Start: 2023-03-22 19:33:09 GMT [wheezy] Package: blast2 Source: ncbi-tools6 (6.1.20120620-2) Version: 1:2.2.26.20120620-2 Installed-Size: 1285 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi6 (<< 6.1.20120620.1), libncbi6 (>= 6.1.20120620), libc6 (>= 2.7) Suggests: libvibrant6a, ncbi-rrna-data, ncbi-tools-bin, ncbi-tools-x11 Description: Basic Local Alignment Search Tool Multi-Arch: foreign Homepage: http://www.ncbi.nih.gov/BLAST/ Description-md5: bd82b4e0688ff1a5c7879b1f834a361b Tag: biology::nuceleic-acids, biology::peptidic, field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, science::calculation, scope::utility, use::searching, works-with::biological-sequence Section: science Priority: optional Filename: pool/main/n/ncbi-tools6/blast2_2.2.26.20120620-2_amd64.deb Size: 682290 MD5sum: 5f2212cc6dd2ca491f56311b79e16e12 SHA1: 6287d9745f61f0d04a161fe99788dfcecc56b81c SHA256: 24c15cb56e3280ae025179f35afd9efc3dbc3e94d03b278907fa4af65db092f5 [jessie] Package: blast2 Source: ncbi-tools6 (6.1.20120620-8) Version: 1:2.2.26.20120620-8 Installed-Size: 1281 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi6 (<< 6.1.20120620.1), libncbi6 (>= 6.1.20120620), libc6 (>= 2.14) Suggests: libvibrant6b, ncbi-rrna-data, ncbi-tools-bin, ncbi-tools-x11 Conflicts: ncbi-blast Description: Basic Local Alignment Search Tool Multi-Arch: foreign Homepage: http://www.ncbi.nih.gov/BLAST/ Description-md5: bd82b4e0688ff1a5c7879b1f834a361b Tag: biology::peptidic, field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, science::calculation, scope::utility, use::searching, works-with::biological-sequence Section: science Priority: optional Filename: pool/main/n/ncbi-tools6/blast2_2.2.26.20120620-8_amd64.deb Size: 558694 MD5sum: 8c02db448fd593ee90e2a42cd942a2f4 SHA1: a47eee2e656eeb03473368777de727dcca96f806 SHA256: dbf92ab410fe04c612ba345deeba6a9be7e6cca2eb901146fd05159d31df302e Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -S /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie-rcmd/reference-chroot-metadata.dat --apt blast2=1:2.2.26.20120620-8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -S /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie-rcmd/reference-chroot-metadata.dat --apt blast2=1:2.2.26.20120620-8 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpztx0mr_w 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpztx0mr_w 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/pts'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/pts'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/ptmx'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/run/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/run/shm'] 0m1.4s DEBUG: sources.list: deb http://archive.debian.org/debian wheezy main 0m1.4s DEBUG: Created policy-rc.d and chmodded it. 0m1.4s DEBUG: Created resolv.conf. 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpztx0mr_w/tmp/scripts/ 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpztx0mr_w/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DUMP: Creating /etc/apt/apt.conf.d/unauthenticated-wheezy ... # The Release file is not getting updated. Acquire::Check-Valid-Until "false"; 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w', 'apt-get', 'update'] 0m1.5s DUMP: E: Method http has died unexpectedly! E: Sub-process http received a segmentation fault. 0m1.5s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w', 'apt-get', 'update'] E: Method http has died unexpectedly! E: Sub-process http received a segmentation fault. 0m1.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/run/shm'] 0m1.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/run/shm'] 0m1.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/console'] 0m1.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/console'] 0m1.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/pts'] 0m1.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/dev/pts'] 0m1.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/proc'] 0m1.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w/proc'] 0m1.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w'] 0m1.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpztx0mr_w'] 0m1.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpztx0mr_w 0m1.9s ERROR: piuparts run ends. ret=1 End: 2023-03-22 19:33:11 GMT