-4.9-base:amd64. (Reading database ... 8314 files and directories currently installed.) Unpacking gcc-4.9-base:amd64 (from .../gcc-4.9-base_4.9.2-10+deb8u2_amd64.deb) ... Setting up gcc-4.9-base:amd64 (4.9.2-10+deb8u2) ... (Reading database ... 8323 files and directories currently installed.) Preparing to replace libstdc++6:amd64 4.7.2-5 (using .../libstdc++6_4.9.2-10+deb8u2_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.9.2-10+deb8u2) ... 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Setting up base-files (8+deb8u11) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Updating /etc/profile to current default. Updating /etc/nsswitch.conf to current default. (Reading database ... 8847 files and directories currently installed.) Preparing to unpack .../sensible-utils_0.0.9+deb8u1_all.deb ... Unpacking sensible-utils (0.0.9+deb8u1) over (0.0.7) ... Setting up sensible-utils (0.0.9+deb8u1) ... (Reading database ... 8849 files and directories currently installed.) Preparing to unpack .../debianutils_4.4+b1_amd64.deb ... Unpacking debianutils (4.4+b1) over (4.3.2) ... Setting up debianutils (4.4+b1) ... (Reading database ... 8870 files and directories currently installed.) Preparing to unpack .../bash_4.3-11+deb8u1_amd64.deb ... Unpacking bash (4.3-11+deb8u1) over (4.2+dfsg-0.1+deb7u3) ... Setting up bash (4.3-11+deb8u1) ... 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Changing shell of daemon from /bin/sh to /usr/sbin/nologin Changing shell of bin from /bin/sh to /usr/sbin/nologin Changing shell of sys from /bin/sh to /usr/sbin/nologin Changing shell of games from /bin/sh to /usr/sbin/nologin Changing shell of man from /bin/sh to /usr/sbin/nologin Changing shell of lp from /bin/sh to /usr/sbin/nologin Changing shell of mail from /bin/sh to /usr/sbin/nologin Changing shell of news from /bin/sh to /usr/sbin/nologin Changing shell of uucp from /bin/sh to /usr/sbin/nologin Changing shell of proxy from /bin/sh to /usr/sbin/nologin Changing shell of www-data from /bin/sh to /usr/sbin/nologin Changing shell of backup from /bin/sh to /usr/sbin/nologin Changing shell of list from /bin/sh to /usr/sbin/nologin Changing shell of irc from /bin/sh to /usr/sbin/nologin Changing shell of gnats from /bin/sh to /usr/sbin/nologin Changing shell of nobody from /bin/sh to /usr/sbin/nologin 16 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 10025 files and directories currently installed.) 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Unpacking xz-utils (5.1.1alpha+20120614-2+b3) over (5.1.1alpha+20120614-2) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u2) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u2) ... Setting up libltdl7:amd64 (2.4.2-1.11+b1) ... Setting up libnuma1:amd64 (2.0.10-1) ... Setting up libhwloc5:amd64 (1.10.0-3) ... Setting up libcr0 (0.8.5-2.2) ... Setting up libibverbs1 (1.1.8-1.1) ... Setting up libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Setting up openmpi-common (1.6.5-9.1+deb8u1) ... Setting up openmpi-bin (1.6.5-9.1+deb8u1) ... Installing new version of config file /etc/openmpi/openmpi-default-hostfile ... Setting up mpi-default-bin (1.0.2+nmu2) ... Setting up nwchem-data (6.5+r26243-4) ... Setting up libpython2.7-minimal:amd64 (2.7.9-2+deb8u2) ... Setting up mime-support (3.58) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u4) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u10) ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u2) ... Setting up libpython2.7:amd64 (2.7.9-2+deb8u2) ... Setting up nwchem (6.5+r26243-4) ... Setting up libtext-charwidth-perl (0.04-7+b3) ... Setting up libtext-iconv-perl (1.7-5+b2) ... Setting up liblocale-gettext-perl (1.05-8+b1) ... Setting up debconf-i18n (1.5.56+deb8u1) ... Setting up ucf (3.0030) ... Setting up xz-utils (5.1.1alpha+20120614-2+b3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 0m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', '-yf', 'dist-upgrade'] 0m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m54.3s DUMP: 6dfb0a8b883c86978a79ded3f6eef9eb - 0m54.