Start: 2018-03-15 22:05:59 UTC [wheezy] Package: libbio-chado-schema-perl Version: 0.10010-1 Installed-Size: 939 Maintainer: Debian Perl Group Architecture: all Depends: perl, libbio-perl-perl, libcarp-clan-perl, libdbix-class-perl, libdbix-class-tree-nestedset-perl Description: DBIx::Class layer for the Chado database schema Homepage: http://search.cpan.org/dist/Bio-Chado-Schema/ Description-md5: e8df152f1b4935a6a1886485ca1aa0f3 Tag: devel::lang:perl, devel::library, implemented-in::perl, role::devel-lib Section: perl Priority: optional Filename: pool/main/libb/libbio-chado-schema-perl/libbio-chado-schema-perl_0.10010-1_all.deb Size: 111884 MD5sum: 5303491677985331db76a157f2f3bc15 SHA1: 1987cc7c2f11cc7a606dc83e5944b8bbd3c20d5f SHA256: 1255e9a67cc36cf21e51baacd8d1b23e616d82eb1934d98637c825ed1f9e1716 [jessie] Package: libbio-chado-schema-perl Version: 0.20000-1 Installed-Size: 957 Maintainer: Debian Perl Group Architecture: all Depends: perl, libbio-perl-perl, libcarp-clan-perl, libdbix-class-perl, libdbix-class-tree-nestedset-perl Description: DBIx::Class layer for the Chado database schema Homepage: http://search.cpan.org/dist/Bio-Chado-Schema/ Description-md5: e8df152f1b4935a6a1886485ca1aa0f3 Tag: devel::lang:perl, devel::library, implemented-in::perl Section: perl Priority: optional Filename: pool/main/libb/libbio-chado-schema-perl/libbio-chado-schema-perl_0.20000-1_all.deb Size: 118462 MD5sum: fa5510424394b388e447ccfd065294c0 SHA1: 6b05e10475586ba2bdd2b034574548c14f1fa64d SHA256: e76a4345c150a6ff6ffff794183d2c91986bf95c067757924ee5bb270172b0ed Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B reference-chroot-metadata.dat --apt libbio-chado-schema-perl=0.20000-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.84~201801121524~0.83-4-g6e16ed9a starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B reference-chroot-metadata.dat --apt libbio-chado-schema-perl=0.20000-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-6-amd64 #1 SMP Debian 4.9.82-1+deb9u3 (2018-03-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpxCvIgX 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpxCvIgX 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/run/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/run/shm'] 0m1.9s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpxCvIgX/tmp/scripts/ 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpxCvIgX/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', 'update'] 0m4.5s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Reading package lists... 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', 'update'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', '-yf', 'dist-upgrade'] 0m4.7s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', '-yf', 'dist-upgrade'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s INFO: Running scripts post_setup 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_dummy_users'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_dummy_users'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_forbid_home'] 0m5.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_forbid_home'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m6.2s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: ucf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 70.8 kB of archives. After this operation, 236 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.8 kB in 0s (0 B/s) Selecting previously unselected package ucf. (Reading database ... 6639 files and directories currently installed.) Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up ucf (3.0025+nmu3) ... 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_minimize'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_minimize'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_zz_backports'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_setup_zz_backports'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.2s DUMP: install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.2s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m6.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 0m7.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 0m7.1s INFO: Running scripts is_testable 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s INFO: Running scripts pre_test 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_test_root_password'] 0m7.2s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_test_root_password'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'show', 'libbio-chado-schema-perl'] 0m7.2s DUMP: Package: libbio-chado-schema-perl Version: 0.10010-1 Installed-Size: 939 Maintainer: Debian Perl Group Architecture: all Depends: perl, libbio-perl-perl, libcarp-clan-perl, libdbix-class-perl, libdbix-class-tree-nestedset-perl Description-en: DBIx::Class layer for the Chado database schema The module Bio::Chado::Schema is a standard object-relational mapping layer for use with the GMOD Chado database schema. Chado is an open-source modular database schema for biological data. Homepage: http://search.cpan.org/dist/Bio-Chado-Schema/ Description-md5: e8df152f1b4935a6a1886485ca1aa0f3 Tag: devel::lang:perl, devel::library, implemented-in::perl, role::devel-lib Section: perl Priority: optional Filename: pool/main/libb/libbio-chado-schema-perl/libbio-chado-schema-perl_0.10010-1_all.deb Size: 111884 MD5sum: 5303491677985331db76a157f2f3bc15 SHA1: 1987cc7c2f11cc7a606dc83e5944b8bbd3c20d5f SHA256: 1255e9a67cc36cf21e51baacd8d1b23e616d82eb1934d98637c825ed1f9e1716 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'show', 'libbio-chado-schema-perl'] 0m7.2s INFO: apt-cache knows about the following packages: libbio-chado-schema-perl 0m7.2s INFO: Running scripts pre_install 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_extras'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_extras'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'policy'] 0m7.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'policy'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'policy', 'libbio-chado-schema-perl'] 0m7.3s DUMP: libbio-chado-schema-perl: Installed: (none) Candidate: 0.10010-1 Version table: 0.10010-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'policy', 'libbio-chado-schema-perl'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', '-y', 'install', 'libbio-chado-schema-perl'] 0m50.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser amap-align apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalw dbus dialign emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-droid fonts-liberation ghostscript graphviz gsfonts hmmer ifupdown infernal iproute kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libappconfig-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarray-compare-perl libatm1 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcap2 libcarp-clan-perl libcdt4 libcgraph5 libclass-accessor-chained-perl libclass-accessor-grouped-perl libclass-accessor-perl libclass-base-perl libclass-c3-componentised-perl libclass-c3-perl libclass-c3-xs-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclass-makemethods-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconfig-any-perl libconfig-general-perl libconfig-tiny-perl libcontext-preserve-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-ssleay-perl libcups2 libcupsimage2 libdata-compare-perl libdata-dumper-concise-perl libdata-optlist-perl libdata-page-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbicx-testdatabase-perl libdbix-class-perl libdbix-class-tree-nestedset-perl libdbus-1-3 libdevel-argnames-perl libdevel-globaldestruction-perl libdevel-partialdump-perl libdevel-symdump-perl libencode-locale-perl liberror-perl libeval-closure-perl libexpat1 libfcgi-perl libffi5 libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgcrypt11 libgd-gd2-perl libgd2-xpm libgdbm3 libgetopt-long-descriptive-perl libgfortran3 libglib2.0-0 libglib2.0-data libgnutls26 libgpg-error0 libgpm2 libgraph-perl libgraph4 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgvc5 libgvpr1 libhash-merge-perl libheap-perl libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libijs-0.35 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg8 libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblist-moreutils-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-find-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoose-perl libmro-compat-perl libmysqlclient18 libnamespace-clean-perl libncbi6 libncursesw5 libnet-http-perl libnet-ssleay-perl libnumber-compare-perl libole-storage-lite-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpadwalker-perl libpango1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libpath-class-perl libpathplan4 libpcre3 libperl5.14 libpixman-1-0 libpng12-0 libpostscript-perl libpq5 libprocps0 libquadmath0 libreadonly-perl libreadonly-xs-perl librole-tiny-perl libruby1.9.1 libsasl2-2 libsasl2-modules libscope-guard-perl libset-scalar-perl libsm6 libsoap-lite-perl libsocket-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsql-abstract-perl libsql-translator-perl libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libswitch-perl libsystemd-login0 libtask-weaken-perl libtasn1-3 libtemplate-perl libtext-glob-perl libtext-recordparser-perl libtext-tabulardisplay-perl libthai-data libthai0 libtie-ixhash-perl libtiff4 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libunicode-map-perl liburi-perl libvariable-magic-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-syck-perl lynx lynx-cur mafft maq mime-support muscle mysql-common ncbi-data netbase openssl perl perl-doc perl-modules perl-tk phyml poppler-data primer3 probcons procps psmisc ruby ruby1.9.1 samtools sgml-base shared-mime-info sim4 ssl-cert t-coffee tigr-glimmer tm-align ttf-dejavu-core ttf-liberation wise x11-common xml-core Suggested packages: www-browser apache2-doc apache2-suexec apache2-suexec-custom filo groff-base gmap paml molphy phylip ensembl libvibrant6a ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 bowtie-examples clustalx seaview dbus-x11 emboss-doc emboss-test embassy ghostscript-cups ghostscript-x hpijs graphviz-doc hmmer-doc isc-dhcp-client dhcp-client ppp rdnssd net-tools iproute-doc libmath-random-perl libxml-sax-expatxs-perl cups-common libscalar-properties-perl libjson-any-perl libmath-base36-perl libmoosex-types-json-perl libmoosex-types-path-class-perl libmoosex-types-perl libnamespace-autoclean-perl libtext-csv-perl rng-tools libgd-tools gpm krb5-doc krb5-user libdata-dump-perl libjasper-runtime libjson-pp-perl liblcms2-utils libmime-base64-perl uuid ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp libscalar-number-perl libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal libmime-lite-perl libnet-jabber-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libtemplate-perl-doc libtemplate-plugin-gd-perl libtemplate-plugin-xml-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl libterm-readline-gnu-perl libterm-readline-perl-perl make man-browser groff libpod-plainer-perl poppler-utils fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-unfonts-core ncbi-epcr probcons-extra ri ruby-dev ruby1.9.1-examples ri1.9.1 ruby1.9.1-dev ruby-switch python sgml-base-doc openssl-blacklist boxshade t-coffee-doc t-coffee-examples dialign-tx poa proda pymol rasmol wise-doc debhelper Recommended packages: libstorable-perl The following NEW packages will be installed: adduser amap-align apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalw dbus dialign emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-droid fonts-liberation ghostscript graphviz gsfonts hmmer ifupdown infernal iproute kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libappconfig-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarray-compare-perl libatm1 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libbio-asn1-entrezgene-perl libbio-chado-schema-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcap2 libcarp-clan-perl libcdt4 libcgraph5 libclass-accessor-chained-perl libclass-accessor-grouped-perl libclass-accessor-perl libclass-base-perl libclass-c3-componentised-perl libclass-c3-perl libclass-c3-xs-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclass-makemethods-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconfig-any-perl libconfig-general-perl libconfig-tiny-perl libcontext-preserve-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-ssleay-perl libcups2 libcupsimage2 libdata-compare-perl libdata-dumper-concise-perl libdata-optlist-perl libdata-page-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbicx-testdatabase-perl libdbix-class-perl libdbix-class-tree-nestedset-perl libdbus-1-3 libdevel-argnames-perl libdevel-globaldestruction-perl libdevel-partialdump-perl libdevel-symdump-perl libencode-locale-perl liberror-perl libeval-closure-perl libexpat1 libfcgi-perl libffi5 libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgcrypt11 libgd-gd2-perl libgd2-xpm libgdbm3 libgetopt-long-descriptive-perl libgfortran3 libglib2.0-0 libglib2.0-data libgnutls26 libgpg-error0 libgpm2 libgraph-perl libgraph4 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgvc5 libgvpr1 libhash-merge-perl libheap-perl libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libijs-0.35 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg8 libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblist-moreutils-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-find-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoose-perl libmro-compat-perl libmysqlclient18 libnamespace-clean-perl libncbi6 libncursesw5 libnet-http-perl libnet-ssleay-perl libnumber-compare-perl libole-storage-lite-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpadwalker-perl libpango1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libpath-class-perl libpathplan4 libpcre3 libperl5.14 libpixman-1-0 libpng12-0 libpostscript-perl libpq5 libprocps0 libquadmath0 libreadonly-perl libreadonly-xs-perl librole-tiny-perl libruby1.9.1 libsasl2-2 libsasl2-modules libscope-guard-perl libset-scalar-perl libsm6 libsoap-lite-perl libsocket-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsql-abstract-perl libsql-translator-perl libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libswitch-perl libsystemd-login0 libtask-weaken-perl libtasn1-3 libtemplate-perl libtext-glob-perl libtext-recordparser-perl libtext-tabulardisplay-perl libthai-data libthai0 libtie-ixhash-perl libtiff4 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libunicode-map-perl liburi-perl libvariable-magic-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-syck-perl lynx lynx-cur mafft maq mime-support muscle mysql-common ncbi-data netbase openssl perl perl-doc perl-modules perl-tk phyml poppler-data primer3 probcons procps psmisc ruby ruby1.9.1 samtools sgml-base shared-mime-info sim4 ssl-cert t-coffee tigr-glimmer tm-align ttf-dejavu-core ttf-liberation wise x11-common xml-core 0 upgraded, 350 newly installed, 0 to remove and 0 not upgraded. Need to get 169 MB of archives. After this operation, 712 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main iproute amd64 20120521-3+b3 [459 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main ifupdown amd64 0.7.8 [64.9 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libgdbm3 amd64 1.8.3-11 [46.9 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libncursesw5 amd64 5.9-10 [141 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main libprocps0 amd64 1:3.3.3-3 [58.1 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main libssl1.0.0 amd64 1.0.1e-2+deb7u20 [1263 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main libcap2 amd64 1:2.22-1.2 [13.6 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libgcrypt11 amd64 1.5.0-5+deb7u4 [301 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libtasn1-3 amd64 2.13-2+deb7u2 [67.8 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libgnutls26 amd64 2.12.20-8+deb7u5 [620 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libgpm2 amd64 1.20.4-6 [35.8 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main libkeyutils1 amd64 1.5.5-3+deb7u1 [8664 B] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main libkrb5support0 amd64 1.10.1+dfsg-5+deb7u7 [50.5 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main libk5crypto3 amd64 1.10.1+dfsg-5+deb7u7 [113 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main libkrb5-3 amd64 1.10.1+dfsg-5+deb7u7 [394 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main libgssapi-krb5-2 amd64 1.10.1+dfsg-5+deb7u7 [150 kB] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main libidn11 amd64 1.25-2 [178 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main libsasl2-2 amd64 2.1.25.dfsg1-6+deb7u1 [120 kB] Get:21 http://mirror-ubc.debian.org/debian/ wheezy/main libldap-2.4-2 amd64 2.4.31-2+deb7u2 [243 kB] Get:22 http://mirror-ubc.debian.org/debian/ wheezy/main libmagic1 amd64 5.11-2+deb7u8 [205 kB] Get:23 http://mirror-ubc.debian.org/debian/ wheezy/main libpcre3 amd64 1:8.30-5 [242 kB] Get:24 http://mirror-ubc.debian.org/debian/ wheezy/main libsqlite3-0 amd64 3.7.13-1+deb7u2 [454 kB] Get:25 http://mirror-ubc.debian.org/debian/ wheezy/main libxml2 amd64 2.8.0+dfsg1-7+wheezy5 [906 kB] Get:26 http://mirror-ubc.debian.org/debian/ wheezy/main bedtools amd64 2.16.1-1 [434 kB] Get:27 http://mirror-ubc.debian.org/debian/ wheezy/main libatm1 amd64 1:2.5.1-1.5 [73.3 kB] Get:28 http://mirror-ubc.debian.org/debian/ wheezy/main libavahi-common-data amd64 0.6.31-2 [135 kB] Get:29 http://mirror-ubc.debian.org/debian/ wheezy/main libavahi-common3 amd64 0.6.31-2 [54.6 kB] Get:30 http://mirror-ubc.debian.org/debian/ wheezy/main libdbus-1-3 amd64 1.6.8-1+deb7u6 [174 kB] Get:31 http://mirror-ubc.debian.org/debian/ wheezy/main libavahi-client3 amd64 0.6.31-2 [59.5 kB] Get:32 http://mirror-ubc.debian.org/debian/ wheezy/main libbsd0 amd64 0.4.2-1 [59.3 kB] Get:33 http://mirror-ubc.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:34 http://mirror-ubc.debian.org/debian/ wheezy/main libfreetype6 amd64 2.4.9-1.1+deb7u3 [452 kB] Get:35 http://mirror-ubc.debian.org/debian/ wheezy/main ttf-dejavu-core all 2.33-3 [1021 kB] Get:36 http://mirror-ubc.debian.org/debian/ wheezy/main fontconfig-config all 2.9.0-7.1 [233 kB] Get:37 http://mirror-ubc.debian.org/debian/ wheezy/main libfontconfig1 amd64 2.9.0-7.1 [300 kB] Get:38 http://mirror-ubc.debian.org/debian/ wheezy/main libpixman-1-0 amd64 0.26.0-4+deb7u2 [427 kB] Get:39 http://mirror-ubc.debian.org/debian/ wheezy/main libpng12-0 amd64 1.2.49-1+deb7u2 [191 kB] Get:40 http://mirror-ubc.debian.org/debian/ wheezy/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:41 http://mirror-ubc.debian.org/debian/ wheezy/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:42 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb1 amd64 1.8.1-2+deb7u1 [50.2 kB] Get:43 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-data all 2:1.5.0-1+deb7u2 [194 kB] Get:44 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-6 amd64 2:1.5.0-1+deb7u2 [901 kB] Get:45 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb-render0 amd64 1.8.1-2+deb7u1 [18.6 kB] Get:46 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb-shm0 amd64 1.8.1-2+deb7u1 [10.4 kB] Get:47 http://mirror-ubc.debian.org/debian/ wheezy/main libxrender1 amd64 1:0.9.7-1+deb7u2 [32.9 kB] Get:48 http://mirror-ubc.debian.org/debian/ wheezy/main libcairo2 amd64 1.12.2-3 [912 kB] Get:49 http://mirror-ubc.debian.org/debian/ wheezy/main libcups2 amd64 1.5.3-5+deb7u6 [256 kB] Get:50 http://mirror-ubc.debian.org/debian/ wheezy/main libjpeg8 amd64 8d-1+deb7u1 [138 kB] Get:51 http://mirror-ubc.debian.org/debian/ wheezy/main libjbig0 amd64 2.0-2+deb7u1 [32.6 kB] Get:52 http://mirror-ubc.debian.org/debian/ wheezy/main libtiff4 amd64 3.9.6-11 [202 kB] Get:53 http://mirror-ubc.debian.org/debian/ wheezy/main libcupsimage2 amd64 1.5.3-5+deb7u6 [138 kB] Get:54 http://mirror-ubc.debian.org/debian/ wheezy/main libdatrie1 amd64 0.2.5-3 [28.6 kB] Get:55 http://mirror-ubc.debian.org/debian/ wheezy/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:56 http://mirror-ubc.debian.org/debian/ wheezy/main libxpm4 amd64 1:3.5.10-1 [49.4 kB] Get:57 http://mirror-ubc.debian.org/debian/ wheezy/main libgd2-xpm amd64 2.0.36~rc1~dfsg-6.1+deb7u2 [234 kB] Get:58 http://mirror-ubc.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:59 http://mirror-ubc.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:60 http://mirror-ubc.debian.org/debian/ wheezy/main libglib2.0-0 amd64 2.33.12+really2.32.4-5 [1838 kB] Get:61 http://mirror-ubc.debian.org/debian/ wheezy/main x11-common all 1:7.7+3~deb7u1 [284 kB] Get:62 http://mirror-ubc.debian.org/debian/ wheezy/main libice6 amd64 2:1.0.8-2 [63.1 kB] Get:63 http://mirror-ubc.debian.org/debian/ wheezy/main libjasper1 amd64 1.900.1-13+deb7u4 [160 kB] Get:64 http://mirror-ubc.debian.org/debian/ wheezy/main liblcms2-2 amd64 2.2+git20110628-2.2+deb7u1 [144 kB] Get:65 http://mirror-ubc.debian.org/debian/ wheezy/main libltdl7 amd64 2.4.2-1.1 [352 kB] Get:66 http://mirror-ubc.debian.org/debian/ wheezy/main mysql-common all 5.5.47-0+deb7u1 [81.9 kB] Get:67 http://mirror-ubc.debian.org/debian/ wheezy/main libmysqlclient18 amd64 5.5.47-0+deb7u1 [686 kB] Get:68 http://mirror-ubc.debian.org/debian/ wheezy/main ncbi-data all 6.1.20120620-2 [5893 kB] Get:69 http://mirror-ubc.debian.org/debian/ wheezy/main libncbi6 amd64 6.1.20120620-2 [4887 kB] Get:70 http://mirror-ubc.debian.org/debian/ wheezy/main libthai-data all 0.1.18-2 [154 kB] Get:71 http://mirror-ubc.debian.org/debian/ wheezy/main libthai0 amd64 0.1.18-2 [42.3 kB] Get:72 http://mirror-ubc.debian.org/debian/ wheezy/main libxft2 amd64 2.3.1-1 [61.0 kB] Get:73 http://mirror-ubc.debian.org/debian/ wheezy/main fontconfig amd64 2.9.0-7.1 [348 kB] Get:74 http://mirror-ubc.debian.org/debian/ wheezy/main libpango1.0-0 amd64 1.30.0-1 [461 kB] Get:75 http://mirror-ubc.debian.org/debian/ wheezy/main libpaper1 amd64 1.1.24+nmu2 [22.0 kB] Get:76 http://mirror-ubc.debian.org/debian/ wheezy/main libsm6 amd64 2:1.2.1-2 [34.2 kB] Get:77 http://mirror-ubc.debian.org/debian/ wheezy/main libxext6 amd64 2:1.3.1-2+deb7u1 [54.8 kB] Get:78 http://mirror-ubc.debian.org/debian/ wheezy/main libxt6 amd64 1:1.1.3-1+deb7u1 [212 kB] Get:79 http://mirror-ubc.debian.org/debian/ wheezy/main libxmu6 amd64 2:1.1.1-1 [66.6 kB] Get:80 http://mirror-ubc.debian.org/debian/ wheezy/main libxaw7 amd64 2:1.0.10-2 [226 kB] Get:81 http://mirror-ubc.debian.org/debian/ wheezy/main libxslt1.1 amd64 1.1.26-14.1 [254 kB] Get:82 http://mirror-ubc.debian.org/debian/ wheezy/main libyaml-0-2 amd64 0.1.4-2+deb7u5 [58.3 kB] Get:83 http://mirror-ubc.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:84 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:85 http://mirror-ubc.debian.org/debian/ wheezy/main perl-modules all 5.14.2-21+deb7u3 [3444 kB] Get:86 http://mirror-ubc.debian.org/debian/ wheezy/main perl amd64 5.14.2-21+deb7u3 [4429 kB] Get:87 http://mirror-ubc.debian.org/debian/ wheezy/main libyaml-syck-perl amd64 1.20-1 [75.5 kB] Get:88 http://mirror-ubc.debian.org/debian/ wheezy/main mafft amd64 6.864-1 [799 kB] Get:89 http://mirror-ubc.debian.org/debian/ wheezy/main poppler-data all 0.4.5-10 [1479 kB] Get:90 http://mirror-ubc.debian.org/debian/ wheezy/main sgml-base all 1.26+nmu4 [14.6 kB] Get:91 http://mirror-ubc.debian.org/debian/ wheezy/main wise amd64 2.4.1-10 [1075 kB] Get:92 http://mirror-ubc.debian.org/debian/ wheezy/main libsystemd-login0 amd64 44-11+deb7u4 [29.5 kB] Get:93 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:94 http://mirror-ubc.debian.org/debian/ wheezy/main netbase all 5.0 [20.1 kB] Get:95 http://mirror-ubc.debian.org/debian/ wheezy/main procps amd64 1:3.3.3-3 [252 kB] Get:96 http://mirror-ubc.debian.org/debian/ wheezy/main file amd64 5.11-2+deb7u8 [53.4 kB] Get:97 http://mirror-ubc.debian.org/debian/ wheezy/main krb5-locales all 1.10.1+dfsg-5+deb7u7 [1504 kB] Get:98 http://mirror-ubc.debian.org/debian/ wheezy/main mime-support all 3.52-1+deb7u1 [35.5 kB] Get:99 http://mirror-ubc.debian.org/debian/ wheezy/main amap-align amd64 2.2-3 [144 kB] Get:100 http://mirror-ubc.debian.org/debian/ wheezy/main libapr1 amd64 1.4.6-3+deb7u1 [106 kB] Get:101 http://mirror-ubc.debian.org/debian/ wheezy/main libaprutil1 amd64 1.4.1-3 [89.8 kB] Get:102 http://mirror-ubc.debian.org/debian/ wheezy/main libaprutil1-dbd-sqlite3 amd64 1.4.1-3 [19.0 kB] Get:103 http://mirror-ubc.debian.org/debian/ wheezy/main libaprutil1-ldap amd64 1.4.1-3 [16.6 kB] Get:104 http://mirror-ubc.debian.org/debian/ wheezy/main apache2.2-bin amd64 2.2.22-13+deb7u6 [793 kB] Get:105 http://mirror-ubc.debian.org/debian/ wheezy/main apache2-utils amd64 2.2.22-13+deb7u6 [164 kB] Get:106 http://mirror-ubc.debian.org/debian/ wheezy/main apache2.2-common amd64 2.2.22-13+deb7u6 [294 kB] Get:107 http://mirror-ubc.debian.org/debian/ wheezy/main apache2-mpm-worker amd64 2.2.22-13+deb7u6 [2236 B] Get:108 http://mirror-ubc.debian.org/debian/ wheezy/main apache2 amd64 2.2.22-13+deb7u6 [1438 B] Get:109 http://mirror-ubc.debian.org/debian/ wheezy/main libio-string-perl all 1.08-2 [12.0 kB] Get:110 http://mirror-ubc.debian.org/debian/ wheezy/main libdata-stag-perl all 0.11-2 [509 kB] Get:111 http://mirror-ubc.debian.org/debian/ wheezy/main libbio-perl-perl all 1.6.901-3 [6143 kB] Get:112 http://mirror-ubc.debian.org/debian/ wheezy/main bioperl all 1.6.901-3 [467 kB] Get:113 http://mirror-ubc.debian.org/debian/ wheezy/main libbio-perl-run-perl all 1.6.9-1 [883 kB] Get:114 http://mirror-ubc.debian.org/debian/ wheezy/main bioperl-run all 1.6.9-1 [46.3 kB] Get:115 http://mirror-ubc.debian.org/debian/ wheezy/main blast2 amd64 1:2.2.26.20120620-2 [682 kB] Get:116 http://mirror-ubc.debian.org/debian/ wheezy/main bwa amd64 0.6.2-1 [156 kB] Get:117 http://mirror-ubc.debian.org/debian/ wheezy/main openssl amd64 1.0.1e-2+deb7u20 [702 kB] Get:118 http://mirror-ubc.debian.org/debian/ wheezy/main ca-certificates all 20130119+deb7u1 [210 kB] Get:119 http://mirror-ubc.debian.org/debian/ wheezy/main clustalw amd64 2.1+lgpl-2 [346 kB] Get:120 http://mirror-ubc.debian.org/debian/ wheezy/main dbus amd64 1.6.8-1+deb7u6 [404 kB] Get:121 http://mirror-ubc.debian.org/debian/ wheezy/main dialign amd64 2.2.1-5 [205 kB] Get:122 http://mirror-ubc.debian.org/debian/ wheezy/main libhpdf-2.2.1 amd64 2.2.1-1 [504 kB] Get:123 http://mirror-ubc.debian.org/debian/ wheezy/main libpq5 amd64 9.1.21-0+deb7u1 [140 kB] Get:124 http://mirror-ubc.debian.org/debian/ wheezy/main emboss-lib amd64 6.4.0-2 [2823 kB] Get:125 http://mirror-ubc.debian.org/debian/ wheezy/main emboss-data all 6.4.0-2 [39.0 MB] Get:126 http://mirror-ubc.debian.org/debian/ wheezy/main emboss amd64 6.4.0-2 [1009 kB] Get:127 http://mirror-ubc.debian.org/debian/ wheezy/main exonerate amd64 2.2.0-6 [3053 kB] Get:128 http://mirror-ubc.debian.org/debian/ wheezy/main fonts-droid all 20111207+git-1 [4312 kB] Get:129 http://mirror-ubc.debian.org/debian/ wheezy/main fonts-liberation all 1.07.2-6 [1323 kB] Get:130 http://mirror-ubc.debian.org/debian/ wheezy/main libijs-0.35 amd64 0.35-8 [20.4 kB] Get:131 http://mirror-ubc.debian.org/debian/ wheezy/main libjbig2dec0 amd64 0.11+20120125-1 [51.8 kB] Get:132 http://mirror-ubc.debian.org/debian/ wheezy/main libgs9-common all 9.05~dfsg-6.3+deb7u2 [1977 kB] Get:133 http://mirror-ubc.debian.org/debian/ wheezy/main libgs9 amd64 9.05~dfsg-6.3+deb7u2 [1844 kB] Get:134 http://mirror-ubc.debian.org/debian/ wheezy/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2 [3364 kB] Get:135 http://mirror-ubc.debian.org/debian/ wheezy/main ghostscript amd64 9.05~dfsg-6.3+deb7u2 [80.3 kB] Get:136 http://mirror-ubc.debian.org/debian/ wheezy/main libcdt4 amd64 2.26.3-14+deb7u2 [60.0 kB] Get:137 http://mirror-ubc.debian.org/debian/ wheezy/main libcgraph5 amd64 2.26.3-14+deb7u2 [88.1 kB] Get:138 http://mirror-ubc.debian.org/debian/ wheezy/main libgraph4 amd64 2.26.3-14+deb7u2 [74.0 kB] Get:139 http://mirror-ubc.debian.org/debian/ wheezy/main libpathplan4 amd64 2.26.3-14+deb7u2 [65.3 kB] Get:140 http://mirror-ubc.debian.org/debian/ wheezy/main libxdot4 amd64 2.26.3-14+deb7u2 [54.4 kB] Get:141 http://mirror-ubc.debian.org/debian/ wheezy/main libgvc5 amd64 2.26.3-14+deb7u2 [544 kB] Get:142 http://mirror-ubc.debian.org/debian/ wheezy/main libgvpr1 amd64 2.26.3-14+deb7u2 [244 kB] Get:143 http://mirror-ubc.debian.org/debian/ wheezy/main graphviz amd64 2.26.3-14+deb7u2 [378 kB] Get:144 http://mirror-ubc.debian.org/debian/ wheezy/main hmmer amd64 3.0-4 [2217 kB] Get:145 http://mirror-ubc.debian.org/debian/ wheezy/main infernal amd64 1.0.2-2 [4859 kB] Get:146 http://mirror-ubc.debian.org/debian/ wheezy/main kalign amd64 1:2.03+20110620-2 [94.8 kB] Get:147 http://mirror-ubc.debian.org/debian/ wheezy/main liberror-perl all 0.17-1 [23.6 kB] Get:148 http://mirror-ubc.debian.org/debian/ wheezy/main libipc-sharelite-perl amd64 0.17-2 [27.3 kB] Get:149 http://mirror-ubc.debian.org/debian/ wheezy/main libcache-cache-perl all 1.06-2 [79.3 kB] Get:150 http://mirror-ubc.debian.org/debian/ wheezy/main libace-perl amd64 1.92-2+b2 [351 kB] Get:151 http://mirror-ubc.debian.org/debian/ wheezy/main libalgorithm-c3-perl all 0.08-1 [11.8 kB] Get:152 http://mirror-ubc.debian.org/debian/ wheezy/main libalgorithm-diff-perl all 1.19.02-2 [51.5 kB] Get:153 http://mirror-ubc.debian.org/debian/ wheezy/main libalgorithm-diff-xs-perl amd64 0.04-2+b1 [12.9 kB] Get:154 http://mirror-ubc.debian.org/debian/ wheezy/main libalgorithm-munkres-perl all 0.08-2 [12.5 kB] Get:155 http://mirror-ubc.debian.org/debian/ wheezy/main libperl5.14 amd64 5.14.2-21+deb7u3 [1188 B] Get:156 http://mirror-ubc.debian.org/debian/ wheezy/main libdevel-symdump-perl all 2.08-4 [16.6 kB] Get:157 http://mirror-ubc.debian.org/debian/ wheezy/main liburi-perl all 1.60-1 [100 kB] Get:158 http://mirror-ubc.debian.org/debian/ wheezy/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:159 http://mirror-ubc.debian.org/debian/ wheezy/main libtimedate-perl all 1.2000-1 [41.2 kB] Get:160 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:161 http://mirror-ubc.debian.org/debian/ wheezy/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:162 http://mirror-ubc.debian.org/debian/ wheezy/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:163 http://mirror-ubc.debian.org/debian/ wheezy/main libhtml-parser-perl amd64 3.69-2 [114 kB] Get:164 http://mirror-ubc.debian.org/debian/ wheezy/main libhtml-tree-perl all 5.02-1 [225 kB] Get:165 http://mirror-ubc.debian.org/debian/ wheezy/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:166 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-message-perl all 6.03-1 [78.5 kB] Get:167 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-cookies-perl all 6.00-2 [23.5 kB] Get:168 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:169 http://mirror-ubc.debian.org/debian/ wheezy/main libnet-ssleay-perl amd64 1.48-1+b1 [335 kB] Get:170 http://mirror-ubc.debian.org/debian/ wheezy/main libio-socket-ssl-perl all 1.76-2 [68.0 kB] Get:171 http://mirror-ubc.debian.org/debian/ wheezy/main libnet-http-perl all 6.03-2 [24.3 kB] Get:172 http://mirror-ubc.debian.org/debian/ wheezy/main liblwp-protocol-https-perl all 6.03-1 [7580 B] Get:173 http://mirror-ubc.debian.org/debian/ wheezy/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:174 http://mirror-ubc.debian.org/debian/ wheezy/main libwww-perl all 6.04-1 [203 kB] Get:175 http://mirror-ubc.debian.org/debian/ wheezy/main libapache2-mod-perl2 amd64 2.0.7-3 [1081 kB] Get:176 http://mirror-ubc.debian.org/debian/ wheezy/main libdbi-perl amd64 1.622-1+deb7u1 [892 kB] Get:177 http://mirror-ubc.debian.org/debian/ wheezy/main libapache-dbi-perl all 1.11-1 [54.3 kB] Get:178 http://mirror-ubc.debian.org/debian/ wheezy/main libapache2-reload-perl all 0.12-1 [17.9 kB] Get:179 http://mirror-ubc.debian.org/debian/ wheezy/main libappconfig-perl all 1.66-1 [77.8 kB] Get:180 http://mirror-ubc.debian.org/debian/ wheezy/main libparams-util-perl amd64 1.07-1 [25.7 kB] Get:181 http://mirror-ubc.debian.org/debian/ wheezy/main libsub-install-perl all 0.926-1 [11.2 kB] Get:182 http://mirror-ubc.debian.org/debian/ wheezy/main libdata-optlist-perl all 0.107-1 [10.7 kB] Get:183 http://mirror-ubc.debian.org/debian/ wheezy/main libparams-classify-perl amd64 0.013-4 [26.0 kB] Get:184 http://mirror-ubc.debian.org/debian/ wheezy/main libmodule-runtime-perl all 0.013-1 [17.8 kB] Get:185 http://mirror-ubc.debian.org/debian/ wheezy/main libtry-tiny-perl all 0.11-1 [18.0 kB] Get:186 http://mirror-ubc.debian.org/debian/ wheezy/main libmodule-implementation-perl all 0.06-1 [12.8 kB] Get:187 http://mirror-ubc.debian.org/debian/ wheezy/main liblist-moreutils-perl amd64 0.33-1+b1 [52.5 kB] Get:188 http://mirror-ubc.debian.org/debian/ wheezy/main libpackage-deprecationmanager-perl all 0.13-1 [13.9 kB] Get:189 http://mirror-ubc.debian.org/debian/ wheezy/main libpackage-stash-perl all 0.33-1 [19.5 kB] Get:190 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-load-perl all 0.17-1 [13.0 kB] Get:191 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-load-xs-perl amd64 0.04-1 [13.3 kB] Get:192 http://mirror-ubc.debian.org/debian/ wheezy/main libsub-exporter-perl all 0.984-1 [52.4 kB] Get:193 http://mirror-ubc.debian.org/debian/ wheezy/main libdevel-globaldestruction-perl all 0.06-1 [8432 B] Get:194 http://mirror-ubc.debian.org/debian/ wheezy/main libeval-closure-perl all 0.08-1 [11.1 kB] Get:195 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-c3-perl all 0.24-1 [23.8 kB] Get:196 http://mirror-ubc.debian.org/debian/ wheezy/main libmro-compat-perl all 0.11-1 [12.7 kB] Get:197 http://mirror-ubc.debian.org/debian/ wheezy/main libpackage-stash-xs-perl amd64 0.24-1+b1 [20.2 kB] Get:198 http://mirror-ubc.debian.org/debian/ wheezy/main libsub-name-perl amd64 0.05-1+b2 [10.2 kB] Get:199 http://mirror-ubc.debian.org/debian/ wheezy/main libtask-weaken-perl all 1.03-1 [7690 B] Get:200 http://mirror-ubc.debian.org/debian/ wheezy/main libmoose-perl amd64 2.0603-1 [882 kB] Get:201 http://mirror-ubc.debian.org/debian/ wheezy/main libarray-compare-perl all 2.02-1 [14.6 kB] Get:202 http://mirror-ubc.debian.org/debian/ wheezy/main libvariable-magic-perl amd64 0.50-1 [43.3 kB] Get:203 http://mirror-ubc.debian.org/debian/ wheezy/main libb-hooks-endofscope-perl all 0.11-1 [7322 B] Get:204 http://mirror-ubc.debian.org/debian/ wheezy/main libbio-asn1-entrezgene-perl all 1.100-1 [40.6 kB] Get:205 http://mirror-ubc.debian.org/debian/ wheezy/main libcarp-clan-perl all 6.04-1 [15.8 kB] Get:206 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-inspector-perl all 1.27-1 [20.6 kB] Get:207 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-accessor-grouped-perl all 0.10006-1 [20.0 