Start: 2019-07-02 19:50:49 UTC [wheezy] Package: libbio-ruby1.8 Source: ruby-bio Version: 1.4.2-3 Installed-Size: 78 Maintainer: Debian Ruby Extras Maintainers Architecture: all Depends: ruby-bio Description: Transitional package for ruby-bio Homepage: http://www.bioruby.org/ Description-md5: 50e139bff9fc1afca1065d8e0c73c23b Tag: devel::lang:ruby Section: oldlibs Priority: extra Filename: pool/main/r/ruby-bio/libbio-ruby1.8_1.4.2-3_all.deb Size: 51194 MD5sum: 10d5a79127ecc04256798d5e4c4cfb2b SHA1: cbcabaa8f5bbefccbab7a30c75fc1f66b5d3b542 SHA256: 7029c80db6e03ca382e9b4905d4c0fef836c58caf24ab0cc663d2f24acade102 [jessie] Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie-rcmd/reference-chroot-metadata.dat --apt libbio-ruby1.8=None 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.0.1~201906172054~1.0.0-58-g7dbcf873 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie-rcmd/reference-chroot-metadata.dat --apt libbio-ruby1.8=None 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u3 (2019-06-16) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpUtippM 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpUtippM 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpUtippM', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpUtippM', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpUtippM/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpUtippM/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpUtippM/run/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpUtippM/run/shm'] 0m1.8s DEBUG: sources.list: deb http://archive.debian.org/debian wheezy main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpUtippM/tmp/scripts/ 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpUtippM/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DUMP: Creating /etc/apt/apt.conf.d/unauthenticated-wheezy ... # The Release file is not getting updated. Acquire::Check-Valid-Until "false"; 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', 'update'] 0m6.3s DUMP: Get:1 http://archive.debian.org wheezy Release.gpg [2373 B] Get:2 http://archive.debian.org wheezy Release [191 kB] Get:3 http://archive.debian.org wheezy/main Translation-en [3846 kB] Get:4 http://archive.debian.org wheezy/main amd64 Packages [7634 kB] Fetched 11.7 MB in 3s (3250 kB/s) Reading package lists... 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', 'update'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', '-yf', 'dist-upgrade'] 0m6.5s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', '-yf', 'dist-upgrade'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.7s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.7s INFO: Running scripts post_setup 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_dummy_users'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_dummy_users'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m8.5s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: ucf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 70.8 kB of archives. After this operation, 236 kB of additional disk space will be used. Get:1 http://archive.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.8 kB in 0s (95.8 kB/s) Selecting previously unselected package ucf. (Reading database ... 6639 files and directories currently installed.) Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up ucf (3.0025+nmu3) ... 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_minimize'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_minimize'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_zz_backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_setup_zz_backports'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DUMP: install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie-rcmd/reference-chroot-metadata.dat 0m9.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 0m9.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 0m9.7s INFO: Running scripts is_testable 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/is_testable_uninstallable'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/is_testable_uninstallable'] 0m9.7s INFO: Running scripts pre_test 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_test_exceptions'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_test_exceptions'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_test_root_password'] 0m9.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_test_root_password'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-cache', 'show', '--no-all-versions', 'libbio-ruby1.8'] 0m9.7s DUMP: Package: libbio-ruby1.8 Source: ruby-bio Version: 1.4.2-3 Installed-Size: 78 Maintainer: Debian Ruby Extras Maintainers Architecture: all Depends: ruby-bio Description-en: Transitional package for ruby-bio This is a transitional package to ease upgrades to the ruby-bio package. It can safely be removed. Homepage: http://www.bioruby.org/ Description-md5: 50e139bff9fc1afca1065d8e0c73c23b Tag: devel::lang:ruby Section: oldlibs Priority: extra Filename: pool/main/r/ruby-bio/libbio-ruby1.8_1.4.2-3_all.deb Size: 51194 MD5sum: 10d5a79127ecc04256798d5e4c4cfb2b SHA1: cbcabaa8f5bbefccbab7a30c75fc1f66b5d3b542 SHA256: 7029c80db6e03ca382e9b4905d4c0fef836c58caf24ab0cc663d2f24acade102 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-cache', 'show', '--no-all-versions', 'libbio-ruby1.8'] 0m9.7s INFO: apt-cache knows about the following packages: libbio-ruby1.8 0m9.7s INFO: Running scripts pre_install 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_install_database-server'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_install_database-server'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_install_exceptions'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_install_exceptions'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_install_extras'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_install_extras'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-cache', 'policy'] 0m9.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://archive.debian.org/debian/ wheezy/main Translation-en 500 http://archive.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin archive.debian.org Pinned packages: 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-cache', 'policy'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-cache', 'policy', 'libbio-ruby1.8'] 0m9.8s DUMP: libbio-ruby1.8: Installed: (none) Candidate: 1.4.2-3 Version table: 1.4.2-3 0 500 http://archive.debian.org/debian/ wheezy/main amd64 Packages 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-cache', 'policy', 'libbio-ruby1.8'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', '-y', 'install', 'libbio-ruby1.8'] 0m39.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: blast2 ca-certificates file hmmer ifupdown iproute libatm1 libbsd0 libclass-inspector-perl libclass-isa-perl libconvert-binhex-perl libcrypt-ssleay-perl libencode-locale-perl libexpat1 libfcgi-perl libffi5 libfile-listing-perl libfont-afm-perl libgcrypt11 libgdbm3 libgfortran3 libgnutls26 libgpg-error0 libgpm2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn11 libio-socket-ip-perl libio-socket-ssl-perl libio-stringy-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmime-tools-perl libncbi6 libncursesw5 libnet-http-perl libnet-ssleay-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libquadmath0 libruby1.9.1 libsoap-lite-perl libsocket-perl libssl1.0.0 libswitch-perl libtask-weaken-perl libtasn1-3 libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libyaml-0-2 lynx lynx-cur mafft mime-support muscle ncbi-data netbase openssl perl perl-modules probcons ruby ruby-bio ruby1.9.1 sim4 t-coffee tm-align Suggested packages: libvibrant6a ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 hmmer-doc isc-dhcp-client dhcp-client ppp rdnssd net-tools iproute-doc rng-tools gpm libdata-dump-perl libmime-base64-perl uuid libapache2-mod-perl2 libmime-lite-perl libnet-jabber-perl libauthen-ntlm-perl perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make libpod-plainer-perl probcons-extra ri ruby-dev clustalw emboss ruby1.9.1-examples ri1.9.1 graphviz ruby1.9.1-dev ruby-switch boxshade seaview t-coffee-doc t-coffee-examples dialign-tx kalign poa amap-align proda pymol rasmol The following NEW packages will be installed: blast2 ca-certificates file hmmer ifupdown iproute libatm1 libbio-ruby1.8 libbsd0 libclass-inspector-perl libclass-isa-perl libconvert-binhex-perl libcrypt-ssleay-perl libencode-locale-perl libexpat1 libfcgi-perl libffi5 libfile-listing-perl libfont-afm-perl libgcrypt11 libgdbm3 libgfortran3 libgnutls26 libgpg-error0 libgpm2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn11 libio-socket-ip-perl libio-socket-ssl-perl libio-stringy-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmime-tools-perl libncbi6 libncursesw5 libnet-http-perl libnet-ssleay-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libquadmath0 libruby1.9.1 libsoap-lite-perl libsocket-perl libssl1.0.0 libswitch-perl libtask-weaken-perl libtasn1-3 libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libyaml-0-2 lynx lynx-cur mafft mime-support muscle ncbi-data netbase openssl perl perl-modules probcons ruby ruby-bio ruby1.9.1 sim4 t-coffee tm-align 0 upgraded, 87 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After