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'show', '--no-all-versions', 'nwchem'] 0m54.3s DUMP: Package: nwchem Version: 6.5+r26243-4 Installed-Size: 65331 Maintainer: Debichem Team Architecture: amd64 Depends: mpi-default-bin, nwchem-data (= 6.5+r26243-4), libc6 (>= 2.16), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.6), libopenmpi1.6, libpython2.7 (>= 2.7), libquadmath0 (>= 4.6), zlib1g (>= 1:1.2.0) Description-en: High-performance computational chemistry software NWChem is a computational chemistry program package. It provides methods which are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters. . NWChem can handle: . * Molecular electronic structure methods using gaussian basis functions for high-accuracy calculations of molecules * Pseudopotentials plane-wave electronic structure methods for calculating molecules, liquids, crystals, surfaces, semi-conductors or metals * Ab-initio and classical molecular dynamics simulations * Mixed quantum-classical simulations * Parallel scaling to thousands of processors . Features include: * Molecular electronic structure methods, analytic second derivatives: - Restricted/unrestricted Hartree-Fock (RHF, UHF) - Restricted Density Functional Theory (DFT) using many local, non-local (gradient-corrected) or hybrid (local, non-local, and HF) exchange-correlation potentials * Molecular electronic structure methods, analytic gradients: - Restricted open-shell Hartree-Fock (ROHF) - Unrestricted Density Functional Theory (DFT) - Second-order Moeller-Plesset perturbation theory (MP2), using RHF and UHF reference - Complete active space SCF (CASSCF) - Time-Dependent Density Functional Theory (TDDFT) * Molecular electronic structure methods, single-point energies: - MP2 with resolution of the identity integral approximation (RI-MP2) or spin-component scaled approach (SCS-MP2), using RHF and UHF reference - Coupled cluster singles and doubles, triples or pertubative triples (CCSD, CCSDT, CCSD(T)), with RHF and UHF reference - Configuration interaction (CISD, CISDT, and CISDTQ) - Second-order approximate coupled-cluster singles doubles (CC2) - State-specific multireference coupled cluster methods (MRCC) (Brillouin-Wigner (BW-MRCC) and Mukherjee (Mk-MRCC) approaches) * Further molecular electronic structure features: - Geometry optimization including transition state searches, constraints and minimum energy paths (via the Nudged Elastic Band (NEB) and Zero Temperature String methods) - Vibrational frequencies - Equation-of-motion (EOM)-CCSD, EOM-CCSDT, EOM-CCSD(T), CC2, Configuration-Interaction singles (CIS), time-dependent HF (TDHF) and TDDFT, for excited states with RHF, UHF, RDFT, or UDFT reference - Solvatisation using the Conductor-like screening model (COSMO) for RHF, ROHF and DFT, including analytical gradients - Hybrid calculations using the two- and three-layer ONIOM method - Relativistic effects via spin-free and spin-orbit one-electron Douglas-Kroll and zeroth-order regular approximations (ZORA) and one-electron spin-orbit effects for DFT via spin-orbit potentials * Pseudopotential plane-wave electronic structure: - Pseudopotential Plane-Wave (PSPW), Projector Augmented Wave (PAW) or band structure methods for calculating molecules, liquids, crystals, surfaces, semi-conductors or metals - Geometry/unit cell optimization including transition state searches - Vibrational frequencies - LDA, PBE96, and PBE0 exchange-correlation potentials (restricted and unrestricted) - SIC, pert-OEP, Hartree-Fock, and hybrid functionals (restricted and unrestricted) - Hamann, Troullier-Martins and Hartwigsen-Goedecker-Hutter norm-conserving pseudopotentials with semicore corrections - Wavefunction, density, electrostatic and Wannier plotting - Band structure and density of states generation * Car-Parrinello ab-initio molecular dynamics (CPMD): - Constant energy and constant temperature dynamics - Verlet algorithm for integration - Geometry constraints in cartesian coordinates * Classical molecular dynamics (MD): - Single configuration energy evaluation - Energy minimization - Molecular dynamics simulation - Free energy simulation (multistep thermodynamic perturbation (MSTP) or multiconfiguration thermodynamic integration (MCTI) methods with options of single and/or dual topologies, double wide sampling, and separation- shifted scaling) - Force fields providing effective pair potentials, first order polarization, self consistent polarization, smooth particle mesh Ewald (SPME), periodic boundary conditions and SHAKE constraints * Mixed quantum-classical: - Mixed quantum-mechanics and molecular-mechanics (QM/MM) minimizations and molecular dynamics simulations - Quantum molecular dynamics simulation by using any of the quantum mechanical methods capable of returning gradients. Description-md5: 0725f49597df8feadaf02ebba3676ac2 Homepage: http://www.nwchem-sw.org Tag: field::chemistry, role::program Section: science Priority: optional Filename: pool/main/n/nwchem/nwchem_6.5+r26243-4_amd64.deb Size: 10930508 MD5sum: 599d1b3009e65f69d26f22a4e4bd8bab SHA1: bd76e58ea0d1b4f0a7641c766156b72330f1ec0e SHA256: 7cb2b22591cd94c07e8a54040cabdc090f25a7dcfd31e21b6eca6a35fdf5a510 0m54.