kB] Get:208 http://mirror-ubc.debian.org/debian/ wheezy/main libconfig-any-perl all 0.23-1 [37.2 kB] Get:209 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-c3-componentised-perl all 1.001000-1 [14.1 kB] Get:210 http://mirror-ubc.debian.org/debian/ wheezy/main libcontext-preserve-perl all 0.01-1 [7224 B] Get:211 http://mirror-ubc.debian.org/debian/ wheezy/main libnumber-compare-perl all 0.03-1 [7642 B] Get:212 http://mirror-ubc.debian.org/debian/ wheezy/main libtext-glob-perl all 0.09-1 [8610 B] Get:213 http://mirror-ubc.debian.org/debian/ wheezy/main libfile-find-rule-perl all 0.33-1 [32.1 kB] Get:214 http://mirror-ubc.debian.org/debian/ wheezy/main libdata-compare-perl all 1.22-0.1 [22.5 kB] Get:215 http://mirror-ubc.debian.org/debian/ wheezy/main libdata-dumper-concise-perl all 2.020-1 [16.5 kB] Get:216 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-accessor-perl all 0.34-1 [25.9 kB] Get:217 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-accessor-chained-perl all 0.01.1~debian-2.1 [8008 B] Get:218 http://mirror-ubc.debian.org/debian/ wheezy/main libdata-page-perl all 2.02-1 [12.3 kB] Get:219 http://mirror-ubc.debian.org/debian/ wheezy/main libmodule-find-perl all 0.11-1 [9658 B] Get:220 http://mirror-ubc.debian.org/debian/ wheezy/main libsub-identify-perl amd64 0.04-1+b2 [9736 B] Get:221 http://mirror-ubc.debian.org/debian/ wheezy/main libnamespace-clean-perl all 0.23-1 [16.6 kB] Get:222 http://mirror-ubc.debian.org/debian/ wheezy/main libpath-class-perl all 0.26-1 [40.3 kB] Get:223 http://mirror-ubc.debian.org/debian/ wheezy/main libscope-guard-perl all 0.20-1 [8176 B] Get:224 http://mirror-ubc.debian.org/debian/ wheezy/main libio-stringy-perl all 2.110-5 [98.3 kB] Get:225 http://mirror-ubc.debian.org/debian/ wheezy/main libparams-validate-perl amd64 1.06-1 [67.4 kB] Get:226 http://mirror-ubc.debian.org/debian/ wheezy/main libgetopt-long-descriptive-perl all 0.091-1 [25.9 kB] Get:227 http://mirror-ubc.debian.org/debian/ wheezy/main libclone-perl amd64 0.31-1+b2 [13.3 kB] Get:228 http://mirror-ubc.debian.org/debian/ wheezy/main libhash-merge-perl all 0.12-2 [15.4 kB] Get:229 http://mirror-ubc.debian.org/debian/ wheezy/main libsql-abstract-perl all 1.72-1 [75.4 kB] Get:230 http://mirror-ubc.debian.org/debian/ wheezy/main libdbix-class-perl all 0.08196-3 [805 kB] Get:231 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-base-perl all 0.05-1 [19.2 kB] Get:232 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-data-inheritable-perl all 0.08-1 [8768 B] Get:233 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-makemethods-perl all 1.01-4 [361 kB] Get:234 http://mirror-ubc.debian.org/debian/ wheezy/main libfile-sharedir-perl all 1.00-0.1 [12.3 kB] Get:235 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-method-modifiers-perl all 1.09-1 [13.5 kB] Get:236 http://mirror-ubc.debian.org/debian/ wheezy/main librole-tiny-perl all 1.001003-1 [17.5 kB] Get:237 http://mirror-ubc.debian.org/debian/ wheezy/main libstrictures-perl all 1.003001-1 [9486 B] Get:238 http://mirror-ubc.debian.org/debian/ wheezy/main libmoo-perl all 0.091011-1 [46.4 kB] Get:239 http://mirror-ubc.debian.org/debian/ wheezy/main libparse-recdescent-perl all 1.967009+dfsg-1 [172 kB] Get:240 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-writer-perl all 0.615-1 [30.3 kB] Get:241 http://mirror-ubc.debian.org/debian/ wheezy/main libsql-translator-perl all 0.11011-1 [874 kB] Get:242 http://mirror-ubc.debian.org/debian/ wheezy/main libdbd-sqlite3-perl amd64 1.37-1 [113 kB] Get:243 http://mirror-ubc.debian.org/debian/ wheezy/main libdbicx-testdatabase-perl all 0.04-1 [9964 B] Get:244 http://mirror-ubc.debian.org/debian/ wheezy/main libdbix-class-tree-nestedset-perl all 0.10-1 [19.6 kB] Get:245 http://mirror-ubc.debian.org/debian/ wheezy/main libbio-chado-schema-perl all 0.10010-1 [112 kB] Get:246 http://mirror-ubc.debian.org/debian/ wheezy/main libbit-vector-perl amd64 7.2-1 [172 kB] Get:247 http://mirror-ubc.debian.org/debian/ wheezy/main libbsd-resource-perl amd64 1.2904-1+b2 [31.9 kB] Get:248 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-c3-xs-perl amd64 0.13-1+b2 [16.1 kB] Get:249 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-xsaccessor-perl amd64 1.13-1 [44.0 kB] Get:250 http://mirror-ubc.debian.org/debian/ wheezy/main libcommon-sense-perl all 3.6-1 [23.7 kB] Get:251 http://mirror-ubc.debian.org/debian/ wheezy/main libconfig-general-perl all 2.50-1 [70.9 kB] Get:252 http://mirror-ubc.debian.org/debian/ wheezy/main libconfig-tiny-perl all 2.14-1 [14.2 kB] Get:253 http://mirror-ubc.debian.org/debian/ wheezy/main libconvert-binary-c-perl amd64 0.76-1+b2 [314 kB] Get:254 http://mirror-ubc.debian.org/debian/ wheezy/main libconvert-binhex-perl all 1.119+pristine-3 [30.3 kB] Get:255 http://mirror-ubc.debian.org/debian/ wheezy/main libcrypt-ssleay-perl amd64 0.58-1 [51.8 kB] Get:256 http://mirror-ubc.debian.org/debian/ wheezy/main libdate-calc-perl all 6.3-1 [218 kB] Get:257 http://mirror-ubc.debian.org/debian/ wheezy/main libdate-calc-xs-perl amd64 6.3-1 [65.1 kB] Get:258 http://mirror-ubc.debian.org/debian/ wheezy/main libdate-manip-perl all 6.32-1 [2870 kB] Get:259 http://mirror-ubc.debian.org/debian/ wheezy/main libdbd-mysql-perl amd64 4.021-1+b1 [126 kB] Get:260 http://mirror-ubc.debian.org/debian/ wheezy/main libdbd-pg-perl amd64 2.19.2-2+deb7u1 [220 kB] Get:261 http://mirror-ubc.debian.org/debian/ wheezy/main libpadwalker-perl amd64 1.94-1 [22.0 kB] Get:262 http://mirror-ubc.debian.org/debian/ wheezy/main libdevel-argnames-perl all 0.03-1 [6020 B] Get:263 http://mirror-ubc.debian.org/debian/ wheezy/main libdevel-partialdump-perl all 0.15-1 [13.3 kB] Get:264 http://mirror-ubc.debian.org/debian/ wheezy/main libfcgi-perl amd64 0.74-1+b1 [42.8 kB] Get:265 http://mirror-ubc.debian.org/debian/ wheezy/main libfont-afm-perl all 1.20-1 [14.4 kB] Get:266 http://mirror-ubc.debian.org/debian/ wheezy/main libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:267 http://mirror-ubc.debian.org/debian/ wheezy/main libglib2.0-data all 2.33.12+really2.32.4-5 [1607 kB] Get:268 http://mirror-ubc.debian.org/debian/ wheezy/main libheap-perl all 0.80-2 [43.0 kB] Get:269 http://mirror-ubc.debian.org/debian/ wheezy/main libgraph-perl all 1:0.91-1 [132 kB] Get:270 http://mirror-ubc.debian.org/debian/ wheezy/main libio-pty-perl amd64 1:1.08-1+b2 [40.0 kB] Get:271 http://mirror-ubc.debian.org/debian/ wheezy/main libipc-run-perl all 0.92-1 [110 kB] Get:272 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-parser-perl amd64 2.41-1+b1 [278 kB] Get:273 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-twig-perl all 1:3.39-1 [189 kB] Get:274 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-xpath-perl all 1.13-7 [79.6 kB] Get:275 http://mirror-ubc.debian.org/debian/ wheezy/main libgraphviz-perl all 2.10-1 [113 kB] Get:276 http://mirror-ubc.debian.org/debian/ wheezy/main libhtml-form-perl all 6.03-1 [23.9 kB] Get:277 http://mirror-ubc.debian.org/debian/ wheezy/main libhtml-format-perl all 2.10-1 [42.1 kB] Get:278 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:279 http://mirror-ubc.debian.org/debian/ wheezy/main libsocket-perl amd64 2.002-1 [40.0 kB] Get:280 http://mirror-ubc.debian.org/debian/ wheezy/main libio-socket-ip-perl all 0.16-2 [23.6 kB] Get:281 http://mirror-ubc.debian.org/debian/ wheezy/main libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:282 http://mirror-ubc.debian.org/debian/ wheezy/main libjson-perl all 2.53-1 [99.9 kB] Get:283 http://mirror-ubc.debian.org/debian/ wheezy/main libjson-xs-perl amd64 2.320-1+b1 [89.1 kB] Get:284 http://mirror-ubc.debian.org/debian/ wheezy/main libmailtools-perl all 2.09-1 [97.6 kB] Get:285 http://mirror-ubc.debian.org/debian/ wheezy/main libmath-derivative-perl all 0.01-6 [6214 B] Get:286 http://mirror-ubc.debian.org/debian/ wheezy/main libmath-spline-perl all 0.01-4 [7680 B] Get:287 http://mirror-ubc.debian.org/debian/ wheezy/main libmime-tools-perl all 5.503-1 [242 kB] Get:288 http://mirror-ubc.debian.org/debian/ wheezy/main libmldbm-perl all 2.04-1 [19.1 kB] Get:289 http://mirror-ubc.debian.org/debian/ wheezy/main libole-storage-lite-perl all 0.19-1 [26.1 kB] Get:290 http://mirror-ubc.debian.org/debian/ wheezy/main libossp-uuid16 amd64 1.6.2-1.3 [58.8 kB] Get:291 http://mirror-ubc.debian.org/debian/ wheezy/main libossp-uuid-perl amd64 1.6.2-1.3 [31.6 kB] Get:292 http://mirror-ubc.debian.org/debian/ wheezy/main libpaper-utils amd64 1.1.24+nmu2 [18.3 kB] Get:293 http://mirror-ubc.debian.org/debian/ wheezy/main libpostscript-perl all 0.06-2 [31.4 kB] Get:294 http://mirror-ubc.debian.org/debian/ wheezy/main libreadonly-perl all 1.03-4 [19.9 kB] Get:295 http://mirror-ubc.debian.org/debian/ wheezy/main libreadonly-xs-perl amd64 1.04-2+b3 [11.2 kB] Get:296 http://mirror-ubc.debian.org/debian/ wheezy/main libruby1.9.1 amd64 1.9.3.194-8.1+deb7u5 [4414 kB] Get:297 http://mirror-ubc.debian.org/debian/ wheezy/main libsasl2-modules amd64 2.1.25.dfsg1-6+deb7u1 [116 kB] Get:298 http://mirror-ubc.debian.org/debian/ wheezy/main libsoap-lite-perl all 0.714-1 [343 kB] Get:299 http://mirror-ubc.debian.org/debian/ wheezy/main libsort-naturally-perl all 1.02-1 [14.3 kB] Get:300 http://mirror-ubc.debian.org/debian/ wheezy/main libspreadsheet-writeexcel-perl all 2.37-1 [741 kB] Get:301 http://mirror-ubc.debian.org/debian/ wheezy/main libunicode-map-perl amd64 0.112-10+b3 [451 kB] Get:302 http://mirror-ubc.debian.org/debian/ wheezy/main libspreadsheet-parseexcel-perl all 0.5800-1 [166 kB] Get:303 http://mirror-ubc.debian.org/debian/ wheezy/main libstatistics-descriptive-perl all 3.0603-1 [42.5 kB] Get:304 http://mirror-ubc.debian.org/debian/ wheezy/main libsvg-perl all 2.52-1 [85.0 kB] Get:305 http://mirror-ubc.debian.org/debian/ wheezy/main libtree-dagnode-perl all 1.06-1 [51.8 kB] Get:306 http://mirror-ubc.debian.org/debian/ wheezy/main libsvg-graph-perl all 0.02-2 [130 kB] Get:307 http://mirror-ubc.debian.org/debian/ wheezy/main libtemplate-perl amd64 2.24-1 [672 kB] Get:308 http://mirror-ubc.debian.org/debian/ wheezy/main libtext-recordparser-perl all 1.5.0-1 [43.3 kB] Get:309 http://mirror-ubc.debian.org/debian/ wheezy/main libtext-tabulardisplay-perl all 1.33-1 [18.2 kB] Get:310 http://mirror-ubc.debian.org/debian/ wheezy/main libtie-ixhash-perl all 1.21-2 [12.0 kB] Get:311 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-perl all 0.08-2 [113 kB] Get:312 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-regexp-perl all 0.04-1 [8370 B] Get:313 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-dom-perl all 1.44-1 [184 kB] Get:314 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:315 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-dom-xpath-perl all 0.14-1 [9622 B] Get:316 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-namespacesupport-perl all 1.09-3 [15.3 kB] Get:317 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:318 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:319 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:320 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-libxml-perl amd64 2.0001+dfsg-1+deb7u1 [413 kB] Get:321 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-libxslt-perl amd64 1.77-1 [54.0 kB] Get:322 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:323 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-sax-writer-perl all 0.53-1 [24.0 kB] Get:324 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-simple-perl all 2.20-1 [74.7 kB] Get:325 http://mirror-ubc.debian.org/debian/ wheezy/main libyaml-libyaml-perl amd64 0.38-3+deb7u3 [78.6 kB] Get:326 http://mirror-ubc.debian.org/debian/ wheezy/main libyaml-perl all 0.81-1 [72.4 kB] Get:327 http://mirror-ubc.debian.org/debian/ wheezy/main maq amd64 0.7.1-5 [321 kB] Get:328 http://mirror-ubc.debian.org/debian/ wheezy/main muscle amd64 1:3.8.31-1 [169 kB] Get:329 http://mirror-ubc.debian.org/debian/ wheezy/main perl-doc all 5.14.2-21+deb7u3 [8166 kB] Get:330 http://mirror-ubc.debian.org/debian/ wheezy/main perl-tk amd64 1:804.030-1 [2524 kB] Get:331 http://mirror-ubc.debian.org/debian/ wheezy/main phyml amd64 2:20110919-1 [1075 kB] Get:332 http://mirror-ubc.debian.org/debian/ wheezy/main primer3 amd64 2.2.3-1 [189 kB] Get:333 http://mirror-ubc.debian.org/debian/ wheezy/main probcons amd64 1.12-9 [196 kB] Get:334 http://mirror-ubc.debian.org/debian/ wheezy/main psmisc amd64 22.19-1+deb7u1 [135 kB] Get:335 http://mirror-ubc.debian.org/debian/ wheezy/main ruby1.9.1 amd64 1.9.3.194-8.1+deb7u5 [209 kB] Get:336 http://mirror-ubc.debian.org/debian/ wheezy/main ruby all 1:1.9.3 [6484 B] Get:337 http://mirror-ubc.debian.org/debian/ wheezy/main samtools amd64 0.1.18-1 [528 kB] Get:338 http://mirror-ubc.debian.org/debian/ wheezy/main shared-mime-info amd64 1.0-1+b1 [595 kB] Get:339 http://mirror-ubc.debian.org/debian/ wheezy/main sim4 amd64 0.0.20030921-3 [54.7 kB] Get:340 http://mirror-ubc.debian.org/debian/ wheezy/main ssl-cert all 1.0.32+deb7u1 [19.6 kB] Get:341 http://mirror-ubc.debian.org/debian/ wheezy/main t-coffee amd64 9.02.r1228-2 [848 kB] Get:342 http://mirror-ubc.debian.org/debian/ wheezy/main tigr-glimmer amd64 3.02-2 [442 kB] Get:343 http://mirror-ubc.debian.org/debian/ wheezy/main tm-align amd64 20120507-1 [62.9 kB] Get:344 http://mirror-ubc.debian.org/debian/ wheezy/main xml-core all 0.13+nmu2 [24.2 kB] Get:345 http://mirror-ubc.debian.org/debian/ wheezy/main bowtie amd64 0.12.7-3 [1285 kB] Get:346 http://mirror-ubc.debian.org/debian/ wheezy/main libgd-gd2-perl amd64 1:2.46-3+b1 [200 kB] Get:347 http://mirror-ubc.debian.org/debian/ wheezy/main libset-scalar-perl all 1.25-1 [36.6 kB] Get:348 http://mirror-ubc.debian.org/debian/ wheezy/main lynx-cur amd64 2.8.8dev.12-2 [2249 kB] Get:349 http://mirror-ubc.debian.org/debian/ wheezy/main lynx all 2.8.8dev.12-2 [223 kB] Get:350 http://mirror-ubc.debian.org/debian/ wheezy/main ttf-liberation all 1.07.2-6 [9284 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 169 MB in 10s (16.5 MB/s) Selecting previously unselected package iproute. (Reading database ... 6657 files and directories currently installed.) Unpacking iproute (from .../iproute_20120521-3+b3_amd64.deb) ... Selecting previously unselected package ifupdown. Unpacking ifupdown (from .../ifupdown_0.7.8_amd64.deb) ... Selecting previously unselected package libgdbm3:amd64. Unpacking libgdbm3:amd64 (from .../libgdbm3_1.8.3-11_amd64.deb) ... Selecting previously unselected package libncursesw5:amd64. Unpacking libncursesw5:amd64 (from .../libncursesw5_5.9-10_amd64.deb) ... Selecting previously unselected package libprocps0:amd64. Unpacking libprocps0:amd64 (from .../libprocps0_1%3a3.3.3-3_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package libcap2:amd64. Unpacking libcap2:amd64 (from .../libcap2_1%3a2.22-1.2_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3.1_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. Unpacking libgcrypt11:amd64 (from .../libgcrypt11_1.5.0-5+deb7u4_amd64.deb) ... Selecting previously unselected package libp11-kit0:amd64. Unpacking libp11-kit0:amd64 (from .../libp11-kit0_0.12-3_amd64.deb) ... Selecting previously unselected package libtasn1-3:amd64. Unpacking libtasn1-3:amd64 (from .../libtasn1-3_2.13-2+deb7u2_amd64.deb) ... Selecting previously unselected package libgnutls26:amd64. Unpacking libgnutls26:amd64 (from .../libgnutls26_2.12.20-8+deb7u5_amd64.deb) ... Selecting previously unselected package libgpm2:amd64. Unpacking libgpm2:amd64 (from .../libgpm2_1.20.4-6_amd64.deb) ... Selecting previously unselected package libkeyutils1:amd64. Unpacking libkeyutils1:amd64 (from .../libkeyutils1_1.5.5-3+deb7u1_amd64.deb) ... Selecting previously unselected package libkrb5support0:amd64. Unpacking libkrb5support0:amd64 (from .../libkrb5support0_1.10.1+dfsg-5+deb7u7_amd64.deb) ... Selecting previously unselected package libk5crypto3:amd64. Unpacking libk5crypto3:amd64 (from .../libk5crypto3_1.10.1+dfsg-5+deb7u7_amd64.deb) ... Selecting previously unselected package libkrb5-3:amd64. Unpacking libkrb5-3:amd64 (from .../libkrb5-3_1.10.1+dfsg-5+deb7u7_amd64.deb) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Unpacking libgssapi-krb5-2:amd64 (from .../libgssapi-krb5-2_1.10.1+dfsg-5+deb7u7_amd64.deb) ... Selecting previously unselected package libidn11:amd64. Unpacking libidn11:amd64 (from .../libidn11_1.25-2_amd64.deb) ... Selecting previously unselected package libsasl2-2:amd64. Unpacking libsasl2-2:amd64 (from .../libsasl2-2_2.1.25.dfsg1-6+deb7u1_amd64.deb) ... Selecting previously unselected package libldap-2.4-2:amd64. Unpacking libldap-2.4-2:amd64 (from .../libldap-2.4-2_2.4.31-2+deb7u2_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-2+deb7u8_amd64.deb) ... Selecting previously unselected package libpcre3:amd64. Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.30-5_amd64.deb) ... Selecting previously unselected package libsqlite3-0:amd64. Unpacking libsqlite3-0:amd64 (from .../libsqlite3-0_3.7.13-1+deb7u2_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.8.0+dfsg1-7+wheezy5_amd64.deb) ... Selecting previously unselected package bedtools. Unpacking bedtools (from .../bedtools_2.16.1-1_amd64.deb) ... Selecting previously unselected package libatm1:amd64. Unpacking libatm1:amd64 (from .../libatm1_1%3a2.5.1-1.5_amd64.deb) ... Selecting previously unselected package libavahi-common-data:amd64. Unpacking libavahi-common-data:amd64 (from .../libavahi-common-data_0.6.31-2_amd64.deb) ... Selecting previously unselected package libavahi-common3:amd64. Unpacking libavahi-common3:amd64 (from .../libavahi-common3_0.6.31-2_amd64.deb) ... Selecting previously unselected package libdbus-1-3:amd64. Unpacking libdbus-1-3:amd64 (from .../libdbus-1-3_1.6.8-1+deb7u6_amd64.deb) ... Selecting previously unselected package libavahi-client3:amd64. Unpacking libavahi-client3:amd64 (from .../libavahi-client3_0.6.31-2_amd64.deb) ... Selecting previously unselected package libbsd0:amd64. Unpacking libbsd0:amd64 (from .../libbsd0_0.4.2-1_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libfreetype6:amd64. Unpacking libfreetype6:amd64 (from .../libfreetype6_2.4.9-1.1+deb7u3_amd64.deb) ... Selecting previously unselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-3_all.deb) ... Selecting previously unselected package fontconfig-config. 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Selecting previously unselected package libmodule-runtime-perl. Unpacking libmodule-runtime-perl (from .../libmodule-runtime-perl_0.013-1_all.deb) ... Selecting previously unselected package libtry-tiny-perl. Unpacking libtry-tiny-perl (from .../libtry-tiny-perl_0.11-1_all.deb) ... Selecting previously unselected package libmodule-implementation-perl. Unpacking libmodule-implementation-perl (from .../libmodule-implementation-perl_0.06-1_all.deb) ... Selecting previously unselected package liblist-moreutils-perl. Unpacking liblist-moreutils-perl (from .../liblist-moreutils-perl_0.33-1+b1_amd64.deb) ... Selecting previously unselected package libpackage-deprecationmanager-perl. Unpacking libpackage-deprecationmanager-perl (from .../libpackage-deprecationmanager-perl_0.13-1_all.deb) ... Selecting previously unselected package libpackage-stash-perl. Unpacking libpackage-stash-perl (from .../libpackage-stash-perl_0.33-1_all.deb) ... Selecting previously unselected package libclass-load-perl. Unpacking libclass-load-perl (from .../libclass-load-perl_0.17-1_all.deb) ... Selecting previously unselected package libclass-load-xs-perl. Unpacking libclass-load-xs-perl (from .../libclass-load-xs-perl_0.04-1_amd64.deb) ... Selecting previously unselected package libsub-exporter-perl. Unpacking libsub-exporter-perl (from .../libsub-exporter-perl_0.984-1_all.deb) ... Selecting previously unselected package libdevel-globaldestruction-perl. Unpacking libdevel-globaldestruction-perl (from .../libdevel-globaldestruction-perl_0.06-1_all.deb) ... Selecting previously unselected package libeval-closure-perl. Unpacking libeval-closure-perl (from .../libeval-closure-perl_0.08-1_all.deb) ... Selecting previously unselected package libclass-c3-perl. Unpacking libclass-c3-perl (from .../libclass-c3-perl_0.24-1_all.deb) ... Selecting previously unselected package libmro-compat-perl. 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Selecting previously unselected package libb-hooks-endofscope-perl. Unpacking libb-hooks-endofscope-perl (from .../libb-hooks-endofscope-perl_0.11-1_all.deb) ... Selecting previously unselected package libbio-asn1-entrezgene-perl. Unpacking libbio-asn1-entrezgene-perl (from .../libbio-asn1-entrezgene-perl_1.100-1_all.deb) ... Selecting previously unselected package libcarp-clan-perl. Unpacking libcarp-clan-perl (from .../libcarp-clan-perl_6.04-1_all.deb) ... Selecting previously unselected package libclass-inspector-perl. Unpacking libclass-inspector-perl (from .../libclass-inspector-perl_1.27-1_all.deb) ... Selecting previously unselected package libclass-accessor-grouped-perl. Unpacking libclass-accessor-grouped-perl (from .../libclass-accessor-grouped-perl_0.10006-1_all.deb) ... Selecting previously unselected package libconfig-any-perl. Unpacking libconfig-any-perl (from .../libconfig-any-perl_0.23-1_all.deb) ... Selecting previously unselected package libclass-c3-componentised-perl. Unpacking libclass-c3-componentised-perl (from .../libclass-c3-componentised-perl_1.001000-1_all.deb) ... Selecting previously unselected package libcontext-preserve-perl. Unpacking libcontext-preserve-perl (from .../libcontext-preserve-perl_0.01-1_all.deb) ... Selecting previously unselected package libnumber-compare-perl. Unpacking libnumber-compare-perl (from .../libnumber-compare-perl_0.03-1_all.deb) ... Selecting previously unselected package libtext-glob-perl. Unpacking libtext-glob-perl (from .../libtext-glob-perl_0.09-1_all.deb) ... Selecting previously unselected package libfile-find-rule-perl. Unpacking libfile-find-rule-perl (from .../libfile-find-rule-perl_0.33-1_all.deb) ... Selecting previously unselected package libdata-compare-perl. Unpacking libdata-compare-perl (from .../libdata-compare-perl_1.22-0.1_all.deb) ... Selecting previously unselected package libdata-dumper-concise-perl. 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Unpacking libnamespace-clean-perl (from .../libnamespace-clean-perl_0.23-1_all.deb) ... Selecting previously unselected package libpath-class-perl. Unpacking libpath-class-perl (from .../libpath-class-perl_0.26-1_all.deb) ... Selecting previously unselected package libscope-guard-perl. Unpacking libscope-guard-perl (from .../libscope-guard-perl_0.20-1_all.deb) ... Selecting previously unselected package libio-stringy-perl. Unpacking libio-stringy-perl (from .../libio-stringy-perl_2.110-5_all.deb) ... Selecting previously unselected package libparams-validate-perl. Unpacking libparams-validate-perl (from .../libparams-validate-perl_1.06-1_amd64.deb) ... Selecting previously unselected package libgetopt-long-descriptive-perl. Unpacking libgetopt-long-descriptive-perl (from .../libgetopt-long-descriptive-perl_0.091-1_all.deb) ... Selecting previously unselected package libclone-perl. Unpacking libclone-perl (from .../libclone-perl_0.31-1+b2_amd64.deb) ... Selecting previously unselected package libhash-merge-perl. Unpacking libhash-merge-perl (from .../libhash-merge-perl_0.12-2_all.deb) ... Selecting previously unselected package libsql-abstract-perl. Unpacking libsql-abstract-perl (from .../libsql-abstract-perl_1.72-1_all.deb) ... Selecting previously unselected package libdbix-class-perl. Unpacking libdbix-class-perl (from .../libdbix-class-perl_0.08196-3_all.deb) ... Selecting previously unselected package libclass-base-perl. Unpacking libclass-base-perl (from .../libclass-base-perl_0.05-1_all.deb) ... Selecting previously unselected package libclass-data-inheritable-perl. Unpacking libclass-data-inheritable-perl (from .../libclass-data-inheritable-perl_0.08-1_all.deb) ... Selecting previously unselected package libclass-makemethods-perl. Unpacking libclass-makemethods-perl (from .../libclass-makemethods-perl_1.01-4_all.deb) ... Selecting previously unselected package libfile-sharedir-perl. Unpacking libfile-sharedir-perl (from .../libfile-sharedir-perl_1.00-0.1_all.deb) ... Selecting previously unselected package libclass-method-modifiers-perl. Unpacking libclass-method-modifiers-perl (from .../libclass-method-modifiers-perl_1.09-1_all.deb) ... Selecting previously unselected package librole-tiny-perl. Unpacking librole-tiny-perl (from .../librole-tiny-perl_1.001003-1_all.deb) ... Selecting previously unselected package libstrictures-perl. Unpacking libstrictures-perl (from .../libstrictures-perl_1.003001-1_all.deb) ... Selecting previously unselected package libmoo-perl. Unpacking libmoo-perl (from .../libmoo-perl_0.091011-1_all.deb) ... Selecting previously unselected package libparse-recdescent-perl. Unpacking libparse-recdescent-perl (from .../libparse-recdescent-perl_1.967009+dfsg-1_all.deb) ... Selecting previously unselected package libxml-writer-perl. Unpacking libxml-writer-perl (from .../libxml-writer-perl_0.615-1_all.deb) ... Selecting previously unselected package libsql-translator-perl. Unpacking libsql-translator-perl (from .../libsql-translator-perl_0.11011-1_all.deb) ... Selecting previously unselected package libdbd-sqlite3-perl. Unpacking libdbd-sqlite3-perl (from .../libdbd-sqlite3-perl_1.37-1_amd64.deb) ... Selecting previously unselected package libdbicx-testdatabase-perl. Unpacking libdbicx-testdatabase-perl (from .../libdbicx-testdatabase-perl_0.04-1_all.deb) ... Selecting previously unselected package libdbix-class-tree-nestedset-perl. Unpacking libdbix-class-tree-nestedset-perl (from .../libdbix-class-tree-nestedset-perl_0.10-1_all.deb) ... Selecting previously unselected package libbio-chado-schema-perl. Unpacking libbio-chado-schema-perl (from .../libbio-chado-schema-perl_0.10010-1_all.deb) ... Selecting previously unselected package libbit-vector-perl. Unpacking libbit-vector-perl (from .../libbit-vector-perl_7.2-1_amd64.deb) ... Selecting previously unselected package libbsd-resource-perl. Unpacking libbsd-resource-perl (from .../libbsd-resource-perl_1.2904-1+b2_amd64.deb) ... Selecting previously unselected package libclass-c3-xs-perl. Unpacking libclass-c3-xs-perl (from .../libclass-c3-xs-perl_0.13-1+b2_amd64.deb) ... Selecting previously unselected package libclass-xsaccessor-perl. Unpacking libclass-xsaccessor-perl (from .../libclass-xsaccessor-perl_1.13-1_amd64.deb) ... Selecting previously unselected package libcommon-sense-perl. Unpacking libcommon-sense-perl (from .../libcommon-sense-perl_3.6-1_all.deb) ... Selecting previously unselected package libconfig-general-perl. Unpacking libconfig-general-perl (from .../libconfig-general-perl_2.50-1_all.deb) ... Selecting previously unselected package libconfig-tiny-perl. Unpacking libconfig-tiny-perl (from .../libconfig-tiny-perl_2.14-1_all.deb) ... Selecting previously unselected package libconvert-binary-c-perl. 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Selecting previously unselected package libdbd-pg-perl. Unpacking libdbd-pg-perl (from .../libdbd-pg-perl_2.19.2-2+deb7u1_amd64.deb) ... Selecting previously unselected package libpadwalker-perl. Unpacking libpadwalker-perl (from .../libpadwalker-perl_1.94-1_amd64.deb) ... Selecting previously unselected package libdevel-argnames-perl. Unpacking libdevel-argnames-perl (from .../libdevel-argnames-perl_0.03-1_all.deb) ... Selecting previously unselected package libdevel-partialdump-perl. Unpacking libdevel-partialdump-perl (from .../libdevel-partialdump-perl_0.15-1_all.deb) ... Selecting previously unselected package libfcgi-perl. Unpacking libfcgi-perl (from .../libfcgi-perl_0.74-1+b1_amd64.deb) ... Selecting previously unselected package libfont-afm-perl. Unpacking libfont-afm-perl (from .../libfont-afm-perl_1.20-1_all.deb) ... Selecting previously unselected package libfreezethaw-perl. Unpacking libfreezethaw-perl (from .../libfreezethaw-perl_0.5001-1_all.deb) ... Selecting previously unselected package libglib2.0-data. Unpacking libglib2.0-data (from .../libglib2.0-data_2.33.12+really2.32.4-5_all.deb) ... Selecting previously unselected package libheap-perl. Unpacking libheap-perl (from .../libheap-perl_0.80-2_all.deb) ... Selecting previously unselected package libgraph-perl. Unpacking libgraph-perl (from .../libgraph-perl_1%3a0.91-1_all.deb) ... Selecting previously unselected package libio-pty-perl. Unpacking libio-pty-perl (from .../libio-pty-perl_1%3a1.08-1+b2_amd64.deb) ... Selecting previously unselected package libipc-run-perl. Unpacking libipc-run-perl (from .../libipc-run-perl_0.92-1_all.deb) ... Selecting previously unselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.41-1+b1_amd64.deb) ... Selecting previously unselected package libxml-twig-perl. Unpacking libxml-twig-perl (from .../libxml-twig-perl_1%3a3.39-1_all.deb) ... Selecting previously unselected package libxml-xpath-perl. Unpacking libxml-xpath-perl (from .../libxml-xpath-perl_1.13-7_all.deb) ... Selecting previously unselected package libgraphviz-perl. Unpacking libgraphviz-perl (from .../libgraphviz-perl_2.10-1_all.deb) ... Selecting previously unselected package libhtml-form-perl. Unpacking libhtml-form-perl (from .../libhtml-form-perl_6.03-1_all.deb) ... Selecting previously unselected package libhtml-format-perl. Unpacking libhtml-format-perl (from .../libhtml-format-perl_2.10-1_all.deb) ... Selecting previously unselected package libhttp-daemon-perl. Unpacking libhttp-daemon-perl (from .../libhttp-daemon-perl_6.01-1_all.deb) ... Selecting previously unselected package libsocket-perl. Unpacking libsocket-perl (from .../libsocket-perl_2.002-1_amd64.deb) ... Selecting previously unselected package libio-socket-ip-perl. Unpacking libio-socket-ip-perl (from .../libio-socket-ip-perl_0.16-2_all.deb) ... Selecting previously unselected package libjcode-pm-perl. Unpacking libjcode-pm-perl (from .../libjcode-pm-perl_2.06-1_amd64.deb) ... Selecting previously unselected package libjson-perl. Unpacking libjson-perl (from .../libjson-perl_2.53-1_all.deb) ... Selecting previously unselected package libjson-xs-perl. Unpacking libjson-xs-perl (from .../libjson-xs-perl_2.320-1+b1_amd64.deb) ... Selecting previously unselected package libmailtools-perl. Unpacking libmailtools-perl (from .../libmailtools-perl_2.09-1_all.deb) ... Selecting previously unselected package libmath-derivative-perl. Unpacking libmath-derivative-perl (from .../libmath-derivative-perl_0.01-6_all.deb) ... Selecting previously unselected package libmath-spline-perl. Unpacking libmath-spline-perl (from .../libmath-spline-perl_0.01-4_all.deb) ... Selecting previously unselected package libmime-tools-perl. Unpacking libmime-tools-perl (from .../libmime-tools-perl_5.503-1_all.deb) ... Selecting previously unselected package libmldbm-perl. Unpacking libmldbm-perl (from .../libmldbm-perl_2.04-1_all.deb) ... Selecting previously unselected package libole-storage-lite-perl. Unpacking libole-storage-lite-perl (from .../libole-storage-lite-perl_0.19-1_all.deb) ... Selecting previously unselected package libossp-uuid16. Unpacking libossp-uuid16 (from .../libossp-uuid16_1.6.2-1.3_amd64.deb) ... Selecting previously unselected package libossp-uuid-perl. Unpacking libossp-uuid-perl (from .../libossp-uuid-perl_1.6.2-1.3_amd64.deb) ... Selecting previously unselected package libpaper-utils. Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_amd64.deb) ... Selecting previously unselected package libpostscript-perl. Unpacking libpostscript-perl (from .../libpostscript-perl_0.06-2_all.deb) ... Selecting previously unselected package libreadonly-perl. Unpacking libreadonly-perl (from .../libreadonly-perl_1.03-4_all.deb) ... Selecting previously unselected package libreadonly-xs-perl. Unpacking libreadonly-xs-perl (from .../libreadonly-xs-perl_1.04-2+b3_amd64.deb) ... Selecting previously unselected package libruby1.9.1. Unpacking libruby1.9.1 (from .../libruby1.9.1_1.9.3.194-8.1+deb7u5_amd64.deb) ... Selecting previously unselected package libsasl2-modules:amd64. Unpacking libsasl2-modules:amd64 (from .../libsasl2-modules_2.1.25.dfsg1-6+deb7u1_amd64.deb) ... Selecting previously unselected package libsoap-lite-perl. Unpacking libsoap-lite-perl (from .../libsoap-lite-perl_0.714-1_all.deb) ... Selecting previously unselected package libsort-naturally-perl. Unpacking libsort-naturally-perl (from .../libsort-naturally-perl_1.02-1_all.deb) ... Selecting previously unselected package libspreadsheet-writeexcel-perl. Unpacking libspreadsheet-writeexcel-perl (from .../libspreadsheet-writeexcel-perl_2.37-1_all.deb) ... Selecting previously unselected package libunicode-map-perl. Unpacking libunicode-map-perl (from .../libunicode-map-perl_0.112-10+b3_amd64.deb) ... Selecting previously unselected package libspreadsheet-parseexcel-perl. Unpacking libspreadsheet-parseexcel-perl (from .../libspreadsheet-parseexcel-perl_0.5800-1_all.deb) ... Selecting previously unselected package libstatistics-descriptive-perl. Unpacking libstatistics-descriptive-perl (from .../libstatistics-descriptive-perl_3.0603-1_all.deb) ... Selecting previously unselected package libsvg-perl. Unpacking libsvg-perl (from .../libsvg-perl_2.52-1_all.deb) ... Selecting previously unselected package libtree-dagnode-perl. Unpacking libtree-dagnode-perl (from .../libtree-dagnode-perl_1.06-1_all.deb) ... Selecting previously unselected package libsvg-graph-perl. Unpacking libsvg-graph-perl (from .../libsvg-graph-perl_0.02-2_all.deb) ... Selecting previously unselected package libtemplate-perl. Unpacking libtemplate-perl (from .../libtemplate-perl_2.24-1_amd64.deb) ... Selecting previously unselected package libtext-recordparser-perl. Unpacking libtext-recordparser-perl (from .../libtext-recordparser-perl_1.5.0-1_all.deb) ... Selecting previously unselected package libtext-tabulardisplay-perl. Unpacking libtext-tabulardisplay-perl (from .../libtext-tabulardisplay-perl_1.33-1_all.deb) ... Selecting previously unselected package libtie-ixhash-perl. Unpacking libtie-ixhash-perl (from .../libtie-ixhash-perl_1.21-2_all.deb) ... Selecting previously unselected package libxml-perl. Unpacking libxml-perl (from .../libxml-perl_0.08-2_all.deb) ... Selecting previously unselected package libxml-regexp-perl. Unpacking libxml-regexp-perl (from .../libxml-regexp-perl_0.04-1_all.deb) ... Selecting previously unselected package libxml-dom-perl. Unpacking libxml-dom-perl (from .../libxml-dom-perl_1.44-1_all.deb) ... Selecting previously unselected package libxml-xpathengine-perl. Unpacking libxml-xpathengine-perl (from .../libxml-xpathengine-perl_0.13-1_all.deb) ... Selecting previously unselected package libxml-dom-xpath-perl. Unpacking libxml-dom-xpath-perl (from .../libxml-dom-xpath-perl_0.14-1_all.deb) ... Selecting previously unselected package libxml-namespacesupport-perl. Unpacking libxml-namespacesupport-perl (from .../libxml-namespacesupport-perl_1.09-3_all.deb) ... Selecting previously unselected package libxml-sax-base-perl. Unpacking libxml-sax-base-perl (from .../libxml-sax-base-perl_1.07-1_all.deb) ... Selecting previously unselected package libxml-sax-perl. Unpacking libxml-sax-perl (from .../libxml-sax-perl_0.99+dfsg-2_all.deb) ... Selecting previously unselected package libxml-filter-buffertext-perl. Unpacking libxml-filter-buffertext-perl (from .../libxml-filter-buffertext-perl_1.01-5_all.deb) ... Selecting previously unselected package libxml-libxml-perl. Unpacking libxml-libxml-perl (from .../libxml-libxml-perl_2.0001+dfsg-1+deb7u1_amd64.deb) ... Selecting previously unselected package libxml-libxslt-perl. Unpacking libxml-libxslt-perl (from .../libxml-libxslt-perl_1.77-1_amd64.deb) ... Selecting previously unselected package libxml-sax-expat-perl. Unpacking libxml-sax-expat-perl (from .../libxml-sax-expat-perl_0.40-2_all.deb) ... Selecting previously unselected package libxml-sax-writer-perl. Unpacking libxml-sax-writer-perl (from .../libxml-sax-writer-perl_0.53-1_all.deb) ... Selecting previously unselected package libxml-simple-perl. Unpacking libxml-simple-perl (from .../libxml-simple-perl_2.20-1_all.deb) ... Selecting previously unselected package libyaml-libyaml-perl. Unpacking libyaml-libyaml-perl (from .../libyaml-libyaml-perl_0.38-3+deb7u3_amd64.deb) ... Selecting previously unselected package libyaml-perl. Unpacking libyaml-perl (from .../libyaml-perl_0.81-1_all.deb) ... Selecting previously unselected package maq. Unpacking maq (from .../archives/maq_0.7.1-5_amd64.deb) ... Selecting previously unselected package muscle. Unpacking muscle (from .../muscle_1%3a3.8.31-1_amd64.deb) ... Selecting previously unselected package perl-doc. Unpacking perl-doc (from .../perl-doc_5.14.2-21+deb7u3_all.deb) ... Adding 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Selecting previously unselected package perl-tk. Unpacking perl-tk (from .../perl-tk_1%3a804.030-1_amd64.deb) ... Selecting previously unselected package phyml. Unpacking phyml (from .../phyml_2%3a20110919-1_amd64.deb) ... Selecting previously unselected package primer3. Unpacking primer3 (from .../primer3_2.2.3-1_amd64.deb) ... Selecting previously unselected package probcons. Unpacking probcons (from .../probcons_1.12-9_amd64.deb) ... Selecting previously unselected package psmisc. Unpacking psmisc (from .../psmisc_22.19-1+deb7u1_amd64.deb) ... Selecting previously unselected package ruby1.9.1. Unpacking ruby1.9.1 (from .../ruby1.9.1_1.9.3.194-8.1+deb7u5_amd64.deb) ... Selecting previously unselected package ruby. Unpacking ruby (from .../ruby_1%3a1.9.3_all.deb) ... Selecting previously unselected package samtools. Unpacking samtools (from .../samtools_0.1.18-1_amd64.deb) ... Selecting previously unselected package shared-mime-info. Unpacking shared-mime-info (from .../shared-mime-info_1.0-1+b1_amd64.deb) ... Selecting previously unselected package sim4. Unpacking sim4 (from .../sim4_0.0.20030921-3_amd64.deb) ... Selecting previously unselected package ssl-cert. Unpacking ssl-cert (from .../ssl-cert_1.0.32+deb7u1_all.deb) ... Selecting previously unselected package t-coffee. Unpacking t-coffee (from .../t-coffee_9.02.r1228-2_amd64.deb) ... Selecting previously unselected package tigr-glimmer. Unpacking tigr-glimmer (from .../tigr-glimmer_3.02-2_amd64.deb) ... Selecting previously unselected package tm-align. Unpacking tm-align (from .../tm-align_20120507-1_amd64.deb) ... Selecting previously unselected package xml-core. Unpacking xml-core (from .../xml-core_0.13+nmu2_all.deb) ... Selecting previously unselected package bowtie. Unpacking bowtie (from .../bowtie_0.12.7-3_amd64.deb) ... Selecting previously unselected package libgd-gd2-perl. Unpacking libgd-gd2-perl (from .../libgd-gd2-perl_1%3a2.46-3+b1_amd64.deb) ... Selecting previously unselected package libset-scalar-perl. Unpacking libset-scalar-perl (from .../libset-scalar-perl_1.25-1_all.deb) ... Selecting previously unselected package lynx-cur. Unpacking lynx-cur (from .../lynx-cur_2.8.8dev.12-2_amd64.deb) ... Selecting previously unselected package lynx. Unpacking lynx (from .../lynx_2.8.8dev.12-2_all.deb) ... Selecting previously unselected package ttf-liberation. Unpacking ttf-liberation (from .../ttf-liberation_1.07.2-6_all.deb) ... Setting up iproute (20120521-3+b3) ... Setting up ifupdown (0.7.8) ... Creating /etc/network/interfaces. Setting up libgdbm3:amd64 (1.8.3-11) ... Setting up libncursesw5:amd64 (5.9-10) ... Setting up libprocps0:amd64 (1:3.3.3-3) ... Setting up libssl1.0.0:amd64 (1.0.1e-2+deb7u20) ... Setting up libcap2:amd64 (1:2.22-1.2) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2+deb7u2) ... Setting up libgnutls26:amd64 (2.12.20-8+deb7u5) ... Setting up libgpm2:amd64 (1.20.4-6) ... Setting up libkeyutils1:amd64 (1.5.5-3+deb7u1) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libidn11:amd64 (1.25-2) ... Setting up libsasl2-2:amd64 (2.1.25.dfsg1-6+deb7u1) ... Setting up libldap-2.4-2:amd64 (2.4.31-2+deb7u2) ... Setting up libmagic1:amd64 (5.11-2+deb7u8) ... Setting up libpcre3:amd64 (1:8.30-5) ... Setting up libsqlite3-0:amd64 (3.7.13-1+deb7u2) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7+wheezy5) ... Setting up bedtools (2.16.1-1) ... Setting up libatm1:amd64 (1:2.5.1-1.5) ... Setting up libavahi-common-data:amd64 (0.6.31-2) ... Setting up libavahi-common3:amd64 (0.6.31-2) ... Setting up libdbus-1-3:amd64 (1.6.8-1+deb7u6) ... Setting up libavahi-client3:amd64 (0.6.31-2) ... Setting up libbsd0:amd64 (0.4.2-1) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u2) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u3) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1) ... Setting up libpixman-1-0:amd64 (0.26.0-4+deb7u2) ... Setting up libpng12-0:amd64 (1.2.49-1+deb7u2) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u2) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u2) ... Setting up libxcb-render0:amd64 (1.8.1-2+deb7u1) ... Setting up libxcb-shm0:amd64 (1.8.1-2+deb7u1) ... Setting up libxrender1:amd64 (1:0.9.7-1+deb7u2) ... Setting up libcairo2:amd64 (1.12.2-3) ... Setting up libcups2:amd64 (1.5.3-5+deb7u6) ... Setting up libjpeg8:amd64 (8d-1+deb7u1) ... Setting up libjbig0:amd64 (2.0-2+deb7u1) ... Setting up libtiff4:amd64 (3.9.6-11) ... Setting up libcupsimage2:amd64 (1.5.3-5+deb7u6) ... Setting up libdatrie1:amd64 (0.2.5-3) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libxpm4:amd64 (1:3.5.10-1) ... Setting up libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Setting up libquadmath0:amd64 (4.7.2-5) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up libglib2.0-0:amd64 (2.33.12+really2.32.4-5) ... No schema files found: doing nothing. Setting up x11-common (1:7.7+3~deb7u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up libjasper1:amd64 (1.900.1-13+deb7u4) ... Setting up liblcms2-2:amd64 (2.2+git20110628-2.2+deb7u1) ... Setting up libltdl7:amd64 (2.4.2-1.1) ... Setting up mysql-common (5.5.47-0+deb7u1) ... Setting up libmysqlclient18:amd64 (5.5.47-0+deb7u1) ... Setting up ncbi-data (6.1.20120620-2) ... Setting up libncbi6:amd64 (6.1.20120620-2) ... Setting up libthai-data (0.1.18-2) ... Setting up libthai0:amd64 (0.1.18-2) ... Setting up libxft2:amd64 (2.3.1-1) ... Setting up fontconfig (2.9.0-7.1) ... Regenerating fonts cache... done. Setting up libpango1.0-0:amd64 (1.30.0-1) ... Setting up libpaper1:amd64 (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libxext6:amd64 (2:1.3.1-2+deb7u1) ... Setting up libxt6:amd64 (1:1.1.3-1+deb7u1) ... Setting up libxmu6:amd64 (2:1.1.1-1) ... Setting up libxaw7:amd64 (2:1.0.10-2) ... Setting up libxslt1.1:amd64 (1.1.26-14.1) ... Setting up libyaml-0-2:amd64 (0.1.4-2+deb7u5) ... Setting up libclass-isa-perl (0.36-3) ... Setting up mafft (6.864-1) ... Setting up poppler-data (0.4.5-10) ... Setting up wise (2.4.1-10) ... Setting up libsystemd-login0:amd64 (44-11+deb7u4) ... Setting up adduser (3.113+nmu3) ... Setting up netbase (5.0) ... Setting up procps (1:3.3.3-3) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode invoke-rc.d: policy-rc.d denied execution of start. Setting up file (5.11-2+deb7u8) ... Setting up krb5-locales (1.10.1+dfsg-5+deb7u7) ... Setting up mime-support (3.52-1+deb7u1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up amap-align (2.2-3) ... Setting up libapr1 (1.4.6-3+deb7u1) ... Setting up libaprutil1 (1.4.1-3) ... Setting up libaprutil1-dbd-sqlite3 (1.4.1-3) ... Setting up libaprutil1-ldap (1.4.1-3) ... Setting up apache2.2-bin (2.2.22-13+deb7u6) ... Setting up apache2-utils (2.2.22-13+deb7u6) ... Setting up blast2 (1:2.2.26.20120620-2) ... Setting up bwa (0.6.2-1) ... Setting up openssl (1.0.1e-2+deb7u20) ... Setting up ca-certificates (20130119+deb7u1) ... Setting up clustalw (2.1+lgpl-2) ... Setting up dbus (1.6.8-1+deb7u6) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up dialign (2.2.1-5) ... Setting up libhpdf-2.2.1 (2.2.1-1) ... Setting up libpq5 (9.1.21-0+deb7u1) ... Setting up emboss-lib (6.4.0-2) ... Setting up emboss-data (6.4.0-2) ... Setting up emboss (6.4.0-2) ... Setting up exonerate (2.2.0-6) ... Setting up fonts-droid (20111207+git-1) ... Setting up fonts-liberation (1.07.2-6) ... Setting up libijs-0.35 (0.35-8) ... Setting up libjbig2dec0 (0.11+20120125-1) ... Setting up libgs9-common (9.05~dfsg-6.3+deb7u2) ... Setting up libgs9 (9.05~dfsg-6.3+deb7u2) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Setting up ghostscript (9.05~dfsg-6.3+deb7u2) ... Setting up libcdt4 (2.26.3-14+deb7u2) ... Setting up libcgraph5 (2.26.3-14+deb7u2) ... Setting up libgraph4 (2.26.3-14+deb7u2) ... Setting up libpathplan4 (2.26.3-14+deb7u2) ... Setting up libxdot4 (2.26.3-14+deb7u2) ... Setting up libgvc5 (2.26.3-14+deb7u2) ... Setting up libgvpr1 (2.26.3-14+deb7u2) ... Setting up graphviz (2.26.3-14+deb7u2) ... Setting up hmmer (3.0-4) ... Setting up infernal (1.0.2-2) ... Setting up kalign (1:2.03+20110620-2) ... Setting up libperl5.14 (5.14.2-21+deb7u3) ... Setting up libglib2.0-data (2.33.12+really2.32.4-5) ... Setting up libossp-uuid16 (1.6.2-1.3) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Setting up libsasl2-modules:amd64 (2.1.25.dfsg1-6+deb7u1) ... Setting up maq (0.7.1-5) ... Setting up muscle (1:3.8.31-1) ... Setting up phyml (2:20110919-1) ... Setting up primer3 (2.2.3-1) ... Setting up probcons (1.12-9) ... Setting up psmisc (22.19-1+deb7u1) ... Setting up ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... update-alternatives: using /usr/bin/gem1.9.1 to provide /usr/bin/gem (gem) in auto mode update-alternatives: using /usr/bin/ruby1.9.1 to provide /usr/bin/ruby (ruby) in auto mode Setting up ruby (1:1.9.3) ... Setting up samtools (0.1.18-1) ... Setting up shared-mime-info (1.0-1+b1) ... Setting up sim4 (0.0.20030921-3) ... Setting up ssl-cert (1.0.32+deb7u1) ... Setting up t-coffee (9.02.r1228-2) ... Setting up tigr-glimmer (3.02-2) ... Setting up tm-align (20120507-1) ... Setting up bowtie (0.12.7-3) ... Setting up lynx-cur (2.8.8dev.12-2) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx (2.8.8dev.12-2) ... Setting up ttf-liberation (1.07.2-6) ... Setting up libswitch-perl (2.16-2) ... Setting up perl-modules (5.14.2-21+deb7u3) ... Setting up perl (5.14.2-21+deb7u3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libyaml-syck-perl (1.20-1) ... Setting up sgml-base (1.26+nmu4) ... Setting up apache2.2-common (2.2.22-13+deb7u6) ... Enabling site default. Enabling module alias. Enabling module autoindex. Enabling module dir. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module status. Enabling module auth_basic. Enabling module deflate. Enabling module authz_default. Enabling module authz_user. Enabling module authz_groupfile. Enabling module authn_file. Enabling module authz_host. Enabling module reqtimeout. Setting up apache2-mpm-worker (2.2.22-13+deb7u6) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up apache2 (2.2.22-13+deb7u6) ... Setting up libio-string-perl (1.08-2) ... Setting up libdata-stag-perl (0.11-2) ... Setting up libbio-perl-perl (1.6.901-3) ... Setting up bioperl (1.6.901-3) ... Setting up libbio-perl-run-perl (1.6.9-1) ... Setting up bioperl-run (1.6.9-1) ... Setting up liberror-perl (0.17-1) ... Setting up libipc-sharelite-perl (0.17-2) ... Setting up libcache-cache-perl (1.06-2) ... Setting up libace-perl (1.92-2+b2) ... Setting up libalgorithm-c3-perl (0.08-1) ... Setting up libalgorithm-diff-perl (1.19.02-2) ... Setting up libalgorithm-diff-xs-perl (0.04-2+b1) ... Setting up libalgorithm-munkres-perl (0.08-2) ... Setting up libdevel-symdump-perl (2.08-4) ... Setting up liburi-perl (1.60-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libtimedate-perl (1.2000-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-2) ... Setting up libhtml-tree-perl (5.02-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.03-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.48-1+b1) ... Setting up libio-socket-ssl-perl (1.76-2) ... Setting up libnet-http-perl (6.03-2) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libwww-perl (6.04-1) ... Setting up libapache2-mod-perl2 (2.0.7-3) ... Enabling module perl. To activate the new configuration, you need to run: service apache2 restart Setting up libdbi-perl (1.622-1+deb7u1) ... Setting up libapache-dbi-perl (1.11-1) ... Setting up libapache2-reload-perl (0.12-1) ... Setting up libappconfig-perl (1.66-1) ... Setting up libparams-util-perl (1.07-1) ... Setting up libsub-install-perl (0.926-1) ... Setting up libdata-optlist-perl (0.107-1) ... Setting up libparams-classify-perl (0.013-4) ... Setting up libmodule-runtime-perl (0.013-1) ... Setting up libtry-tiny-perl (0.11-1) ... Setting up libmodule-implementation-perl (0.06-1) ... Setting up liblist-moreutils-perl (0.33-1+b1) ... Setting up libpackage-deprecationmanager-perl (0.13-1) ... Setting up libpackage-stash-perl (0.33-1) ... Setting up libclass-load-perl (0.17-1) ... Setting up libclass-load-xs-perl (0.04-1) ... Setting up libsub-exporter-perl (0.984-1) ... Setting up libdevel-globaldestruction-perl (0.06-1) ... Setting up libeval-closure-perl (0.08-1) ... Setting up libclass-c3-perl (0.24-1) ... Setting up libmro-compat-perl (0.11-1) ... Setting up libpackage-stash-xs-perl (0.24-1+b1) ... Setting up libsub-name-perl (0.05-1+b2) ... Setting up libtask-weaken-perl (1.03-1) ... Setting up libmoose-perl (2.0603-1) ... Setting up libarray-compare-perl (2.02-1) ... Setting up libvariable-magic-perl (0.50-1) ... Setting up libb-hooks-endofscope-perl (0.11-1) ... Setting up libbio-asn1-entrezgene-perl (1.100-1) ... Setting up libcarp-clan-perl (6.04-1) ... Setting up libclass-inspector-perl (1.27-1) ... Setting up libclass-accessor-grouped-perl (0.10006-1) ... Setting up libconfig-any-perl (0.23-1) ... Setting up libclass-c3-componentised-perl (1.001000-1) ... Setting up libcontext-preserve-perl (0.01-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libtext-glob-perl (0.09-1) ... Setting up libfile-find-rule-perl (0.33-1) ... Setting up libdata-compare-perl (1.22-0.1) ... Setting up libdata-dumper-concise-perl (2.020-1) ... Setting up libclass-accessor-perl (0.34-1) ... Setting up libclass-accessor-chained-perl (0.01.1~debian-2.1) ... Setting up libdata-page-perl (2.02-1) ... Setting up libmodule-find-perl (0.11-1) ... Setting up libsub-identify-perl (0.04-1+b2) ... Setting up libnamespace-clean-perl (0.23-1) ... Setting up libpath-class-perl (0.26-1) ... Setting up libscope-guard-perl (0.20-1) ... Setting up libio-stringy-perl (2.110-5) ... Setting up libparams-validate-perl (1.06-1) ... Setting up libgetopt-long-descriptive-perl (0.091-1) ... Setting up libclone-perl (0.31-1+b2) ... Setting up libhash-merge-perl (0.12-2) ... Setting up libsql-abstract-perl (1.72-1) ... Setting up libdbix-class-perl (0.08196-3) ... Setting up libclass-base-perl (0.05-1) ... Setting up libclass-data-inheritable-perl (0.08-1) ... Setting up libclass-makemethods-perl (1.01-4) ... Setting up libfile-sharedir-perl (1.00-0.1) ... Setting up libclass-method-modifiers-perl (1.09-1) ... Setting up librole-tiny-perl (1.001003-1) ... Setting up libstrictures-perl (1.003001-1) ... Setting up libmoo-perl (0.091011-1) ... Setting up libparse-recdescent-perl (1.967009+dfsg-1) ... Setting up libxml-writer-perl (0.615-1) ... Setting up libsql-translator-perl (0.11011-1) ... Setting up libdbd-sqlite3-perl (1.37-1) ... Setting up libdbicx-testdatabase-perl (0.04-1) ... Setting up libdbix-class-tree-nestedset-perl (0.10-1) ... Setting up libbio-chado-schema-perl (0.10010-1) ... Setting up libbit-vector-perl (7.2-1) ... Setting up libbsd-resource-perl (1.2904-1+b2) ... Setting up libclass-c3-xs-perl (0.13-1+b2) ... Setting up libclass-xsaccessor-perl (1.13-1) ... Setting up libcommon-sense-perl (3.6-1) ... Setting up libconfig-general-perl (2.50-1) ... Setting up libconfig-tiny-perl (2.14-1) ... Setting up libconvert-binary-c-perl (0.76-1+b2) ... Setting up libconvert-binhex-perl (1.119+pristine-3) ... Setting up libcrypt-ssleay-perl (0.58-1) ... Setting up libdate-calc-perl (6.3-1) ... Setting up libdate-calc-xs-perl (6.3-1) ... Setting up libdate-manip-perl (6.32-1) ... Setting up libdbd-mysql-perl (4.021-1+b1) ... Setting up libdbd-pg-perl (2.19.2-2+deb7u1) ... Setting up libpadwalker-perl (1.94-1) ... Setting up libdevel-argnames-perl (0.03-1) ... Setting up libdevel-partialdump-perl (0.15-1) ... Setting up libfcgi-perl (0.74-1+b1) ... Setting up libfont-afm-perl (1.20-1) ... Setting up libfreezethaw-perl (0.5001-1) ... Setting up libheap-perl (0.80-2) ... Setting up libgraph-perl (1:0.91-1) ... Setting up libio-pty-perl (1:1.08-1+b2) ... Setting up libipc-run-perl (0.92-1) ... Setting up libxml-parser-perl (2.41-1+b1) ... Setting up libxml-twig-perl (1:3.39-1) ... Setting up libxml-xpath-perl (1.13-7) ... Setting up libgraphviz-perl (2.10-1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libhtml-format-perl (2.10-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libsocket-perl (2.002-1) ... Setting up libio-socket-ip-perl (0.16-2) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up libjson-perl (2.53-1) ... Setting up libjson-xs-perl (2.320-1+b1) ... Setting up libmailtools-perl (2.09-1) ... Setting up libmath-derivative-perl (0.01-6) ... Setting up libmath-spline-perl (0.01-4) ... Setting up libmime-tools-perl (5.503-1) ... Setting up libmldbm-perl (2.04-1) ... Setting up libole-storage-lite-perl (0.19-1) ... Setting up libossp-uuid-perl (1.6.2-1.3) ... Setting up libpostscript-perl (0.06-2) ... Setting up libreadonly-perl (1.03-4) ... Setting up libreadonly-xs-perl (1.04-2+b3) ... Setting up libsoap-lite-perl (0.714-1) ... Setting up libsort-naturally-perl (1.02-1) ... Setting up libspreadsheet-writeexcel-perl (2.37-1) ... Setting up libunicode-map-perl (0.112-10+b3) ... Setting up libspreadsheet-parseexcel-perl (0.5800-1) ... Setting up libstatistics-descriptive-perl (3.0603-1) ... Setting up libsvg-perl (2.52-1) ... Setting up libtree-dagnode-perl (1.06-1) ... Setting up libsvg-graph-perl (0.02-2) ... Setting up libtemplate-perl (2.24-1) ... Setting up libtext-recordparser-perl (1.5.0-1) ... Setting up libtext-tabulardisplay-perl (1.33-1) ... Setting up libtie-ixhash-perl (1.21-2) ... Setting up libxml-perl (0.08-2) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up libxml-dom-perl (1.44-1) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up libxml-dom-xpath-perl (0.14-1) ... Setting up libxml-namespacesupport-perl (1.09-3) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-filter-buffertext-perl (1.01-5) ... Setting up libxml-libxml-perl (2.0001+dfsg-1+deb7u1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxslt-perl (1.77-1) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-sax-writer-perl (0.53-1) ... Setting up libxml-simple-perl (2.20-1) ... Setting up libyaml-libyaml-perl (0.38-3+deb7u3) ... Setting up libyaml-perl (0.81-1) ... Setting up perl-doc (5.14.2-21+deb7u3) ... Setting up perl-tk (1:804.030-1) ... Setting up xml-core (0.13+nmu2) ... Setting up libgd-gd2-perl (1:2.46-3+b1) ... Setting up libset-scalar-perl (1.25-1) ... Setting up liblwp-protocol-https-perl (6.03-1) ... Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 171 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for sgml-base ... 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', '-y', 'install', 'libbio-chado-schema-perl'] 0m50.7s INFO: Running scripts post_install 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_install_exceptions'] 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_install_exceptions'] 0m50.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 0m52.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 0m52.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpxCvIgX to jessie 0m52.2s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ jessie main 0m52.2s INFO: Running scripts pre_distupgrade 0m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_distupgrade_exceptions'] 0m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_distupgrade_exceptions'] 0m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m52.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m52.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', 'update'] 0m55.2s DUMP: Get:1 http://mirror-ubc.debian.org jessie Release.gpg [2434 B] Get:2 http://mirror-ubc.debian.org jessie Release [148 kB] Get:3 http://mirror-ubc.debian.org jessie/main amd64 Packages [6789 kB] Get:4 http://mirror-ubc.debian.org jessie/main Translation-en [4583 kB] Fetched 11.5 MB in 2s (5623 kB/s) Reading package lists... 0m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', 'update'] 0m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', '-yf', 'dist-upgrade'] 2m18.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gcc-4.7-base libgd-gd2-perl libgvc5 libperl5.14 The following NEW packages will be installed: acl apache2-bin apache2-data clustalo dialign-tx dialign-tx-data dmsetup fonts-dejavu-core gcc-4.9-base init iproute2 isc-dhcp-client isc-dhcp-common javascript-common libarchive-extract-perl libargtable2-0 libaudit-common libaudit1 libauthen-sasl-perl libb-hooks-op-check-perl libbareword-filehandles-perl libcap-ng0 libcap2-bin libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-tiny-perl libcpan-meta-perl libcrypt-rc4-perl libcryptsetup4 libcupsfilters1 libdata-section-perl libdb5.3 libdebconfclient0 libdevel-caller-perl libdevel-lexalias-perl libdevel-stacktrace-perl libdevmapper1.02.1 libdigest-perl-md5-perl libdist-checkconflicts-perl libdns-export100 libexporter-tiny-perl libffi6 libfile-slurp-tiny-perl libgcrypt20 libgd-perl libgd3 libgmp10 libgnutls-deb0-28 libgomp1 libgraphite2-3 libgvc6 libgvpr2 libharfbuzz0b libhogweed2 libhtml-tableextract-perl libimport-into-perl libindirect-perl libio-html-perl libio-sessiondata-perl libirs-export91 libisc-export95 libisccfg-export90 libjpeg62-turbo libjs-jquery libkmod2 liblexical-sealrequirehints-perl liblog-message-perl liblog-message-simple-perl liblua5.1-0 libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-conflicts-perl libmodule-signature-perl libmultidimensional-perl libnet-smtp-ssl-perl libnettle4 libpackage-constants-perl libpackage-variant-perl libpam-cap libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangox-1.0-0 libpangoxft-1.0-0 libperl5.20 libpod-latex-perl libpod-readme-perl libprocps3 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libregexp-common-perl libruby2.1 libsasl2-modules-db libsmartcols1 libsoftware-license-perl libsub-exporter-progressive-perl libsystemd0 libtasn1-6 libterm-ui-perl libtext-autoformat-perl libtext-reform-perl libtext-soundex-perl libtext-template-perl libtiff5 libtype-tiny-perl libtype-tiny-xs-perl libudev1 libvpx1 libxmlrpc-lite-perl libxtables10 mustang ncbi-blast+ poa prank probalign proda python python-minimal python2.7 python2.7-minimal rename ruby2.1 rubygems-integration startpar systemd systemd-sysv udev wise-data xdg-user-dirs The following packages will be upgraded: amap-align apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common apt base-files base-passwd bash bedtools bioperl bioperl-run blast2 bowtie bsdutils bwa ca-certificates clustalw coreutils dash dbus debconf debconf-i18n debian-archive-keyring debianutils dialign diffutils dpkg e2fslibs e2fsprogs emboss emboss-data emboss-lib file findutils fontconfig fontconfig-config fonts-droid fonts-liberation ghostscript gnupg gpgv graphviz grep gzip hmmer hostname ifupdown infernal initscripts iproute krb5-locales libace-perl libacl1 libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libapt-pkg4.12 libarray-compare-perl libattr1 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libbio-asn1-entrezgene-perl libbio-chado-schema-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libblkid1 libbsd-resource-perl libbsd0 libbz2-1.0 libc-bin libc6 libcache-cache-perl libcairo2 libcap2 libclass-accessor-grouped-perl libclass-c3-perl libclass-c3-xs-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcomerr2 libcommon-sense-perl libconfig-any-perl libconfig-general-perl libconfig-tiny-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-ssleay-perl libcups2 libcupsimage2 libdata-compare-perl libdata-dumper-concise-perl libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbicx-testdatabase-perl libdbix-class-perl libdbus-1-3 libdevel-globaldestruction-perl libdevel-partialdump-perl libdevel-symdump-perl liberror-perl libeval-closure-perl libexpat1 libfcgi-perl libfile-sharedir-perl libfontconfig1 libfreetype6 libgcc1 libgdbm3 libgetopt-long-descriptive-perl libgfortran3 libglib2.0-0 libglib2.0-data libgpg-error0 libgpm2 libgraph-perl libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libhash-merge-perl libhpdf-2.2.1 libhtml-format-perl libhtml-parser-perl libhtml-tree-perl libhttp-cookies-perl libhttp-message-perl libice6 libidn11 libijs-0.35 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libipc-sharelite-perl libjasper1 libjbig0 libjbig2dec0 libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblist-moreutils-perl liblocale-gettext-perl libltdl7 liblwp-protocol-https-perl liblzma5 libmagic1 libmailtools-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-find-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoose-perl libmount1 libmro-compat-perl libmysqlclient18 libnamespace-clean-perl libncbi6 libncurses5 libncursesw5 libnet-http-perl libnet-ssleay-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-stash-perl libpackage-stash-xs-perl libpadwalker-perl libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libpath-class-perl libpathplan4 libpcre3 libpixman-1-0 libpng12-0 libpq5 libquadmath0 libreadline6 libreadonly-perl libreadonly-xs-perl librole-tiny-perl libsasl2-2 libsasl2-modules libselinux1 libsemanage-common libsemanage1 libsepol1 libset-scalar-perl libslang2 libsm6 libsoap-lite-perl libsocket-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsql-abstract-perl libsql-translator-perl libsqlite3-0 libss2 libssl1.0.0 libstatistics-descriptive-perl libstdc++6 libstrictures-perl libsub-exporter-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-perl libswitch-perl libsystemd-login0 libtask-weaken-perl libtemplate-perl libtext-charwidth-perl libtext-iconv-perl libtext-recordparser-perl libtext-tabulardisplay-perl libthai-data libthai0 libtie-ixhash-perl libtimedate-perl libtinfo5 libtree-dagnode-perl libtry-tiny-perl libunicode-map-perl liburi-perl libusb-0.1-4 libustr-1.0-1 libuuid1 libvariable-magic-perl libwww-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-writer-perl libxml-twig-perl libxml-writer-perl libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-syck-perl login lsb-base lynx lynx-cur mafft mime-support mount multiarch-support mysql-common ncbi-data ncurses-base ncurses-bin netbase openssl passwd perl perl-base perl-doc perl-modules perl-tk phyml poppler-data primer3 procps psmisc readline-common ruby samtools sed sensible-utils shared-mime-info sim4 ssl-cert sysv-rc sysvinit sysvinit-utils t-coffee tar tigr-glimmer tm-align ttf-dejavu-core ttf-liberation tzdata ucf util-linux wise x11-common xz-utils zlib1g 348 upgraded, 133 newly installed, 4 to remove and 0 not upgraded. Need to get 217 MB of archives. After this operation, 314 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ jessie/main libc6 amd64 2.19-18+deb8u10 [4665 kB] Get:2 http://mirror-ubc.debian.org/debian/ jessie/main libc-bin amd64 2.19-18+deb8u10 [1281 kB] Get:3 http://mirror-ubc.debian.org/debian/ jessie/main gcc-4.9-base amd64 4.9.2-10 [160 kB] Get:4 http://mirror-ubc.debian.org/debian/ jessie/main libstdc++6 amd64 4.9.2-10 [273 kB] Get:5 http://mirror-ubc.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10 [255 kB] Get:6 http://mirror-ubc.debian.org/debian/ jessie/main libgcc1 amd64 1:4.9.2-10 [39.5 kB] Get:7 http://mirror-ubc.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10 [129 kB] Get:8 http://mirror-ubc.debian.org/debian/ jessie/main libcdt5 amd64 2.38.0-7 [62.7 kB] Get:9 http://mirror-ubc.debian.org/debian/ jessie/main libcgraph6 amd64 2.38.0-7 [85.2 kB] Get:10 http://mirror-ubc.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:11 http://mirror-ubc.debian.org/debian/ jessie/main zlib1g amd64 1:1.2.8.dfsg-2+b1 [88.8 kB] Get:12 http://mirror-ubc.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:13 http://mirror-ubc.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:14 http://mirror-ubc.debian.org/debian/ jessie/main libpcre3 amd64 2:8.35-3.3+deb8u4 [322 kB] Get:15 http://mirror-ubc.debian.org/debian/ jessie/main libselinux1 amd64 2.3-2 [89.8 kB] Get:16 http://mirror-ubc.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:17 http://mirror-ubc.debian.org/debian/ jessie/main dpkg amd64 1.17.27 [2994 kB] Get:18 http://mirror-ubc.debian.org/debian/ jessie/main perl-doc all 5.20.2-3+deb8u9 [7347 kB] Get:19 http://mirror-ubc.debian.org/debian/ jessie/main libclass-xsaccessor-perl amd64 1.19-2+b4 [39.0 kB] Get:20 http://mirror-ubc.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u9 [2641 kB] Get:21 http://mirror-ubc.debian.org/debian/ jessie/main libcommon-sense-perl amd64 3.73-2+b3 [23.7 kB] Get:22 http://mirror-ubc.debian.org/debian/ jessie/main libio-socket-ip-perl all 0.32-1 [28.1 kB] Get:23 http://mirror-ubc.debian.org/debian/ jessie/main libsocket-perl amd64 2.016-1 [37.2 kB] Get:24 http://mirror-ubc.debian.org/debian/ jessie/main libapr1 amd64 1.5.1-3 [95.3 kB] Get:25 http://mirror-ubc.debian.org/debian/ jessie/main libdb5.3 amd64 5.3.28-9+deb8u1 [680 kB] Get:26 http://mirror-ubc.debian.org/debian/ jessie/main libaprutil1-ldap amd64 1.5.4-1 [17.2 kB] Get:27 http://mirror-ubc.debian.org/debian/ jessie/main libaprutil1-dbd-sqlite3 amd64 1.5.4-1 [19.1 kB] Get:28 http://mirror-ubc.debian.org/debian/ jessie/main libaprutil1 amd64 1.5.4-1 [86.2 kB] Get:29 http://mirror-ubc.debian.org/debian/ jessie/main liblua5.1-0 amd64 5.1.5-7.1 [108 kB] Get:30 http://mirror-ubc.debian.org/debian/ jessie/main apache2-utils amd64 2.4.10-10+deb8u11 [195 kB] Get:31 http://mirror-ubc.debian.org/debian/ jessie/main libapache2-mod-perl2 amd64 2.0.9~1624218-2+deb8u2 [903 kB] Get:32 http://mirror-ubc.debian.org/debian/ jessie/main libapache2-reload-perl all 0.12-3 [17.3 kB] Get:33 http://mirror-ubc.debian.org/debian/ jessie/main apache2.2-common amd64 2.4.10-10+deb8u11 [125 kB] Get:34 http://mirror-ubc.debian.org/debian/ jessie/main apache2-data all 2.4.10-10+deb8u11 [163 kB] Get:35 http://mirror-ubc.debian.org/debian/ jessie/main apache2 amd64 2.4.10-10+deb8u11 [208 kB] Get:36 http://mirror-ubc.debian.org/debian/ jessie/main apache2-mpm-worker amd64 2.4.10-10+deb8u11 [1500 B] Get:37 http://mirror-ubc.debian.org/debian/ jessie/main apache2.2-bin amd64 2.4.10-10+deb8u11 [1692 B] Get:38 http://mirror-ubc.debian.org/debian/ jessie/main apache2-bin amd64 2.4.10-10+deb8u11 [1038 kB] Get:39 http://mirror-ubc.debian.org/debian/ jessie/main libperl5.20 amd64 5.20.2-3+deb8u9 [1352 B] Get:40 http://mirror-ubc.debian.org/debian/ jessie/main libtext-charwidth-perl amd64 0.04-7+b3 [10.7 kB] Get:41 http://mirror-ubc.debian.org/debian/ jessie/main libpackage-stash-xs-perl amd64 0.28-2+b1 [18.8 kB] Get:42 http://mirror-ubc.debian.org/debian/ jessie/main liblist-moreutils-perl amd64 0.33-2+b1 [44.4 kB] Get:43 http://mirror-ubc.debian.org/debian/ jessie/main libclone-perl amd64 0.37-1+b1 [14.2 kB] Get:44 http://mirror-ubc.debian.org/debian/ jessie/main libpadwalker-perl amd64 1.98-1+b1 [20.7 kB] Get:45 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-libyaml-perl amd64 0.41-6 [67.0 kB] Get:46 http://mirror-ubc.debian.org/debian/ jessie/main libbit-vector-perl amd64 7.3-1+b2 [146 kB] Get:47 http://mirror-ubc.debian.org/debian/ jessie/main libdate-calc-xs-perl amd64 6.3-2 [54.0 kB] Get:48 http://mirror-ubc.debian.org/debian/ jessie/main libclass-load-perl all 0.22-1 [15.8 kB] Get:49 http://mirror-ubc.debian.org/debian/ jessie/main libclass-load-xs-perl amd64 0.08-1+b1 [15.0 kB] Get:50 http://mirror-ubc.debian.org/debian/ jessie/main libsub-name-perl amd64 0.12-1 [12.1 kB] Get:51 http://mirror-ubc.debian.org/debian/ jessie/main libio-pty-perl amd64 1:1.08-1+b4 [35.8 kB] Get:52 http://mirror-ubc.debian.org/debian/ jessie/main libipc-sharelite-perl amd64 0.17-3+b2 [24.9 kB] Get:53 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:54 http://mirror-ubc.debian.org/debian/ jessie/main libdbd-sqlite3-perl amd64 1.44-1 [156 kB] Get:55 http://mirror-ubc.debian.org/debian/ jessie/main libbsd-resource-perl amd64 1.2907-1+b2 [33.1 kB] Get:56 http://mirror-ubc.debian.org/debian/ jessie/main perl-base amd64 5.20.2-3+deb8u9 [1226 kB] Get:57 http://mirror-ubc.debian.org/debian/ jessie/main liblocale-gettext-perl amd64 1.05-8+b1 [19.0 kB] Get:58 http://mirror-ubc.debian.org/debian/ jessie/main libreadonly-xs-perl amd64 1.05-1+b1 [10.4 kB] Get:59 http://mirror-ubc.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:60 http://mirror-ubc.debian.org/debian/ jessie/main libsub-identify-perl amd64 0.08-1 [11.2 kB] Get:61 http://mirror-ubc.debian.org/debian/ jessie/main libjson-xs-perl amd64 2.340-1+b2 [85.9 kB] Get:62 http://mirror-ubc.debian.org/debian/ jessie/main libxml-libxslt-perl amd64 1.92-1+b1 [47.7 kB] Get:63 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-diff-xs-perl amd64 0.04-3+b1 [12.2 kB] Get:64 http://mirror-ubc.debian.org/debian/ jessie/main ttf-dejavu-core all 2.34-1 [30.7 kB] Get:65 http://mirror-ubc.