this operation, 131 MB of additional disk space will be used. Get:1 http://archive.debian.org/debian/ wheezy/main iproute amd64 20120521-3+b3 [459 kB] Get:2 http://archive.debian.org/debian/ wheezy/main ifupdown amd64 0.7.8 [64.9 kB] Get:3 http://archive.debian.org/debian/ wheezy/main libgdbm3 amd64 1.8.3-11 [46.9 kB] Get:4 http://archive.debian.org/debian/ wheezy/main libncursesw5 amd64 5.9-10 [141 kB] Get:5 http://archive.debian.org/debian/ wheezy/main libssl1.0.0 amd64 1.0.1e-2+deb7u20 [1263 kB] Get:6 http://archive.debian.org/debian/ wheezy/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:7 http://archive.debian.org/debian/ wheezy/main libgcrypt11 amd64 1.5.0-5+deb7u4 [301 kB] Get:8 http://archive.debian.org/debian/ wheezy/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:9 http://archive.debian.org/debian/ wheezy/main libtasn1-3 amd64 2.13-2+deb7u2 [67.8 kB] Get:10 http://archive.debian.org/debian/ wheezy/main libgnutls26 amd64 2.12.20-8+deb7u5 [620 kB] Get:11 http://archive.debian.org/debian/ wheezy/main libgpm2 amd64 1.20.4-6 [35.8 kB] Get:12 http://archive.debian.org/debian/ wheezy/main libidn11 amd64 1.25-2 [178 kB] Get:13 http://archive.debian.org/debian/ wheezy/main libmagic1 amd64 5.11-2+deb7u8 [205 kB] Get:14 http://archive.debian.org/debian/ wheezy/main libatm1 amd64 1:2.5.1-1.5 [73.3 kB] Get:15 http://archive.debian.org/debian/ wheezy/main libbsd0 amd64 0.4.2-1 [59.3 kB] Get:16 http://archive.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:17 http://archive.debian.org/debian/ wheezy/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:18 http://archive.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:19 http://archive.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:20 http://archive.debian.org/debian/ wheezy/main ncbi-data all 6.1.20120620-2 [5893 kB] Get:21 http://archive.debian.org/debian/ wheezy/main libncbi6 amd64 6.1.20120620-2 [4887 kB] Get:22 http://archive.debian.org/debian/ wheezy/main libyaml-0-2 amd64 0.1.4-2+deb7u5 [58.3 kB] Get:23 http://archive.debian.org/debian/ wheezy/main mafft amd64 6.864-1 [799 kB] Get:24 http://archive.debian.org/debian/ wheezy/main netbase all 5.0 [20.1 kB] Get:25 http://archive.debian.org/debian/ wheezy/main file amd64 5.11-2+deb7u8 [53.4 kB] Get:26 http://archive.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:27 http://archive.debian.org/debian/ wheezy/main perl-modules all 5.14.2-21+deb7u3 [3444 kB] Get:28 http://archive.debian.org/debian/ wheezy/main perl amd64 5.14.2-21+deb7u3 [4429 kB] Get:29 http://archive.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:30 http://archive.debian.org/debian/ wheezy/main mime-support all 3.52-1+deb7u1 [35.5 kB] Get:31 http://archive.debian.org/debian/ wheezy/main blast2 amd64 1:2.2.26.20120620-2 [682 kB] Get:32 http://archive.debian.org/debian/ wheezy/main openssl amd64 1.0.1e-2+deb7u20 [702 kB] Get:33 http://archive.debian.org/debian/ wheezy/main ca-certificates all 20130119+deb7u1 [210 kB] Get:34 http://archive.debian.org/debian/ wheezy/main hmmer amd64 3.0-4 [2217 kB] Get:35 http://archive.debian.org/debian/ wheezy/main libclass-inspector-perl all 1.27-1 [20.6 kB] Get:36 http://archive.debian.org/debian/ wheezy/main libconvert-binhex-perl all 1.119+pristine-3 [30.3 kB] Get:37 http://archive.debian.org/debian/ wheezy/main libcrypt-ssleay-perl amd64 0.58-1 [51.8 kB] Get:38 http://archive.debian.org/debian/ wheezy/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:39 http://archive.debian.org/debian/ wheezy/main libfcgi-perl amd64 0.74-1+b1 [42.8 kB] Get:40 http://archive.debian.org/debian/ wheezy/main libtimedate-perl all 1.2000-1 [41.2 kB] Get:41 http://archive.debian.org/debian/ wheezy/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:42 http://archive.debian.org/debian/ wheezy/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:43 http://archive.debian.org/debian/ wheezy/main libfont-afm-perl all 1.20-1 [14.4 kB] Get:44 http://archive.debian.org/debian/ wheezy/main liburi-perl all 1.60-1 [100 kB] Get:45 http://archive.debian.org/debian/ wheezy/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:46 http://archive.debian.org/debian/ wheezy/main libhtml-parser-perl amd64 3.69-2 [114 kB] Get:47 http://archive.debian.org/debian/ wheezy/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:48 http://archive.debian.org/debian/ wheezy/main libhttp-message-perl all 6.03-1 [78.5 kB] Get:49 http://archive.debian.org/debian/ wheezy/main libhtml-form-perl all 6.03-1 [23.9 kB] Get:50 http://archive.debian.org/debian/ wheezy/main libhtml-tree-perl all 5.02-1 [225 kB] Get:51 http://archive.debian.org/debian/ wheezy/main libhtml-format-perl all 2.10-1 [42.1 kB] Get:52 http://archive.debian.org/debian/ wheezy/main libhttp-cookies-perl all 6.00-2 [23.5 kB] Get:53 http://archive.debian.org/debian/ wheezy/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:54 http://archive.debian.org/debian/ wheezy/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:55 http://archive.debian.org/debian/ wheezy/main libsocket-perl amd64 2.002-1 [40.0 kB] Get:56 http://archive.debian.org/debian/ wheezy/main libio-socket-ip-perl all 0.16-2 [23.6 kB] Get:57 http://archive.debian.org/debian/ wheezy/main libnet-ssleay-perl amd64 1.48-1+b1 [335 kB] Get:58 http://archive.debian.org/debian/ wheezy/main libio-socket-ssl-perl all 1.76-2 [68.0 kB] Get:59 http://archive.debian.org/debian/ wheezy/main libio-stringy-perl all 2.110-5 [98.3 kB] Get:60 http://archive.debian.org/debian/ wheezy/main libnet-http-perl all 6.03-2 [24.3 kB] Get:61 http://archive.debian.org/debian/ wheezy/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:62 http://archive.debian.org/debian/ wheezy/main libwww-perl all 6.04-1 [203 kB] Get:63 http://archive.debian.org/debian/ wheezy/main liblwp-protocol-https-perl all 6.03-1 [7580 B] Get:64 http://archive.debian.org/debian/ wheezy/main libmailtools-perl all 2.09-1 [97.6 kB] Get:65 http://archive.debian.org/debian/ wheezy/main libmime-tools-perl all 5.503-1 [242 kB] Get:66 http://archive.debian.org/debian/ wheezy/main libossp-uuid16 amd64 1.6.2-1.3 [58.8 kB] Get:67 http://archive.debian.org/debian/ wheezy/main libossp-uuid-perl amd64 1.6.2-1.3 [31.6 kB] Get:68 http://archive.debian.org/debian/ wheezy/main libruby1.9.1 amd64 1.9.3.194-8.1+deb7u5 [4414 kB] Get:69 http://archive.debian.org/debian/ wheezy/main libtask-weaken-perl all 1.03-1 [7690 B] Get:70 http://archive.debian.org/debian/ wheezy/main libxml-parser-perl amd64 2.41-1+b1 [278 kB] Get:71 http://archive.debian.org/debian/ wheezy/main libsoap-lite-perl all 0.714-1 [343 kB] Get:72 http://archive.debian.org/debian/ wheezy/main libxml-namespacesupport-perl all 1.09-3 [15.3 kB] Get:73 http://archive.debian.org/debian/ wheezy/main libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:74 http://archive.debian.org/debian/ wheezy/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:75 http://archive.debian.org/debian/ wheezy/main libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:76 http://archive.debian.org/debian/ wheezy/main libxml-simple-perl all 2.20-1 [74.7 kB] Get:77 http://archive.debian.org/debian/ wheezy/main muscle amd64 1:3.8.31-1 [169 kB] Get:78 http://archive.debian.org/debian/ wheezy/main probcons amd64 1.12-9 [196 kB] Get:79 http://archive.debian.org/debian/ wheezy/main ruby1.9.1 amd64 1.9.3.194-8.1+deb7u5 [209 kB] Get:80 http://archive.debian.org/debian/ wheezy/main ruby all 1:1.9.3 [6484 B] Get:81 http://archive.debian.org/debian/ wheezy/main ruby-bio all 1.4.2-3 [863 kB] Get:82 http://archive.debian.org/debian/ wheezy/main sim4 amd64 0.0.20030921-3 [54.7 kB] Get:83 http://archive.debian.org/debian/ wheezy/main t-coffee amd64 9.02.r1228-2 [848 kB] Get:84 http://archive.debian.org/debian/ wheezy/main tm-align amd64 20120507-1 [62.9 kB] Get:85 http://archive.debian.org/debian/ wheezy/main libbio-ruby1.8 all 1.4.2-3 [51.2 kB] Get:86 http://archive.debian.org/debian/ wheezy/main lynx-cur amd64 2.8.8dev.12-2 [2249 kB] Get:87 http://archive.debian.org/debian/ wheezy/main lynx all 2.8.8dev.12-2 [223 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.1 MB in 19s (2033 kB/s) Selecting previously unselected package iproute. (Reading database ... 6657 files and directories currently installed.) Unpacking iproute (from .../iproute_20120521-3+b3_amd64.deb) ... Selecting previously unselected package ifupdown. Unpacking ifupdown (from .../ifupdown_0.7.8_amd64.deb) ... Selecting previously unselected package libgdbm3:amd64. Unpacking libgdbm3:amd64 (from .../libgdbm3_1.8.3-11_amd64.deb) ... Selecting previously unselected package libncursesw5:amd64. Unpacking libncursesw5:amd64 (from .../libncursesw5_5.9-10_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3.1_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. Unpacking libgcrypt11:amd64 (from .../libgcrypt11_1.5.0-5+deb7u4_amd64.deb) ... Selecting previously unselected package libp11-kit0:amd64. Unpacking libp11-kit0:amd64 (from .../libp11-kit0_0.12-3_amd64.deb) ... Selecting previously unselected package libtasn1-3:amd64. Unpacking libtasn1-3:amd64 (from .../libtasn1-3_2.13-2+deb7u2_amd64.deb) ... Selecting previously unselected package libgnutls26:amd64. Unpacking libgnutls26:amd64 (from .../libgnutls26_2.12.20-8+deb7u5_amd64.deb) ... Selecting previously unselected package libgpm2:amd64. Unpacking libgpm2:amd64 (from .../libgpm2_1.20.4-6_amd64.deb) ... Selecting previously unselected package libidn11:amd64. Unpacking libidn11:amd64 (from .../libidn11_1.25-2_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-2+deb7u8_amd64.deb) ... Selecting previously unselected package libatm1:amd64. Unpacking libatm1:amd64 (from .../libatm1_1%3a2.5.1-1.5_amd64.deb) ... Selecting previously unselected package libbsd0:amd64. Unpacking libbsd0:amd64 (from .../libbsd0_0.4.2-1_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libffi5:amd64. Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Selecting previously unselected package libquadmath0:amd64. Unpacking libquadmath0:amd64 (from .../libquadmath0_4.7.2-5_amd64.deb) ... Selecting previously unselected package libgfortran3:amd64. Unpacking libgfortran3:amd64 (from .../libgfortran3_4.7.2-5_amd64.deb) ... Selecting previously unselected package ncbi-data. Unpacking ncbi-data (from .../ncbi-data_6.1.20120620-2_all.deb) ... Selecting previously unselected package libncbi6:amd64. Unpacking libncbi6:amd64 (from .../libncbi6_6.1.20120620-2_amd64.deb) ... Selecting previously unselected package libyaml-0-2:amd64. Unpacking libyaml-0-2:amd64 (from .../libyaml-0-2_0.1.4-2+deb7u5_amd64.deb) ... Selecting previously unselected package mafft. Unpacking mafft (from .../mafft_6.864-1_amd64.deb) ... Selecting previously unselected package netbase. Unpacking netbase (from .../archives/netbase_5.0_all.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_5.11-2+deb7u8_amd64.deb) ... Selecting previously unselected package libclass-isa-perl. Unpacking libclass-isa-perl (from .../libclass-isa-perl_0.36-3_all.deb) ... Selecting previously unselected package perl-modules. Unpacking perl-modules (from .../perl-modules_5.14.2-21+deb7u3_all.deb) ... Selecting previously unselected package perl. Unpacking perl (from .../perl_5.14.2-21+deb7u3_amd64.deb) ... Selecting previously unselected package libswitch-perl. Unpacking libswitch-perl (from .../libswitch-perl_2.16-2_all.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.52-1+deb7u1_all.deb) ... Selecting previously unselected package blast2. Unpacking blast2 (from .../blast2_1%3a2.2.26.20120620-2_amd64.deb) ... Selecting previously unselected package openssl. Unpacking openssl (from .../openssl_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package ca-certificates. Unpacking ca-certificates (from .../ca-certificates_20130119+deb7u1_all.deb) ... Selecting previously unselected package hmmer. Unpacking hmmer (from .../archives/hmmer_3.0-4_amd64.deb) ... Selecting previously unselected package libclass-inspector-perl. Unpacking libclass-inspector-perl (from .../libclass-inspector-perl_1.27-1_all.deb) ... Selecting previously unselected package libconvert-binhex-perl. Unpacking libconvert-binhex-perl (from .../libconvert-binhex-perl_1.119+pristine-3_all.deb) ... Selecting previously unselected package libcrypt-ssleay-perl. Unpacking libcrypt-ssleay-perl (from .../libcrypt-ssleay-perl_0.58-1_amd64.deb) ... Selecting previously unselected package libencode-locale-perl. Unpacking libencode-locale-perl (from .../libencode-locale-perl_1.03-1_all.deb) ... Selecting previously unselected package libfcgi-perl. Unpacking libfcgi-perl (from .../libfcgi-perl_0.74-1+b1_amd64.deb) ... Selecting previously unselected package libtimedate-perl. Unpacking libtimedate-perl (from .../libtimedate-perl_1.2000-1_all.deb) ... Selecting previously unselected package libhttp-date-perl. Unpacking libhttp-date-perl (from .../libhttp-date-perl_6.02-1_all.deb) ... Selecting previously unselected package libfile-listing-perl. Unpacking libfile-listing-perl (from .../libfile-listing-perl_6.04-1_all.deb) ... Selecting previously unselected package libfont-afm-perl. Unpacking libfont-afm-perl (from .../libfont-afm-perl_1.20-1_all.deb) ... Selecting previously unselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.60-1_all.deb) ... Selecting previously unselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously unselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.69-2_amd64.deb) ... Selecting previously unselected package liblwp-mediatypes-perl. Unpacking liblwp-mediatypes-perl (from .../liblwp-mediatypes-perl_6.02-1_all.deb) ... Selecting previously unselected package libhttp-message-perl. Unpacking libhttp-message-perl (from .../libhttp-message-perl_6.03-1_all.deb) ... Selecting previously unselected package libhtml-form-perl. Unpacking libhtml-form-perl (from .../libhtml-form-perl_6.03-1_all.deb) ... Selecting previously unselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_5.02-1_all.deb) ... Selecting previously unselected package libhtml-format-perl. Unpacking libhtml-format-perl (from .../libhtml-format-perl_2.10-1_all.deb) ... Selecting previously unselected package libhttp-cookies-perl. Unpacking libhttp-cookies-perl (from .../libhttp-cookies-perl_6.00-2_all.deb) ... Selecting previously unselected package libhttp-daemon-perl. Unpacking libhttp-daemon-perl (from .../libhttp-daemon-perl_6.01-1_all.deb) ... Selecting previously unselected package libhttp-negotiate-perl. Unpacking libhttp-negotiate-perl (from .../libhttp-negotiate-perl_6.00-2_all.deb) ... Selecting previously unselected package libsocket-perl. Unpacking libsocket-perl (from .../libsocket-perl_2.002-1_amd64.deb) ... Selecting previously unselected package libio-socket-ip-perl. Unpacking libio-socket-ip-perl (from .../libio-socket-ip-perl_0.16-2_all.deb) ... Selecting previously unselected package libnet-ssleay-perl. Unpacking libnet-ssleay-perl (from .../libnet-ssleay-perl_1.48-1+b1_amd64.deb) ... Selecting previously unselected package libio-socket-ssl-perl. Unpacking libio-socket-ssl-perl (from .../libio-socket-ssl-perl_1.76-2_all.deb) ... Selecting previously unselected package libio-stringy-perl. Unpacking libio-stringy-perl (from .../libio-stringy-perl_2.110-5_all.deb) ... Selecting previously unselected package libnet-http-perl. Unpacking libnet-http-perl (from .../libnet-http-perl_6.03-2_all.deb) ... Selecting previously unselected package libwww-robotrules-perl. Unpacking libwww-robotrules-perl (from .../libwww-robotrules-perl_6.01-1_all.deb) ... Selecting previously unselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_6.04-1_all.deb) ... Selecting previously unselected package liblwp-protocol-https-perl. Unpacking liblwp-protocol-https-perl (from .../liblwp-protocol-https-perl_6.03-1_all.deb) ... Selecting previously unselected package libmailtools-perl. Unpacking libmailtools-perl (from .../libmailtools-perl_2.09-1_all.deb) ... Selecting previously unselected package libmime-tools-perl. Unpacking libmime-tools-perl (from .../libmime-tools-perl_5.503-1_all.deb) ... Selecting previously unselected package libossp-uuid16. Unpacking libossp-uuid16 (from .../libossp-uuid16_1.6.2-1.3_amd64.deb) ... Selecting previously unselected package libossp-uuid-perl. Unpacking libossp-uuid-perl (from .../libossp-uuid-perl_1.6.2-1.3_amd64.deb) ... Selecting previously unselected package libruby1.9.1. Unpacking libruby1.9.1 (from .../libruby1.9.1_1.9.3.194-8.1+deb7u5_amd64.deb) ... Selecting previously unselected package libtask-weaken-perl. Unpacking libtask-weaken-perl (from .../libtask-weaken-perl_1.03-1_all.deb) ... Selecting previously unselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.41-1+b1_amd64.deb) ... Selecting previously unselected package libsoap-lite-perl. Unpacking libsoap-lite-perl (from .../libsoap-lite-perl_0.714-1_all.deb) ... Selecting previously unselected package libxml-namespacesupport-perl. Unpacking libxml-namespacesupport-perl (from .../libxml-namespacesupport-perl_1.09-3_all.deb) ... Selecting previously unselected package libxml-sax-base-perl. Unpacking libxml-sax-base-perl (from .../libxml-sax-base-perl_1.07-1_all.deb) ... Selecting previously unselected package libxml-sax-perl. Unpacking libxml-sax-perl (from .../libxml-sax-perl_0.99+dfsg-2_all.deb) ... Selecting previously unselected package libxml-sax-expat-perl. Unpacking libxml-sax-expat-perl (from .../libxml-sax-expat-perl_0.40-2_all.deb) ... Selecting previously unselected package libxml-simple-perl. Unpacking libxml-simple-perl (from .../libxml-simple-perl_2.20-1_all.deb) ... Selecting previously unselected package muscle. Unpacking muscle (from .../muscle_1%3a3.8.31-1_amd64.deb) ... Selecting previously unselected package probcons. Unpacking probcons (from .../probcons_1.12-9_amd64.deb) ... Selecting previously unselected package ruby1.9.1. Unpacking ruby1.9.1 (from .../ruby1.9.1_1.9.3.194-8.1+deb7u5_amd64.deb) ... Selecting previously unselected package ruby. Unpacking ruby (from .../ruby_1%3a1.9.3_all.deb) ... Selecting previously unselected package ruby-bio. Unpacking ruby-bio (from .../ruby-bio_1.4.2-3_all.deb) ... Selecting previously unselected package sim4. Unpacking sim4 (from .../sim4_0.0.20030921-3_amd64.deb) ... Selecting previously unselected package t-coffee. Unpacking t-coffee (from .../t-coffee_9.02.r1228-2_amd64.deb) ... Selecting previously unselected package tm-align. Unpacking tm-align (from .../tm-align_20120507-1_amd64.deb) ... Selecting previously unselected package libbio-ruby1.8. Unpacking libbio-ruby1.8 (from .../libbio-ruby1.8_1.4.2-3_all.deb) ... Selecting previously unselected