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'show', '--no-all-versions', 'nwchem'] 0m54.3s INFO: apt-cache knows about the following packages: nwchem 0m54.3s INFO: Running scripts pre_install 0m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_database-server'] 0m54.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_database-server'] 0m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_exceptions'] 0m54.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_exceptions'] 0m54.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_extras'] 0m54.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_extras'] 0m54.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_foreign_architecture'] 0m54.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_foreign_architecture'] 0m54.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m54.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m54.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'policy'] 0m54.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://mirror.bm.debian.org/debian/ jessie/main Translation-en 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m54.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'policy'] 0m54.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'policy', 'nwchem'] 0m54.6s DUMP: nwchem: Installed: 6.5+r26243-4 Candidate: 6.5+r26243-4 Version table: *** 6.5+r26243-4 0 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'policy', 'nwchem'] 0m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', '-y', 'install', 'nwchem'] 0m55.3s DUMP: Reading package lists... Building dependency tree... Reading state information... nwchem is already the newest version. The following package was automatically installed and is no longer required: libtorque2 Use 'apt-get autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m55.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', '-y', 'install', 'nwchem'] 0m55.3s INFO: Running scripts post_install 0m55.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_install_exceptions'] 0m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_install_exceptions'] 0m55.4s INFO: Running scripts post_distupgrade 0m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_exceptions'] 0m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_exceptions'] 0m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_experimental'] 0m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_experimental'] 0m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_hack_debsums'] 0m55.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_hack_debsums'] 0m55.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m55.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m55.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_zz_backports'] 0m55.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_distupgrade_zz_backports'] 0m55.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 0m57.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 0m57.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 0m59.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 0m59.2s INFO: Running scripts pre_install 0m59.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_database-server'] 0m59.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_database-server'] 0m59.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_exceptions'] 0m59.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_exceptions'] 0m59.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_extras'] 0m59.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_extras'] 0m59.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_foreign_architecture'] 0m59.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_foreign_architecture'] 0m59.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m59.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m59.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'policy'] 0m59.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ jessie/updates/main Translation-en 500 http://security.debian.org/ jessie/updates/main amd64 Packages release v=8,o=Debian,a=oldstable,n=jessie,l=Debian-Security,c=main origin security.debian.org 500 http://mirror.bm.debian.org/debian/ jessie/main Translation-en 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m59.