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:66 http://mirror-ubc.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:67 http://mirror-ubc.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:68 http://mirror-ubc.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:69 http://mirror-ubc.debian.org/debian/ jessie/main perl-tk amd64 1:804.032-3+b3 [2031 kB] Get:70 http://mirror-ubc.debian.org/debian/ jessie/main libdbd-mysql-perl amd64 4.028-2+deb8u2 [119 kB] Get:71 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-syck-perl amd64 1.27-2+b2 [80.5 kB] Get:72 http://mirror-ubc.debian.org/debian/ jessie/main libtext-iconv-perl amd64 1.7-5+b2 [16.2 kB] Get:73 http://mirror-ubc.debian.org/debian/ jessie/main libparams-validate-perl amd64 1.13-1+b1 [65.2 kB] Get:74 http://mirror-ubc.debian.org/debian/ jessie/main libcrypt-ssleay-perl amd64 0.58-1+b2 [45.8 kB] Get:75 http://mirror-ubc.debian.org/debian/ jessie/main libdbd-pg-perl amd64 3.4.2-1 [203 kB] Get:76 http://mirror-ubc.debian.org/debian/ jessie/main libtemplate-perl amd64 2.24-1.2+b1 [605 kB] Get:77 http://mirror-ubc.debian.org/debian/ jessie/main libclass-c3-xs-perl amd64 0.13-2+b1 [15.2 kB] Get:78 http://mirror-ubc.debian.org/debian/ jessie/main libconvert-binary-c-perl amd64 0.76-3+b2 [274 kB] Get:79 http://mirror-ubc.debian.org/debian/ jessie/main libossp-uuid-perl amd64 1.6.2-1.5+b1 [30.2 kB] Get:80 http://mirror-ubc.debian.org/debian/ jessie/main libparams-classify-perl amd64 0.013-4+b2 [24.1 kB] Get:81 http://mirror-ubc.debian.org/debian/ jessie/main libunicode-map-perl amd64 0.112-11+b1 [146 kB] Get:82 http://mirror-ubc.debian.org/debian/ jessie/main libace-perl amd64 1.92-3+b1 [310 kB] Get:83 http://mirror-ubc.debian.org/debian/ jessie/main libvariable-magic-perl amd64 0.55-1 [42.5 kB] Get:84 http://mirror-ubc.debian.org/debian/ jessie/main libfcgi-perl amd64 0.77-1+deb8u1 [39.0 kB] Get:85 http://mirror-ubc.debian.org/debian/ jessie/main libxml-parser-perl amd64 2.41-3 [215 kB] Get:86 http://mirror-ubc.debian.org/debian/ jessie/main libdbi-perl amd64 1.631-3+b1 [816 kB] Get:87 http://mirror-ubc.debian.org/debian/ jessie/main libparams-util-perl amd64 1.07-2+b1 [23.5 kB] Get:88 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-stacktrace-perl all 1.3400-1 [23.9 kB] Get:89 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-runtime-perl all 0.014-1 [17.9 kB] Get:90 http://mirror-ubc.debian.org/debian/ jessie/main libdist-checkconflicts-perl all 0.11-1 [10.8 kB] Get:91 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-runtime-conflicts-perl all 0.001-1 [6846 B] Get:92 http://mirror-ubc.debian.org/debian/ jessie/main libmoose-perl amd64 2.1213-1 [880 kB] Get:93 http://mirror-ubc.debian.org/debian/ jessie/main libxml-libxml-perl amd64 2.0116+dfsg-1+deb8u2 [365 kB] Get:94 http://mirror-ubc.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u9 [2553 kB] Get:95 http://mirror-ubc.debian.org/debian/ jessie/main libbz2-1.0 amd64 1.0.6-7+b3 [43.5 kB] Get:96 http://mirror-ubc.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:97 http://mirror-ubc.debian.org/debian/ jessie/main iproute all 1:3.16.0-2 [15.5 kB] Get:98 http://mirror-ubc.debian.org/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB] Get:99 http://mirror-ubc.debian.org/debian/ jessie/main startpar amd64 0.59-3 [21.8 kB] Get:100 http://mirror-ubc.debian.org/debian/ jessie/main sysvinit-utils amd64 2.88dsf-59 [84.4 kB] Get:101 http://mirror-ubc.debian.org/debian/ jessie/main base-files amd64 8+deb8u10 [78.2 kB] Get:102 http://mirror-ubc.debian.org/debian/ jessie/main sysv-rc all 2.88dsf-59 [82.8 kB] Get:103 http://mirror-ubc.debian.org/debian/ jessie/main libaudit-common all 1:2.4-1 [13.5 kB] Get:104 http://mirror-ubc.debian.org/debian/ jessie/main libaudit1 amd64 1:2.4-1+b1 [44.7 kB] Get:105 http://mirror-ubc.debian.org/debian/ jessie/main libpam0g amd64 1.1.8-3.1+deb8u2+b1 [126 kB] Get:106 http://mirror-ubc.debian.org/debian/ jessie/main libsemanage-common all 2.3-1 [24.6 kB] Get:107 http://mirror-ubc.debian.org/debian/ jessie/main libsemanage1 amd64 2.3-1+b1 [90.2 kB] Get:108 http://mirror-ubc.debian.org/debian/ jessie/main libsepol1 amd64 2.3-2 [127 kB] Get:109 http://mirror-ubc.debian.org/debian/ jessie/main libustr-1.0-1 amd64 1.0.4-3+b2 [79.6 kB] Get:110 http://mirror-ubc.debian.org/debian/ jessie/main libpam-modules-bin amd64 1.1.8-3.1+deb8u2+b1 [104 kB] Get:111 http://mirror-ubc.debian.org/debian/ jessie/main libpam-modules amd64 1.1.8-3.1+deb8u2+b1 [307 kB] Get:112 http://mirror-ubc.debian.org/debian/ jessie/main sensible-utils all 0.0.9 [11.3 kB] Get:113 http://mirror-ubc.debian.org/debian/ jessie/main debianutils amd64 4.4+b1 [99.1 kB] Get:114 http://mirror-ubc.debian.org/debian/ jessie/main passwd amd64 1:4.2-3+deb8u4 [971 kB] Get:115 http://mirror-ubc.debian.org/debian/ jessie/main libuuid1 amd64 2.25.2-6 [64.7 kB] Get:116 http://mirror-ubc.debian.org/debian/ jessie/main libblkid1 amd64 2.25.2-6 [156 kB] Get:117 http://mirror-ubc.debian.org/debian/ jessie/main libmount1 amd64 2.25.2-6 [164 kB] Get:118 http://mirror-ubc.debian.org/debian/ jessie/main libsmartcols1 amd64 2.25.2-6 [110 kB] Get:119 http://mirror-ubc.debian.org/debian/ jessie/main mount amd64 2.25.2-6 [168 kB] Get:120 http://mirror-ubc.debian.org/debian/ jessie/main lsb-base all 4.1+Debian13+nmu1 [26.7 kB] Get:121 http://mirror-ubc.debian.org/debian/ jessie/main coreutils amd64 8.23-4 [2727 kB] Get:122 http://mirror-ubc.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:123 http://mirror-ubc.debian.org/debian/ jessie/main ifupdown amd64 0.7.53.1 [67.2 kB] Get:124 http://mirror-ubc.debian.org/debian/ jessie/main initscripts amd64 2.88dsf-59 [87.2 kB] Get:125 http://mirror-ubc.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:126 http://mirror-ubc.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:127 http://mirror-ubc.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:128 http://mirror-ubc.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:129 http://mirror-ubc.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:130 http://mirror-ubc.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:131 http://mirror-ubc.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:132 http://mirror-ubc.debian.org/debian/ jessie/main libsasl2-modules amd64 2.1.26.dfsg1-13+deb8u1 [101 kB] Get:133 http://mirror-ubc.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:134 http://mirror-ubc.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:135 http://mirror-ubc.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u7 [1046 kB] Get:136 http://mirror-ubc.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u3 [218 kB] Get:137 http://mirror-ubc.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:138 http://mirror-ubc.debian.org/debian/ jessie/main libprocps3 amd64 2:3.3.9-9 [56.3 kB] Get:139 http://mirror-ubc.debian.org/debian/ jessie/main libtinfo5 amd64 5.9+20140913-1+deb8u2 [282 kB] Get:140 http://mirror-ubc.debian.org/debian/ jessie/main libncurses5 amd64 5.9+20140913-1+deb8u2 [96.6 kB] Get:141 http://mirror-ubc.debian.org/debian/ jessie/main libncursesw5 amd64 5.9+20140913-1+deb8u2 [123 kB] Get:142 http://mirror-ubc.debian.org/debian/ jessie/main procps amd64 2:3.3.9-9 [236 kB] Get:143 http://mirror-ubc.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:144 http://mirror-ubc.debian.org/debian/ jessie/main liblzma5 amd64 5.1.1alpha+20120614-2+b3 [194 kB] Get:145 http://mirror-ubc.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u5 [803 kB] Get:146 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-symdump-perl all 2.12-1 [17.1 kB] Get:147 http://mirror-ubc.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:148 http://mirror-ubc.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:149 http://mirror-ubc.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:150 http://mirror-ubc.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:151 http://mirror-ubc.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:152 http://mirror-ubc.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:153 http://mirror-ubc.debian.org/debian/ jessie/main libsoap-lite-perl all 1.11-1 [272 kB] Get:154 http://mirror-ubc.debian.org/debian/ jessie/main libio-sessiondata-perl all 1.03-1 [5782 B] Get:155 http://mirror-ubc.debian.org/debian/ jessie/main libclass-inspector-perl all 1.28-1 [20.8 kB] Get:156 http://mirror-ubc.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:157 http://mirror-ubc.debian.org/debian/ jessie/main libconvert-binhex-perl all 1.123-2 [30.2 kB] Get:158 http://mirror-ubc.debian.org/debian/ jessie/main libnet-smtp-ssl-perl all 1.01-3 [5996 B] Get:159 http://mirror-ubc.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:160 http://mirror-ubc.debian.org/debian/ jessie/main libmailtools-perl all 2.13-1 [96.6 kB] Get:161 http://mirror-ubc.debian.org/debian/ jessie/main libmime-tools-perl all 5.505-1 [226 kB] Get:162 http://mirror-ubc.debian.org/debian/ jessie/main libossp-uuid16 amd64 1.6.2-1.5+b1 [38.0 kB] Get:163 http://mirror-ubc.debian.org/debian/ jessie/main libtask-weaken-perl all 1.04-1 [7990 B] Get:164 http://mirror-ubc.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u7 [665 kB] Get:165 http://mirror-ubc.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:166 http://mirror-ubc.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:167 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:168 http://mirror-ubc.debian.org/debian/ jessie/main libdate-calc-perl all 6.3-2 [194 kB] Get:169 http://mirror-ubc.debian.org/debian/ jessie/main libsub-install-perl all 0.928-1 [11.4 kB] Get:170 http://mirror-ubc.debian.org/debian/ jessie/main libdata-optlist-perl all 0.109-1 [10.6 kB] Get:171 http://mirror-ubc.debian.org/debian/ jessie/main libtry-tiny-perl all 0.22-1 [19.6 kB] Get:172 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:173 http://mirror-ubc.debian.org/debian/ jessie/main libsub-exporter-progressive-perl all 0.001011-1 [7748 B] Get:174 http://mirror-ubc.debian.org/debian/ jessie/main libb-hooks-endofscope-perl all 0.13-1 [15.4 kB] Get:175 http://mirror-ubc.debian.org/debian/ jessie/main libpackage-stash-perl all 0.37-1 [20.8 kB] Get:176 http://mirror-ubc.debian.org/debian/ jessie/main libnamespace-clean-perl all 0.25-1 [15.4 kB] Get:177 http://mirror-ubc.debian.org/debian/ jessie/main libgpg-error0 amd64 1.17-3 [94.9 kB] Get:178 http://mirror-ubc.debian.org/debian/ jessie/main libgcrypt20 amd64 1.6.3-2+deb8u4 [392 kB] Get:179 http://mirror-ubc.debian.org/debian/ jessie/main libxslt1.1 amd64 1.1.28-2+deb8u3 [232 kB] Get:180 http://mirror-ubc.debian.org/debian/ jessie/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:181 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-diff-perl all 1.19.02-3 [51.7 kB] Get:182 http://mirror-ubc.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:183 http://mirror-ubc.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:184 http://mirror-ubc.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:185 http://mirror-ubc.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:186 http://mirror-ubc.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:187 http://mirror-ubc.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:188 http://mirror-ubc.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:189 http://mirror-ubc.debian.org/debian/ jessie/main mysql-common all 5.5.58-0+deb8u1 [78.6 kB] Get:190 http://mirror-ubc.debian.org/debian/ jessie/main libmysqlclient18 amd64 5.5.58-0+deb8u1 [674 kB] Get:191 http://mirror-ubc.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:192 http://mirror-ubc.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:193 http://mirror-ubc.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:194 http://mirror-ubc.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:195 http://mirror-ubc.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:196 http://mirror-ubc.debian.org/debian/ jessie/main libcomerr2 amd64 1.42.12-2+b1 [60.7 kB] Get:197 http://mirror-ubc.debian.org/debian/ jessie/main libpq5 amd64 9.4.15-0+deb8u1 [127 kB] Get:198 http://mirror-ubc.debian.org/debian/ jessie/main liberror-perl all 0.17-1.1 [22.4 kB] Get:199 http://mirror-ubc.debian.org/debian/ jessie/main libcache-cache-perl all 1.07-2 [76.2 kB] Get:200 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-globaldestruction-perl all 0.13-1 [8676 B] Get:201 http://mirror-ubc.debian.org/debian/ jessie/main libsub-exporter-perl all 0.986-1 [49.9 kB] Get:202 http://mirror-ubc.debian.org/debian/ jessie/main libeval-closure-perl all 0.11-1 [11.6 kB] Get:203 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-c3-perl all 0.09-1 [11.9 kB] Get:204 http://mirror-ubc.debian.org/debian/ jessie/main libclass-c3-perl all 0.26-1 [22.9 kB] Get:205 http://mirror-ubc.debian.org/debian/ jessie/main libmro-compat-perl all 0.12-1 [13.2 kB] Get:206 http://mirror-ubc.debian.org/debian/ jessie/main debconf all 1.5.56+deb8u1 [167 kB] Get:207 http://mirror-ubc.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] Get:208 http://mirror-ubc.debian.org/debian/ jessie/main fonts-liberation all 1.07.4-1 [835 kB] Get:209 http://mirror-ubc.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:210 http://mirror-ubc.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u4 [221 kB] Get:211 http://mirror-ubc.debian.org/debian/ jessie/main libvpx1 amd64 1.3.0-3 [599 kB] Get:212 http://mirror-ubc.debian.org/debian/ jessie/main libxpm4 amd64 1:3.5.12-0+deb8u1 [49.2 kB] Get:213 http://mirror-ubc.debian.org/debian/ jessie/main libgd3 amd64 2.1.0-5+deb8u11 [148 kB] Get:214 http://mirror-ubc.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:215 http://mirror-ubc.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:216 http://mirror-ubc.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:217 http://mirror-ubc.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:218 http://mirror-ubc.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:219 http://mirror-ubc.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:220 http://mirror-ubc.debian.org/debian/ jessie/main libltdl7 amd64 2.4.2-1.11+b1 [45.4 kB] Get:221 http://mirror-ubc.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:222 http://mirror-ubc.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:223 http://mirror-ubc.debian.org/debian/ jessie/main libpango1.0-0 amd64 1.36.8-3 [183 kB] Get:224 http://mirror-ubc.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:225 http://mirror-ubc.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:226 http://mirror-ubc.debian.org/debian/ jessie/main libpangox-1.0-0 amd64 0.0.2-5 [42.0 kB] Get:227 http://mirror-ubc.debian.org/debian/ jessie/main libpangoxft-1.0-0 amd64 1.36.8-3 [195 kB] Get:228 http://mirror-ubc.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:229 http://mirror-ubc.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:230 http://mirror-ubc.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:231 http://mirror-ubc.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:232 http://mirror-ubc.debian.org/debian/ jessie/main libpathplan4 amd64 2.38.0-7 [66.0 kB] Get:233 http://mirror-ubc.debian.org/debian/ jessie/main libxdot4 amd64 2.38.0-7 [58.7 kB] Get:234 http://mirror-ubc.debian.org/debian/ jessie/main graphviz amd64 2.38.0-7 [717 kB] Get:235 http://mirror-ubc.debian.org/debian/ jessie/main libgvc6 amd64 2.38.0-7 [637 kB] Get:236 http://mirror-ubc.debian.org/debian/ jessie/main libgvpr2 amd64 2.38.0-7 [212 kB] Get:237 http://mirror-ubc.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:238 http://mirror-ubc.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:239 http://mirror-ubc.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:240 http://mirror-ubc.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:241 http://mirror-ubc.debian.org/debian/ jessie/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:242 http://mirror-ubc.debian.org/debian/ jessie/main libxaw7 amd64 2:1.0.12-2+b1 [199 kB] Get:243 http://mirror-ubc.debian.org/debian/ jessie/main bash amd64 4.3-11+deb8u1 [1172 kB] Get:244 http://mirror-ubc.debian.org/debian/ jessie/main libsystemd0 amd64 215-17+deb8u7 [89.4 kB] Get:245 http://mirror-ubc.debian.org/debian/ jessie/main bsdutils amd64 1:2.25.2-6 [94.0 kB] Get:246 http://mirror-ubc.debian.org/debian/ jessie/main dash amd64 0.5.7-4+b1 [109 kB] Get:247 http://mirror-ubc.debian.org/debian/ jessie/main diffutils amd64 1:3.3-1+b1 [267 kB] Get:248 http://mirror-ubc.debian.org/debian/ jessie/main e2fslibs amd64 1.42.12-2+b1 [186 kB] Get:249 http://mirror-ubc.debian.org/debian/ jessie/main e2fsprogs amd64 1.42.12-2+b1 [750 kB] Get:250 http://mirror-ubc.debian.org/debian/ jessie/main findutils amd64 4.4.2-9+b1 [485 kB] Get:251 http://mirror-ubc.debian.org/debian/ jessie/main grep amd64 2.20-4.1 [325 kB] Get:252 http://mirror-ubc.debian.org/debian/ jessie/main gzip amd64 1.6-4 [111 kB] Get:253 http://mirror-ubc.debian.org/debian/ jessie/main hostname amd64 3.15 [13.9 kB] Get:254 http://mirror-ubc.debian.org/debian/ jessie/main libudev1 amd64 215-17+deb8u7 [57.8 kB] Get:255 http://mirror-ubc.debian.org/debian/ jessie/main tzdata all 2017c-0+deb8u1 [232 kB] Get:256 http://mirror-ubc.debian.org/debian/ jessie/main util-linux amd64 2.25.2-6 [845 kB] Get:257 http://mirror-ubc.debian.org/debian/ jessie/main libdevmapper1.02.1 amd64 2:1.02.90-2.2+deb8u1 [145 kB] Get:258 http://mirror-ubc.debian.org/debian/ jessie/main dmsetup amd64 2:1.02.90-2.2+deb8u1 [69.1 kB] Get:259 http://mirror-ubc.debian.org/debian/ jessie/main libcryptsetup4 amd64 2:1.6.6-5 [103 kB] Get:260 http://mirror-ubc.debian.org/debian/ jessie/main libkmod2 amd64 18-3 [46.2 kB] Get:261 http://mirror-ubc.debian.org/debian/ jessie/main libattr1 amd64 1:2.4.47-2 [18.3 kB] Get:262 http://mirror-ubc.debian.org/debian/ jessie/main libacl1 amd64 2.2.52-2 [27.9 kB] Get:263 http://mirror-ubc.debian.org/debian/ jessie/main udev amd64 215-17+deb8u7 [876 kB] Get:264 http://mirror-ubc.debian.org/debian/ jessie/main acl amd64 2.2.52-2 [58.4 kB] Get:265 http://mirror-ubc.debian.org/debian/ jessie/main libcap2 amd64 1:2.24-8 [15.3 kB] Get:266 http://mirror-ubc.debian.org/debian/ jessie/main libcap2-bin amd64 1:2.24-8 [25.4 kB] Get:267 http://mirror-ubc.debian.org/debian/ jessie/main systemd amd64 215-17+deb8u7 [2545 kB] Get:268 http://mirror-ubc.debian.org/debian/ jessie/main systemd-sysv amd64 215-17+deb8u7 [36.7 kB] Get:269 http://mirror-ubc.debian.org/debian/ jessie/main init amd64 1.22 [4674 B] Get:270 http://mirror-ubc.debian.org/debian/ jessie/main login amd64 1:4.2-3+deb8u4 [722 kB] Get:271 http://mirror-ubc.debian.org/debian/ jessie/main ncurses-bin amd64 5.9+20140913-1+deb8u2 [347 kB] Get:272 http://mirror-ubc.debian.org/debian/ jessie/main sed amd64 4.2.2-4+deb8u1 [243 kB] Get:273 http://mirror-ubc.debian.org/debian/ jessie/main tar amd64 1.27.1-2+deb8u1 [676 kB] Get:274 http://mirror-ubc.debian.org/debian/ jessie/main sysvinit amd64 2.88dsf-59 [99.9 kB] Get:275 http://mirror-ubc.debian.org/debian/ jessie/main libapt-pkg4.12 amd64 1.0.9.8.4 [792 kB] Get:276 http://mirror-ubc.debian.org/debian/ jessie/main gpgv amd64 1.4.18-7+deb8u4 [209 kB] Get:277 http://mirror-ubc.debian.org/debian/ jessie/main debian-archive-keyring all 2017.5~deb8u1 [56.7 kB] Get:278 http://mirror-ubc.debian.org/debian/ jessie/main readline-common all 6.3-8 [57.7 kB] Get:279 http://mirror-ubc.debian.org/debian/ jessie/main libreadline6 amd64 6.3-8+b3 [143 kB] Get:280 http://mirror-ubc.debian.org/debian/ jessie/main libusb-0.1-4 amd64 2:0.1.12-25 [21.9 kB] Get:281 http://mirror-ubc.debian.org/debian/ jessie/main gnupg amd64 1.4.18-7+deb8u4 [1149 kB] Get:282 http://mirror-ubc.debian.org/debian/ jessie/main apt amd64 1.0.9.8.4 [1109 kB] Get:283 http://mirror-ubc.debian.org/debian/ jessie/main libdebconfclient0 amd64 0.192 [46.2 kB] Get:284 http://mirror-ubc.debian.org/debian/ jessie/main base-passwd amd64 3.5.37 [64.5 kB] Get:285 http://mirror-ubc.debian.org/debian/ jessie/main ncurses-base all 5.9+20140913-1+deb8u2 [222 kB] Get:286 http://mirror-ubc.debian.org/debian/ jessie/main libslang2 amd64 2.3.0-2 [491 kB] Get:287 http://mirror-ubc.debian.org/debian/ jessie/main libss2 amd64 1.42.12-2+b1 [65.0 kB] Get:288 http://mirror-ubc.debian.org/debian/ jessie/main libgpm2 amd64 1.20.4-6.1+b2 [34.0 kB] Get:289 http://mirror-ubc.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:290 http://mirror-ubc.debian.org/debian/ jessie/main file amd64 1:5.22+15-2+deb8u3 [60.4 kB] Get:291 http://mirror-ubc.debian.org/debian/ jessie/main libmagic1 amd64 1:5.22+15-2+deb8u3 [250 kB] Get:292 http://mirror-ubc.debian.org/debian/ jessie/main libpython2.7-minimal amd64 2.7.9-2+deb8u1 [378 kB] Get:293 http://mirror-ubc.debian.org/debian/ jessie/main python2.7-minimal amd64 2.7.9-2+deb8u1 [1401 kB] Get:294 http://mirror-ubc.debian.org/debian/ jessie/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:295 http://mirror-ubc.debian.org/debian/ jessie/main libpython2.7-stdlib amd64 2.7.9-2+deb8u1 [1847 kB] Get:296 http://mirror-ubc.debian.org/debian/ jessie/main python2.7 amd64 2.7.9-2+deb8u1 [252 kB] Get:297 http://mirror-ubc.debian.org/debian/ jessie/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:298 http://mirror-ubc.debian.org/debian/ jessie/main python amd64 2.7.9-1 [151 kB] Get:299 http://mirror-ubc.debian.org/debian/ jessie/main fonts-droid all 1:4.4.4r2-6 [3729 kB] Get:300 http://mirror-ubc.debian.org/debian/ jessie/main libavahi-common-data amd64 0.6.31-5 [98.6 kB] Get:301 http://mirror-ubc.debian.org/debian/ jessie/main libavahi-common3 amd64 0.6.31-5 [51.1 kB] Get:302 http://mirror-ubc.debian.org/debian/ jessie/main libdbus-1-3 amd64 1.8.22-0+deb8u1 [170 kB] Get:303 http://mirror-ubc.debian.org/debian/ jessie/main libavahi-client3 amd64 0.6.31-5 [54.4 kB] Get:304 http://mirror-ubc.debian.org/debian/ jessie/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:305 http://mirror-ubc.debian.org/debian/ jessie/main libcap-ng0 amd64 0.7.4-2 [13.2 kB] Get:306 http://mirror-ubc.debian.org/debian/ jessie/main libcupsfilters1 amd64 1.0.61-5+deb8u3 [106 kB] Get:307 http://mirror-ubc.debian.org/debian/ jessie/main libcupsimage2 amd64 1.7.5-11+deb8u2 [117 kB] Get:308 http://mirror-ubc.debian.org/debian/ jessie/main libcups2 amd64 1.7.5-11+deb8u2 [284 kB] Get:309 http://mirror-ubc.debian.org/debian/ jessie/main libisc-export95 amd64 1:9.9.5.dfsg-9+deb8u14 [141 kB] Get:310 http://mirror-ubc.debian.org/debian/ jessie/main libdns-export100 amd64 1:9.9.5.dfsg-9+deb8u14 [456 kB] Get:311 http://mirror-ubc.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10 [37.8 kB] Get:312 http://mirror-ubc.debian.org/debian/ jessie/main libijs-0.35 amd64 0.35-10 [20.0 kB] Get:313 http://mirror-ubc.debian.org/debian/ jessie/main libisccfg-export90 amd64 1:9.9.5.dfsg-9+deb8u14 [41.4 kB] Get:314 http://mirror-ubc.debian.org/debian/ jessie/main libirs-export91 amd64 1:9.9.5.dfsg-9+deb8u14 [39.1 kB] Get:315 http://mirror-ubc.debian.org/debian/ jessie/main libjasper1 amd64 1.900.1-debian1-2.4+deb8u3 [134 kB] Get:316 http://mirror-ubc.debian.org/debian/ jessie/main liblcms2-2 amd64 2.6-3+deb8u1 [141 kB] Get:317 http://mirror-ubc.debian.org/debian/ jessie/main libncbi6 amd64 6.1.20120620-8 [3769 kB] Get:318 http://mirror-ubc.debian.org/debian/ jessie/main ncbi-data all 6.1.20120620-8 [3320 kB] Get:319 http://mirror-ubc.debian.org/debian/ jessie/main libpam-runtime all 1.1.8-3.1+deb8u2 [212 kB] Get:320 http://mirror-ubc.debian.org/debian/ jessie/main dbus amd64 1.8.22-0+deb8u1 [292 kB] Get:321 http://mirror-ubc.debian.org/debian/ jessie/main libpam-systemd amd64 215-17+deb8u7 [126 kB] Get:322 http://mirror-ubc.debian.org/debian/ jessie/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:323 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-0-2 amd64 0.1.6-3 [50.4 kB] Get:324 http://mirror-ubc.debian.org/debian/ jessie/main poppler-data all 0.4.7-1 [1491 kB] Get:325 http://mirror-ubc.debian.org/debian/ jessie/main libsystemd-login0 amd64 215-17+deb8u7 [49.8 kB] Get:326 http://mirror-ubc.debian.org/debian/ jessie/main multiarch-support amd64 2.19-18+deb8u10 [181 kB] Get:327 http://mirror-ubc.debian.org/debian/ jessie/main isc-dhcp-common amd64 4.3.1-6+deb8u2 [211 kB] Get:328 http://mirror-ubc.debian.org/debian/ jessie/main isc-dhcp-client amd64 4.3.1-6+deb8u2 [250 kB] Get:329 http://mirror-ubc.debian.org/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1 [67.6 kB] Get:330 http://mirror-ubc.debian.org/debian/ jessie/main debconf-i18n all 1.5.56+deb8u1 [206 kB] Get:331 http://mirror-ubc.debian.org/debian/ jessie/main krb5-locales all 1.12.1+dfsg-19+deb8u4 [2649 kB] Get:332 http://mirror-ubc.debian.org/debian/ jessie/main libclass-isa-perl all 0.36-5 [10.1 kB] Get:333 http://mirror-ubc.debian.org/debian/ jessie/main libswitch-perl all 2.17-2 [20.5 kB] Get:334 http://mirror-ubc.debian.org/debian/ jessie/main xz-utils amd64 5.1.1alpha+20120614-2+b3 [221 kB] Get:335 http://mirror-ubc.debian.org/debian/ jessie/main amap-align amd64 2.2-4 [132 kB] Get:336 http://mirror-ubc.debian.org/debian/ jessie/main bedtools amd64 2.21.0-1 [608 kB] Get:337 http://mirror-ubc.debian.org/debian/ jessie/main libio-string-perl all 1.08-3 [12.3 kB] Get:338 http://mirror-ubc.debian.org/debian/ jessie/main libdata-stag-perl all 0.13-1 [476 kB] Get:339 http://mirror-ubc.debian.org/debian/ jessie/main bioperl all 1.6.924-1 [419 kB] Get:340 http://mirror-ubc.debian.org/debian/ jessie/main libbio-perl-perl all 1.6.924-1 [4763 kB] Get:341 http://mirror-ubc.debian.org/debian/ jessie/main bioperl-run all 1.6.9-2 [44.0 kB] Get:342 http://mirror-ubc.debian.org/debian/ jessie/main libbio-perl-run-perl all 1.6.9-2 [753 kB] Get:343 http://mirror-ubc.debian.org/debian/ jessie/main blast2 amd64 1:2.2.26.20120620-8 [559 kB] Get:344 http://mirror-ubc.debian.org/debian/ jessie/main bwa amd64 0.7.10-1 [169 kB] Get:345 http://mirror-ubc.debian.org/debian/ jessie/main libargtable2-0 amd64 12-1.1 [17.2 kB] Get:346 http://mirror-ubc.debian.org/debian/ jessie/main clustalo amd64 1.2.1-1 [251 kB] Get:347 http://mirror-ubc.debian.org/debian/ jessie/main clustalw amd64 2.1+lgpl-4 [276 kB] Get:348 http://mirror-ubc.debian.org/debian/ jessie/main dialign amd64 2.2.1-7 [135 kB] Get:349 http://mirror-ubc.debian.org/debian/ jessie/main dialign-tx-data all 1.0.2-7 [880 kB] Get:350 http://mirror-ubc.debian.org/debian/ jessie/main dialign-tx amd64 1.0.2-7 [83.0 kB] Get:351 http://mirror-ubc.debian.org/debian/ jessie/main libhpdf-2.2.1 amd64 2.2.1-1.1 [322 kB] Get:352 http://mirror-ubc.debian.org/debian/ jessie/main emboss amd64 6.6.0+dfsg-1 [1023 kB] Get:353 http://mirror-ubc.debian.org/debian/ jessie/main emboss-lib amd64 6.6.0+dfsg-1 [3102 kB] Get:354 http://mirror-ubc.debian.org/debian/ jessie/main emboss-data all 6.6.0+dfsg-1 [60.8 MB] Get:355 http://mirror-ubc.debian.org/debian/ jessie/main libjbig2dec0 amd64 0.13-4~deb8u2 [60.2 kB] Get:356 http://mirror-ubc.debian.org/debian/ jessie/main ghostscript amd64 9.06~dfsg-2+deb8u6 [84.9 kB] Get:357 http://mirror-ubc.debian.org/debian/ jessie/main libgs9 amd64 9.06~dfsg-2+deb8u6 [1916 kB] Get:358 http://mirror-ubc.debian.org/debian/ jessie/main libgs9-common all 9.06~dfsg-2+deb8u6 [1980 kB] Get:359 http://mirror-ubc.debian.org/debian/ jessie/main hmmer amd64 3.1b1-3 [1026 kB] Get:360 http://mirror-ubc.debian.org/debian/ jessie/main infernal amd64 1.1.1-2 [1862 kB] Get:361 http://mirror-ubc.debian.org/debian/ jessie/main javascript-common all 11 [6120 B] Get:362 http://mirror-ubc.debian.org/debian/ jessie/main libapache-dbi-perl all 1.12-1 [54.6 kB] Get:363 http://mirror-ubc.debian.org/debian/ jessie/main libarchive-extract-perl all 0.72-1 [24.8 kB] Get:364 http://mirror-ubc.debian.org/debian/ jessie/main libclass-method-modifiers-perl all 2.11-1 [18.5 kB] Get:365 http://mirror-ubc.debian.org/debian/ jessie/main librole-tiny-perl all 1.003004-1 [19.4 kB] Get:366 http://mirror-ubc.debian.org/debian/ jessie/main libimport-into-perl all 1.002004-1 [11.5 kB] Get:367 http://mirror-ubc.debian.org/debian/ jessie/main libstrictures-perl all 1.005005-1 [13.5 kB] Get:368 http://mirror-ubc.debian.org/debian/ jessie/main libmoo-perl all 1.006001-1 [62.7 kB] Get:369 http://mirror-ubc.debian.org/debian/ jessie/main libexporter-tiny-perl all 0.038-2 [28.7 kB] Get:370 http://mirror-ubc.debian.org/debian/ jessie/main libtype-tiny-perl all 1.000004-1 [269 kB] Get:371 http://mirror-ubc.debian.org/debian/ jessie/main libarray-compare-perl all 2.11-1 [14.2 kB] Get:372 http://mirror-ubc.debian.org/debian/ jessie/main libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:373 http://mirror-ubc.debian.org/debian/ jessie/main libb-hooks-op-check-perl amd64 0.19-2+b1 [11.3 kB] Get:374 http://mirror-ubc.debian.org/debian/ jessie/main liblexical-sealrequirehints-perl amd64 0.007-1+b2 [14.4 kB] Get:375 http://mirror-ubc.debian.org/debian/ jessie/main libbareword-filehandles-perl amd64 0.003-1+b2 [8922 B] Get:376 http://mirror-ubc.debian.org/debian/ jessie/main libbio-asn1-entrezgene-perl all 1.700-1 [40.9 kB] Get:377 http://mirror-ubc.debian.org/debian/ jessie/main libhash-merge-perl all 0.200-1 [14.7 kB] Get:378 http://mirror-ubc.debian.org/debian/ jessie/main libsql-abstract-perl all 1.81-1 [79.2 kB] Get:379 http://mirror-ubc.debian.org/debian/ jessie/main libclass-accessor-grouped-perl all 0.10012-1 [24.0 kB] Get:380 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-pluggable-perl all 5.1-1 [25.0 kB] Get:381 http://mirror-ubc.debian.org/debian/ jessie/main libconfig-any-perl all 0.24-1 [36.3 kB] Get:382 http://mirror-ubc.debian.org/debian/ jessie/main libdata-dumper-concise-perl all 2.022-1 [16.4 kB] Get:383 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-find-perl all 0.12-1 [9952 B] Get:384 http://mirror-ubc.debian.org/debian/ jessie/main libpath-class-perl all 0.35-1 [43.4 kB] Get:385 http://mirror-ubc.debian.org/debian/ jessie/main libdbix-class-perl all 0.082810-2 [804 kB] Get:386 http://mirror-ubc.debian.org/debian/ jessie/main libbio-chado-schema-perl all 0.20000-1 [118 kB] Get:387 http://mirror-ubc.debian.org/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213 kB] Get:388 http://mirror-ubc.debian.org/debian/ jessie/main libcgi-fast-perl all 1:2.04-1 [10.9 kB] Get:389 http://mirror-ubc.debian.org/debian/ jessie/main libclass-data-inheritable-perl all 0.08-2 [9296 B] Get:390 http://mirror-ubc.debian.org/debian/ jessie/main libclass-tiny-perl all 1.000-1 [17.8 kB] Get:391 http://mirror-ubc.debian.org/debian/ jessie/main libconfig-general-perl all 2.56-1 [70.0 kB] Get:392 http://mirror-ubc.debian.org/debian/ jessie/main libconfig-tiny-perl all 2.20-1 [16.4 kB] Get:393 http://mirror-ubc.debian.org/debian/ jessie/main libcpan-meta-perl all 2.142690-1 [125 kB] Get:394 http://mirror-ubc.debian.org/debian/ jessie/main libcrypt-rc4-perl all 2.02-2 [8150 B] Get:395 http://mirror-ubc.debian.org/debian/ jessie/main libdata-compare-perl all 1.23-0.1 [21.5 kB] Get:396 http://mirror-ubc.debian.org/debian/ jessie/main libdata-section-perl all 0.200006-1 [13.4 kB] Get:397 http://mirror-ubc.debian.org/debian/ jessie/main libdate-manip-perl all 6.47-1 [923 kB] Get:398 http://mirror-ubc.debian.org/debian/ jessie/main libfile-sharedir-perl all 1.102-1 [12.4 kB] Get:399 http://mirror-ubc.debian.org/debian/ jessie/main libpackage-variant-perl all 1.002002-3 [19.0 kB] Get:400 http://mirror-ubc.debian.org/debian/ jessie/main libsql-translator-perl all 0.11020-1 [436 kB] Get:401 http://mirror-ubc.debian.org/debian/ jessie/main libdbicx-testdatabase-perl all 0.05-1 [10.0 kB] Get:402 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-caller-perl amd64 2.06-1+b2 [12.7 kB] Get:403 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-lexalias-perl amd64 0.05-1+b2 [9686 B] Get:404 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-partialdump-perl all 0.17-1 [14.5 kB] Get:405 http://mirror-ubc.debian.org/debian/ jessie/main libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:406 http://mirror-ubc.debian.org/debian/ jessie/main libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:407 http://mirror-ubc.debian.org/debian/ jessie/main libgetopt-long-descriptive-perl all 0.097-1 [26.9 kB] Get:408 http://mirror-ubc.debian.org/debian/ jessie/main libglib2.0-data all 2.42.1-1 [2173 kB] Get:409 http://mirror-ubc.debian.org/debian/ jessie/main libgraph-perl all 1:0.96-1.1 [126 kB] Get:410 http://mirror-ubc.debian.org/debian/ jessie/main libxml-twig-perl all 1:3.48-1 [178 kB] Get:411 http://mirror-ubc.debian.org/debian/ jessie/main libgraphviz-perl all 2.16-1 [111 kB] Get:412 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-format-perl all 2.11-1 [43.1 kB] Get:413 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-tableextract-perl all 2.11-1 [32.0 kB] Get:414 http://mirror-ubc.debian.org/debian/ jessie/main libindirect-perl amd64 0.33-1 [26.4 kB] Get:415 http://mirror-ubc.debian.org/debian/ jessie/main libjs-jquery all 1.7.2+dfsg-3.2 [97.5 kB] Get:416 http://mirror-ubc.debian.org/debian/ jessie/main libjson-perl all 2.61-1 [84.7 kB] Get:417 http://mirror-ubc.debian.org/debian/ jessie/main liblog-message-perl all 0.8-1 [26.0 kB] Get:418 http://mirror-ubc.debian.org/debian/ jessie/main liblog-message-simple-perl all 0.10-2 [8126 B] Get:419 http://mirror-ubc.debian.org/debian/ jessie/main libmath-spline-perl all 0.02-1 [7992 B] Get:420 http://mirror-ubc.debian.org/debian/ jessie/main libmldbm-perl all 2.05-1 [18.3 kB] Get:421 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-build-perl all 0.421000-2+deb8u1 [265 kB] Get:422 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-signature-perl all 0.73-1+deb8u2 [30.4 kB] Get:423 http://mirror-ubc.debian.org/debian/ jessie/main libmultidimensional-perl amd64 0.010-1+b2 [8506 B] Get:424 http://mirror-ubc.debian.org/debian/ jessie/main libpackage-constants-perl all 0.04-1 [5820 B] Get:425 http://mirror-ubc.debian.org/debian/ jessie/main libpam-cap amd64 1:2.24-8 [12.5 kB] Get:426 http://mirror-ubc.debian.org/debian/ jessie/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:427 http://mirror-ubc.debian.org/debian/ jessie/main libpod-latex-perl all 0.61-1 [34.7 kB] Get:428 http://mirror-ubc.debian.org/debian/ jessie/main libregexp-common-perl all 2013031301-1 [173 kB] Get:429 http://mirror-ubc.debian.org/debian/ jessie/main libpod-readme-perl all 0.11-1 [15.3 kB] Get:430 http://mirror-ubc.debian.org/debian/ jessie/main libreadonly-perl all 2.000-1 [20.8 kB] Get:431 http://mirror-ubc.debian.org/debian/ jessie/main libtext-template-perl all 1.46-1 [53.1 kB] Get:432 http://mirror-ubc.debian.org/debian/ jessie/main libsoftware-license-perl all 0.103010-3 [119 kB] Get:433 http://mirror-ubc.debian.org/debian/ jessie/main libsort-naturally-perl all 1.03-1 [13.9 kB] Get:434 http://mirror-ubc.debian.org/debian/ jessie/main libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:435 http://mirror-ubc.debian.org/debian/ jessie/main libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:436 http://mirror-ubc.debian.org/debian/ jessie/main libstatistics-descriptive-perl all 3.0607-1 [41.4 kB] Get:437 http://mirror-ubc.debian.org/debian/ jessie/main libsvg-perl all 2.59-1 [75.2 kB] Get:438 http://mirror-ubc.debian.org/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1 kB] Get:439 http://mirror-ubc.debian.org/debian/ jessie/main libtext-reform-perl all 1.20-1 [39.9 kB] Get:440 http://mirror-ubc.debian.org/debian/ jessie/main libtext-autoformat-perl all 1.669006-1 [33.9 kB] Get:441 http://mirror-ubc.debian.org/debian/ jessie/main libtext-recordparser-perl all 1.6.3-1 [42.2 kB] Get:442 http://mirror-ubc.debian.org/debian/ jessie/main libtext-soundex-perl amd64 3.4-1+b2 [13.7 kB] Get:443 http://mirror-ubc.debian.org/debian/ jessie/main libtext-tabulardisplay-perl all 1.38-1 [14.1 kB] Get:444 http://mirror-ubc.debian.org/debian/ jessie/main libtie-ixhash-perl all 1.23-1 [12.2 kB] Get:445 http://mirror-ubc.debian.org/debian/ jessie/main libtree-dagnode-perl all 1.22-1 [59.5 kB] Get:446 http://mirror-ubc.debian.org/debian/ jessie/main libtype-tiny-xs-perl amd64 0.010-1 [27.1 kB] Get:447 http://mirror-ubc.debian.org/debian/ jessie/main libxml-sax-writer-perl all 0.54-1 [23.4 kB] Get:448 http://mirror-ubc.debian.org/debian/ jessie/main libxml-writer-perl all 0.625-1 [29.7 kB] Get:449 http://mirror-ubc.debian.org/debian/ jessie/main libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:450 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-perl all 1.13-1 [69.7 kB] Get:451 http://mirror-ubc.debian.org/debian/ jessie/main mafft amd64 7.205-1 [775 kB] Get:452 http://mirror-ubc.debian.org/debian/ jessie/main mustang amd64 3.2.2-1 [112 kB] Get:453 http://mirror-ubc.debian.org/debian/ jessie/main ncbi-blast+ amd64 2.2.29-3 [7965 kB] Get:454 http://mirror-ubc.debian.org/debian/ jessie/main phyml amd64 2:20120412-2 [939 kB] Get:455 http://mirror-ubc.debian.org/debian/ jessie/main poa amd64 2.0+20060928-3 [50.8 kB] Get:456 http://mirror-ubc.debian.org/debian/ jessie/main prank amd64 0.0.140110-1 [327 kB] Get:457 http://mirror-ubc.debian.org/debian/ jessie/main primer3 amd64 2.3.6-1 [168 kB] Get:458 http://mirror-ubc.debian.org/debian/ jessie/main probalign amd64 1.4-3 [67.9 kB] Get:459 http://mirror-ubc.debian.org/debian/ jessie/main proda amd64 1.0-8 [58.3 kB] Get:460 http://mirror-ubc.debian.org/debian/ jessie/main psmisc amd64 22.21-2 [119 kB] Get:461 http://mirror-ubc.debian.org/debian/ jessie/main rename all 0.20-3 [12.4 kB] Get:462 http://mirror-ubc.debian.org/debian/ jessie/main rubygems-integration all 1.8 [4514 B] Get:463 http://mirror-ubc.debian.org/debian/ jessie/main libruby2.1 amd64 2.1.5-2+deb8u3 [3290 kB] Get:464 http://mirror-ubc.debian.org/debian/ jessie/main ruby2.1 amd64 2.1.5-2+deb8u3 [276 kB] Get:465 http://mirror-ubc.debian.org/debian/ jessie/main ruby all 1:2.1.5+deb8u2 [9688 B] Get:466 http://mirror-ubc.debian.org/debian/ jessie/main samtools amd64 0.1.19-1 [563 kB] Get:467 http://mirror-ubc.debian.org/debian/ jessie/main shared-mime-info amd64 1.3-1 [634 kB] Get:468 http://mirror-ubc.debian.org/debian/ jessie/main sim4 amd64 0.0.20121010-1 [49.8 kB] Get:469 http://mirror-ubc.debian.org/debian/ jessie/main ssl-cert all 1.0.35 [20.9 kB] Get:470 http://mirror-ubc.debian.org/debian/ jessie/main t-coffee amd64 11.00.8cbe486-1 [921 kB] Get:471 http://mirror-ubc.debian.org/debian/ jessie/main tigr-glimmer amd64 3.02-3 [276 kB] Get:472 http://mirror-ubc.debian.org/debian/ jessie/main tm-align amd64 20140601+dfsg-1 [49.7 kB] Get:473 http://mirror-ubc.debian.org/debian/ jessie/main wise-data all 2.4.1-17 [108 kB] Get:474 http://mirror-ubc.debian.org/debian/ jessie/main wise amd64 2.4.1-17 [961 kB] Get:475 http://mirror-ubc.debian.org/debian/ jessie/main xdg-user-dirs amd64 0.15-2 [52.1 kB] Get:476 http://mirror-ubc.debian.org/debian/ jessie/main bowtie amd64 1.1.1-2 [1369 kB] Get:477 http://mirror-ubc.debian.org/debian/ jessie/main libgd-perl amd64 2.53-1+b1 [180 kB] Get:478 http://mirror-ubc.debian.org/debian/ jessie/main libset-scalar-perl all 1.29-1 [35.3 kB] Get:479 http://mirror-ubc.debian.org/debian/ jessie/main lynx-cur amd64 2.8.9dev1-2+deb8u1 [1623 kB] Get:480 http://mirror-ubc.debian.org/debian/ jessie/main lynx all 2.8.9dev1-2+deb8u1 [232 kB] Get:481 http://mirror-ubc.debian.org/debian/ jessie/main ttf-liberation all 1.07.4-1 [9540 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 217 MB in 11s (18.6 MB/s) (Reading database ... 