package lynx-cur. Unpacking lynx-cur (from .../lynx-cur_2.8.8dev.12-2_amd64.deb) ... Selecting previously unselected package lynx. Unpacking lynx (from .../lynx_2.8.8dev.12-2_all.deb) ... Setting up iproute (20120521-3+b3) ... Setting up ifupdown (0.7.8) ... Creating /etc/network/interfaces. Setting up libgdbm3:amd64 (1.8.3-11) ... Setting up libncursesw5:amd64 (5.9-10) ... Setting up libssl1.0.0:amd64 (1.0.1e-2+deb7u20) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2+deb7u2) ... Setting up libgnutls26:amd64 (2.12.20-8+deb7u5) ... Setting up libgpm2:amd64 (1.20.4-6) ... Setting up libidn11:amd64 (1.25-2) ... Setting up libmagic1:amd64 (5.11-2+deb7u8) ... Setting up libatm1:amd64 (1:2.5.1-1.5) ... Setting up libbsd0:amd64 (0.4.2-1) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u2) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libquadmath0:amd64 (4.7.2-5) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up ncbi-data (6.1.20120620-2) ... Setting up libncbi6:amd64 (6.1.20120620-2) ... Setting up libyaml-0-2:amd64 (0.1.4-2+deb7u5) ... Setting up mafft (6.864-1) ... Setting up netbase (5.0) ... Setting up file (5.11-2+deb7u8) ... Setting up libclass-isa-perl (0.36-3) ... Setting up mime-support (3.52-1+deb7u1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up blast2 (1:2.2.26.20120620-2) ... Setting up openssl (1.0.1e-2+deb7u20) ... Setting up ca-certificates (20130119+deb7u1) ... Setting up hmmer (3.0-4) ... Setting up libossp-uuid16 (1.6.2-1.3) ... Setting up libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Setting up muscle (1:3.8.31-1) ... Setting up probcons (1.12-9) ... Setting up ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... update-alternatives: using /usr/bin/gem1.9.1 to provide /usr/bin/gem (gem) in auto mode update-alternatives: using /usr/bin/ruby1.9.1 to provide /usr/bin/ruby (ruby) in auto mode Setting up ruby (1:1.9.3) ... Setting up ruby-bio (1.4.2-3) ... Setting up sim4 (0.0.20030921-3) ... Setting up t-coffee (9.02.r1228-2) ... Setting up tm-align (20120507-1) ... Setting up libbio-ruby1.8 (1.4.2-3) ... Setting up lynx-cur (2.8.8dev.12-2) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx (2.8.8dev.12-2) ... Setting up libswitch-perl (2.16-2) ... Setting up perl-modules (5.14.2-21+deb7u3) ... Setting up perl (5.14.2-21+deb7u3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libclass-inspector-perl (1.27-1) ... Setting up libconvert-binhex-perl (1.119+pristine-3) ... Setting up libcrypt-ssleay-perl (0.58-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libfcgi-perl (0.74-1+b1) ... Setting up libtimedate-perl (1.2000-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libfont-afm-perl (1.20-1) ... Setting up liburi-perl (1.60-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-2) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.03-1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libhtml-tree-perl (5.02-1) ... Setting up libhtml-format-perl (2.10-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libsocket-perl (2.002-1) ... Setting up libio-socket-ip-perl (0.16-2) ... Setting up libnet-ssleay-perl (1.48-1+b1) ... Setting up libio-socket-ssl-perl (1.76-2) ... Setting up libio-stringy-perl (2.110-5) ... Setting up libnet-http-perl (6.03-2) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up liblwp-protocol-https-perl (6.03-1) ... Setting up libmailtools-perl (2.09-1) ... Setting up libmime-tools-perl (5.503-1) ... Setting up libossp-uuid-perl (1.6.2-1.3) ... Setting up libtask-weaken-perl (1.03-1) ... Setting up libxml-namespacesupport-perl (1.09-3) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libwww-perl (6.04-1) ... Setting up libxml-parser-perl (2.41-1+b1) ... Setting up libsoap-lite-perl (0.714-1) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-simple-perl (2.20-1) ... Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 171 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', '-y', 'install', 'libbio-ruby1.8'] 0m39.1s INFO: Running scripts post_install 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_install_exceptions'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_install_exceptions'] 0m39.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 0m39.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 0m39.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpUtippM to jessie 0m39.8s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ jessie main 0m39.8s INFO: Running scripts pre_distupgrade 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m39.8s DUMP: removed `/etc/apt/apt.conf.d/unauthenticated-wheezy' 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_distupgrade_exceptions'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_distupgrade_exceptions'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', 'update'] 0m43.0s DUMP: Get:1 http://mirror-ubc.debian.org jessie Release.gpg [2420 B] Get:2 http://mirror-ubc.debian.org jessie Release [148 kB] Get:3 http://mirror-ubc.debian.org jessie/main amd64 Packages [6818 kB] Get:4 http://mirror-ubc.debian.org jessie/main Translation-en [4581 kB] Fetched 11.5 MB in 1s (6153 kB/s) Reading package lists... 0m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', 'update'] 0m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', '-yf', 'dist-upgrade'] 1m23.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gcc-4.7-base The following NEW packages will be installed: acl adduser amap-align clustalo clustalw dbus dialign-tx dialign-tx-data dmsetup gcc-4.9-base init iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign libalgorithm-c3-perl libarchive-extract-perl libargtable2-0 libaudit-common libaudit1 libauthen-sasl-perl libcap-ng0 libcap2 libcap2-bin libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl libcpan-meta-perl libcryptsetup4 libdata-optlist-perl libdata-section-perl libdb5.3 libdbus-1-3 libdebconfclient0 libdevmapper1.02.1 libdns-export100 libffi6 libgcrypt20 libgmp10 libgnutls-deb0-28 libgomp1 libhogweed2 libio-html-perl libio-sessiondata-perl libirs-export91 libisc-export95 libisccfg-export90 libjs-jquery libkmod2 liblog-message-perl liblog-message-simple-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmro-compat-perl libnet-smtp-ssl-perl libnettle4 libpackage-constants-perl libpam-cap libpam-systemd libparams-util-perl libpcre3 libpod-latex-perl libpod-readme-perl libprocps3 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libregexp-common-perl libruby2.1 libsmartcols1 libsoftware-license-perl libsqlite3-0 libsub-exporter-perl libsub-install-perl libsystemd0 libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libudev1 libxmlrpc-lite-perl libxtables10 mustang ncbi-blast+ poa prank procps proda psmisc python python-minimal python2.7 python2.7-minimal rename ruby2.1 rubygems-integration startpar systemd systemd-sysv udev The following packages will be upgraded: apt base-files base-passwd bash blast2 bsdutils ca-certificates coreutils dash debconf debconf-i18n debian-archive-keyring debianutils diffutils dpkg e2fslibs e2fsprogs file findutils gnupg gpgv grep gzip hmmer hostname ifupdown initscripts iproute libacl1 libapt-pkg4.12 libattr1 libblkid1 libbsd0 libbz2-1.0 libc-bin libc6 libclass-inspector-perl libclass-isa-perl libcomerr2 libconvert-binhex-perl libcrypt-ssleay-perl libexpat1 libfcgi-perl libgcc1 libgdbm3 libgfortran3 libgpg-error0 libgpm2 libhtml-format-perl libhtml-parser-perl libhtml-tree-perl libhttp-cookies-perl libhttp-message-perl libidn11 libio-socket-ip-perl libio-socket-ssl-perl liblocale-gettext-perl liblwp-protocol-https-perl liblzma5 libmagic1 libmailtools-perl libmime-tools-perl libmount1 libncbi6 libncurses5 libncursesw5 libnet-http-perl libnet-ssleay-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libquadmath0 libreadline6 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsoap-lite-perl libsocket-perl libss2 libssl1.0.0 libstdc++6 libswitch-perl libtask-weaken-perl libtext-charwidth-perl libtext-iconv-perl libtimedate-perl libtinfo5 liburi-perl libusb-0.1-4 libustr-1.0-1 libuuid1 libwww-perl libxml-namespacesupport-perl libxml-parser-perl libyaml-0-2 login lsb-base lynx lynx-cur mafft mime-support mount multiarch-support ncbi-data ncurses-base ncurses-bin netbase openssl passwd perl perl-base perl-modules readline-common ruby ruby-bio sed sensible-utils sim4 sysv-rc sysvinit sysvinit-utils t-coffee tar tm-align tzdata ucf util-linux xz-utils zlib1g 135 upgraded, 103 newly installed, 1 to remove and 0 not upgraded. Need to get 83.3 MB of archives. After this operation, 130 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ jessie/main libc6 amd64 2.19-18+deb8u10 [4665 kB] Get:2 http://mirror-ubc.debian.org/debian/ jessie/main libc-bin amd64 2.19-18+deb8u10 [1281 kB] Get:3 http://mirror-ubc.debian.org/debian/ jessie/main gcc-4.9-base amd64 4.9.2-10+deb8u1 [160 kB] Get:4 http://mirror-ubc.debian.org/debian/ jessie/main libstdc++6 amd64 4.9.2-10+deb8u1 [273 kB] Get:5 http://mirror-ubc.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:6 http://mirror-ubc.debian.org/debian/ jessie/main libgcc1 amd64 1:4.9.2-10+deb8u1 [39.5 kB] Get:7 http://mirror-ubc.