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'policy'] 0m59.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'policy', 'nwchem'] 0m59.5s DUMP: nwchem: Installed: 6.5+r26243-4 Candidate: 6.5+r26243-4 Version table: *** 6.5+r26243-4 0 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 0m59.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-cache', 'policy', 'nwchem'] 0m59.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', '-y', 'install', 'nwchem=6.5+r26243-4'] 1m0.2s DUMP: Reading package lists... Building dependency tree... Reading state information... nwchem is already the newest version. The following package was automatically installed and is no longer required: libtorque2 Use 'apt-get autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', '-y', 'install', 'nwchem=6.5+r26243-4'] 1m0.2s INFO: Running scripts post_install 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_install_exceptions'] 1m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_install_exceptions'] 1m0.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 1m2.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m2.2s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 1.0.9.8.5 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u2 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.5 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcr0 libcr0 0.8.5-2.2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u4 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u2 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u5 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u2 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libhwloc5:amd64 libhwloc5 1.10.0-3 install ok installed libibverbs1 libibverbs1 1.1.8-1.1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed libltdl7:amd64 libltdl7 2.4.2-1.11+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libnuma1:amd64 libnuma1 2.0.10-1 deinstall ok config-files libopenmpi1.3 libopenmpi1.3 1.4.5-1 install ok installed libopenmpi1.6 libopenmpi1.6 1.6.5-9.1+deb8u1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libpython2.7:amd64 libpython2.7 2.7.9-2+deb8u2 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.9-2+deb8u2 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.9-2+deb8u2 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u2 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u4 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u10 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u2 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u9 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libtorque2 libtorque2 2.4.16+dfsg-1+deb7u4 install ok installed libudev1:amd64 libudev1 215-17+deb8u9 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.58 install ok installed mount mount 2.25.2-6 install ok installed mpi-default-bin mpi-default-bin 1.0.2+nmu2 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed nwchem nwchem 6.5+r26243-4 install ok installed nwchem-data nwchem-data 6.5+r26243-4 install ok installed openmpi-bin openmpi-bin 1.6.5-9.1+deb8u1 install ok installed openmpi-common openmpi-common 1.6.5-9.1+deb8u1 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl-base perl-base 5.20.2-3+deb8u12 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u9 install ok installed systemd-sysv systemd-sysv 215-17+deb8u9 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit sysvinit 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u2 install ok installed tzdata tzdata 2018i-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u9 install ok installed util-linux util-linux 2.25.2-6 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2+b3 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 1m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m3.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', '-ac', '--ignore-obsolete'] 1m5.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', '-ac', '--ignore-obsolete'] 1m5.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m5.7s DUMP: 0.15.1 1m5.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m5.7s INFO: Running adequate version 0.15.1 now. 1m5.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'nwchem'] 1m5.