27963 files and directories currently installed.) 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Installing new version of config file /etc/gai.conf ... dpkg: gcc-4.7-base:amd64: dependency problems, but removing anyway as you requested: libstdc++6:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgfortran3:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgcc1:amd64 depends on gcc-4.7-base (= 4.7.2-5). libquadmath0:amd64 depends on gcc-4.7-base (= 4.7.2-5). (Reading database ... 27956 files and directories currently installed.) Removing gcc-4.7-base:amd64 ... Selecting previously unselected package gcc-4.9-base:amd64. (Reading database ... 27947 files and directories currently installed.) Unpacking gcc-4.9-base:amd64 (from .../gcc-4.9-base_4.9.2-10_amd64.deb) ... Setting up gcc-4.9-base:amd64 (4.9.2-10) ... (Reading database ... 27956 files and directories currently installed.) Preparing to replace libstdc++6:amd64 4.7.2-5 (using .../libstdc++6_4.9.2-10_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.9.2-10) ... 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Leaving 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Unpacking perl-doc (5.20.2-3+deb8u9) over (5.14.2-21+deb7u3) ... Preparing to unpack .../libclass-xsaccessor-perl_1.19-2+b4_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-2+b4) over (1.13-1) ... Preparing to unpack .../perl_5.20.2-3+deb8u9_amd64.deb ... Unpacking perl (5.20.2-3+deb8u9) over (5.14.2-21+deb7u3) ... Preparing to unpack .../libcommon-sense-perl_3.73-2+b3_amd64.deb ... Unpacking libcommon-sense-perl (3.73-2+b3) over (3.6-1) ... Preparing to unpack .../libio-socket-ip-perl_0.32-1_all.deb ... Unpacking libio-socket-ip-perl (0.32-1) over (0.16-2) ... Preparing to unpack .../libsocket-perl_2.016-1_amd64.deb ... Unpacking libsocket-perl (2.016-1) over (2.002-1) ... Preparing to unpack .../libapr1_1.5.1-3_amd64.deb ... Unpacking libapr1:amd64 (1.5.1-3) over (1.4.6-3+deb7u1) ... Selecting previously unselected package libdb5.3:amd64. Preparing to unpack .../libdb5.3_5.3.28-9+deb8u1_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28-9+deb8u1) ... Setting up libdb5.3:amd64 (5.3.28-9+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 27744 files and directories currently installed.) Preparing to unpack .../libaprutil1-ldap_1.5.4-1_amd64.deb ... Unpacking libaprutil1-ldap:amd64 (1.5.4-1) over (1.4.1-3) ... Preparing to unpack .../libaprutil1-dbd-sqlite3_1.5.4-1_amd64.deb ... Unpacking libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) over (1.4.1-3) ... Preparing to unpack .../libaprutil1_1.5.4-1_amd64.deb ... Unpacking libaprutil1:amd64 (1.5.4-1) over (1.4.1-3) ... Selecting previously unselected package liblua5.1-0:amd64. Preparing to unpack .../liblua5.1-0_5.1.5-7.1_amd64.deb ... Unpacking liblua5.1-0:amd64 (5.1.5-7.1) ... Preparing to unpack .../apache2-utils_2.4.10-10+deb8u11_amd64.deb ... Unpacking apache2-utils (2.4.10-10+deb8u11) over (2.2.22-13+deb7u6) ... Preparing to unpack .../libapache2-mod-perl2_2.0.9~1624218-2+deb8u2_amd64.deb ... 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Changing shell of daemon from /bin/sh to /usr/sbin/nologin Changing shell of bin from /bin/sh to /usr/sbin/nologin Changing shell of sys from /bin/sh to /usr/sbin/nologin Changing shell of games from /bin/sh to /usr/sbin/nologin Changing shell of man from /bin/sh to /usr/sbin/nologin Changing shell of lp from /bin/sh to /usr/sbin/nologin Changing shell of mail from /bin/sh to /usr/sbin/nologin Changing shell of news from /bin/sh to /usr/sbin/nologin Changing shell of uucp from /bin/sh to /usr/sbin/nologin Changing shell of proxy from /bin/sh to /usr/sbin/nologin Changing shell of www-data from /bin/sh to /usr/sbin/nologin Changing shell of backup from /bin/sh to /usr/sbin/nologin Changing shell of list from /bin/sh to /usr/sbin/nologin Changing shell of irc from /bin/sh to /usr/sbin/nologin Changing shell of gnats from /bin/sh to /usr/sbin/nologin Changing shell of nobody from /bin/sh to /usr/sbin/nologin 16 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 28815 files and directories currently installed.) 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Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.421000-2+deb8u1) ... Selecting previously unselected package libmodule-signature-perl. Preparing to unpack .../libmodule-signature-perl_0.73-1+deb8u2_all.deb ... Unpacking libmodule-signature-perl (0.73-1+deb8u2) ... Selecting previously unselected package libmultidimensional-perl. Preparing to unpack .../libmultidimensional-perl_0.010-1+b2_amd64.deb ... Unpacking libmultidimensional-perl (0.010-1+b2) ... Selecting previously unselected package libpackage-constants-perl. Preparing to unpack .../libpackage-constants-perl_0.04-1_all.deb ... Unpacking libpackage-constants-perl (0.04-1) ... Selecting previously unselected package libpam-cap:amd64. Preparing to unpack .../libpam-cap_1%3a2.24-8_amd64.deb ... Unpacking libpam-cap:amd64 (1:2.24-8) ... Preparing to unpack .../libpaper-utils_1.1.24+nmu4_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu4) over (1.1.24+nmu2) ... Selecting previously unselected package libpod-latex-perl. Preparing to unpack .../libpod-latex-perl_0.61-1_all.deb ... Adding 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Adding 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Unpacking libpod-latex-perl (0.61-1) ... Selecting previously unselected package libregexp-common-perl. Preparing to unpack .../libregexp-common-perl_2013031301-1_all.deb ... Unpacking libregexp-common-perl (2013031301-1) ... Selecting previously unselected package libpod-readme-perl. Preparing to unpack .../libpod-readme-perl_0.11-1_all.deb ... Unpacking libpod-readme-perl (0.11-1) ... Preparing to unpack .../libreadonly-perl_2.000-1_all.deb ... 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Preparing to unpack .../ttf-liberation_1.07.4-1_all.deb ... Unpacking ttf-liberation (1.07.4-1) over (1.07.2-6) ... Setting up libquadmath0:amd64 (4.9.2-10) ... Setting up libgfortran3:amd64 (4.9.2-10) ... Setting up libcdt5 (2.38.0-7) ... Setting up libcgraph6 (2.38.0-7) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up ucf (3.0030) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fonts-liberation (1.07.4-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Installing new version of config file /etc/fonts/conf.d/README ... Installing new version of config file /etc/fonts/fonts.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-autohint.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-no-sub-pixel.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-sub-pixel-bgr.conf ... 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Removing obsolete conffile /etc/fonts/fonts.dtd ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up fontconfig (2.11.0-6.3+deb8u1) ... Regenerating fonts cache... done. Setting up perl-modules (5.20.2-3+deb8u9) ... Setting up libgdbm3:amd64 (1.8.3-13.1) ... Setting up perl (5.20.2-3+deb8u9) ... Setting up perl-doc (5.20.2-3+deb8u9) ... Setting up libclass-xsaccessor-perl (1.19-2+b4) ... Setting up libcommon-sense-perl (3.73-2+b3) ... Setting up netbase (5.3) ... Installing new version of config file /etc/protocols ... Installing new version of config file /etc/services ... Setting up libsocket-perl (2.016-1) ... Setting up libio-socket-ip-perl (0.32-1) ... Setting up libapr1:amd64 (1.5.1-3) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u7) ... Checking for services that may need to be restarted...done. Checking for services that may need to be restarted...done. Setting up libaprutil1:amd64 (1.5.4-1) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-6) ... Setting up libnettle4:amd64 (2.7.1-5+deb8u2) ... Setting up libhogweed2:amd64 (2.7.1-5+deb8u2) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u3) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u3) ... Setting up libaprutil1-ldap:amd64 (1.5.4-1) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Setting up liblua5.1-0:amd64 (5.1.5-7.1) ... Setting up apache2-utils (2.4.10-10+deb8u11) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u5) ... Setting up apache2-bin (2.4.10-10+deb8u11) ... Setting up libperl5.20 (5.20.2-3+deb8u9) ... Setting up libdevel-symdump-perl (2.12-1) ... Setting up liburi-perl (1.64-1) ... Setting up openssl (1.0.1t-1+deb8u7) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 39 added, 36 removed; done. Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libnet-http-perl (6.07-1) ... Setting up mime-support (3.58) ... Installing new version of config file /etc/mime.types ... Setting up apache2-data (2.4.10-10+deb8u11) ... Setting up apache2 (2.4.10-10+deb8u11) ... Installing new version of config file /etc/apache2/apache2.conf ... Installing new version of config file /etc/apache2/envvars ... Installing new version of config file /etc/apache2/mods-available/actions.conf ... Installing new version of config file /etc/apache2/mods-available/alias.conf ... Installing new version of config file /etc/apache2/mods-available/asis.load ... Installing new version of config file /etc/apache2/mods-available/auth_basic.load ... Installing new version of config file /etc/apache2/mods-available/auth_digest.load ... Installing new version of config file /etc/apache2/mods-available/authz_dbm.load ... Installing new version of config file /etc/apache2/mods-available/authz_groupfile.load ... Installing new version of config file /etc/apache2/mods-available/authz_host.load ... Installing new version of config file /etc/apache2/mods-available/authz_user.load ... Installing new version of config file /etc/apache2/mods-available/autoindex.conf ... Installing new version of config file /etc/apache2/mods-available/cgid.conf ... Installing new version of config file /etc/apache2/mods-available/dav_fs.conf ... Installing new version of config file /etc/apache2/mods-available/deflate.conf ... Installing new version of config file /etc/apache2/mods-available/deflate.load ... Installing new version of config file /etc/apache2/mods-available/dir.conf ... Installing new version of config file /etc/apache2/mods-available/include.load ... Installing new version of config file /etc/apache2/mods-available/info.conf ... Installing new version of config file /etc/apache2/mods-available/ldap.conf ... Installing new version of config file /etc/apache2/mods-available/mime.conf ... Installing new version of config file /etc/apache2/mods-available/mime_magic.conf ... Installing new version of config file /etc/apache2/mods-available/negotiation.conf ... Installing new version of config file /etc/apache2/mods-available/proxy.conf ... Installing new version of config file /etc/apache2/mods-available/proxy_balancer.conf ... Installing new version of config file /etc/apache2/mods-available/proxy_balancer.load ... Installing new version of config file /etc/apache2/mods-available/proxy_ftp.conf ... Installing new version of config file /etc/apache2/mods-available/reqtimeout.conf ... Installing new version of config file /etc/apache2/mods-available/setenvif.conf ... Installing new version of config file /etc/apache2/mods-available/ssl.conf ... Installing new version of config file /etc/apache2/mods-available/ssl.load ... Installing new version of config file /etc/apache2/mods-available/status.conf ... Installing new version of config file /etc/apache2/mods-available/userdir.conf ... Installing new version of config file /etc/apache2/ports.conf ... Installing new version of config file /etc/cron.daily/apache2 ... Installing new version of config file /etc/default/apache2 ... Installing new version of config file /etc/init.d/apache2 ... Installing new version of config file /etc/logrotate.d/apache2 ... Removing obsolete conffile /etc/apache2/mods-available/authz_default.load ... Removing obsolete conffile /etc/apache2/mods-available/authn_default.load ... Removing obsolete conffile /etc/apache2/mods-available/mem_cache.load ... Removing obsolete conffile /etc/apache2/mods-available/mem_cache.conf ... Removing obsolete conffile /etc/apache2/mods-available/authn_alias.load ... Removing obsolete conffile /etc/apache2/mods-available/cern_meta.load ... Removing obsolete conffile /etc/apache2/mods-available/disk_cache.load ... Removing obsolete conffile /etc/apache2/mods-available/disk_cache.conf ... Removing obsolete conffile /etc/apache2/mods-available/imagemap.load ... Removing obsolete directory /etc/apache2/conf.d Enabling module mpm_worker. Enabling module authn_core. disable obsolete module authz_default Enabling module authz_core. Enabling module filter. Enabling module access_compat. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. invoke-rc.d: policy-rc.d denied execution of restart. Setting up apache2.2-common (2.4.10-10+deb8u11) ... Setting up apache2-mpm-worker (2.4.10-10+deb8u11) ... Setting up apache2.2-bin (2.4.10-10+deb8u11) ... Setting up libtext-charwidth-perl (0.04-7+b3) ... Setting up libpackage-stash-xs-perl (0.28-2+b1) ... Setting up liblist-moreutils-perl (0.33-2+b1) ... Setting up libclone-perl (0.37-1+b1) ... Setting up libpadwalker-perl (1.98-1+b1) ... Setting up libyaml-libyaml-perl (0.41-6) ... Setting up libbit-vector-perl (7.3-1+b2) ... Setting up libdate-calc-perl (6.3-2) ... Setting up libdate-calc-xs-perl (6.3-2) ... Setting up libparams-util-perl (1.07-2+b1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libdata-optlist-perl (0.109-1) ... Setting up libparams-classify-perl (0.013-4+b2) ... Setting up libmodule-runtime-perl (0.014-1) ... Setting up libtry-tiny-perl (0.22-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libsub-exporter-progressive-perl (0.001011-1) ... Setting up libvariable-magic-perl (0.55-1) ... Setting up libb-hooks-endofscope-perl (0.13-1) ... Setting up libpackage-stash-perl (0.37-1) ... Setting up libsub-identify-perl (0.08-1) ... Setting up libsub-name-perl (0.12-1) ... Setting up libnamespace-clean-perl (0.25-1) ... Setting up libclass-load-perl (0.22-1) ... Setting up libclass-load-xs-perl (0.08-1+b1) ... Setting up libio-pty-perl (1:1.08-1+b4) ... Setting up libipc-sharelite-perl (0.17-3+b2) ... Setting up libdbi-perl (1.631-3+b1) ... Setting up libdbd-sqlite3-perl (1.44-1) ... Setting up libbsd-resource-perl (1.2907-1+b2) ... Setting up liblocale-gettext-perl (1.05-8+b1) ... Setting up libreadonly-xs-perl (1.05-1+b1) ... Setting up libjson-xs-perl (2.340-1+b2) ... Setting up libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxslt-perl (1.92-1+b1) ... Setting up libalgorithm-diff-perl (1.19.02-3) ... Setting up libalgorithm-diff-xs-perl (0.04-3+b1) ... Setting up ttf-dejavu-core (2.34-1) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up perl-tk (1:804.032-3+b3) ... Setting up mysql-common (5.5.58-0+deb8u1) ... Installing new version of config file /etc/mysql/my.cnf ... Setting up libmysqlclient18:amd64 (5.5.58-0+deb8u1) ... Setting up libdbd-mysql-perl (4.028-2+deb8u2) ... Setting up libyaml-syck-perl (1.27-2+b2) ... Setting up libtext-iconv-perl (1.7-5+b2) ... Setting up libparams-validate-perl (1.13-1+b1) ... Setting up libcrypt-ssleay-perl (0.58-1+b2) ... Setting up libkeyutils1:amd64 (1.5.9-5+b1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libpq5:amd64 (9.4.15-0+deb8u1) ... Setting up libdbd-pg-perl (3.4.2-1) ... Setting up libtemplate-perl (2.24-1.2+b1) ... Setting up libclass-c3-xs-perl (0.13-2+b1) ... Setting up libconvert-binary-c-perl (0.76-3+b2) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b1) ... Setting up libunicode-map-perl (0.112-11+b1) ... Setting up liberror-perl (0.17-1.1) ... Setting up libcache-cache-perl (1.07-2) ... Setting up libace-perl (1.92-3+b1) ... Setting up libfcgi-perl (0.77-1+deb8u1) ... Setting up libdevel-stacktrace-perl (1.3400-1) ... Setting up libdist-checkconflicts-perl (0.11-1) ... Setting up libmodule-runtime-conflicts-perl (0.001-1) ... Setting up libdevel-globaldestruction-perl (0.13-1) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up libeval-closure-perl (0.11-1) ... Setting up libalgorithm-c3-perl (0.09-1) ... Setting up libclass-c3-perl (0.26-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up libmoose-perl (2.1213-1) ... Setting up iproute2 (3.16.0-2) ... Installing new version of config file /etc/iproute2/ematch_map ... Setting up iproute (1:3.16.0-2) ... Setting up ifupdown (0.7.53.1) ... Installing new version of config file /etc/init.d/networking ... Installing new version of config file /etc/init/network-interface-container.conf ... Installing new version of config file /etc/init/network-interface-security.conf ... Installing new version of config file /etc/init/network-interface.conf ... Installing new version of config file /etc/init/networking.conf ... Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libclass-inspector-perl (1.28-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libconvert-binhex-perl (1.123-2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libnet-smtp-ssl-perl (1.01-3) ... Setting up libmailtools-perl (2.13-1) ... Setting up libmime-tools-perl (5.505-1) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u4) ... Setting up libvpx1:amd64 (1.3.0-3) ... Setting up libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Setting up libgd3:amd64 (2.1.0-5+deb8u11) ... Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxcb-render0:amd64 (1.10-3+b1) ... Setting up libxcb-shm0:amd64 (1.10-3+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Setting up libglib2.0-0:amd64 (2.42.1-1+b1) ... No schema files found: doing nothing. Setting up libltdl7:amd64 (2.4.2-1.11+b1) ... Setting up libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Setting up libharfbuzz0b:amd64 (0.9.35-2) ... Setting up libthai-data (0.1.21-1) ... Setting up libdatrie1:amd64 (0.2.8-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up libpango-1.0-0:amd64 (1.36.8-3) ... Setting up libpangoft2-1.0-0:amd64 (1.36.8-3) ... Setting up libpangocairo-1.0-0:amd64 (1.36.8-3) ... Setting up libpangox-1.0-0:amd64 (0.0.2-5) ... Setting up libpangoxft-1.0-0:amd64 (1.36.8-3) ... Setting up libpango1.0-0:amd64 (1.36.8-3) ... Setting up libpathplan4 (2.38.0-7) ... Setting up libxdot4 (2.38.0-7) ... Setting up libgvc6 (2.38.0-7) ... Setting up libgvpr2 (2.38.0-7) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libxaw7:amd64 (2:1.0.12-2+b1) ... Setting up graphviz (2.38.0-7) ... Setting up libgpm2:amd64 (1.20.4-6.1+b2) ... Setting up libidn11:amd64 (1.29-1+deb8u2) ... Setting up libmagic1:amd64 (1:5.22+15-2+deb8u3) ... Setting up file (1:5.22+15-2+deb8u3) ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7 (2.7.9-2+deb8u1) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up fonts-droid (1:4.4.4r2-6) ... Removing obsolete conffile /etc/fonts/conf.avail/65-droid-sans-fonts.conf ... Setting up libavahi-common-data:amd64 (0.6.31-5) ... Setting up libavahi-common3:amd64 (0.6.31-5) ... Setting up libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Setting up libavahi-client3:amd64 (0.6.31-5) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libcap-ng0:amd64 (0.7.4-2) ... Setting up libcups2:amd64 (1.7.5-11+deb8u2) ... Setting up libisc-export95 (1:9.9.5.dfsg-9+deb8u14) ... Setting up libdns-export100 (1:9.9.5.dfsg-9+deb8u14) ... Setting up libgomp1:amd64 (4.9.2-10) ... Setting up libijs-0.35:amd64 (0.35-10) ... Setting up libisccfg-export90 (1:9.9.5.dfsg-9+deb8u14) ... Setting up libirs-export91 (1:9.9.5.dfsg-9+deb8u14) ... Setting up libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Setting up liblcms2-2:amd64 (2.6-3+deb8u1) ... Setting up ncbi-data (6.1.20120620-8) ... Setting up libncbi6:amd64 (6.1.20120620-8) ... Setting up dbus (1.8.22-0+deb8u1) ... Installing new version of config file /etc/dbus-1/session.conf ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libpam-systemd:amd64 (215-17+deb8u7) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Setting up libyaml-0-2:amd64 (0.1.6-3) ... Setting up poppler-data (0.4.7-1) ... Installing new version of config file /etc/ghostscript/cidfmap.d/90gs-cjk-resource-korea1.conf ... Setting up libsystemd-login0:amd64 (215-17+deb8u7) ... Setting up isc-dhcp-common (4.3.1-6+deb8u2) ... Setting up isc-dhcp-client (4.3.1-6+deb8u2) ... Setting up libxtables10 (1.4.21-2+b1) ... Setting up debconf-i18n (1.5.56+deb8u1) ... Setting up krb5-locales (1.12.1+dfsg-19+deb8u4) ... Setting up libclass-isa-perl (0.36-5) ... Setting up libswitch-perl (2.17-2) ... Setting up xz-utils (5.1.1alpha+20120614-2+b3) ... Setting up amap-align (2.2-4) ... Setting up bedtools (2.21.0-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libdata-stag-perl (0.13-1) ... Setting up libbio-perl-perl (1.6.924-1) ... Setting up bioperl (1.6.924-1) ... Setting up libbio-perl-run-perl (1.6.9-2) ... Setting up bioperl-run (1.6.9-2) ... Setting up blast2 (1:2.2.26.20120620-8) ... Setting up bwa (0.7.10-1) ... Setting up libargtable2-0 (12-1.1) ... Setting up clustalo (1.2.1-1) ... Setting up clustalw (2.1+lgpl-4) ... Setting up dialign (2.2.1-7) ... Setting up dialign-tx-data (1.0.2-7) ... Setting up dialign-tx (1.0.2-7) ... Setting up libhpdf-2.2.1 (2.2.1-1.1) ... Setting up emboss-lib (6.6.0+dfsg-1) ... Setting up emboss-data (6.6.0+dfsg-1) ... Setting up emboss (6.6.0+dfsg-1) ... Setting up libjbig2dec0 (0.13-4~deb8u2) ... Setting up libgs9-common (9.06~dfsg-2+deb8u6) ... Setting up hmmer (3.1b1-3) ... Setting up infernal (1.1.1-2) ... Setting up javascript-common (11) ... apache2_invoke: Enable configuration javascript-common invoke-rc.d: policy-rc.d denied execution of reload. Setting up libarchive-extract-perl (0.72-1) ... Setting up libclass-method-modifiers-perl (2.11-1) ... Setting up librole-tiny-perl (1.003004-1) ... Setting up libimport-into-perl (1.002004-1) ... Setting up libstrictures-perl (1.005005-1) ... Setting up libmoo-perl (1.006001-1) ... Setting up libexporter-tiny-perl (0.038-2) ... Setting up libtype-tiny-perl (1.000004-1) ... Setting up libarray-compare-perl (2.11-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libb-hooks-op-check-perl (0.19-2+b1) ... Setting up liblexical-sealrequirehints-perl (0.007-1+b2) ... Setting up libbareword-filehandles-perl (0.003-1+b2) ... Setting up libbio-asn1-entrezgene-perl (1.700-1) ... Setting up libhash-merge-perl (0.200-1) ... Setting up libsql-abstract-perl (1.81-1) ... Setting up libclass-accessor-grouped-perl (0.10012-1) ... Setting up libmodule-pluggable-perl (5.1-1) ... Setting up libconfig-any-perl (0.24-1) ... Setting up libdata-dumper-concise-perl (2.022-1) ... Setting up libmodule-find-perl (0.12-1) ... Setting up libpath-class-perl (0.35-1) ... Setting up libdbix-class-perl (0.082810-2) ... Setting up libbio-chado-schema-perl (0.20000-1) ... Setting up libcgi-pm-perl (4.09-1) ... Setting up libcgi-fast-perl (1:2.04-1) ... Setting up libclass-data-inheritable-perl (0.08-2) ... Setting up libclass-tiny-perl (1.000-1) ... Setting up libconfig-general-perl (2.56-1) ... Setting up libconfig-tiny-perl (2.20-1) ... Setting up libcpan-meta-perl (2.142690-1) ... Setting up libcrypt-rc4-perl (2.02-2) ... Setting up libdata-compare-perl (1.23-0.1) ... Setting up libdata-section-perl (0.200006-1) ... Setting up libdate-manip-perl (6.47-1) ... Setting up libfile-sharedir-perl (1.102-1) ... Setting up libpackage-variant-perl (1.002002-3) ... Setting up libsql-translator-perl (0.11020-1) ... Setting up libdbicx-testdatabase-perl (0.05-1) ... Setting up libdevel-caller-perl (2.06-1+b2) ... Setting up libdevel-lexalias-perl (0.05-1+b2) ... Setting up libdevel-partialdump-perl (0.17-1) ... Setting up libdigest-perl-md5-perl (1.9-1) ... Setting up libfile-slurp-tiny-perl (0.003-1) ... Setting up libgetopt-long-descriptive-perl (0.097-1) ... Setting up libglib2.0-data (2.42.1-1) ... Setting up libgraph-perl (1:0.96-1.1) ... Setting up libhtml-format-perl (2.11-1) ... Setting up libhtml-tableextract-perl (2.11-1) ... Setting up libindirect-perl (0.33-1) ... Setting up libjs-jquery (1.7.2+dfsg-3.2) ... Setting up libjson-perl (2.61-1) ... Setting up liblog-message-perl (0.8-1) ... Setting up liblog-message-simple-perl (0.10-2) ... Setting up libmath-spline-perl (0.02-1) ... Setting up libmldbm-perl (2.05-1) ... Setting up libmodule-build-perl (0.421000-2+deb8u1) ... Setting up libmodule-signature-perl (0.73-1+deb8u2) ... Setting up libmultidimensional-perl (0.010-1+b2) ... Setting up libpackage-constants-perl (0.04-1) ... Setting up libpam-cap:amd64 (1:2.24-8) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpod-latex-perl (0.61-1) ... Setting up libregexp-common-perl (2013031301-1) ... Setting up libpod-readme-perl (0.11-1) ... Setting up libreadonly-perl (2.000-1) ... Setting up libtext-template-perl (1.46-1) ... Setting up libsoftware-license-perl (0.103010-3) ... Setting up libsort-naturally-perl (1.03-1) ... Setting up libspreadsheet-writeexcel-perl (2.40-1) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1) ... Setting up libstatistics-descriptive-perl (3.0607-1) ... Setting up libsvg-perl (2.59-1) ... Setting up libterm-ui-perl (0.42-1) ... Setting up libtext-reform-perl (1.20-1) ... Setting up libtext-autoformat-perl (1.669006-1) ... Setting up libtext-recordparser-perl (1.6.3-1) ... Setting up libtext-soundex-perl (3.4-1+b2) ... Setting up libtext-tabulardisplay-perl (1.38-1) ... Setting up libtie-ixhash-perl (1.23-1) ... Setting up libtree-dagnode-perl (1.22-1) ... Setting up libtype-tiny-xs-perl (0.010-1) ... Setting up libxml-sax-writer-perl (0.54-1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libyaml-perl (1.13-1) ... Setting up mafft (7.205-1) ... Setting up mustang (3.2.2-1) ... Setting up ncbi-blast+ (2.2.29-3) ... Setting up phyml (2:20120412-2) ... Setting up poa (2.0+20060928-3) ... Setting up prank (0.0.140110-1) ... Setting up primer3 (2.3.6-1) ... Setting up probalign (1.4-3) ... Setting up proda (1.0-8) ... Setting up psmisc (22.21-2) ... Setting up rename (0.20-3) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up rubygems-integration (1.8) ... Setting up libruby2.1:amd64 (2.1.5-2+deb8u3) ... Setting up ruby2.1 (2.1.5-2+deb8u3) ... Setting up ruby (1:2.1.5+deb8u2) ... Setting up samtools (0.1.19-1) ... Setting up shared-mime-info (1.3-1) ... Setting up sim4 (0.0.20121010-1) ... Setting up ssl-cert (1.0.35) ... Setting up t-coffee (11.00.8cbe486-1) ... Setting up tigr-glimmer (3.02-3) ... Setting up tm-align (20140601+dfsg-1) ... Setting up wise-data (2.4.1-17) ... Setting up wise (2.4.1-17) ... Setting up xdg-user-dirs (0.15-2) ... Setting up bowtie (1.1.1-2) ... Setting up libgd-perl (2.53-1+b1) ... Setting up libset-scalar-perl (1.29-1) ... Setting up lynx-cur (2.8.9dev1-2+deb8u1) ... Installing new version of config file /etc/lynx-cur/lynx.cfg ... Setting up lynx (2.8.9dev1-2+deb8u1) ... Setting up ttf-liberation (1.07.4-1) ... Setting up libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Setting up libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Setting up libgs9 (9.06~dfsg-2+deb8u6) ... Setting up ghostscript (9.06~dfsg-2+deb8u6) ... Setting up libwww-perl (6.08-1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... apache2_invoke perl: already enabled invoke-rc.d: policy-rc.d denied execution of restart. Setting up libapache2-reload-perl (0.12-3) ... Setting up libxml-parser-perl (2.41-3) ... Setting up libsoap-lite-perl (1.11-1) ... Setting up libapache-dbi-perl (1.12-1) ... Setting up libxml-twig-perl (1:3.48-1) ... Setting up libgraphviz-perl (2.16-1) ... Setting up libxmlrpc-lite-perl (0.717-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for systemd (215-17+deb8u7) ... 2m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', '-yf', 'dist-upgrade'] 2m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m19.5s DUMP: 25132ed99e8549297ce3c8ebf4f536e8 - 2m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'show', 'libbio-chado-schema-perl'] 2m19.5s DUMP: Package: libbio-chado-schema-perl Version: 0.20000-1 Installed-Size: 957 Maintainer: Debian Perl Group Architecture: all Depends: perl, libbio-perl-perl, libcarp-clan-perl, libdbix-class-perl, libdbix-class-tree-nestedset-perl Description-en: DBIx::Class layer for the Chado database schema The module Bio::Chado::Schema is a standard object-relational mapping layer for use with the GMOD Chado database schema. Chado is an open-source modular database schema for biological data. Description-md5: e8df152f1b4935a6a1886485ca1aa0f3 Homepage: http://search.cpan.org/dist/Bio-Chado-Schema/ Tag: devel::lang:perl, devel::library, implemented-in::perl Section: perl Priority: optional Filename: pool/main/libb/libbio-chado-schema-perl/libbio-chado-schema-perl_0.20000-1_all.deb Size: 118462 MD5sum: fa5510424394b388e447ccfd065294c0 SHA1: 6b05e10475586ba2bdd2b034574548c14f1fa64d SHA256: e76a4345c150a6ff6ffff794183d2c91986bf95c067757924ee5bb270172b0ed 2m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'show', 'libbio-chado-schema-perl'] 2m19.5s INFO: apt-cache knows about the following packages: libbio-chado-schema-perl 2m19.5s INFO: Running scripts pre_install 2m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_database-server'] 2m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_database-server'] 2m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_exceptions'] 2m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_exceptions'] 2m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_extras'] 2m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_extras'] 2m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_foreign_architecture'] 2m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_foreign_architecture'] 2m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'policy'] 2m19.