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:8 http://mirror-ubc.debian.org/debian/ jessie/main base-files amd64 8+deb8u11 [78.2 kB] Get:9 http://mirror-ubc.debian.org/debian/ jessie/main sensible-utils all 0.0.9+deb8u1 [10.9 kB] Get:10 http://mirror-ubc.debian.org/debian/ jessie/main debianutils amd64 4.4+b1 [99.1 kB] Get:11 http://mirror-ubc.debian.org/debian/ jessie/main bash amd64 4.3-11+deb8u1 [1172 kB] Get:12 http://mirror-ubc.debian.org/debian/ jessie/main libgpg-error0 amd64 1.17-3 [94.9 kB] Get:13 http://mirror-ubc.debian.org/debian/ jessie/main libgcrypt20 amd64 1.6.3-2+deb8u4 [392 kB] Get:14 http://mirror-ubc.debian.org/debian/ jessie/main libsystemd0 amd64 215-17+deb8u7 [89.4 kB] Get:15 http://mirror-ubc.debian.org/debian/ jessie/main bsdutils amd64 1:2.25.2-6 [94.0 kB] Get:16 http://mirror-ubc.debian.org/debian/ jessie/main libpcre3 amd64 2:8.35-3.3+deb8u4 [322 kB] Get:17 http://mirror-ubc.debian.org/debian/ jessie/main libselinux1 amd64 2.3-2 [89.8 kB] Get:18 http://mirror-ubc.debian.org/debian/ jessie/main coreutils amd64 8.23-4 [2727 kB] Get:19 http://mirror-ubc.debian.org/debian/ jessie/main dpkg amd64 1.17.27 [2994 kB] Get:20 http://mirror-ubc.debian.org/debian/ jessie/main dash amd64 0.5.7-4+b1 [109 kB] Get:21 http://mirror-ubc.debian.org/debian/ jessie/main diffutils amd64 1:3.3-1+b1 [267 kB] Get:22 http://mirror-ubc.debian.org/debian/ jessie/main e2fslibs amd64 1.42.12-2+b1 [186 kB] Get:23 http://mirror-ubc.debian.org/debian/ jessie/main e2fsprogs amd64 1.42.12-2+b1 [750 kB] Get:24 http://mirror-ubc.debian.org/debian/ jessie/main findutils amd64 4.4.2-9+b1 [485 kB] Get:25 http://mirror-ubc.debian.org/debian/ jessie/main grep amd64 2.20-4.1 [325 kB] Get:26 http://mirror-ubc.debian.org/debian/ jessie/main gzip amd64 1.6-4 [111 kB] Get:27 http://mirror-ubc.debian.org/debian/ jessie/main hostname amd64 3.15 [13.9 kB] Get:28 http://mirror-ubc.debian.org/debian/ jessie/main libaudit-common all 1:2.4-1 [13.5 kB] Get:29 http://mirror-ubc.debian.org/debian/ jessie/main libaudit1 amd64 1:2.4-1+b1 [44.7 kB] Get:30 http://mirror-ubc.debian.org/debian/ jessie/main libattr1 amd64 1:2.4.47-2 [18.3 kB] Get:31 http://mirror-ubc.debian.org/debian/ jessie/main libcap2 amd64 1:2.24-8 [15.3 kB] Get:32 http://mirror-ubc.debian.org/debian/ jessie/main libudev1 amd64 215-17+deb8u7 [57.8 kB] Get:33 http://mirror-ubc.debian.org/debian/ jessie/main libdb5.3 amd64 5.3.28-9+deb8u1 [680 kB] Get:34 http://mirror-ubc.debian.org/debian/ jessie/main iproute all 1:3.16.0-2 [15.5 kB] Get:35 http://mirror-ubc.debian.org/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB] Get:36 http://mirror-ubc.debian.org/debian/ jessie/main adduser all 3.113+nmu3 [264 kB] Get:37 http://mirror-ubc.debian.org/debian/ jessie/main startpar amd64 0.59-3 [21.8 kB] Get:38 http://mirror-ubc.debian.org/debian/ jessie/main sysvinit-utils amd64 2.88dsf-59 [84.4 kB] Get:39 http://mirror-ubc.debian.org/debian/ jessie/main sysv-rc all 2.88dsf-59 [82.8 kB] Get:40 http://mirror-ubc.debian.org/debian/ jessie/main libmount1 amd64 2.25.2-6 [164 kB] Get:41 http://mirror-ubc.debian.org/debian/ jessie/main libsmartcols1 amd64 2.25.2-6 [110 kB] Get:42 http://mirror-ubc.debian.org/debian/ jessie/main mount amd64 2.25.2-6 [168 kB] Get:43 http://mirror-ubc.debian.org/debian/ jessie/main lsb-base all 4.1+Debian13+nmu1 [26.7 kB] Get:44 http://mirror-ubc.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:45 http://mirror-ubc.debian.org/debian/ jessie/main ifupdown amd64 0.7.53.1 [67.2 kB] Get:46 http://mirror-ubc.debian.org/debian/ jessie/main initscripts amd64 2.88dsf-59 [87.2 kB] Get:47 http://mirror-ubc.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:48 http://mirror-ubc.debian.org/debian/ jessie/main libio-socket-ip-perl all 0.32-1 [28.1 kB] Get:49 http://mirror-ubc.debian.org/debian/ jessie/main libsocket-perl amd64 2.016-1 [37.2 kB] Get:50 http://mirror-ubc.debian.org/debian/ jessie/main libtext-charwidth-perl amd64 0.04-7+b3 [10.7 kB] Get:51 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:52 http://mirror-ubc.debian.org/debian/ jessie/main perl-base amd64 5.20.2-3+deb8u11 [1230 kB] Get:53 http://mirror-ubc.debian.org/debian/ jessie/main liblocale-gettext-perl amd64 1.05-8+b1 [19.0 kB] Get:54 http://mirror-ubc.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:55 http://mirror-ubc.debian.org/debian/ jessie/main libtext-iconv-perl amd64 1.7-5+b2 [16.2 kB] Get:56 http://mirror-ubc.debian.org/debian/ jessie/main libcrypt-ssleay-perl amd64 0.58-1+b2 [45.8 kB] Get:57 http://mirror-ubc.debian.org/debian/ jessie/main libossp-uuid-perl amd64 1.6.2-1.5+b1 [30.2 kB] Get:58 http://mirror-ubc.debian.org/debian/ jessie/main libfcgi-perl amd64 0.77-1+deb8u1 [39.0 kB] Get:59 http://mirror-ubc.debian.org/debian/ jessie/main libxml-parser-perl amd64 2.41-3 [215 kB] Get:60 http://mirror-ubc.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:61 http://mirror-ubc.debian.org/debian/ jessie/main libbz2-1.0 amd64 1.0.6-7+b3 [43.5 kB] Get:62 http://mirror-ubc.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:63 http://mirror-ubc.debian.org/debian/ jessie/main zlib1g amd64 1:1.2.8.dfsg-2+b1 [88.8 kB] Get:64 http://mirror-ubc.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:65 http://mirror-ubc.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:66 http://mirror-ubc.debian.org/debian/ jessie/main libossp-uuid16 amd64 1.6.2-1.5+b1 [38.0 kB] Get:67 http://mirror-ubc.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:68 http://mirror-ubc.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:69 http://mirror-ubc.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:70 http://mirror-ubc.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:71 http://mirror-ubc.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:72 http://mirror-ubc.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:73 http://mirror-ubc.debian.org/debian/ jessie/main libsoap-lite-perl all 1.11-1 [272 kB] Get:74 http://mirror-ubc.debian.org/debian/ jessie/main libio-sessiondata-perl all 1.03-1 [5782 B] Get:75 http://mirror-ubc.debian.org/debian/ jessie/main libclass-inspector-perl all 1.28-1 [20.8 kB] Get:76 http://mirror-ubc.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:77 http://mirror-ubc.debian.org/debian/ jessie/main libconvert-binhex-perl all 1.123-2 [30.2 kB] Get:78 http://mirror-ubc.debian.org/debian/ jessie/main libnet-smtp-ssl-perl all 1.01-3 [5996 B] Get:79 http://mirror-ubc.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:80 http://mirror-ubc.debian.org/debian/ jessie/main libmailtools-perl all 2.13-1 [96.6 kB] Get:81 http://mirror-ubc.debian.org/debian/ jessie/main libmime-tools-perl all 5.505-1 [226 kB] Get:82 http://mirror-ubc.debian.org/debian/ jessie/main libtask-weaken-perl all 1.04-1 [7990 B] Get:83 http://mirror-ubc.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u8 [664 kB] Get:84 http://mirror-ubc.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:85 http://mirror-ubc.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:86 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:87 http://mirror-ubc.debian.org/debian/ jessie/main debconf all 1.5.56+deb8u1 [167 kB] Get:88 http://mirror-ubc.debian.org/debian/ jessie/main libpam0g amd64 1.1.8-3.1+deb8u2+b1 [126 kB] Get:89 http://mirror-ubc.debian.org/debian/ jessie/main libsemanage-common all 2.3-1 [24.6 kB] Get:90 http://mirror-ubc.debian.org/debian/ jessie/main libsemanage1 amd64 2.3-1+b1 [90.2 kB] Get:91 http://mirror-ubc.debian.org/debian/ jessie/main libsepol1 amd64 2.3-2 [127 kB] Get:92 http://mirror-ubc.debian.org/debian/ jessie/main libustr-1.0-1 amd64 1.0.4-3+b2 [79.6 kB] Get:93 http://mirror-ubc.debian.org/debian/ jessie/main libpam-modules-bin amd64 1.1.8-3.1+deb8u2+b1 [104 kB] Get:94 http://mirror-ubc.debian.org/debian/ jessie/main libpam-modules amd64 1.1.8-3.1+deb8u2+b1 [307 kB] Get:95 http://mirror-ubc.debian.org/debian/ jessie/main passwd amd64 1:4.2-3+deb8u4 [971 kB] Get:96 http://mirror-ubc.debian.org/debian/ jessie/main libuuid1 amd64 2.25.2-6 [64.7 kB] Get:97 http://mirror-ubc.debian.org/debian/ jessie/main libblkid1 amd64 2.25.2-6 [156 kB] Get:98 http://mirror-ubc.debian.org/debian/ jessie/main tzdata all 2018e-0+deb8u1 [233 kB] Get:99 http://mirror-ubc.debian.org/debian/ jessie/main util-linux amd64 2.25.2-6 [845 kB] Get:100 http://mirror-ubc.debian.org/debian/ jessie/main libdevmapper1.02.1 amd64 2:1.02.90-2.2+deb8u1 [145 kB] Get:101 http://mirror-ubc.debian.org/debian/ jessie/main dmsetup amd64 2:1.02.90-2.2+deb8u1 [69.1 kB] Get:102 http://mirror-ubc.debian.org/debian/ jessie/main libcryptsetup4 amd64 2:1.6.6-5 [103 kB] Get:103 http://mirror-ubc.debian.org/debian/ jessie/main libkmod2 amd64 18-3 [46.2 kB] Get:104 http://mirror-ubc.debian.org/debian/ jessie/main libprocps3 amd64 2:3.3.9-9+deb8u1 [56.7 kB] Get:105 http://mirror-ubc.debian.org/debian/ jessie/main libtinfo5 amd64 5.9+20140913-1+deb8u3 [282 kB] Get:106 http://mirror-ubc.debian.org/debian/ jessie/main libncurses5 amd64 5.9+20140913-1+deb8u3 [96.6 kB] Get:107 http://mirror-ubc.debian.org/debian/ jessie/main libncursesw5 amd64 5.9+20140913-1+deb8u3 [123 kB] Get:108 http://mirror-ubc.debian.org/debian/ jessie/main procps amd64 2:3.3.9-9+deb8u1 [236 kB] Get:109 http://mirror-ubc.debian.org/debian/ jessie/main libacl1 amd64 2.2.52-2 [27.9 kB] Get:110 http://mirror-ubc.debian.org/debian/ jessie/main udev amd64 215-17+deb8u7 [876 kB] Get:111 http://mirror-ubc.debian.org/debian/ jessie/main acl amd64 2.2.52-2 [58.4 kB] Get:112 http://mirror-ubc.debian.org/debian/ jessie/main libcap2-bin amd64 1:2.24-8 [25.4 kB] Get:113 http://mirror-ubc.debian.org/debian/ jessie/main systemd amd64 215-17+deb8u7 [2545 kB] Get:114 http://mirror-ubc.debian.org/debian/ jessie/main systemd-sysv amd64 215-17+deb8u7 [36.7 kB] Get:115 http://mirror-ubc.debian.org/debian/ jessie/main init amd64 1.22 [4674 B] Get:116 http://mirror-ubc.debian.org/debian/ jessie/main login amd64 1:4.2-3+deb8u4 [722 kB] Get:117 http://mirror-ubc.debian.org/debian/ jessie/main ncurses-bin amd64 5.9+20140913-1+deb8u3 [347 kB] Get:118 http://mirror-ubc.debian.org/debian/ jessie/main sed amd64 4.2.2-4+deb8u1 [243 kB] Get:119 http://mirror-ubc.debian.org/debian/ jessie/main tar amd64 1.27.1-2+deb8u1 [676 kB] Get:120 http://mirror-ubc.debian.org/debian/ jessie/main sysvinit amd64 2.88dsf-59 [99.9 kB] Get:121 http://mirror-ubc.debian.org/debian/ jessie/main liblzma5 amd64 5.1.1alpha+20120614-2+b3 [194 kB] Get:122 http://mirror-ubc.debian.org/debian/ jessie/main libapt-pkg4.12 amd64 1.0.9.8.4 [792 kB] Get:123 http://mirror-ubc.debian.org/debian/ jessie/main gpgv amd64 1.4.18-7+deb8u5 [209 kB] Get:124 http://mirror-ubc.debian.org/debian/ jessie/main debian-archive-keyring all 2017.5~deb8u1 [56.7 kB] Get:125 http://mirror-ubc.debian.org/debian/ jessie/main readline-common all 6.3-8 [57.7 kB] Get:126 http://mirror-ubc.debian.org/debian/ jessie/main libreadline6 amd64 6.3-8+b3 [143 kB] Get:127 http://mirror-ubc.debian.org/debian/ jessie/main libusb-0.1-4 amd64 2:0.1.12-25 [21.9 kB] Get:128 http://mirror-ubc.debian.org/debian/ jessie/main gnupg amd64 1.4.18-7+deb8u5 [1150 kB] Get:129 http://mirror-ubc.debian.org/debian/ jessie/main apt amd64 1.0.9.8.4 [1109 kB] Get:130 http://mirror-ubc.debian.org/debian/ jessie/main libdebconfclient0 amd64 0.192 [46.2 kB] Get:131 http://mirror-ubc.debian.org/debian/ jessie/main base-passwd amd64 3.5.37 [64.5 kB] Get:132 http://mirror-ubc.debian.org/debian/ jessie/main ncurses-base all 5.9+20140913-1+deb8u3 [222 kB] Get:133 http://mirror-ubc.debian.org/debian/ jessie/main libslang2 amd64 2.3.0-2 [491 kB] Get:134 http://mirror-ubc.debian.org/debian/ jessie/main libcomerr2 amd64 1.42.12-2+b1 [60.7 kB] Get:135 http://mirror-ubc.debian.org/debian/ jessie/main libss2 amd64 1.42.12-2+b1 [65.0 kB] Get:136 http://mirror-ubc.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:137 http://mirror-ubc.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:138 http://mirror-ubc.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:139 http://mirror-ubc.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:140 http://mirror-ubc.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:141 http://mirror-ubc.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:142 http://mirror-ubc.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:143 http://mirror-ubc.debian.org/debian/ jessie/main libgpm2 amd64 1.20.4-6.1+b2 [34.0 kB] Get:144 http://mirror-ubc.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:145 http://mirror-ubc.debian.org/debian/ jessie/main file amd64 1:5.22+15-2+deb8u4 [60.5 kB] Get:146 http://mirror-ubc.debian.org/debian/ jessie/main libmagic1 amd64 1:5.22+15-2+deb8u4 [250 kB] Get:147 http://mirror-ubc.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:148 http://mirror-ubc.debian.org/debian/ jessie/main libpython2.7-minimal amd64 2.7.9-2+deb8u1 [378 kB] Get:149 http://mirror-ubc.debian.org/debian/ jessie/main python2.7-minimal amd64 2.7.9-2+deb8u1 [1401 kB] Get:150 http://mirror-ubc.debian.org/debian/ jessie/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:151 http://mirror-ubc.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:152 http://mirror-ubc.debian.org/debian/ jessie/main libpython2.7-stdlib amd64 2.7.9-2+deb8u1 [1847 kB] Get:153 http://mirror-ubc.debian.org/debian/ jessie/main python2.7 amd64 2.7.9-2+deb8u1 [252 kB] Get:154 http://mirror-ubc.debian.org/debian/ jessie/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:155 http://mirror-ubc.debian.org/debian/ jessie/main python amd64 2.7.9-1 [151 kB] Get:156 http://mirror-ubc.debian.org/debian/ jessie/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:157 http://mirror-ubc.debian.org/debian/ jessie/main libcap-ng0 amd64 0.7.4-2 [13.2 kB] Get:158 http://mirror-ubc.debian.org/debian/ jessie/main libdbus-1-3 amd64 1.8.22-0+deb8u1 [170 kB] Get:159 http://mirror-ubc.debian.org/debian/ jessie/main libisc-export95 amd64 1:9.9.5.dfsg-9+deb8u15 [141 kB] Get:160 http://mirror-ubc.debian.org/debian/ jessie/main libdns-export100 amd64 1:9.9.5.dfsg-9+deb8u15 [457 kB] Get:161 http://mirror-ubc.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10+deb8u1 [37.8 kB] Get:162 http://mirror-ubc.debian.org/debian/ jessie/main libisccfg-export90 amd64 1:9.9.5.dfsg-9+deb8u15 [41.5 kB] Get:163 http://mirror-ubc.debian.org/debian/ jessie/main libirs-export91 amd64 1:9.9.5.dfsg-9+deb8u15 [39.2 kB] Get:164 http://mirror-ubc.debian.org/debian/ jessie/main libncbi6 amd64 6.1.20120620-8 [3769 kB] Get:165 http://mirror-ubc.debian.org/debian/ jessie/main ncbi-data all 6.1.20120620-8 [3320 kB] Get:166 http://mirror-ubc.debian.org/debian/ jessie/main libpam-runtime all 1.1.8-3.1+deb8u2 [212 kB] Get:167 http://mirror-ubc.debian.org/debian/ jessie/main dbus amd64 1.8.22-0+deb8u1 [292 kB] Get:168 http://mirror-ubc.debian.org/debian/ jessie/main libpam-systemd amd64 215-17+deb8u7 [126 kB] Get:169 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-0-2 amd64 0.1.6-3 [50.4 kB] Get:170 http://mirror-ubc.debian.org/debian/ jessie/main multiarch-support amd64 2.19-18+deb8u10 [181 kB] Get:171 http://mirror-ubc.debian.org/debian/ jessie/main isc-dhcp-common amd64 4.3.1-6+deb8u3 [211 kB] Get:172 http://mirror-ubc.debian.org/debian/ jessie/main isc-dhcp-client amd64 4.3.1-6+deb8u3 [250 kB] Get:173 http://mirror-ubc.debian.org/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1 [67.6 kB] Get:174 http://mirror-ubc.debian.org/debian/ jessie/main debconf-i18n all 1.5.56+deb8u1 [206 kB] Get:175 http://mirror-ubc.debian.org/debian/ jessie/main libclass-isa-perl all 0.36-5 [10.1 kB] Get:176 http://mirror-ubc.debian.org/debian/ jessie/main libswitch-perl all 2.17-2 [20.5 kB] Get:177 http://mirror-ubc.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] Get:178 http://mirror-ubc.debian.org/debian/ jessie/main xz-utils amd64 5.1.1alpha+20120614-2+b3 [221 kB] Get:179 http://mirror-ubc.debian.org/debian/ jessie/main amap-align amd64 2.2-4 [132 kB] Get:180 http://mirror-ubc.debian.org/debian/ jessie/main blast2 amd64 1:2.2.26.20120620-8 [559 kB] Get:181 http://mirror-ubc.debian.org/debian/ jessie/main libargtable2-0 amd64 12-1.1 [17.2 kB] Get:182 http://mirror-ubc.debian.org/debian/ jessie/main clustalo amd64 1.2.1-1 [251 kB] Get:183 http://mirror-ubc.debian.org/debian/ jessie/main clustalw amd64 2.1+lgpl-4 [276 kB] Get:184 http://mirror-ubc.debian.org/debian/ jessie/main dialign-tx-data all 1.0.2-7 [880 kB] Get:185 http://mirror-ubc.debian.org/debian/ jessie/main dialign-tx amd64 1.0.2-7 [83.0 kB] Get:186 http://mirror-ubc.debian.org/debian/ jessie/main hmmer amd64 3.1b1-3 [1026 kB] Get:187 http://mirror-ubc.debian.org/debian/ jessie/main javascript-common all 11 [6120 B] Get:188 http://mirror-ubc.debian.org/debian/ jessie/main kalign amd64 1:2.03+20110620-2 [94.8 kB] Get:189 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-c3-perl all 0.09-1 [11.9 kB] Get:190 http://mirror-ubc.debian.org/debian/ jessie/main libarchive-extract-perl all 0.72-1 [24.8 kB] Get:191 http://mirror-ubc.debian.org/debian/ jessie/main libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:192 http://mirror-ubc.debian.org/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213 kB] Get:193 http://mirror-ubc.debian.org/debian/ jessie/main libcgi-fast-perl all 1:2.04-1 [10.9 kB] Get:194 http://mirror-ubc.debian.org/debian/ jessie/main libclass-c3-perl all 0.26-1 [22.9 kB] Get:195 http://mirror-ubc.debian.org/debian/ jessie/main libclass-c3-xs-perl amd64 0.13-2+b1 [15.2 kB] Get:196 http://mirror-ubc.debian.org/debian/ jessie/main libcpan-meta-perl all 2.142690-1 [125 kB] Get:197 http://mirror-ubc.debian.org/debian/ jessie/main libparams-util-perl amd64 1.07-2+b1 [23.5 kB] Get:198 http://mirror-ubc.debian.org/debian/ jessie/main libsub-install-perl all 0.928-1 [11.4 kB] Get:199 http://mirror-ubc.debian.org/debian/ jessie/main libdata-optlist-perl all 0.109-1 [10.6 kB] Get:200 http://mirror-ubc.debian.org/debian/ jessie/main libmro-compat-perl all 0.12-1 [13.2 kB] Get:201 http://mirror-ubc.debian.org/debian/ jessie/main libsub-exporter-perl all 0.986-1 [49.9 kB] Get:202 http://mirror-ubc.debian.org/debian/ jessie/main libdata-section-perl all 0.200006-1 [13.4 kB] Get:203 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-format-perl all 2.11-1 [43.1 kB] Get:204 http://mirror-ubc.debian.org/debian/ jessie/main libjs-jquery all 1.7.2+dfsg-3.2 [97.5 kB] Get:205 http://mirror-ubc.debian.org/debian/ jessie/main liblog-message-perl all 0.8-1 [26.0 kB] Get:206 http://mirror-ubc.debian.org/debian/ jessie/main liblog-message-simple-perl all 0.10-2 [8126 B] Get:207 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-build-perl all 0.421000-2+deb8u1 [265 kB] Get:208 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-pluggable-perl all 5.1-1 [25.0 kB] Get:209 