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'nwchem'] 1m5.9s INFO: Running scripts pre_remove 1m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_remove_exceptions'] 1m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/pre_remove_exceptions'] 1m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', 'remove', 'openmpi-common', 'libopenmpi1.6', 'nwchem-data', 'libgfortran3:amd64', 'libsqlite3-0:amd64', 'libhwloc5:amd64', 'libssl1.0.0:amd64', 'libopenmpi1.3', 'libquadmath0:amd64', 'libdb5.1:amd64', 'libibverbs1', 'openmpi-bin', 'libltdl7:amd64', 'libpython2.7:amd64', 'libtorque2', 'mime-support', 'libpython2.7-stdlib:amd64', 'libffi6:amd64', 'libexpat1:amd64', 'libcr0', 'libnuma1:amd64', 'libpython2.7-minimal:amd64', 'mpi-default-bin', 'nwchem'] 1m10.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libopenmpi1.3' is not installed, so not removed The following packages will be REMOVED: libcr0 libdb5.1 libexpat1 libffi6 libgfortran3 libhwloc5 libibverbs1 libltdl7 libnuma1 libopenmpi1.6 libpython2.7 libpython2.7-minimal libpython2.7-stdlib libquadmath0 libsqlite3-0 libssl1.0.0 libtorque2 mime-support mpi-default-bin nwchem nwchem-data openmpi-bin openmpi-common 0 upgraded, 0 newly installed, 23 to remove and 0 not upgraded. After this operation, 140 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10078 files and directories currently installed.) Removing nwchem (6.5+r26243-4) ... Removing mpi-default-bin (1.0.2+nmu2) ... Removing openmpi-bin (1.6.5-9.1+deb8u1) ... Removing libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Removing libcr0 (0.8.5-2.2) ... Removing libdb5.1:amd64 (5.1.29-5) ... Removing libpython2.7:amd64 (2.7.9-2+deb8u2) ... Removing libpython2.7-stdlib:amd64 (2.7.9-2+deb8u2) ... Removing libexpat1:amd64 (2.1.0-6+deb8u4) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Removing libhwloc5:amd64 (1.10.0-3) ... Removing libibverbs1 (1.1.8-1.1) ... Removing libltdl7:amd64 (2.4.2-1.11+b1) ... Removing libnuma1:amd64 (2.0.10-1) ... Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u2) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u4) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u10) ... Removing libtorque2 (2.4.16+dfsg-1+deb7u4) ... Removing mime-support (3.58) ... Removing nwchem-data (6.5+r26243-4) ... Removing openmpi-common (1.6.5-9.1+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 1m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', 'remove', 'openmpi-common', 'libopenmpi1.6', 'nwchem-data', 'libgfortran3:amd64', 'libsqlite3-0:amd64', 'libhwloc5:amd64', 'libssl1.0.0:amd64', 'libopenmpi1.3', 'libquadmath0:amd64', 'libdb5.1:amd64', 'libibverbs1', 'openmpi-bin', 'libltdl7:amd64', 'libpython2.7:amd64', 'libtorque2', 'mime-support', 'libpython2.7-stdlib:amd64', 'libffi6:amd64', 'libexpat1:amd64', 'libcr0', 'libnuma1:amd64', 'libpython2.7-minimal:amd64', 'mpi-default-bin', 'nwchem'] 1m10.7s INFO: Running scripts post_remove 1m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_remove_exceptions'] 1m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_remove_exceptions'] 1m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_remove_extras'] 1m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_remove_extras'] 1m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg', '--purge', 'openmpi-common', 'libopenmpi1.6', 'nwchem-data', 'libgfortran3:amd64', 'libsqlite3-0:amd64', 'libhwloc5:amd64', 'libssl1.0.0:amd64', 'libopenmpi1.3', 'libquadmath0:amd64', 'libdb5.1:amd64', 'libibverbs1', 'openmpi-bin', 'libltdl7:amd64', 'libpython2.7:amd64', 'libtorque2', 'mime-support', 'libpython2.7-stdlib:amd64', 'libffi6:amd64', 'libexpat1:amd64', 'libcr0', 'libnuma1:amd64', 'libpython2.7-minimal:amd64', 'mpi-default-bin'] 1m11.1s DUMP: dpkg: warning: ignoring request to remove openmpi-common which isn't installed (Reading database ... 7531 files and directories currently installed.) Removing libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Purging configuration files for libopenmpi1.6 (1.6.5-9.1+deb8u1) ... dpkg: warning: ignoring request to remove nwchem-data which isn't installed Removing libgfortran3:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u2) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u4) ... Purging configuration files for libsqlite3-0:amd64 (3.8.7.1-1+deb8u4) ... Removing libhwloc5:amd64 (1.10.0-3) ... Purging configuration files for libhwloc5:amd64 (1.10.0-3) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u10) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u10) ... Removing