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ jessie/main Translation-en 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages release v=8.10,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 2m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'policy'] 2m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'policy', 'libbio-chado-schema-perl'] 2m19.6s DUMP: libbio-chado-schema-perl: Installed: 0.20000-1 Candidate: 0.20000-1 Version table: *** 0.20000-1 0 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 2m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'policy', 'libbio-chado-schema-perl'] 2m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', '-y', 'install', 'libbio-chado-schema-perl'] 2m19.9s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-chado-schema-perl is already the newest version. The following packages were automatically installed and are no longer required: apache2.2-bin apache2.2-common libcdt4 libcgraph5 libclass-base-perl libclass-data-inheritable-perl libclass-isa-perl libdata-compare-perl libffi5 libfile-find-rule-perl libgcrypt11 libgd2-xpm libgnutls26 libgraph4 libgvpr1 libjpeg8 libnumber-compare-perl libpango1.0-0 libprocps0 libruby1.9.1 libswitch-perl libsystemd-login0 libtasn1-3 libtext-glob-perl libtiff4 ruby1.9.1 ttf-dejavu-core ttf-liberation Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', '-y', 'install', 'libbio-chado-schema-perl'] 2m19.9s INFO: Running scripts post_install 2m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_install_exceptions'] 2m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_install_exceptions'] 2m19.9s INFO: Running scripts post_distupgrade 2m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_distupgrade_exceptions'] 2m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_distupgrade_exceptions'] 2m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_distupgrade_zz_backports'] 2m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_distupgrade_zz_backports'] 2m20.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 2m21.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 2m21.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 2m23.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 2m23.3s INFO: Running scripts pre_install 2m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_database-server'] 2m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_database-server'] 2m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_exceptions'] 2m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_exceptions'] 2m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_extras'] 2m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_extras'] 2m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_foreign_architecture'] 2m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_foreign_architecture'] 2m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'policy'] 2m23.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ jessie/main Translation-en 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages release v=8.10,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 2m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'policy'] 2m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'policy', 'libbio-chado-schema-perl'] 2m23.4s DUMP: libbio-chado-schema-perl: Installed: 0.20000-1 Candidate: 0.20000-1 Version table: *** 0.20000-1 0 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 2m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-cache', 'policy', 'libbio-chado-schema-perl'] 2m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', '-y', 'install', 'libbio-chado-schema-perl=0.20000-1'] 2m23.7s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-chado-schema-perl is already the newest version. The following packages were automatically installed and are no longer required: apache2.2-bin apache2.2-common libcdt4 libcgraph5 libclass-base-perl libclass-data-inheritable-perl libclass-isa-perl libdata-compare-perl libffi5 libfile-find-rule-perl libgcrypt11 libgd2-xpm libgnutls26 libgraph4 libgvpr1 libjpeg8 libnumber-compare-perl libpango1.0-0 libprocps0 libruby1.9.1 libswitch-perl libsystemd-login0 libtasn1-3 libtext-glob-perl libtiff4 ruby1.9.1 ttf-dejavu-core ttf-liberation Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', '-y', 'install', 'libbio-chado-schema-perl=0.20000-1'] 2m23.7s INFO: Running scripts post_install 2m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_install_exceptions'] 2m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_install_exceptions'] 2m23.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 2m25.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 2m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m25.8s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed amap-align amap-align 2.2-4 install ok installed apache2 apache2 2.4.10-10+deb8u11 install ok installed apache2-bin apache2-bin 2.4.10-10+deb8u11 install ok installed apache2-data apache2-data 2.4.10-10+deb8u11 install ok installed apache2-mpm-worker apache2-mpm-worker 2.4.10-10+deb8u11 install ok installed apache2-utils apache2-utils 2.4.10-10+deb8u11 install ok installed apache2.2-bin apache2.2-bin 2.4.10-10+deb8u11 install ok installed apache2.2-common apache2.2-common 2.4.10-10+deb8u11 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u10 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bedtools bedtools 2.21.0-1 install ok installed bioperl bioperl 1.6.924-1 install ok installed bioperl-run bioperl-run 1.6.9-2 install ok installed blast2 blast2 1:2.2.26.20120620-8 install ok installed bowtie bowtie 1.1.1-2 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed bwa bwa 0.7.10-1 install ok installed ca-certificates ca-certificates 20141019+deb8u3 install ok installed clustalo clustalo 1.2.1-1 install ok installed clustalw clustalw 2.1+lgpl-4 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed dbus dbus 1.8.22-0+deb8u1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed dialign dialign 2.2.1-7 install ok installed dialign-tx dialign-tx 1.0.2-7 install ok installed dialign-tx-data dialign-tx-data 1.0.2-7 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed emboss emboss 6.6.0+dfsg-1 install ok installed emboss-data emboss-data 6.6.0+dfsg-1 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-1 install ok installed exonerate exonerate 2.2.0-6 install ok installed file file 1:5.22+15-2+deb8u3 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fontconfig fontconfig 2.11.0-6.3+deb8u1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed fonts-droid fonts-droid 1:4.4.4r2-6 install ok installed fonts-liberation fonts-liberation 1.07.4-1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10 install ok installed ghostscript ghostscript 9.06~dfsg-2+deb8u6 install ok installed gnupg gnupg 1.4.18-7+deb8u4 install ok installed gpgv gpgv 1.4.18-7+deb8u4 install ok installed graphviz graphviz 2.38.0-7 install ok installed grep grep 2.20-4.1 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.2 install ok installed gzip gzip 1.6-4 install ok installed hmmer hmmer 3.1b1-3 install ok installed hostname hostname 3.15 install ok installed ifupdown ifupdown 0.7.53.1 install ok installed infernal infernal 1.1.1-2 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed iproute iproute 1:3.16.0-2 install ok installed iproute2 iproute2 3.16.0-2 install ok installed isc-dhcp-client isc-dhcp-client 4.3.1-6+deb8u2 install ok installed isc-dhcp-common isc-dhcp-common 4.3.1-6+deb8u2 install ok installed javascript-common javascript-common 11 install ok installed kalign kalign 1:2.03+20110620-2 install ok installed krb5-locales krb5-locales 1.12.1+dfsg-19+deb8u4 install ok installed libace-perl libace-perl 1.92-3+b1 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.09-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.02-3 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-3+b1 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-2 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-1 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.9~1624218-2+deb8u2 install ok installed libapache2-reload-perl libapache2-reload-perl 0.12-3 install ok installed libappconfig-perl libappconfig-perl 1.66-1 install ok installed libapr1:amd64 libapr1 1.5.1-3 install ok installed libaprutil1:amd64 libaprutil1 1.5.4-1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.5.4-1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.5.4-1 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libarchive-extract-perl libarchive-extract-perl 0.72-1 install ok installed libargtable2-0 libargtable2-0 12-1.1 install ok installed libarray-compare-perl libarray-compare-perl 2.11-1 install ok installed libatm1:amd64 libatm1 1:2.5.1-1.5 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.31-5 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.31-5 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.31-5 install ok installed libb-hooks-endofscope-perl libb-hooks-endofscope-perl 0.13-1 install ok installed libb-hooks-op-check-perl libb-hooks-op-check-perl 0.19-2+b1 install ok installed libbareword-filehandles-perl libbareword-filehandles-perl 0.003-1+b2 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.700-1 install ok installed libbio-chado-schema-perl libbio-chado-schema-perl 0.20000-1 install ok installed libbio-perl-perl libbio-perl-perl 1.6.924-1 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.6.9-2 install ok installed libbit-vector-perl libbit-vector-perl 7.3-1+b2 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2907-1+b2 install ok installed libbsd0:amd64 libbsd0 0.7.0-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcache-cache-perl libcache-cache-perl 1.07-2 install ok installed libcairo2:amd64 libcairo2 1.14.0-2.1+deb8u2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.4-2 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcarp-clan-perl libcarp-clan-perl 6.04-1 install ok installed libcdt4 libcdt4 2.26.3-14+deb7u2 install ok installed libcdt5 libcdt5 2.38.0-7 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.04-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.09-1 install ok installed libcgraph5 libcgraph5 2.26.3-14+deb7u2 install ok installed libcgraph6 libcgraph6 2.38.0-7 install ok installed libclass-accessor-chained-perl libclass-accessor-chained-perl 0.01.1~debian-2.1 install ok installed libclass-accessor-grouped-perl libclass-accessor-grouped-perl 0.10012-1 install ok installed libclass-accessor-perl libclass-accessor-perl 0.34-1 install ok installed libclass-base-perl libclass-base-perl 0.05-1 install ok installed libclass-c3-componentised-perl libclass-c3-componentised-perl 1.001000-1 install ok installed libclass-c3-perl libclass-c3-perl 0.26-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.13-2+b1 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-2 install ok installed libclass-inspector-perl libclass-inspector-perl 1.28-1 install ok installed libclass-isa-perl libclass-isa-perl 0.36-5 install ok installed libclass-load-perl libclass-load-perl 0.22-1 install ok installed libclass-load-xs-perl libclass-load-xs-perl 0.08-1+b1 install ok installed libclass-makemethods-perl libclass-makemethods-perl 1.01-4 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.11-1 install ok installed libclass-tiny-perl libclass-tiny-perl 1.000-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-2+b4 install ok installed libclone-perl libclone-perl 0.37-1+b1 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcommon-sense-perl libcommon-sense-perl 3.73-2+b3 install ok installed libconfig-any-perl libconfig-any-perl 0.24-1 install ok installed libconfig-general-perl libconfig-general-perl 2.56-1 install ok installed libconfig-tiny-perl libconfig-tiny-perl 2.20-1 install ok installed libcontext-preserve-perl libcontext-preserve-perl 0.01-1 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.76-3+b2 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.123-2 install ok installed libcpan-meta-perl libcpan-meta-perl 2.142690-1 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-2 install ok installed libcrypt-ssleay-perl libcrypt-ssleay-perl 0.58-1+b2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libcups2:amd64 libcups2 1.7.5-11+deb8u2 install ok installed libcupsfilters1:amd64 libcupsfilters1 1.0.61-5+deb8u3 install ok installed libcupsimage2:amd64 libcupsimage2 1.7.5-11+deb8u2 install ok installed libdata-compare-perl libdata-compare-perl 1.23-0.1 install ok installed libdata-dumper-concise-perl libdata-dumper-concise-perl 2.022-1 install ok installed libdata-optlist-perl libdata-optlist-perl 0.109-1 install ok installed libdata-page-perl libdata-page-perl 2.02-1 install ok installed libdata-section-perl libdata-section-perl 0.200006-1 install ok installed libdata-stag-perl libdata-stag-perl 0.13-1 install ok installed libdate-calc-perl libdate-calc-perl 6.3-2 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.3-2 install ok installed libdate-manip-perl libdate-manip-perl 6.47-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.8-1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdbd-mysql-perl libdbd-mysql-perl 4.028-2+deb8u2 install ok installed libdbd-pg-perl libdbd-pg-perl 3.4.2-1 install ok installed libdbd-sqlite3-perl libdbd-sqlite3-perl 1.44-1 install ok installed libdbi-perl libdbi-perl 1.631-3+b1 install ok installed libdbicx-testdatabase-perl libdbicx-testdatabase-perl 0.05-1 install ok installed libdbix-class-perl libdbix-class-perl 0.082810-2 install ok installed libdbix-class-tree-nestedset-perl libdbix-class-tree-nestedset-perl 0.10-1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.8.22-0+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevel-argnames-perl libdevel-argnames-perl 0.03-1 install ok installed libdevel-caller-perl libdevel-caller-perl 2.06-1+b2 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.13-1 install ok installed libdevel-lexalias-perl libdevel-lexalias-perl 0.05-1+b2 install ok installed libdevel-partialdump-perl libdevel-partialdump-perl 0.17-1 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 1.3400-1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.12-1 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1 install ok installed libdist-checkconflicts-perl libdist-checkconflicts-perl 0.11-1 install ok installed libdns-export100 libdns-export100 1:9.9.5.dfsg-9+deb8u14 install ok installed libencode-locale-perl libencode-locale-perl 1.03-1 install ok installed liberror-perl liberror-perl 0.17-1.1 install ok installed libeval-closure-perl libeval-closure-perl 0.11-1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u4 install ok installed libexporter-tiny-perl libexporter-tiny-perl 0.038-2 install ok installed libfcgi-perl libfcgi-perl 0.77-1+deb8u1 install ok installed libffi5:amd64 libffi5 3.0.10-3 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.33-1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-sharedir-perl libfile-sharedir-perl 1.102-1 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.003-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u2 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10 install ok installed libgcrypt11:amd64 libgcrypt11 1.5.0-5+deb7u4 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgd-perl libgd-perl 2.53-1+b1 install ok installed libgd2-xpm:amd64 libgd2-xpm 2.0.36~rc1~dfsg-6.1+deb7u2 install ok installed libgd3:amd64 libgd3 2.1.0-5+deb8u11 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-13.1 install ok installed libgetopt-long-descriptive-perl libgetopt-long-descriptive-perl 0.097-1 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.42.1-1+b1 install ok installed libglib2.0-data libglib2.0-data 2.42.1-1 install ok installed libgmp10:amd64 libgmp10 2:6.0.0+dfsg-6 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgnutls26:amd64 libgnutls26 2.12.20-8+deb7u5 install ok installed libgomp1:amd64 libgomp1 4.9.2-10 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libgpm2:amd64 libgpm2 1.20.4-6.1+b2 install ok installed libgraph-perl libgraph-perl 1:0.96-1.1 install ok installed libgraph4 libgraph4 2.26.3-14+deb7u2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1~deb8u1 install ok installed libgraphviz-perl libgraphviz-perl 2.16-1 install ok installed libgs9 libgs9 9.06~dfsg-2+deb8u6 install ok installed libgs9-common libgs9-common 9.06~dfsg-2+deb8u6 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.12.1+dfsg-19+deb8u4 deinstall ok config-files libgvc5 libgvc5 2.26.3-14+deb7u2 install ok installed libgvc6 libgvc6 2.38.0-7 install ok installed libgvpr1 libgvpr1 2.26.3-14+deb7u2 install ok installed libgvpr2 libgvpr2 2.38.0-7 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 0.9.35-2 install ok installed libhash-merge-perl libhash-merge-perl 0.200-1 install ok installed libheap-perl libheap-perl 0.80-2 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhpdf-2.2.1 libhpdf-2.2.1 2.2.1-1.1 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.11-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.71-1+b3 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.11-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-2 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.06-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libice6:amd64 libice6 2:1.0.9-1+b1 install ok installed libidn11:amd64 libidn11 1.29-1+deb8u2 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-10 install ok installed libimport-into-perl libimport-into-perl 1.002004-1 install ok installed libindirect-perl libindirect-perl 0.33-1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1+b4 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ip-perl libio-socket-ip-perl 0.32-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.002-2+deb8u3 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libio-stringy-perl libio-stringy-perl 2.110-5 install ok installed libipc-run-perl libipc-run-perl 0.92-1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-3+b2 install ok installed libirs-export91 libirs-export91 1:9.9.5.dfsg-9+deb8u14 install ok installed libisc-export95 libisc-export95 1:9.9.5.dfsg-9+deb8u14 install ok installed libisccfg-export90 libisccfg-export90 1:9.9.5.dfsg-9+deb8u14 install ok installed libjasper1:amd64 libjasper1 1.900.1-debian1-2.4+deb8u3 install ok installed libjbig0:amd64 libjbig0 2.1-3.1 install ok installed libjbig2dec0 libjbig2dec0 0.13-4~deb8u2 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.3.1-12 install ok installed libjpeg8:amd64 libjpeg8 8d-1+deb7u1 install ok installed libjs-jquery libjs-jquery 1.7.2+dfsg-3.2 install ok installed libjson-perl libjson-perl 2.61-1 install ok installed libjson-xs-perl libjson-xs-perl 2.340-1+b2 install ok installed libk5crypto3:amd64 libk5crypto3 1.12.1+dfsg-19+deb8u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-5+b1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.12.1+dfsg-19+deb8u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.12.1+dfsg-19+deb8u4 install ok installed liblcms2-2:amd64 liblcms2-2 2.6-3+deb8u1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.40+dfsg-1+deb8u3 install ok installed liblexical-sealrequirehints-perl liblexical-sealrequirehints-perl 0.007-1+b2 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.33-2+b1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblog-message-perl liblog-message-perl 0.8-1 install ok installed liblog-message-simple-perl liblog-message-simple-perl 0.10-2 install ok installed libltdl7:amd64 libltdl7 2.4.2-1.11+b1 install ok installed liblua5.1-0:amd64 liblua5.1-0 5.1.5-7.1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmagic1:amd64 libmagic1 1:5.22+15-2+deb8u3 install ok installed libmailtools-perl libmailtools-perl 2.13-1 install ok installed libmath-derivative-perl libmath-derivative-perl 0.01-6 install ok installed libmath-spline-perl libmath-spline-perl 0.02-1 install ok installed libmime-tools-perl libmime-tools-perl 5.505-1 install ok installed libmldbm-perl libmldbm-perl 2.05-1 install ok installed libmodule-build-perl libmodule-build-perl 0.421000-2+deb8u1 install ok installed libmodule-find-perl libmodule-find-perl 0.12-1 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-1 install ok installed libmodule-pluggable-perl libmodule-pluggable-perl 5.1-1 install ok installed libmodule-runtime-conflicts-perl libmodule-runtime-conflicts-perl 0.001-1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.014-1 install ok installed libmodule-signature-perl libmodule-signature-perl 0.73-1+deb8u2 install ok installed libmoo-perl libmoo-perl 1.006001-1 install ok installed libmoose-perl libmoose-perl 2.1213-1 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libmro-compat-perl libmro-compat-perl 0.12-1 install ok installed libmultidimensional-perl libmultidimensional-perl 0.010-1+b2 install ok installed libmysqlclient18:amd64 libmysqlclient18 5.5.58-0+deb8u1 install ok installed libnamespace-clean-perl libnamespace-clean-perl 0.25-1 install ok installed libncbi6:amd64 libncbi6 6.1.20120620-8 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u2 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u2 install ok installed libnet-http-perl libnet-http-perl 6.07-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.01-3 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.65-1+deb8u1 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-1 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.19-1 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b1 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.20.7-1 install ok installed libpackage-constants-perl libpackage-constants-perl 0.04-1 install ok installed libpackage-deprecationmanager-perl libpackage-deprecationmanager-perl 0.13-1 install ok installed libpackage-stash-perl libpackage-stash-perl 0.37-1 install ok installed libpackage-stash-xs-perl libpackage-stash-xs-perl 0.28-2+b1 install ok installed libpackage-variant-perl libpackage-variant-perl 1.002002-3 install ok installed libpadwalker-perl libpadwalker-perl 1.98-1+b1 install ok installed libpam-cap:amd64 libpam-cap 1:2.24-8 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam-systemd:amd64 libpam-systemd 215-17+deb8u7 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.36.8-3 install ok installed libpango1.0-0:amd64 libpango1.0-0 1.36.8-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.36.8-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.36.8-3 install ok installed libpangox-1.0-0:amd64 libpangox-1.0-0 0.0.2-5 install ok installed libpangoxft-1.0-0:amd64 libpangoxft-1.0-0 1.36.8-3 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu4 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu4 install ok installed libparams-classify-perl libparams-classify-perl 0.013-4+b2 install ok installed libparams-util-perl libparams-util-perl 1.07-2+b1 install ok installed libparams-validate-perl libparams-validate-perl 1.13-1+b1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967009+dfsg-1 install ok installed libpath-class-perl libpath-class-perl 0.35-1 install ok installed libpathplan4 libpathplan4 2.38.0-7 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libperl5.20 libperl5.20 5.20.2-3+deb8u9 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.32.6-3 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libpod-latex-perl libpod-latex-perl 0.61-1 install ok installed libpod-readme-perl libpod-readme-perl 0.11-1 install ok installed libpostscript-perl libpostscript-perl 0.06-2 install ok installed libpq5:amd64 libpq5 9.4.15-0+deb8u1 install ok installed libprocps0:amd64 libprocps0 1:3.3.3-3 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.9-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.9-2+deb8u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.9-2+deb8u1 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libreadonly-perl libreadonly-perl 2.000-1 install ok installed libreadonly-xs-perl libreadonly-xs-perl 1.05-1+b1 install ok installed libregexp-common-perl libregexp-common-perl 2013031301-1 install ok installed librole-tiny-perl librole-tiny-perl 1.003004-1 install ok installed libruby1.9.1 libruby1.9.1 1.9.3.194-8.1+deb7u5 install ok installed libruby2.1:amd64 libruby2.1 2.1.5-2+deb8u3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.26.dfsg1-13+deb8u1 install ok installed libscope-guard-perl libscope-guard-perl 0.20-1 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libset-scalar-perl libset-scalar-perl 1.29-1 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsoap-lite-perl libsoap-lite-perl 1.11-1 install ok installed libsocket-perl libsocket-perl 2.016-1 install ok installed libsoftware-license-perl libsoftware-license-perl 0.103010-3 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-1 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1 install ok installed libsql-abstract-perl libsql-abstract-perl 1.81-1 install ok installed libsql-translator-perl libsql-translator-perl 0.11020-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u2 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u7 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0607-1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10 install ok installed libstrictures-perl libstrictures-perl 1.005005-1 install ok installed libsub-exporter-perl libsub-exporter-perl 0.986-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001011-1 install ok installed libsub-identify-perl libsub-identify-perl 0.08-1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsub-name-perl libsub-name-perl 0.12-1 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-2 install ok installed libsvg-perl libsvg-perl 2.59-1 install ok installed libswitch-perl libswitch-perl 2.17-2 install ok installed libsystemd-login0:amd64 libsystemd-login0 215-17+deb8u7 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtask-weaken-perl libtask-weaken-perl 1.04-1 install ok installed libtasn1-3:amd64 libtasn1-3 2.13-2+deb7u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.2-3+deb8u3 install ok installed libtemplate-perl libtemplate-perl 2.24-1.2+b1 install ok installed libterm-ui-perl libterm-ui-perl 0.42-1 install ok installed libtext-autoformat-perl libtext-autoformat-perl 1.669006-1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-glob-perl libtext-glob-perl 0.09-1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-recordparser-perl libtext-recordparser-perl 1.6.3-1 install ok installed libtext-reform-perl libtext-reform-perl 1.20-1 install ok installed libtext-soundex-perl libtext-soundex-perl 3.4-1+b2 install ok installed libtext-tabulardisplay-perl libtext-tabulardisplay-perl 1.38-1 install ok installed libtext-template-perl libtext-template-perl 1.46-1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libthai-data libthai-data 0.1.21-1 install ok installed libthai0:amd64 libthai0 0.1.21-1 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-1 install ok installed libtiff4:amd64 libtiff4 3.9.6-11 install ok installed libtiff5:amd64 libtiff5 4.0.3-12.3+deb8u4 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u2 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.22-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.22-1 install ok installed libtype-tiny-perl libtype-tiny-perl 1.000004-1 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.010-1 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libunicode-map-perl libunicode-map-perl 0.112-11+b1 install ok installed liburi-perl liburi-perl 1.64-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libvariable-magic-perl libvariable-magic-perl 0.55-1 install ok installed libvpx1:amd64 libvpx1 1.3.0-3 install ok installed libwww-perl libwww-perl 6.08-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u1 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.12-2+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.10-3+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.10-3+b1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+b1 install ok installed libxdot4 libxdot4 2.38.0-7 install ok installed libxext6:amd64 libxext6 2:1.3.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-1 install ok installed libxml-dom-perl libxml-dom-perl 1.44-1 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-1 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-5 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0116+dfsg-1+deb8u2 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.92-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.11-1 install ok installed libxml-parser-perl libxml-parser-perl 2.41-3 install ok installed libxml-perl libxml-perl 0.08-2 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.07-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.40-2 install ok installed libxml-sax-perl libxml-sax-perl 0.99+dfsg-2 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.54-1 install ok installed libxml-simple-perl libxml-simple-perl 2.20-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.48-1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.13-7 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.13-1 install ok installed libxml2:amd64 libxml2 2.9.1+dfsg1-5+deb8u5 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-1 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-0+deb8u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.8-1+b1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.28-2+deb8u3 install ok installed libxt6:amd64 libxt6 1:1.1.4-1+b1 install ok installed libxtables10 libxtables10 1.4.21-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.1.6-3 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.41-6 install ok installed libyaml-perl libyaml-perl 1.13-1 install ok installed libyaml-syck-perl libyaml-syck-perl 1.27-2+b2 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed lynx lynx 2.8.9dev1-2+deb8u1 install ok installed lynx-cur lynx-cur 2.8.9dev1-2+deb8u1 install ok installed mafft mafft 7.205-1 install ok installed maq maq 0.7.1-5 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.58 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed muscle muscle 1:3.8.31-1 install ok installed mustang mustang 3.2.2-1 install ok installed mysql-common mysql-common 5.5.58-0+deb8u1 install ok installed ncbi-blast+ ncbi-blast+ 2.2.29-3 install ok installed ncbi-data ncbi-data 6.1.20120620-8 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u2 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u2 install ok installed netbase netbase 5.3 install ok installed openssl openssl 1.0.1t-1+deb8u7 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl perl 5.20.2-3+deb8u9 install ok installed perl-base perl-base 5.20.2-3+deb8u9 install ok installed perl-doc perl-doc 5.20.2-3+deb8u9 install ok installed perl-modules perl-modules 5.20.2-3+deb8u9 install ok installed perl-tk perl-tk 1:804.032-3+b3 install ok installed phyml phyml 2:20120412-2 install ok installed poa poa 2.0+20060928-3 install ok installed poppler-data poppler-data 0.4.7-1 install ok installed prank prank 0.0.140110-1 install ok installed primer3 primer3 2.3.6-1 install ok installed probalign probalign 1.4-3 install ok installed probcons probcons 1.12-9 install ok installed procps procps 2:3.3.9-9 install ok installed proda proda 1.0-8 install ok installed psmisc psmisc 22.21-2 install ok installed python python 2.7.9-1 install ok installed python-minimal python-minimal 2.7.9-1 install ok installed python2.7 python2.7 2.7.9-2+deb8u1 install ok installed python2.7-minimal python2.7-minimal 2.7.9-2+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed rename rename 0.20-3 install ok installed ruby ruby 1:2.1.5+deb8u2 install ok installed ruby1.9.1 ruby1.9.1 1.9.3.194-8.1+deb7u5 install ok installed ruby2.1 ruby2.1 2.1.5-2+deb8u3 install ok installed rubygems-integration rubygems-integration 1.8 install ok installed samtools samtools 0.1.19-1 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9 install ok installed sgml-base sgml-base 1.26+nmu4 install ok installed shared-mime-info shared-mime-info 1.3-1 install ok installed sim4 sim4 0.0.20121010-1 install ok installed ssl-cert ssl-cert 1.0.35 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit sysvinit 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed t-coffee t-coffee 11.00.8cbe486-1 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tigr-glimmer tigr-glimmer 3.02-3 install ok installed tm-align tm-align 20140601+dfsg-1 install ok installed ttf-dejavu-core ttf-dejavu-core 2.34-1 install ok installed ttf-liberation ttf-liberation 1.07.4-1 install ok installed tzdata tzdata 2017c-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed wise wise 2.4.1-17 install ok installed wise-data wise-data 2.4.1-17 install ok installed x11-common x11-common 1:7.7+7 install ok installed xdg-user-dirs xdg-user-dirs 0.15-2 install ok installed xml-core xml-core 0.13+nmu2 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2+b3 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 2m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m27.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', '-ac', '--ignore-obsolete'] 2m31.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', '-ac', '--ignore-obsolete'] 2m31.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m31.0s DUMP: 0.15.1 2m31.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m31.0s INFO: Running adequate version 0.15.1 now. 2m31.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'libbio-chado-schema-perl'] 2m31.