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-signature-perl all 0.73-1+deb8u2 [30.4 kB] Get:210 http://mirror-ubc.debian.org/debian/ jessie/main libpackage-constants-perl all 0.04-1 [5820 B] Get:211 http://mirror-ubc.debian.org/debian/ jessie/main libpam-cap amd64 1:2.24-8 [12.5 kB] Get:212 http://mirror-ubc.debian.org/debian/ jessie/main libpod-latex-perl all 0.61-1 [34.7 kB] Get:213 http://mirror-ubc.debian.org/debian/ jessie/main libregexp-common-perl all 2013031301-1 [173 kB] Get:214 http://mirror-ubc.debian.org/debian/ jessie/main libpod-readme-perl all 0.11-1 [15.3 kB] Get:215 http://mirror-ubc.debian.org/debian/ jessie/main libtext-template-perl all 1.46-1 [53.1 kB] Get:216 http://mirror-ubc.debian.org/debian/ jessie/main libsoftware-license-perl all 0.103010-3 [119 kB] Get:217 http://mirror-ubc.debian.org/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1 kB] Get:218 http://mirror-ubc.debian.org/debian/ jessie/main libtext-soundex-perl amd64 3.4-1+b2 [13.7 kB] Get:219 http://mirror-ubc.debian.org/debian/ jessie/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:220 http://mirror-ubc.debian.org/debian/ jessie/main libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:221 http://mirror-ubc.debian.org/debian/ jessie/main mafft amd64 7.205-1 [775 kB] Get:222 http://mirror-ubc.debian.org/debian/ jessie/main mustang amd64 3.2.2-1 [112 kB] Get:223 http://mirror-ubc.debian.org/debian/ jessie/main ncbi-blast+ amd64 2.2.29-3 [7965 kB] Get:224 http://mirror-ubc.debian.org/debian/ jessie/main poa amd64 2.0+20060928-3 [50.8 kB] Get:225 http://mirror-ubc.debian.org/debian/ jessie/main prank amd64 0.0.140110-1 [327 kB] Get:226 http://mirror-ubc.debian.org/debian/ jessie/main proda amd64 1.0-8 [58.3 kB] Get:227 http://mirror-ubc.debian.org/debian/ jessie/main psmisc amd64 22.21-2 [119 kB] Get:228 http://mirror-ubc.debian.org/debian/ jessie/main rename all 0.20-3 [12.4 kB] Get:229 http://mirror-ubc.debian.org/debian/ jessie/main rubygems-integration all 1.8 [4514 B] Get:230 http://mirror-ubc.debian.org/debian/ jessie/main libruby2.1 amd64 2.1.5-2+deb8u3 [3290 kB] Get:231 http://mirror-ubc.debian.org/debian/ jessie/main ruby2.1 amd64 2.1.5-2+deb8u3 [276 kB] Get:232 http://mirror-ubc.debian.org/debian/ jessie/main ruby all 1:2.1.5+deb8u2 [9688 B] Get:233 http://mirror-ubc.debian.org/debian/ jessie/main ruby-bio all 1.4.3.0001-2 [721 kB] Get:234 http://mirror-ubc.debian.org/debian/ jessie/main sim4 amd64 0.0.20121010-1 [49.8 kB] Get:235 http://mirror-ubc.debian.org/debian/ jessie/main t-coffee amd64 11.00.8cbe486-1 [921 kB] Get:236 http://mirror-ubc.debian.org/debian/ jessie/main tm-align amd64 20140601+dfsg-1 [49.7 kB] Get:237 http://mirror-ubc.debian.org/debian/ jessie/main lynx-cur amd64 2.8.9dev1-2+deb8u1 [1623 kB] Get:238 http://mirror-ubc.debian.org/debian/ jessie/main lynx all 2.8.9dev1-2+deb8u1 [232 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.3 MB in 3s (23.2 MB/s) (Reading database ... 11596 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.19-18+deb8u10_amd64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.19-18+deb8u10) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. (Reading database ... 11599 files and directories currently installed.) Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.19-18+deb8u10_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.19-18+deb8u10) ... Installing new version of config file /etc/bindresvport.blacklist ... Installing new version of config file /etc/gai.conf ... dpkg: gcc-4.7-base:amd64: dependency problems, but removing anyway as you requested: libstdc++6:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgfortran3:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgcc1:amd64 depends on gcc-4.7-base (= 4.7.2-5). libquadmath0:amd64 depends on gcc-4.7-base (= 4.7.2-5). (Reading database ... 11589 files and directories currently installed.) Removing gcc-4.7-base:amd64 ... Selecting previously unselected package gcc-4.9-base:amd64. (Reading database ... 11580 files and directories currently installed.) Unpacking gcc-4.9-base:amd64 (from .../gcc-4.9-base_4.9.2-10+deb8u1_amd64.deb) ... Setting up gcc-4.9-base:amd64 (4.9.2-10+deb8u1) ... (Reading database ... 11589 files and directories currently installed.) Preparing to replace libstdc++6:amd64 4.7.2-5 (using .../libstdc++6_4.9.2-10+deb8u1_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.9.2-10+deb8u1) ... Processing triggers for libc-bin ... (Reading database ... 11602 files and directories currently installed.) Preparing to replace libgfortran3:amd64 4.7.2-5 (using .../libgfortran3_4.9.2-10+deb8u1_amd64.deb) ... Unpacking replacement libgfortran3:amd64 ... Preparing to replace libgcc1:amd64 1:4.7.2-5 (using .../libgcc1_1%3a4.9.2-10+deb8u1_amd64.deb) ... Unpacking replacement libgcc1:amd64 ... Setting up libgcc1:amd64 (1:4.9.2-10+deb8u1) ... Processing triggers for libc-bin ... (Reading database ... 11602 files and directories currently installed.) Preparing to replace libquadmath0:amd64 4.7.2-5 (using .../libquadmath0_4.9.2-10+deb8u1_amd64.deb) ... Unpacking replacement libquadmath0:amd64 ... Preparing to replace base-files 7.1wheezy11 (using .../base-files_8+deb8u11_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (8+deb8u11) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Updating /etc/profile to current default. Updating /etc/nsswitch.conf to current default. (Reading database ... 11603 files and directories currently installed.) Preparing to replace sensible-utils 0.0.7 (using .../sensible-utils_0.0.9+deb8u1_all.deb) ... Unpacking replacement sensible-utils ... Processing triggers for mime-support ... Setting up sensible-utils (0.0.9+deb8u1) ... (Reading database ... 11605 files and directories currently installed.) Preparing to replace debianutils 4.3.2 (using .../debianutils_4.4+b1_amd64.deb) ... Unpacking replacement debianutils ... Setting up debianutils (4.4+b1) ... (Reading database ... 11626 files and directories currently installed.) Preparing to replace bash 4.2+dfsg-0.1+deb7u3 (using .../bash_4.3-11+deb8u1_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.3-11+deb8u1) ... Installing new version of config file /etc/bash.bashrc ... Installing new version of config file /etc/skel/.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 11634 files and directories currently installed.) Preparing to replace libgpg-error0:amd64 1.10-3.1 (using .../libgpg-error0_1.17-3_amd64.deb) ... Unpacking replacement libgpg-error0:amd64 ... Setting up libgpg-error0:amd64 (1.17-3) ... Processing triggers for libc-bin ... Selecting previously unselected package libgcrypt20:amd64. (Reading database ... 11639 files and directories currently installed.) Unpacking libgcrypt20:amd64 (from .../libgcrypt20_1.6.3-2+deb8u4_amd64.deb) ... Setting up libgcrypt20:amd64 (1.6.3-2+deb8u4) ... Processing triggers for libc-bin ... Selecting previously unselected package libsystemd0:amd64. (Reading database ... 11649 files and directories currently installed.) Unpacking libsystemd0:amd64 (from .../libsystemd0_215-17+deb8u7_amd64.deb) ... Setting up libsystemd0:amd64 (215-17+deb8u7) ... Processing triggers for libc-bin ... (Reading database ... 11654 files and directories currently installed.) Preparing to replace bsdutils 1:2.20.1-5.3 (using .../bsdutils_1%3a2.25.2-6_amd64.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.25.2-6) ... Selecting previously unselected package libpcre3:amd64. (Reading database ... 11660 files and directories currently installed.) Unpacking libpcre3:amd64 (from .../libpcre3_2%3a8.35-3.3+deb8u4_amd64.deb) ... Setting up libpcre3:amd64 (2:8.35-3.3+deb8u4) ... Processing triggers for libc-bin ... (Reading database ... 11673 files and directories currently installed.) Preparing to replace libselinux1:amd64 2.1.9-5 (using .../libselinux1_2.3-2_amd64.deb) ... Unpacking replacement libselinux1:amd64 ... Setting up libselinux1:amd64 (2.3-2) ... Processing triggers for libc-bin ... (Reading database ... 11671 files and directories currently installed.) Preparing to replace coreutils 8.13-3.5 (using .../coreutils_8.23-4_amd64.deb) ... Unpacking replacement coreutils ... Setting up coreutils (8.23-4) ... (Reading database ... 11679 files and directories currently installed.) Preparing to replace dpkg 1.16.18 (using .../dpkg_1.17.27_amd64.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.17.27) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... 11670 files and directories currently installed.) Preparing to unpack .../dash_0.5.7-4+b1_amd64.deb ... Unpacking dash (0.5.7-4+b1) over (0.5.7-3) ... Setting up dash (0.5.7-4+b1) ... (Reading database ... 11670 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.3-1+b1_amd64.deb ... Unpacking diffutils (1:3.3-1+b1) over (1:3.2-6) ... Setting up diffutils (1:3.3-1+b1) ... (Reading database ... 11672 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.12-2+b1_amd64.deb ... Unpacking e2fslibs:amd64 (1.42.12-2+b1) over (1.42.5-1.1+deb7u1) ... Setting up e2fslibs:amd64 (1.42.12-2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11673 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.42.12-2+b1_amd64.deb ... Unpacking e2fsprogs (1.42.12-2+b1) over (1.42.5-1.1+deb7u1) ... Setting up e2fsprogs (1.42.12-2+b1) ... (Reading database ... 