libopenmpi1.3 (1.4.5-1) ... Purging configuration files for libopenmpi1.3 (1.4.5-1) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u2) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u2) ... Removing libdb5.1:amd64 (5.1.29-5) ... Purging configuration files for libdb5.1:amd64 (5.1.29-5) ... Removing libibverbs1 (1.1.8-1.1) ... Purging configuration files for libibverbs1 (1.1.8-1.1) ... Removing openmpi-bin (1.6.5-9.1+deb8u1) ... Purging configuration files for openmpi-bin (1.6.5-9.1+deb8u1) ... Removing libltdl7:amd64 (2.4.2-1.11+b1) ... Purging configuration files for libltdl7:amd64 (2.4.2-1.11+b1) ... Removing libpython2.7:amd64 (2.7.9-2+deb8u2) ... Purging configuration files for libpython2.7:amd64 (2.7.9-2+deb8u2) ... Removing libtorque2 (2.4.16+dfsg-1+deb7u4) ... Purging configuration files for libtorque2 (2.4.16+dfsg-1+deb7u4) ... Removing mime-support (3.58) ... Purging configuration files for mime-support (3.58) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... Removing libexpat1:amd64 (2.1.0-6+deb8u4) ... Purging configuration files for libexpat1:amd64 (2.1.0-6+deb8u4) ... Removing libcr0 (0.8.5-2.2) ... Purging configuration files for libcr0 (0.8.5-2.2) ... Removing libnuma1:amd64 (2.0.10-1) ... Purging configuration files for libnuma1:amd64 (2.0.10-1) ... Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u2) ... Purging configuration files for libpython2.7-minimal:amd64 (2.7.9-2+deb8u2) ... dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed 1m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg', '--purge', 'openmpi-common', 'libopenmpi1.6', 'nwchem-data', 'libgfortran3:amd64', 'libsqlite3-0:amd64', 'libhwloc5:amd64', 'libssl1.0.0:amd64', 'libopenmpi1.3', 'libquadmath0:amd64', 'libdb5.1:amd64', 'libibverbs1', 'openmpi-bin', 'libltdl7:amd64', 'libpython2.7:amd64', 'libtorque2', 'mime-support', 'libpython2.7-stdlib:amd64', 'libffi6:amd64', 'libexpat1:amd64', 'libcr0', 'libnuma1:amd64', 'libpython2.7-minimal:amd64', 'mpi-default-bin'] 1m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg', '--purge', 'nwchem'] 1m11.2s DUMP: dpkg: warning: ignoring request to remove nwchem which isn't installed 1m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg', '--purge', 'nwchem'] 1m11.2s INFO: Running scripts post_purge 1m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_purge_exceptions'] 1m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_purge_exceptions'] 1m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg', '--purge', '--pending'] 1m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg', '--purge', '--pending'] 1m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg', '--remove', '--pending'] 1m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg', '--remove', '--pending'] 1m11.2s INFO: Running scripts post_test 1m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_test_exceptions'] 1m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'tmp/scripts/post_test_exceptions'] 1m11.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 1m12.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 1m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg-divert', '--list'] 1m12.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'dpkg-divert', '--list'] 1m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', 'clean'] 1m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8k3jQD', 'apt-get', 'clean'] 1m12.8s DEBUG: Recording chroot state 1m16.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/run/shm'] 1m17.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/run/shm'] 1m17.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/console'] 1m17.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/console'] 1m17.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/ptmx'] 1m17.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/ptmx'] 1m17.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/pts'] 1m17.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/dev/pts'] 1m17.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/proc'] 1m17.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8k3jQD/proc'] 1m17.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 1m17.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8k3jQD'] 1m17.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp8k3jQD 1m17.4s INFO: PASS: Upgrading between Debian distributions. 1m17.4s INFO: PASS: All tests. 1m17.4s INFO: piuparts run ends. ret=0 End: 2019-02-16 01:15:04 UTC