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'libbio-chado-schema-perl'] 2m31.1s INFO: Running scripts pre_remove 2m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_remove_exceptions'] 2m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/pre_remove_exceptions'] 2m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', 'remove', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libyaml-perl', 'emboss', 'libpangoxft-1.0-0:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libmro-compat-perl', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libfile-listing-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'kalign', 'libxml-sax-perl', 'libprocps0:amd64', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'ruby1.9.1', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libgraph4', 'libfile-find-rule-perl', 'libgd3:amd64', 'libxext6:amd64', 'libhtml-format-perl', 'libeval-closure-perl', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'python-minimal', 'libxft2:amd64', 'bwa', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libcupsimage2:amd64', 'libnamespace-clean-perl', 'libdigest-perl-md5-perl', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'ttf-liberation', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libfile-slurp-tiny-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libsql-translator-perl', 'libtext-tabulardisplay-perl', 'libpixman-1-0:amd64', 'proda', 'bedtools', 'libfile-sharedir-perl', 'primer3', 'libtext-autoformat-perl', 'libsocket-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libmodule-runtime-perl', 'maq', 'libxslt1.1:amd64', 'libjbig2dec0', 'libmysqlclient18:amd64', 'libidn11:amd64', 'libxml-libxslt-perl', 'libtext-recordparser-perl', 'libjcode-pm-perl', 'libkrb5support0:amd64', 'libmoose-perl', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libscope-guard-perl', 'libmodule-runtime-conflicts-perl', 'libjs-jquery', 'libconfig-any-perl', 'libheap-perl', 'libbio-asn1-entrezgene-perl', 'libgmp10:amd64', 't-coffee', 'libnettle4:amd64', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'libp11-kit0:amd64', 'libyaml-libyaml-perl', 'libsoftware-license-perl', 'libpackage-stash-perl', 'libgomp1:amd64', 'libthai0:amd64', 'libxml-writer-perl', 'hmmer', 'libmagic1:amd64', 'libwww-perl', 'libclass-accessor-perl', 'apache2-mpm-worker', 'apache2.2-common', 'libcontext-preserve-perl', 'libmath-derivative-perl', 'libdevel-stacktrace-perl', 'libxml-sax-base-perl', 'libreadonly-perl', 'libsasl2-modules-db:amd64', 'poppler-data', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'dialign-tx-data', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'libxml-dom-perl', 'openssl', 'fontconfig-config', 'libconfig-general-perl', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libclass-accessor-grouped-perl', 'libmultidimensional-perl', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'libalgorithm-munkres-perl', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'ncbi-blast+', 'libdata-page-perl', 'clustalw', 'libncbi6:amd64', 'libgvpr1', 'libgvpr2', 'libisccfg-export90', 'phyml', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'libsql-abstract-perl', 'libapache2-mod-perl2', 'libpackage-deprecationmanager-perl', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'fonts-liberation', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libxau6:amd64', 'libclass-load-perl', 'iproute2', 'krb5-locales', 'exonerate', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libcommon-sense-perl', 'libparams-util-perl', 'iproute', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'apache2.2-bin', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libyaml-0-2:amd64', 'libgdbm3:amd64', 'fontconfig', 'libace-perl', 'infernal', 'libclass-c3-xs-perl', 'libtext-glob-perl', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libbsd0:amd64', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'mafft', 'libclass-makemethods-perl', 'apache2-utils', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'libjpeg8:amd64', 'libtype-tiny-xs-perl', 'emboss-lib', 'libswitch-perl', 'libhttp-message-perl', 'libsub-exporter-perl', 'blast2', 'libio-sessiondata-perl', 'libparams-validate-perl', 'sgml-base', 'libhtml-parser-perl', 'libpod-readme-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libgnutls-deb0-28:amd64', 'libpangox-1.0-0:amd64', 'mime-support', 'libpango1.0-0:amd64', 'libdevel-argnames-perl', 'libgetopt-long-descriptive-perl', 'ncbi-data', 'libharfbuzz0b:amd64', 'perl-tk', 'libbit-vector-perl', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libsm6:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'libtext-reform-perl', 'libsub-identify-perl', 'libio-socket-ip-perl', 'libjson-perl', 'libpaper-utils', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libvariable-magic-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libreadonly-xs-perl', 'libxt6:amd64', 'libmath-spline-perl', 'libffi6:amd64', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libdata-compare-perl', 'libffi5:amd64', 'libindirect-perl', 'libxml-regexp-perl', 'libmodule-find-perl', 'samtools', 'libxtables10', 'libtiff4:amd64', 'probalign', 'libio-pty-perl', 'libpathplan4', 'libnumber-compare-perl', 'libpackage-variant-perl', 'libcrypt-rc4-perl', 'libcgraph6', 'libxaw7:amd64', 'libyaml-syck-perl', 'libcgraph5', 'libgvc5', 'libgvc6', 'libdbix-class-tree-nestedset-perl', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libxml-sax-expat-perl', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'libmailtools-perl', 'libappconfig-perl', 'libdist-checkconflicts-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'libxml-sax-writer-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'apache2-bin', 'libdbicx-testdatabase-perl', 'libsystemd-login0:amd64', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'shared-mime-info', 'libxml2:amd64', 'libsoap-lite-perl', 'libx11-6:amd64', 'libclass-accessor-chained-perl', 'libtree-dagnode-perl', 'tigr-glimmer', 'libclass-base-perl', 'mustang', 'libhash-merge-perl', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'libdata-dumper-concise-perl', 'libperl5.20', 'libparams-classify-perl', 'dialign-tx', 'libclass-tiny-perl', 'libxml-twig-perl', 'libxdmcp6:amd64', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libxml-parser-perl', 'libssl1.0.0:amd64', 'libregexp-common-perl', 'libclass-load-xs-perl', 'libgs9', 'libfreetype6:amd64', 'libxml-perl', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'libpath-class-perl', 'liblwp-protocol-https-perl', 'perl', 'libatm1:amd64', 'libclass-data-inheritable-perl', 'libhttp-daemon-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'netbase', 'libdbix-class-perl', 'libxrender1:amd64', 'libjbig0:amd64', 'libruby1.9.1', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-partialdump-perl', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libclass-c3-componentised-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libhttp-negotiate-perl', 'libunicode-map-perl', 'libaprutil1:amd64', 'file', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'libjson-xs-perl', 'emboss-data', 'libconfig-tiny-perl', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libtemplate-perl', 'libsvg-perl', 'libdevel-caller-perl', 'libbsd-resource-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'libsasl2-2:amd64', 'libcdt5', 'libcdt4', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl', 'libbio-chado-schema-perl'] 2m42.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libgvc5' is not installed, so not removed The following packages will be REMOVED: amap-align apache2 apache2-bin apache2-data apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalo clustalw dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid fonts-liberation ghostscript graphviz gsfonts hmmer ifupdown infernal iproute iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libappconfig-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libatm1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbareword-filehandles-perl libbio-asn1-entrezgene-perl libbio-chado-schema-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcarp-clan-perl libcdt4 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph5 libcgraph6 libclass-accessor-chained-perl libclass-accessor-grouped-perl libclass-accessor-perl libclass-base-perl libclass-c3-componentised-perl libclass-c3-perl libclass-c3-xs-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclass-makemethods-perl libclass-method-modifiers-perl libclass-tiny-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconfig-any-perl libconfig-general-perl libconfig-tiny-perl libcontext-preserve-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libdata-compare-perl libdata-dumper-concise-perl libdata-optlist-perl libdata-page-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdb5.1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbicx-testdatabase-perl libdbix-class-perl libdbix-class-tree-nestedset-perl libdevel-argnames-perl libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-partialdump-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdist-checkconflicts-perl libdns-export100 libencode-locale-perl liberror-perl libeval-closure-perl libexporter-tiny-perl libfcgi-perl libffi5 libffi6 libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgcrypt11 libgd-perl libgd2-xpm libgd3 libgdbm3 libgetopt-long-descriptive-perl libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls-deb0-28 libgnutls26 libgomp1 libgraph-perl libgraph4 libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgvc6 libgvpr1 libgvpr2 libharfbuzz0b libhash-merge-perl libheap-perl libhogweed2 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libijs-0.35 libimport-into-perl libindirect-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjpeg8 libjs-jquery libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblog-message-perl liblog-message-simple-perl libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-build-perl libmodule-find-perl libmodule-implementation-perl libmodule-pluggable-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmoose-perl libmro-compat-perl libmultidimensional-perl libmysqlclient18 libnamespace-clean-perl libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnumber-compare-perl libole-storage-lite-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpackage-variant-perl libpadwalker-perl libpango-1.0-0 libpango1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangox-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libpath-class-perl libpathplan4 libperl5.20 libpixman-1-0 libpng12-0 libpod-latex-perl libpod-readme-perl libpostscript-perl libpq5 libprocps0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadonly-perl libreadonly-xs-perl libregexp-common-perl librole-tiny-perl libruby1.9.1 libruby2.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libscope-guard-perl libset-scalar-perl libsm6 libsoap-lite-perl libsocket-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsql-abstract-perl libsql-translator-perl libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libswitch-perl libsystemd-login0 libtask-weaken-perl libtasn1-3 libtasn1-6 libtemplate-perl libterm-ui-perl libtext-autoformat-perl libtext-glob-perl libtext-recordparser-perl libtext-reform-perl libtext-soundex-perl libtext-tabulardisplay-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff4 libtiff5 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libunicode-map-perl liburi-perl libvariable-magic-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxtables10 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-syck-perl lynx lynx-cur mafft maq mime-support muscle mustang mysql-common ncbi-blast+ ncbi-data netbase openssl perl perl-doc perl-modules perl-tk phyml poa poppler-data prank primer3 probalign probcons proda python python-minimal python2.7 python2.7-minimal rename ruby ruby1.9.1 ruby2.1 rubygems-integration samtools sgml-base shared-mime-info sim4 ssl-cert t-coffee tigr-glimmer tm-align ttf-dejavu-core ttf-liberation wise wise-data x11-common xdg-user-dirs xml-core 0 upgraded, 0 newly installed, 446 to remove and 0 not upgraded. After this operation, 994 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 31154 files and directories currently installed.) Removing amap-align (2.2-4) ... Removing apache2.2-common (2.4.10-10+deb8u11) ... Removing apache2-mpm-worker (2.4.10-10+deb8u11) ... Removing apache2 (2.4.10-10+deb8u11) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing apache2.2-bin (2.4.10-10+deb8u11) ... Removing libapache2-reload-perl (0.12-3) ... Removing libapache-dbi-perl (1.12-1) ... Removing libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... Removing apache2-bin (2.4.10-10+deb8u11) ... Removing apache2-data (2.4.10-10+deb8u11) ... Removing apache2-utils (2.4.10-10+deb8u11) ... Removing bedtools (2.21.0-1) ... Removing bioperl-run (1.6.9-2) ... Removing bioperl (1.6.924-1) ... Removing blast2 (1:2.2.26.20120620-8) ... Removing bowtie (1.1.1-2) ... Removing bwa (0.7.10-1) ... Removing ruby (1:2.1.5+deb8u2) ... Removing ruby2.1 (2.1.5-2+deb8u3) ... Removing rubygems-integration (1.8) ... Removing libgraphviz-perl (2.16-1) ... Removing libxml-xpath-perl (1.13-7) ... Removing clustalo (1.2.1-1) ... Removing clustalw (2.1+lgpl-4) ... Removing dialign (2.2.1-7) ... Removing dialign-tx (1.0.2-7) ... Removing dialign-tx-data (1.0.2-7) ... Removing emboss (6.6.0+dfsg-1) ... Removing emboss-data (6.6.0+dfsg-1) ... Removing emboss-lib (6.6.0+dfsg-1) ... Removing exonerate (2.2.0-6) ... Removing file (1:5.22+15-2+deb8u3) ... Removing libpango1.0-0:amd64 (1.36.8-3) ... Removing libpangox-1.0-0:amd64 (0.0.2-5) ... Removing libpangoxft-1.0-0:amd64 (1.36.8-3) ... Removing libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Removing perl-tk (1:804.032-3+b3) ... Removing libxft2:amd64 (2.3.2-1) ... Removing ttf-dejavu-core (2.34-1) ... Removing fonts-dejavu-core (2.34-1) ... Removing fonts-droid (1:4.4.4r2-6) ... Removing ttf-liberation (1.07.4-1) ... Removing ghostscript (9.06~dfsg-2+deb8u6) ... Removing graphviz (2.38.0-7) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Removing hmmer (3.1b1-3) ... Removing ifupdown (0.7.53.1) ... Removing infernal (1.1.1-2) ... Removing iproute (1:3.16.0-2) ... Removing isc-dhcp-client (4.3.1-6+deb8u2) ... Removing iproute2 (3.16.0-2) ... Removing isc-dhcp-common (4.3.1-6+deb8u2) ... Removing javascript-common (11) ... Removing kalign (1:2.03+20110620-2) ... Removing krb5-locales (1.12.1+dfsg-19+deb8u4) ... Removing libace-perl (1.92-3+b1) ... Removing libmoose-perl (2.1213-1) ... Removing libsoftware-license-perl (0.103010-3) ... Removing libdata-section-perl (0.200006-1) ... Removing libbio-chado-schema-perl (0.20000-1) ... Removing libdbix-class-tree-nestedset-perl (0.10-1) ... Removing libdbix-class-perl (0.082810-2) ... Removing libclass-c3-componentised-perl (1.001000-1) ... Removing libalgorithm-diff-xs-perl (0.04-3+b1) ... Removing libalgorithm-diff-perl (1.19.02-3) ... Removing libalgorithm-munkres-perl (0.08-2) ... Removing libtemplate-perl (2.24-1.2+b1) ... Removing libappconfig-perl (1.66-1) ... Removing libaprutil1-ldap:amd64 (1.5.4-1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Removing libaprutil1:amd64 (1.5.4-1) ... Removing libapr1:amd64 (1.5.1-3) ... Removing libarchive-extract-perl (0.72-1) ... Removing libargtable2-0 (12-1.1) ... Removing libarray-compare-perl (2.11-1) ... Removing libatm1:amd64 (1:2.5.1-1.5) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing libgs9 (9.06~dfsg-2+deb8u6) ... Removing libdevel-partialdump-perl (0.17-1) ... Removing libclass-load-xs-perl (0.08-1+b1) ... Removing libclass-load-perl (0.22-1) ... Removing libnamespace-clean-perl (0.25-1) ... Removing libb-hooks-endofscope-perl (0.13-1) ... Removing libmultidimensional-perl (0.010-1+b2) ... Removing libbareword-filehandles-perl (0.003-1+b2) ... Removing libb-hooks-op-check-perl (0.19-2+b1) ... Removing libbio-asn1-entrezgene-perl (1.700-1) ... Removing libbio-perl-run-perl (1.6.9-2) ... Removing libbio-perl-perl (1.6.924-1) ... Removing libdate-calc-xs-perl (6.3-2) ... Removing libdate-calc-perl (6.3-2) ... Removing libbit-vector-perl (7.3-1+b2) ... Removing libbsd-resource-perl (1.2907-1+b2) ... Removing lynx (2.8.9dev1-2+deb8u1) ... Removing lynx-cur (2.8.9dev1-2+deb8u1) ... Removing libbsd0:amd64 (0.7.0-2) ... Removing libcache-cache-perl (1.07-2) ... Removing libgvc6 (2.38.0-7) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libdbicx-testdatabase-perl (0.05-1) ... Removing libsql-translator-perl (0.11020-1) ... Removing libcarp-clan-perl (6.04-1) ... Removing libgvpr1 (2.26.3-14+deb7u2) ... Removing libcgraph5 (2.26.3-14+deb7u2) ... Removing libgvpr2 (2.38.0-7) ... Removing libcgraph6 (2.38.0-7) ... Removing libcdt5 (2.38.0-7) ... Removing libcgi-fast-perl (1:2.04-1) ... Removing libcgi-pm-perl (4.09-1) ... Removing libdata-page-perl (2.02-1) ... Removing libclass-accessor-chained-perl (0.01.1~debian-2.1) ... Removing libclass-accessor-grouped-perl (0.10012-1) ... Removing libtext-recordparser-perl (1.6.3-1) ... Removing libclass-accessor-perl (0.34-1) ... Removing libclass-base-perl (0.05-1) ... Removing libclass-c3-xs-perl (0.13-2+b1) ... Removing libclass-data-inheritable-perl (0.08-2) ... Removing libxmlrpc-lite-perl (0.717-1) ... Removing libsoap-lite-perl (1.11-1) ... Removing libfile-sharedir-perl (1.102-1) ... Removing libclass-inspector-perl (1.28-1) ... Removing libclass-isa-perl (0.36-5) ... Removing libclass-makemethods-perl (1.01-4) ... Removing libsql-abstract-perl (1.81-1) ... Removing libmoo-perl (1.006001-1) ... Removing librole-tiny-perl (1.003004-1) ... Removing libclass-method-modifiers-perl (2.11-1) ... Removing libclass-tiny-perl (1.000-1) ... Removing libclass-xsaccessor-perl (1.19-2+b4) ... Removing libhash-merge-perl (0.200-1) ... Removing libclone-perl (0.37-1+b1) ... Removing libjson-xs-perl (2.340-1+b2) ... Removing libcommon-sense-perl (3.73-2+b3) ... Removing libconfig-any-perl (0.24-1) ... Removing libconfig-general-perl (2.56-1) ... Removing libconfig-tiny-perl (2.20-1) ... Removing libcontext-preserve-perl (0.01-1) ... Removing libconvert-binary-c-perl (0.76-3+b2) ... Removing libmime-tools-perl (5.505-1) ... Removing libconvert-binhex-perl (1.123-2) ... Removing libmodule-build-perl (0.421000-2+deb8u1) ... Removing 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Removing 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Removing libcpan-meta-perl (2.142690-1) ... Removing libspreadsheet-parseexcel-perl (0.6500-1) ... Removing libcrypt-rc4-perl (2.02-2) ... Removing libcrypt-ssleay-perl (0.58-1+b2) ... Removing libdata-compare-perl (1.23-0.1) ... Removing libdata-dumper-concise-perl (2.022-1) ... Removing libgetopt-long-descriptive-perl (0.097-1) ... Removing libeval-closure-perl (0.11-1) ... Removing libsub-exporter-perl (0.986-1) ... Removing libdata-optlist-perl (0.109-1) ... Removing libdata-stag-perl (0.13-1) ... Removing libdate-manip-perl (6.47-1) ... Removing libdb5.1:amd64 (5.1.29-5) ... Removing libdbd-mysql-perl (4.028-2+deb8u2) ... Removing libdbd-pg-perl (3.4.2-1) ... Removing libdbd-sqlite3-perl (1.44-1) ... Removing libdbi-perl (1.631-3+b1) ... Removing libdevel-argnames-perl (0.03-1) ... Removing libdevel-lexalias-perl (0.05-1+b2) ... Removing libdevel-caller-perl (2.06-1+b2) ... Removing libdevel-globaldestruction-perl (0.13-1) ... Removing libdevel-stacktrace-perl (1.3400-1) ... Removing libdevel-symdump-perl (2.12-1) ... Removing libdigest-perl-md5-perl (1.9-1) ... Removing libmodule-runtime-conflicts-perl (0.001-1) ... Removing libdist-checkconflicts-perl (0.11-1) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u14) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u14) ... Removing liberror-perl (0.17-1.1) ... Removing libtype-tiny-perl (1.000004-1) ... Removing libexporter-tiny-perl (0.038-2) ... Removing libfcgi-perl (0.77-1+deb8u1) ... Removing ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Removing libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Removing libffi5:amd64 (3.0.10-3) ... Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Removing ncbi-blast+ (2.2.29-3) ... Removing python (2.7.9-1) ... Removing python2.7 (2.7.9-2+deb8u1) ... Removing libfile-find-rule-perl (0.33-1) ... Removing libsvg-graph-perl (0.02-2) ... Removing libtree-dagnode-perl (1.22-1) ... Removing libfile-slurp-tiny-perl (0.003-1) ... Removing libhtml-format-perl (2.11-1) ... Removing libfont-afm-perl (1.20-1) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Removing libfreezethaw-perl (0.5001-1) ... Removing libgnutls26:amd64 (2.12.20-8+deb7u5) ... Removing libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Removing libgd-perl (2.53-1+b1) ... Removing libgd3:amd64 (2.1.0-5+deb8u11) ... Removing xml-core (0.13+nmu2) ... Removing sgml-base (1.26+nmu4) ... Removing rename (0.20-3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing tm-align (20140601+dfsg-1) ... Removing libgfortran3:amd64 (4.9.2-10) ... Removing wise (2.4.1-17) ... Removing shared-mime-info (1.3-1) ... Removing libglib2.0-data (2.42.1-1) ... Removing libpq5:amd64 (9.4.15-0+deb8u1) ... Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u3) ... Removing libgomp1:amd64 (4.9.2-10) ... Removing libgraph-perl (1:0.96-1.1) ... Removing libgraph4 (2.26.3-14+deb7u2) ... Removing libharfbuzz0b:amd64 (0.9.35-2) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing libgs9-common (9.06~dfsg-2+deb8u6) ... Removing libheap-perl (0.80-2) ... Removing libhpdf-2.2.1 (2.2.1-1.1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhtml-tableextract-perl (2.11-1) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Removing libxmu6:amd64 (2:1.1.2-1) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Removing libice6:amd64 (2:1.0.9-1+b1) ... Removing libidn11:amd64 (1.29-1+deb8u2) ... Removing libijs-0.35:amd64 (0.35-10) ... Removing libpackage-variant-perl (1.002002-3) ... Removing libimport-into-perl (1.002004-1) ... Removing libindirect-perl (0.33-1) ... Removing libipc-run-perl (0.92-1) ... Removing libio-pty-perl (1:1.08-1+b4) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libio-socket-ip-perl (0.32-1) ... Removing libmailtools-perl (2.13-1) ... Removing libnet-smtp-ssl-perl (1.01-3) ... Removing libio-string-perl (1.08-3) ... Removing libole-storage-lite-perl (0.19-1) ... Removing libio-stringy-perl (2.110-5) ... Removing libipc-sharelite-perl (0.17-3+b2) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u14) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u14) ... Removing libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Removing libtiff4:amd64 (3.9.6-11) ... Removing libjbig2dec0 (0.13-4~deb8u2) ... Removing libjcode-pm-perl (2.06-1) ... Removing libjpeg8:amd64 (8d-1+deb7u1) ... Removing libjs-jquery (1.7.2+dfsg-3.2) ... Removing libjson-perl (2.61-1) ... Removing liblcms2-2:amd64 (2.6-3+deb8u1) ... Removing liblexical-sealrequirehints-perl (0.007-1+b2) ... Removing libstatistics-descriptive-perl (3.0607-1) ... Removing libpackage-deprecationmanager-perl (0.13-1) ... Removing liblist-moreutils-perl (0.33-2+b1) ... Removing libterm-ui-perl (0.42-1) ... Removing liblog-message-simple-perl (0.10-2) ... Removing liblog-message-perl (0.8-1) ... Removing liblua5.1-0:amd64 (5.1.5-7.1) ... Removing libmagic1:amd64 (1:5.22+15-2+deb8u3) ... Removing libmath-spline-perl (0.02-1) ... Removing libmath-derivative-perl (0.01-6) ... Removing libmldbm-perl (2.05-1) ... Removing libmodule-find-perl (0.12-1) ... Removing libparams-validate-perl (1.13-1+b1) ... Removing libpackage-stash-perl (0.37-1) ... Removing libmodule-implementation-perl (0.09-1) ... Removing libmodule-pluggable-perl (5.1-1) ... Removing libmodule-runtime-perl (0.014-1) ... Removing libmodule-signature-perl (0.73-1+deb8u2) ... Removing libmysqlclient18:amd64 (5.5.58-0+deb8u1) ... Removing libncbi6:amd64 (6.1.20120620-8) ... Removing libnumber-compare-perl (0.03-1) ... Removing libossp-uuid-perl (1.6.2-1.5+b1) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Removing libpackage-constants-perl (0.04-1) ... Removing libpackage-stash-xs-perl (0.28-2+b1) ... Removing libpadwalker-perl (1.98-1+b1) ... Removing libpaper-utils (1.1.24+nmu4) ... Removing libpaper1:amd64 (1.1.24+nmu4) ... Removing libparams-classify-perl (0.013-4+b2) ... Removing libparams-util-perl (1.07-2+b1) ... Removing libspreadsheet-writeexcel-perl (2.40-1) ... Removing libparse-recdescent-perl (1.967009+dfsg-1) ... Removing libpath-class-perl (0.35-1) ... Removing libpathplan4 (2.38.0-7) ... Removing libperl5.20 (5.20.2-3+deb8u9) ... Removing libpixman-1-0:amd64 (0.32.6-3) ... Removing libpod-latex-perl (0.61-1) ... Removing 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Removing 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Removing libpod-readme-perl (0.11-1) ... Removing libpostscript-perl (0.06-2) ... Removing libprocps0:amd64 (1:3.3.3-3) ... Removing libpython-stdlib:amd64 (2.7.9-1) ... Removing python-minimal (2.7.9-1) ... Removing python2.7-minimal (2.7.9-2+deb8u1) ... Removing libquadmath0:amd64 (4.9.2-10) ... Removing libreadonly-perl (2.000-1) ... Removing libreadonly-xs-perl (1.05-1+b1) ... Removing libregexp-common-perl (2013031301-1) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libscope-guard-perl (0.20-1) ... Removing libset-scalar-perl (1.29-1) ... Removing libsocket-perl (2.016-1) ... Removing libsort-naturally-perl (1.03-1) ... Removing ssl-cert (1.0.35) ... Removing libstrictures-perl (1.005005-1) ... Removing libsub-exporter-progressive-perl (0.001011-1) ... Removing libsub-identify-perl (0.08-1) ... Removing libsub-install-perl (0.928-1) ... Removing libsub-name-perl (0.12-1) ... Removing libsvg-perl (2.59-1) ... Removing libswitch-perl (2.17-2) ... Removing libsystemd-login0:amd64 (215-17+deb8u7) ... Removing libtask-weaken-perl (1.04-1) ... Removing libtasn1-3:amd64 (2.13-2+deb7u2) ... Removing libtext-autoformat-perl (1.669006-1) ... Removing libtext-glob-perl (0.09-1) ... Removing libtext-reform-perl (1.20-1) ... Removing libtext-soundex-perl (3.4-1+b2) ... Removing libtext-tabulardisplay-perl (1.38-1) ... Removing libtext-template-perl (1.46-1) ... Removing libtie-ixhash-perl (1.23-1) ... Removing libtry-tiny-perl (0.22-1) ... Removing libtype-tiny-xs-perl (0.010-1) ... Removing libunicode-map-perl (0.112-11+b1) ... Removing libvariable-magic-perl (0.55-1) ... Removing libvpx1:amd64 (1.3.0-3) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Removing libxdot4 (2.38.0-7) ... Removing libxext6:amd64 (2:1.3.3-1) ... Removing libxml-dom-xpath-perl (0.14-1) ... Removing libxml-dom-perl (1.44-1) ... Removing libxml-sax-writer-perl (0.54-1) ... Removing libxml-filter-buffertext-perl (1.01-5) ... Removing libxml-simple-perl (2.20-1) ... Removing libxml-libxslt-perl (1.92-1+b1) ... Removing libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.11-1) ... Removing libxml-perl (0.08-2) ... Removing libxml-regexp-perl (0.04-1) ... Removing libxml-sax-base-perl (1.07-1) ... Removing libxml-twig-perl (1:3.48-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libxml-xpathengine-perl (0.13-1) ... Removing libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u5) ... Removing libxtables10 (1.4.21-2+b1) ... Removing libyaml-0-2:amd64 (0.1.6-3) ... Removing libyaml-libyaml-perl (0.41-6) ... Removing libyaml-perl (1.13-1) ... Removing libyaml-syck-perl (1.27-2+b2) ... Removing mafft (7.205-1) ... Removing maq (0.7.1-5) ... Removing muscle (1:3.8.31-1) ... Removing mustang (3.2.2-1) ... Removing mysql-common (5.5.58-0+deb8u1) ... Removing ncbi-data (6.1.20120620-8) ... Removing perl-doc (5.20.2-3+deb8u9) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing phyml (2:20120412-2) ... Removing poa (2.0+20060928-3) ... Removing poppler-data (0.4.7-1) ... Removing prank (0.0.140110-1) ... Removing primer3 (2.3.6-1) ... Removing probalign (1.4-3) ... Removing probcons (1.12-9) ... Removing proda (1.0-8) ... Removing samtools (0.1.19-1) ... Removing sim4 (0.0.20121010-1) ... Removing t-coffee (11.00.8cbe486-1) ... Removing tigr-glimmer (3.02-3) ... Removing wise-data (2.4.1-17) ... Removing x11-common (1:7.7+7) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-user-dirs (0.15-2) ... Removing libxml-parser-perl (2.41-3) ... Removing libpango-1.0-0:amd64 (1.36.8-3) ... Removing fontconfig (2.11.0-6.3+deb8u1) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-liberation (1.07.4-1) ... Removing libmro-compat-perl (0.12-1) ... Removing libclass-c3-perl (0.26-1) ... Removing libalgorithm-c3-perl (0.09-1) ... Removing libcdt4 (2.26.3-14+deb7u2) ... Removing libthai0:amd64 (0.1.21-1) ... Removing libdatrie1:amd64 (0.2.8-1) ... Removing libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Removing libglib2.0-0:amd64 (2.42.1-1+b1) ... Removing libltdl7:amd64 (2.4.2-1.11+b1) ... Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing libthai-data (0.1.21-1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Removing libx11-data (2:1.6.2-3+deb8u1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Removing mime-support (3.58) ... Removing libwww-perl (6.08-1) ... Removing libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-1) ... Removing libhtml-parser-perl (3.71-1+b3) ... Removing libhtml-tagset-perl (3.20-2) ... Removing libhttp-cookies-perl (6.01-1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libnet-http-perl (6.07-1) ... Removing libio-socket-ssl-perl (2.002-2+deb8u3) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u4) ... Removing libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12) ... Removing libnet-ssleay-perl (1.65-1+deb8u1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libwww-robotrules-perl (6.01-1) ... Removing netbase (5.3) ... Removing ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Removing libcups2:amd64 (1.7.5-11+deb8u2) ... Removing libavahi-client3:amd64 (0.6.31-5) ... Removing libavahi-common3:amd64 (0.6.31-5) ... Removing libavahi-common-data:amd64 (0.6.31-5) ... Removing libhttp-message-perl (6.06-1) ... Removing libencode-locale-perl (1.03-1) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Removing openssl (1.0.1t-1+deb8u7) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u7) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Removing libtimedate-perl (2.3000-2) ... Removing liburi-perl (1.64-1) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing perl (5.20.2-3+deb8u9) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Removing perl-modules (5.20.2-3+deb8u9) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 2m42.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', 'remove', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libyaml-perl', 'emboss', 'libpangoxft-1.0-0:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libmro-compat-perl', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libfile-listing-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'kalign', 'libxml-sax-perl', 'libprocps0:amd64', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'ruby1.9.1', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libgraph4', 'libfile-find-rule-perl', 'libgd3:amd64', 'libxext6:amd64', 'libhtml-format-perl', 'libeval-closure-perl', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'python-minimal', 'libxft2:amd64', 'bwa', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libcupsimage2:amd64', 'libnamespace-clean-perl', 'libdigest-perl-md5-perl', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'ttf-liberation', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libfile-slurp-tiny-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libsql-translator-perl', 'libtext-tabulardisplay-perl', 'libpixman-1-0:amd64', 'proda', 'bedtools', 'libfile-sharedir-perl', 'primer3', 'libtext-autoformat-perl', 'libsocket-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libmodule-runtime-perl', 'maq', 'libxslt1.1:amd64', 'libjbig2dec0', 'libmysqlclient18:amd64', 'libidn11:amd64', 'libxml-libxslt-perl', 'libtext-recordparser-perl', 'libjcode-pm-perl', 'libkrb5support0:amd64', 'libmoose-perl', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libscope-guard-perl', 'libmodule-runtime-conflicts-perl', 'libjs-jquery', 'libconfig-any-perl', 'libheap-perl', 'libbio-asn1-entrezgene-perl', 'libgmp10:amd64', 't-coffee', 'libnettle4:amd64', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'libp11-kit0:amd64', 'libyaml-libyaml-perl', 'libsoftware-license-perl', 'libpackage-stash-perl', 'libgomp1:amd64', 'libthai0:amd64', 'libxml-writer-perl', 'hmmer', 'libmagic1:amd64', 'libwww-perl', 'libclass-accessor-perl', 'apache2-mpm-worker', 'apache2.2-common', 'libcontext-preserve-perl', 'libmath-derivative-perl', 'libdevel-stacktrace-perl', 'libxml-sax-base-perl', 'libreadonly-perl', 'libsasl2-modules-db:amd64', 'poppler-data', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'dialign-tx-data', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'libxml-dom-perl', 'openssl', 'fontconfig-config', 'libconfig-general-perl', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libclass-accessor-grouped-perl', 'libmultidimensional-perl', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'libalgorithm-munkres-perl', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'ncbi-blast+', 'libdata-page-perl', 'clustalw', 'libncbi6:amd64', 'libgvpr1', 'libgvpr2', 'libisccfg-export90', 'phyml', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'libsql-abstract-perl', 'libapache2-mod-perl2', 'libpackage-deprecationmanager-perl', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'fonts-liberation', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libxau6:amd64', 'libclass-load-perl', 'iproute2', 'krb5-locales', 'exonerate', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libcommon-sense-perl', 'libparams-util-perl', 'iproute', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'apache2.2-bin', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libyaml-0-2:amd64', 'libgdbm3:amd64', 'fontconfig', 'libace-perl', 'infernal', 'libclass-c3-xs-perl', 'libtext-glob-perl', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libbsd0:amd64', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'mafft', 'libclass-makemethods-perl', 'apache2-utils', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'libjpeg8:amd64', 'libtype-tiny-xs-perl', 'emboss-lib', 'libswitch-perl', 'libhttp-message-perl', 'libsub-exporter-perl', 'blast2', 'libio-sessiondata-perl', 'libparams-validate-perl', 'sgml-base', 'libhtml-parser-perl', 'libpod-readme-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libgnutls-deb0-28:amd64', 'libpangox-1.0-0:amd64', 'mime-support', 'libpango1.0-0:amd64', 'libdevel-argnames-perl', 'libgetopt-long-descriptive-perl', 'ncbi-data', 'libharfbuzz0b:amd64', 'perl-tk', 'libbit-vector-perl', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libsm6:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'libtext-reform-perl', 'libsub-identify-perl', 'libio-socket-ip-perl', 'libjson-perl', 'libpaper-utils', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libvariable-magic-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libreadonly-xs-perl', 'libxt6:amd64', 'libmath-spline-perl', 'libffi6:amd64', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libdata-compare-perl', 'libffi5:amd64', 'libindirect-perl', 'libxml-regexp-perl', 'libmodule-find-perl', 'samtools', 'libxtables10', 'libtiff4:amd64', 'probalign', 'libio-pty-perl', 'libpathplan4', 'libnumber-compare-perl', 'libpackage-variant-perl', 'libcrypt-rc4-perl', 'libcgraph6', 'libxaw7:amd64', 'libyaml-syck-perl', 'libcgraph5', 'libgvc5', 'libgvc6', 'libdbix-class-tree-nestedset-perl', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libxml-sax-expat-perl', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'libmailtools-perl', 'libappconfig-perl', 'libdist-checkconflicts-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'libxml-sax-writer-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'apache2-bin', 'libdbicx-testdatabase-perl', 'libsystemd-login0:amd64', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'shared-mime-info', 'libxml2:amd64', 'libsoap-lite-perl', 'libx11-6:amd64', 'libclass-accessor-chained-perl', 'libtree-dagnode-perl', 'tigr-glimmer', 'libclass-base-perl', 'mustang', 'libhash-merge-perl', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'libdata-dumper-concise-perl', 'libperl5.20', 'libparams-classify-perl', 'dialign-tx', 'libclass-tiny-perl', 'libxml-twig-perl', 'libxdmcp6:amd64', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libxml-parser-perl', 'libssl1.0.0:amd64', 'libregexp-common-perl', 'libclass-load-xs-perl', 'libgs9', 'libfreetype6:amd64', 'libxml-perl', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'libpath-class-perl', 'liblwp-protocol-https-perl', 'perl', 'libatm1:amd64', 'libclass-data-inheritable-perl', 'libhttp-daemon-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'netbase', 'libdbix-class-perl', 'libxrender1:amd64', 'libjbig0:amd64', 'libruby1.9.1', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-partialdump-perl', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libclass-c3-componentised-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libhttp-negotiate-perl', 'libunicode-map-perl', 'libaprutil1:amd64', 'file', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'libjson-xs-perl', 'emboss-data', 'libconfig-tiny-perl', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libtemplate-perl', 'libsvg-perl', 'libdevel-caller-perl', 'libbsd-resource-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'libsasl2-2:amd64', 'libcdt5', 'libcdt4', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl', 'libbio-chado-schema-perl'] 2m42.7s INFO: Running scripts post_remove 2m42.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_remove_exceptions'] 2m42.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_remove_exceptions'] 2m42.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg', '--purge', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libyaml-perl', 'emboss', 'libpangoxft-1.0-0:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libmro-compat-perl', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libfile-listing-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'kalign', 'libxml-sax-perl', 'libprocps0:amd64', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'ruby1.9.1', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libgraph4', 'libfile-find-rule-perl', 'libgd3:amd64', 'libxext6:amd64', 'libhtml-format-perl', 'libeval-closure-perl', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'python-minimal', 'libxft2:amd64', 'bwa', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libcupsimage2:amd64', 'libnamespace-clean-perl', 'libdigest-perl-md5-perl', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'ttf-liberation', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libfile-slurp-tiny-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libsql-translator-perl', 'libtext-tabulardisplay-perl', 'libpixman-1-0:amd64', 'proda', 'bedtools', 'libfile-sharedir-perl', 'primer3', 'libtext-autoformat-perl', 'libsocket-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libmodule-runtime-perl', 'maq', 'libxslt1.1:amd64', 'libjbig2dec0', 'libmysqlclient18:amd64', 'libidn11:amd64', 'libxml-libxslt-perl', 'libtext-recordparser-perl', 'libjcode-pm-perl', 'libkrb5support0:amd64', 'libmoose-perl', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libscope-guard-perl', 'libmodule-runtime-conflicts-perl', 'libjs-jquery', 'libconfig-any-perl', 'libheap-perl', 'libbio-asn1-entrezgene-perl', 'libgmp10:amd64', 't-coffee', 'libnettle4:amd64', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'libp11-kit0:amd64', 'libyaml-libyaml-perl', 'libsoftware-license-perl', 'libpackage-stash-perl', 'libgomp1:amd64', 'libthai0:amd64', 'libxml-writer-perl', 'hmmer', 'libmagic1:amd64', 'libwww-perl', 'libclass-accessor-perl', 'apache2-mpm-worker', 'apache2.2-common', 'libcontext-preserve-perl', 'libmath-derivative-perl', 'libdevel-stacktrace-perl', 'libxml-sax-base-perl', 'libreadonly-perl', 'libsasl2-modules-db:amd64', 'poppler-data', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'dialign-tx-data', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'libxml-dom-perl', 'openssl', 'fontconfig-config', 'libconfig-general-perl', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libclass-accessor-grouped-perl', 'libmultidimensional-perl', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'libalgorithm-munkres-perl', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'ncbi-blast+', 'libdata-page-perl', 'clustalw', 'libncbi6:amd64', 'libgvpr1', 'libgvpr2', 'libisccfg-export90', 'phyml', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'libsql-abstract-perl', 'libapache2-mod-perl2', 'libpackage-deprecationmanager-perl', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'fonts-liberation', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libxau6:amd64', 'libclass-load-perl', 'iproute2', 'krb5-locales', 'exonerate', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libcommon-sense-perl', 'libparams-util-perl', 'iproute', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'apache2.2-bin', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libyaml-0-2:amd64', 'libgdbm3:amd64', 'fontconfig', 'libace-perl', 'infernal', 'libclass-c3-xs-perl', 'libtext-glob-perl', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libbsd0:amd64', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'mafft', 'libclass-makemethods-perl', 'apache2-utils', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'libjpeg8:amd64', 'libtype-tiny-xs-perl', 'emboss-lib', 'libswitch-perl', 'libhttp-message-perl', 'libsub-exporter-perl', 'blast2', 'libio-sessiondata-perl', 'libparams-validate-perl', 'sgml-base', 'libhtml-parser-perl', 'libpod-readme-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libgnutls-deb0-28:amd64', 'libpangox-1.0-0:amd64', 'mime-support', 'libpango1.0-0:amd64', 'libdevel-argnames-perl', 'libgetopt-long-descriptive-perl', 'ncbi-data', 'libharfbuzz0b:amd64', 'perl-tk', 'libbit-vector-perl', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libsm6:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'libtext-reform-perl', 'libsub-identify-perl', 'libio-socket-ip-perl', 'libjson-perl', 'libpaper-utils', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libvariable-magic-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libreadonly-xs-perl', 'libxt6:amd64', 'libmath-spline-perl', 'libffi6:amd64', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libdata-compare-perl', 'libffi5:amd64', 'libindirect-perl', 'libxml-regexp-perl', 'libmodule-find-perl', 'samtools', 'libxtables10', 'libtiff4:amd64', 'probalign', 'libio-pty-perl', 'libpathplan4', 'libnumber-compare-perl', 'libpackage-variant-perl', 'libcrypt-rc4-perl', 'libcgraph6', 'libxaw7:amd64', 'libyaml-syck-perl', 'libcgraph5', 'libgvc5', 'libgvc6', 'libdbix-class-tree-nestedset-perl', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libxml-sax-expat-perl', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'libmailtools-perl', 'libappconfig-perl', 'libdist-checkconflicts-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'libxml-sax-writer-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'apache2-bin', 'libdbicx-testdatabase-perl', 'libsystemd-login0:amd64', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'shared-mime-info', 'libxml2:amd64', 'libsoap-lite-perl', 'libx11-6:amd64', 'libclass-accessor-chained-perl', 'libtree-dagnode-perl', 'tigr-glimmer', 'libclass-base-perl', 'mustang', 'libhash-merge-perl', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'libdata-dumper-concise-perl', 'libperl5.20', 'libparams-classify-perl', 'dialign-tx', 'libclass-tiny-perl', 'libxml-twig-perl', 'libxdmcp6:amd64', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libxml-parser-perl', 'libssl1.0.0:amd64', 'libregexp-common-perl', 'libclass-load-xs-perl', 'libgs9', 'libfreetype6:amd64', 'libxml-perl', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'libpath-class-perl', 'liblwp-protocol-https-perl', 'perl', 'libatm1:amd64', 'libclass-data-inheritable-perl', 'libhttp-daemon-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'netbase', 'libdbix-class-perl', 'libxrender1:amd64', 'libjbig0:amd64', 'libruby1.9.1', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-partialdump-perl', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libclass-c3-componentised-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libhttp-negotiate-perl', 'libunicode-map-perl', 'libaprutil1:amd64', 'file', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'libjson-xs-perl', 'emboss-data', 'libconfig-tiny-perl', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libtemplate-perl', 'libsvg-perl', 'libdevel-caller-perl', 'libbsd-resource-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'libsasl2-2:amd64', 'libcdt5', 'libcdt4', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl'] 2m44.9s DUMP: (Reading database ... 7975 files and directories currently installed.) Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-perl which isn't installed dpkg: warning: ignoring request to remove emboss which isn't installed Removing libpangoxft-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpangoxft-1.0-0:amd64 (1.36.8-3) ... Removing libargtable2-0 (12-1.1) ... Purging configuration files for libargtable2-0 (12-1.1) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u4) ... Purging configuration files for libtiff5:amd64 (4.0.3-12.3+deb8u4) ... dpkg: warning: ignoring request to remove libclass-c3-perl which isn't installed dpkg: warning: ignoring request to remove libole-storage-lite-perl which isn't installed Removing libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... 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Purging configuration files for libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... dpkg: warning: ignoring request to remove libtext-template-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove ghostscript which isn't installed dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed Removing kalign (1:2.03+20110620-2) ... Purging configuration files for kalign (1:2.03+20110620-2) ... Removing libxml-sax-perl (0.99+dfsg-2) ... Purging configuration files for libxml-sax-perl (0.99+dfsg-2) ... Removing libprocps0:amd64 (1:3.3.3-3) ... Purging configuration files for libprocps0:amd64 (1:3.3.3-3) ... dpkg: warning: ignoring request to remove dialign which isn't installed dpkg: warning: ignoring request to remove libsub-install-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed Removing ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Purging configuration files for ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... dpkg: warning: ignoring request to remove libdbd-pg-perl which isn't installed dpkg: warning: ignoring request to remove libapache-dbi-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-constants-perl which isn't installed Removing libgraph4 (2.26.3-14+deb7u2) ... Purging configuration files for libgraph4 (2.26.3-14+deb7u2) ... dpkg: warning: ignoring request to remove libfile-find-rule-perl which isn't installed Removing libgd3:amd64 (2.1.0-5+deb8u11) ... 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Purging configuration files for libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-pluggable-perl which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove libdata-page-perl which isn't installed Removing clustalw (2.1+lgpl-4) ... Purging configuration files for clustalw (2.1+lgpl-4) ... Removing libncbi6:amd64 (6.1.20120620-8) ... Purging configuration files for libncbi6:amd64 (6.1.20120620-8) ... Removing libgvpr1 (2.26.3-14+deb7u2) ... Purging configuration files for libgvpr1 (2.26.3-14+deb7u2) ... Removing libgvpr2 (2.38.0-7) ... Purging configuration files for libgvpr2 (2.38.0-7) ... 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Purging configuration files for mysql-common (5.5.58-0+deb8u1) ... dpkg: warning: ignoring request to remove libstrictures-perl which isn't installed dpkg: warning: ignoring request to remove libterm-ui-perl which isn't installed dpkg: warning: ignoring request to remove liblog-message-perl which isn't installed Removing apache2.2-bin (2.4.10-10+deb8u11) ... Purging configuration files for apache2.2-bin (2.4.10-10+deb8u11) ... Removing lynx-cur (2.8.9dev1-2+deb8u1) ... Purging configuration files for lynx-cur (2.8.9dev1-2+deb8u1) ... dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed Removing libyaml-0-2:amd64 (0.1.6-3) ... Purging configuration files for libyaml-0-2:amd64 (0.1.6-3) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Purging configuration files for libgdbm3:amd64 (1.8.3-13.1) ... Removing fontconfig (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig (2.11.0-6.3+deb8u1) ... dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove infernal which isn't installed dpkg: warning: ignoring request to remove libclass-c3-xs-perl which isn't installed dpkg: warning: ignoring request to remove libtext-glob-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-c3-perl which isn't installed Removing libglib2.0-0:amd64 (2.42.1-1+b1) ... Purging configuration files for libglib2.0-0:amd64 (2.42.1-1+b1) ... Removing graphviz (2.38.0-7) ... Purging configuration files for graphviz (2.38.0-7) ... Removing libbsd0:amd64 (0.7.0-2) ... Purging configuration files for libbsd0:amd64 (0.7.0-2) ... dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u14) ... Purging configuration files for libisc-export95 (1:9.9.5.dfsg-9+deb8u14) ... dpkg: warning: ignoring request to remove liblexical-sealrequirehints-perl which isn't installed Removing libgnutls26:amd64 (2.12.20-8+deb7u5) ... Purging configuration files for libgnutls26:amd64 (2.12.20-8+deb7u5) ... dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove libclass-makemethods-perl which isn't installed dpkg: warning: ignoring request to remove apache2-utils which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed Removing libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Purging configuration files for libgcrypt11:amd64 (1.5.0-5+deb7u4) ... dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed Removing libxdot4 (2.38.0-7) ... 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Purging configuration files for sgml-base (1.26+nmu4) ... dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libpod-readme-perl which isn't installed Removing python2.7 (2.7.9-2+deb8u1) ... Purging configuration files for python2.7 (2.7.9-2+deb8u1) ... dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdate-manip-perl which isn't installed Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Purging configuration files for libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libpangox-1.0-0:amd64 (0.0.2-5) ... Purging configuration files for libpangox-1.0-0:amd64 (0.0.2-5) ... Removing mime-support (3.58) ... Purging configuration files for mime-support (3.58) ... dpkg: warning: ignoring request to remove libpango1.0-0 which isn't installed dpkg: warning: ignoring request to remove libdevel-argnames-perl which isn't installed dpkg: warning: ignoring request to remove libgetopt-long-descriptive-perl which isn't installed Removing ncbi-data (6.1.20120620-8) ... Purging configuration files for ncbi-data (6.1.20120620-8) ... Removing libharfbuzz0b:amd64 (0.9.35-2) ... Purging configuration files for libharfbuzz0b:amd64 (0.9.35-2) ... dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove libbit-vector-perl which isn't installed dpkg: warning: ignoring request to remove isc-dhcp-common which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... 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Purging configuration files for libxcb-render0:amd64 (1.10-3+b1) ... dpkg: warning: ignoring request to remove rename which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libdata-compare-perl which isn't installed Removing libffi5:amd64 (3.0.10-3) ... Purging configuration files for libffi5:amd64 (3.0.10-3) ... dpkg: warning: ignoring request to remove libindirect-perl which isn't installed dpkg: warning: ignoring request to remove libxml-regexp-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-find-perl which isn't installed Removing samtools (0.1.19-1) ... Purging configuration files for samtools (0.1.19-1) ... Removing libxtables10 (1.4.21-2+b1) ... Purging configuration files for libxtables10 (1.4.21-2+b1) ... Removing libtiff4:amd64 (3.9.6-11) ... Purging configuration files for libtiff4:amd64 (3.9.6-11) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove libio-pty-perl which isn't installed Removing libpathplan4 (2.38.0-7) ... Purging configuration files for libpathplan4 (2.38.0-7) ... dpkg: warning: ignoring request to remove libnumber-compare-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-variant-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-rc4-perl which isn't installed Removing libcgraph6 (2.38.0-7) ... Purging configuration files for libcgraph6 (2.38.0-7) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Purging configuration files for libxaw7:amd64 (2:1.0.12-2+b1) ... dpkg: warning: ignoring request to remove libyaml-syck-perl which isn't installed Removing libcgraph5 (2.26.3-14+deb7u2) ... Purging configuration files for libcgraph5 (2.26.3-14+deb7u2) ... Removing libgvc5 (2.26.3-14+deb7u2) ... Purging configuration files for libgvc5 (2.26.3-14+deb7u2) ... Removing libgvc6 (2.38.0-7) ... Purging configuration files for libgvc6 (2.38.0-7) ... dpkg: warning: ignoring request to remove libdbix-class-tree-nestedset-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Removing libpaper1:amd64 (1.1.24+nmu4) ... Purging configuration files for libpaper1:amd64 (1.1.24+nmu4) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u14) ... Purging configuration files for libirs-export91 (1:9.9.5.dfsg-9+deb8u14) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Purging configuration files for libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing javascript-common (11) ... Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed Removing python2.7-minimal (2.7.9-2+deb8u1) ... Purging configuration files for python2.7-minimal (2.7.9-2+deb8u1) ... Removing libcups2:amd64 (1.7.5-11+deb8u2) ... Purging configuration files for libcups2:amd64 (1.7.5-11+deb8u2) ... dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpangoft2-1.0-0:amd64 (1.36.8-3) ... dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libappconfig-perl which isn't installed dpkg: warning: ignoring request to remove libdist-checkconflicts-perl which isn't installed Removing libdatrie1:amd64 (0.2.8-1) ... Purging configuration files for libdatrie1:amd64 (0.2.8-1) ... Removing libmodule-build-perl (0.421000-2+deb8u1) ... Purging configuration files for libmodule-build-perl (0.421000-2+deb8u1) ... Removing apache2 (2.4.10-10+deb8u11) ... Purging configuration files for apache2 (2.4.10-10+deb8u11) ... dpkg: warning: while removing apache2, directory '/var/www' not empty so not removed Removing libxcb1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb1:amd64 (1.10-3+b1) ... dpkg: warning: ignoring request to remove libxml-sax-writer-perl which isn't installed dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove libbareword-filehandles-perl which isn't installed dpkg: warning: ignoring request to remove libtext-soundex-perl which isn't installed Removing ca-certificates (20141019+deb8u3) ... Purging configuration files for ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing apache2-bin (2.4.10-10+deb8u11) ... Purging configuration files for apache2-bin (2.4.10-10+deb8u11) ... dpkg: warning: ignoring request to remove libdbicx-testdatabase-perl which isn't installed Removing libsystemd-login0:amd64 (215-17+deb8u7) ... Purging configuration files for libsystemd-login0:amd64 (215-17+deb8u7) ... dpkg: warning: ignoring request to remove liblog-message-simple-perl which isn't installed Removing libavahi-client3:amd64 (0.6.31-5) ... Purging configuration files for libavahi-client3:amd64 (0.6.31-5) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Purging configuration files for libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing shared-mime-info (1.3-1) ... Purging configuration files for shared-mime-info (1.3-1) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u5) ... Purging configuration files for libxml2:amd64 (2.9.1+dfsg1-5+deb8u5) ... dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Purging configuration files for libx11-6:amd64 (2:1.6.2-3+deb8u1) ... dpkg: warning: ignoring request to remove libclass-accessor-chained-perl which isn't installed dpkg: warning: ignoring request to remove libtree-dagnode-perl which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove libclass-base-perl which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed dpkg: warning: ignoring request to remove libhash-merge-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-xs-perl which isn't installed Removing libquadmath0:amd64 (4.9.2-10) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10) ... dpkg: warning: ignoring request to remove libdata-dumper-concise-perl which isn't installed dpkg: warning: ignoring request to remove libperl5.20 which isn't installed dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove libclass-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+b1) ... dpkg: warning: ignoring request to remove libsvg-graph-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u7) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u7) ... dpkg: warning: ignoring request to remove libregexp-common-perl which isn't installed dpkg: warning: ignoring request to remove libclass-load-xs-perl which isn't installed Removing libgs9 (9.06~dfsg-2+deb8u6) ... Purging configuration files for libgs9 (9.06~dfsg-2+deb8u6) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Purging configuration files for libfreetype6:amd64 (2.5.2-3+deb8u2) ... dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libpostscript-perl which isn't installed Removing xml-core (0.13+nmu2) ... Purging configuration files for xml-core (0.13+nmu2) ... dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove libpath-class-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove perl which isn't installed Removing libatm1:amd64 (1:2.5.1-1.5) ... Purging configuration files for libatm1:amd64 (1:2.5.1-1.5) ... dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove ruby2.1 which isn't installed Removing x11-common (1:7.7+7) ... Purging configuration files for x11-common (1:7.7+7) ... dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed Removing liblua5.1-0:amd64 (5.1.5-7.1) ... Purging configuration files for liblua5.1-0:amd64 (5.1.5-7.1) ... Removing netbase (5.3) ... Purging configuration files for netbase (5.3) ... dpkg: warning: ignoring request to remove libdbix-class-perl which isn't installed Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Purging configuration files for libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libjbig0:amd64 (2.1-3.1) ... Purging configuration files for libjbig0:amd64 (2.1-3.1) ... Removing libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Purging configuration files for libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove librole-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed Removing libice6:amd64 (2:1.0.9-1+b1) ... Purging configuration files for libice6:amd64 (2:1.0.9-1+b1) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove libdevel-partialdump-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove lynx which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libclass-c3-componentised-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libunicode-map-perl which isn't installed Removing libaprutil1:amd64 (1.5.4-1) ... Purging configuration files for libaprutil1:amd64 (1.5.4-1) ... dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed Removing libgfortran3:amd64 (4.9.2-10) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10) ... Removing libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Purging configuration files for libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed Removing perl-modules (5.20.2-3+deb8u9) ... Purging configuration files for perl-modules (5.20.2-3+deb8u9) ... dpkg: warning: ignoring request to remove libjson-xs-perl which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove libconfig-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libtemplate-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-caller-perl which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libsort-naturally-perl which isn't installed Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Purging configuration files for libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libcdt5 (2.38.0-7) ... Purging configuration files for libcdt5 (2.38.0-7) ... Removing libcdt4 (2.26.3-14+deb7u2) ... Purging configuration files for libcdt4 (2.26.3-14+deb7u2) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libspreadsheet-parseexcel-perl which isn't installed 2m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg', '--purge', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libyaml-perl', 'emboss', 'libpangoxft-1.0-0:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libmro-compat-perl', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libfile-listing-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'kalign', 'libxml-sax-perl', 'libprocps0:amd64', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'ruby1.9.1', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libgraph4', 'libfile-find-rule-perl', 'libgd3:amd64', 'libxext6:amd64', 'libhtml-format-perl', 'libeval-closure-perl', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'python-minimal', 'libxft2:amd64', 'bwa', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libcupsimage2:amd64', 'libnamespace-clean-perl', 'libdigest-perl-md5-perl', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'ttf-liberation', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libfile-slurp-tiny-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libsql-translator-perl', 'libtext-tabulardisplay-perl', 'libpixman-1-0:amd64', 'proda', 'bedtools', 'libfile-sharedir-perl', 'primer3', 'libtext-autoformat-perl', 'libsocket-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libmodule-runtime-perl', 'maq', 'libxslt1.1:amd64', 'libjbig2dec0', 'libmysqlclient18:amd64', 'libidn11:amd64', 'libxml-libxslt-perl', 'libtext-recordparser-perl', 'libjcode-pm-perl', 'libkrb5support0:amd64', 'libmoose-perl', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libscope-guard-perl', 'libmodule-runtime-conflicts-perl', 'libjs-jquery', 'libconfig-any-perl', 'libheap-perl', 'libbio-asn1-entrezgene-perl', 'libgmp10:amd64', 't-coffee', 'libnettle4:amd64', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'libp11-kit0:amd64', 'libyaml-libyaml-perl', 'libsoftware-license-perl', 'libpackage-stash-perl', 'libgomp1:amd64', 'libthai0:amd64', 'libxml-writer-perl', 'hmmer', 'libmagic1:amd64', 'libwww-perl', 'libclass-accessor-perl', 'apache2-mpm-worker', 'apache2.2-common', 'libcontext-preserve-perl', 'libmath-derivative-perl', 'libdevel-stacktrace-perl', 'libxml-sax-base-perl', 'libreadonly-perl', 'libsasl2-modules-db:amd64', 'poppler-data', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'dialign-tx-data', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'libxml-dom-perl', 'openssl', 'fontconfig-config', 'libconfig-general-perl', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libclass-accessor-grouped-perl', 'libmultidimensional-perl', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'libalgorithm-munkres-perl', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'ncbi-blast+', 'libdata-page-perl', 'clustalw', 'libncbi6:amd64', 'libgvpr1', 'libgvpr2', 'libisccfg-export90', 'phyml', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'libsql-abstract-perl', 'libapache2-mod-perl2', 'libpackage-deprecationmanager-perl', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'fonts-liberation', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libxau6:amd64', 'libclass-load-perl', 'iproute2', 'krb5-locales', 'exonerate', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libcommon-sense-perl', 'libparams-util-perl', 'iproute', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'apache2.2-bin', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libyaml-0-2:amd64', 'libgdbm3:amd64', 'fontconfig', 'libace-perl', 'infernal', 'libclass-c3-xs-perl', 'libtext-glob-perl', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libbsd0:amd64', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'mafft', 'libclass-makemethods-perl', 'apache2-utils', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'libjpeg8:amd64', 'libtype-tiny-xs-perl', 'emboss-lib', 'libswitch-perl', 'libhttp-message-perl', 'libsub-exporter-perl', 'blast2', 'libio-sessiondata-perl', 'libparams-validate-perl', 'sgml-base', 'libhtml-parser-perl', 'libpod-readme-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libgnutls-deb0-28:amd64', 'libpangox-1.0-0:amd64', 'mime-support', 'libpango1.0-0:amd64', 'libdevel-argnames-perl', 'libgetopt-long-descriptive-perl', 'ncbi-data', 'libharfbuzz0b:amd64', 'perl-tk', 'libbit-vector-perl', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libsm6:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'libtext-reform-perl', 'libsub-identify-perl', 'libio-socket-ip-perl', 'libjson-perl', 'libpaper-utils', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libvariable-magic-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libreadonly-xs-perl', 'libxt6:amd64', 'libmath-spline-perl', 'libffi6:amd64', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libdata-compare-perl', 'libffi5:amd64', 'libindirect-perl', 'libxml-regexp-perl', 'libmodule-find-perl', 'samtools', 'libxtables10', 'libtiff4:amd64', 'probalign', 'libio-pty-perl', 'libpathplan4', 'libnumber-compare-perl', 'libpackage-variant-perl', 'libcrypt-rc4-perl', 'libcgraph6', 'libxaw7:amd64', 'libyaml-syck-perl', 'libcgraph5', 'libgvc5', 'libgvc6', 'libdbix-class-tree-nestedset-perl', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libxml-sax-expat-perl', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'libmailtools-perl', 'libappconfig-perl', 'libdist-checkconflicts-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'libxml-sax-writer-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'apache2-bin', 'libdbicx-testdatabase-perl', 'libsystemd-login0:amd64', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'shared-mime-info', 'libxml2:amd64', 'libsoap-lite-perl', 'libx11-6:amd64', 'libclass-accessor-chained-perl', 'libtree-dagnode-perl', 'tigr-glimmer', 'libclass-base-perl', 'mustang', 'libhash-merge-perl', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'libdata-dumper-concise-perl', 'libperl5.20', 'libparams-classify-perl', 'dialign-tx', 'libclass-tiny-perl', 'libxml-twig-perl', 'libxdmcp6:amd64', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libxml-parser-perl', 'libssl1.0.0:amd64', 'libregexp-common-perl', 'libclass-load-xs-perl', 'libgs9', 'libfreetype6:amd64', 'libxml-perl', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'libpath-class-perl', 'liblwp-protocol-https-perl', 'perl', 'libatm1:amd64', 'libclass-data-inheritable-perl', 'libhttp-daemon-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'netbase', 'libdbix-class-perl', 'libxrender1:amd64', 'libjbig0:amd64', 'libruby1.9.1', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-partialdump-perl', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libclass-c3-componentised-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libhttp-negotiate-perl', 'libunicode-map-perl', 'libaprutil1:amd64', 'file', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'libjson-xs-perl', 'emboss-data', 'libconfig-tiny-perl', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libtemplate-perl', 'libsvg-perl', 'libdevel-caller-perl', 'libbsd-resource-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'libsasl2-2:amd64', 'libcdt5', 'libcdt4', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl'] 2m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg', '--purge', 'libbio-chado-schema-perl'] 2m44.9s DUMP: dpkg: warning: ignoring request to remove libbio-chado-schema-perl which isn't installed 2m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg', '--purge', 'libbio-chado-schema-perl'] 2m44.9s INFO: Running scripts post_purge 2m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_purge_exceptions'] 2m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_purge_exceptions'] 2m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg', '--purge', '--pending'] 2m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg', '--purge', '--pending'] 2m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg', '--remove', '--pending'] 2m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg', '--remove', '--pending'] 2m45.0s INFO: Running scripts post_test 2m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_test_exceptions'] 2m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'tmp/scripts/post_test_exceptions'] 2m45.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 2m45.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 2m45.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg-divert', '--list'] 2m45.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m45.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'dpkg-divert', '--list'] 2m45.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', 'clean'] 2m45.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxCvIgX', 'apt-get', 'clean'] 2m45.7s DEBUG: Recording chroot state 2m46.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/run/shm'] 2m47.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/run/shm'] 2m47.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/console'] 2m47.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/console'] 2m47.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/ptmx'] 2m47.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/ptmx'] 2m47.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/pts'] 2m47.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/dev/pts'] 2m47.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/proc'] 2m47.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxCvIgX/proc'] 2m47.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 2m47.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxCvIgX'] 2m47.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpxCvIgX 2m47.2s INFO: PASS: Upgrading between Debian distributions. 2m47.2s INFO: PASS: All tests. 2m47.2s INFO: piuparts run ends. ret=0 End: 2018-03-15 22:08:47 UTC