11679 files and directories currently installed.) Preparing to unpack .../findutils_4.4.2-9+b1_amd64.deb ... Unpacking findutils (4.4.2-9+b1) over (4.4.2-4) ... Setting up findutils (4.4.2-9+b1) ... (Reading database ... 11680 files and directories currently installed.) Preparing to unpack .../grep_2.20-4.1_amd64.deb ... Unpacking grep (2.20-4.1) over (2.12-2) ... Setting up grep (2.20-4.1) ... (Reading database ... 11681 files and directories currently installed.) Preparing to unpack .../archives/gzip_1.6-4_amd64.deb ... Unpacking gzip (1.6-4) over (1.5-1.1) ... Setting up gzip (1.6-4) ... (Reading database ... 11680 files and directories currently installed.) Preparing to unpack .../hostname_3.15_amd64.deb ... Unpacking hostname (3.15) over (3.11) ... Setting up hostname (3.15) ... Selecting previously unselected package libaudit-common. (Reading database ... 11680 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.4-1_all.deb ... Unpacking libaudit-common (1:2.4-1) ... Setting up libaudit-common (1:2.4-1) ... Selecting previously unselected package libaudit1:amd64. (Reading database ... 11686 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.4-1+b1_amd64.deb ... Unpacking libaudit1:amd64 (1:2.4-1+b1) ... Setting up libaudit1:amd64 (1:2.4-1+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11693 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.4.47-2_amd64.deb ... Unpacking libattr1:amd64 (1:2.4.47-2) over (1:2.4.46-8) ... Setting up libattr1:amd64 (1:2.4.47-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package libcap2:amd64. (Reading database ... 11693 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.24-8_amd64.deb ... Unpacking libcap2:amd64 (1:2.24-8) ... Setting up libcap2:amd64 (1:2.24-8) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package libudev1:amd64. (Reading database ... 11699 files and directories currently installed.) Preparing to unpack .../libudev1_215-17+deb8u7_amd64.deb ... Unpacking libudev1:amd64 (215-17+deb8u7) ... Setting up libudev1:amd64 (215-17+deb8u7) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package libdb5.3:amd64. (Reading database ... 11705 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-9+deb8u1_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28-9+deb8u1) ... Setting up libdb5.3:amd64 (5.3.28-9+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11711 files and directories currently installed.) Preparing to unpack .../iproute_1%3a3.16.0-2_all.deb ... Unpacking iproute (1:3.16.0-2) over (20120521-3+b3) ... dpkg: warning: unable to delete old directory '/etc/iproute2': Directory not empty Selecting previously unselected package iproute2. Preparing to unpack .../iproute2_3.16.0-2_amd64.deb ... Unpacking iproute2 (3.16.0-2) ... Selecting previously unselected package adduser. Preparing to unpack .../adduser_3.113+nmu3_all.deb ... Unpacking adduser (3.113+nmu3) ... Setting up adduser (3.113+nmu3) ... (Reading database ... 11837 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59_amd64.deb ... Unpacking sysvinit-utils (2.88dsf-59) over (2.88dsf-41+deb7u1) ... Selecting previously unselected package startpar. Preparing to unpack .../startpar_0.59-3_amd64.deb ... Unpacking startpar (0.59-3) ... Setting up startpar (0.59-3) ... Installing new version of config file /etc/init/startpar-bridge.conf ... Setting up sysvinit-utils (2.88dsf-59) ... (Reading database ... 11844 files and directories currently installed.) Preparing to unpack .../sysv-rc_2.88dsf-59_all.deb ... Unpacking sysv-rc (2.88dsf-59) over (2.88dsf-41+deb7u1) ... Setting up sysv-rc (2.88dsf-59) ... (Reading database ... 11844 files and directories currently installed.) Preparing to unpack .../libmount1_2.25.2-6_amd64.deb ... Unpacking libmount1:amd64 (2.25.2-6) over (2.20.1-5.3) ... Setting up libmount1:amd64 (2.25.2-6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package libsmartcols1:amd64. (Reading database ... 11844 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.25.2-6_amd64.deb ... Unpacking libsmartcols1:amd64 (2.25.2-6) ... Setting up libsmartcols1:amd64 (2.25.2-6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11850 files and directories currently installed.) Preparing to unpack .../mount_2.25.2-6_amd64.deb ... Unpacking mount (2.25.2-6) over (2.20.1-5.3) ... Setting up mount (2.25.2-6) ... (Reading database ... 11855 files and directories currently installed.) Preparing to unpack .../lsb-base_4.1+Debian13+nmu1_all.deb ... Unpacking lsb-base (4.1+Debian13+nmu1) over (4.1+Debian8+deb7u1) ... Setting up lsb-base (4.1+Debian13+nmu1) ... (Reading database ... 11855 files and directories currently installed.) Preparing to unpack .../archives/netbase_5.3_all.deb ... Unpacking netbase (5.3) over (5.0) ... Preparing to unpack .../ifupdown_0.7.53.1_amd64.deb ... Unpacking ifupdown (0.7.53.1) over (0.7.8) ... Preparing to unpack .../initscripts_2.88dsf-59_amd64.deb ... Removing unmodified and obsolete conffile /etc/init.d/mtab.sh ... Unpacking initscripts (2.88dsf-59) over (2.88dsf-41+deb7u1) ... Setting up initscripts (2.88dsf-59) ... Installing new version of config file /etc/init.d/bootmisc.sh ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/checkroot-bootclean.sh ... Installing new version of config file /etc/init.d/halt ... Installing new version of config file /etc/init.d/killprocs ... Installing new version of config file /etc/init.d/mountall.sh ... Installing new version of config file /etc/init.d/mountall-bootclean.sh ... Installing new version of config file /etc/init.d/mountnfs.sh ... Installing new version of config file /etc/init.d/mountnfs-bootclean.sh ... Installing new version of config file /etc/init.d/mountdevsubfs.sh ... Installing new version of config file /etc/init.d/mountkernfs.sh ... Installing new version of config file /etc/init.d/rc.local ... Installing new version of config file /etc/init.d/reboot ... Installing new version of config file /etc/init.d/rmnologin ... Installing new version of config file /etc/init.d/sendsigs ... Installing new version of config file /etc/init.d/single ... Installing new version of config file /etc/init.d/umountfs ... Installing new version of config file /etc/init.d/umountnfs.sh ... Installing new version of config file /etc/init.d/umountroot ... Installing new version of config file /etc/network/if-up.d/mountnfs ... (Reading database ... 11857 files and directories currently installed.) Preparing to unpack .../perl_5.20.2-3+deb8u11_amd64.deb ... Unpacking perl (5.20.2-3+deb8u11) over (5.14.2-21+deb7u3) ... Preparing to unpack .../libio-socket-ip-perl_0.32-1_all.deb ... Unpacking libio-socket-ip-perl (0.32-1) over (0.16-2) ... Preparing to unpack .../libsocket-perl_2.016-1_amd64.deb ... Unpacking libsocket-perl (2.016-1) over (2.002-1) ... Preparing to unpack .../libtext-charwidth-perl_0.04-7+b3_amd64.deb ... Unpacking libtext-charwidth-perl (0.04-7+b3) over (0.04-7+b1) ... Preparing to unpack .../libhtml-parser-perl_3.71-1+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.71-1+b3) over (3.69-2) ... Preparing to unpack .../perl-base_5.20.2-3+deb8u11_amd64.deb ... Unpacking perl-base (5.20.2-3+deb8u11) over (5.14.2-21+deb7u3) ... Setting up perl-base (5.20.2-3+deb8u11) ... (Reading database ... 11207 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.05-8+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.05-8+b1) over (1.05-7+b1) ... Preparing to unpack .../libnet-ssleay-perl_1.65-1+deb8u1_amd64.deb ... Unpacking libnet-ssleay-perl (1.65-1+deb8u1) over (1.48-1+b1) ... Preparing to unpack .../libtext-iconv-perl_1.7-5+b2_amd64.deb ... Unpacking libtext-iconv-perl (1.7-5+b2) over (1.7-5) ... Preparing to unpack .../libcrypt-ssleay-perl_0.58-1+b2_amd64.deb ... Unpacking libcrypt-ssleay-perl (0.58-1+b2) over (0.58-1) ... Preparing to unpack .../libossp-uuid-perl_1.6.2-1.5+b1_amd64.deb ... Unpacking libossp-uuid-perl (1.6.2-1.5+b1) over (1.6.2-1.3) ... Preparing to unpack .../libfcgi-perl_0.77-1+deb8u1_amd64.deb ... Unpacking libfcgi-perl (0.77-1+deb8u1) over (0.74-1+b1) ... Preparing to unpack .../libxml-parser-perl_2.41-3_amd64.deb ... Unpacking libxml-parser-perl (2.41-3) over (2.41-1+b1) ... Preparing to unpack .../perl-modules_5.20.2-3+deb8u11_all.deb ... Unpacking perl-modules (5.20.2-3+deb8u11) over (5.14.2-21+deb7u3) ... Preparing to unpack .../libbz2-1.0_1.0.6-7+b3_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-7+b3) over (1.0.6-4) ... Setting up libbz2-1.0:amd64 (1.0.6-7+b3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11157 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-13.1) over (1.8.3-11) ... Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2+b1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-2+b1) over (1:1.2.7.dfsg-13) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11156 files and directories currently installed.) Preparing to unpack .../liburi-perl_1.64-1_all.deb ... Unpacking liburi-perl (1.64-1) over (1.60-1) ... Preparing to unpack .../libssl1.0.0_1.0.1t-1+deb8u8_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1t-1+deb8u8) over (1.0.1e-2+deb7u20) ... Preparing to unpack .../libossp-uuid16_1.6.2-1.5+b1_amd64.deb ... Unpacking libossp-uuid16:amd64 (1.6.2-1.5+b1) over (1.6.2-1.3) ... Preparing to unpack .../libexpat1_2.1.0-6+deb8u4_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6+deb8u4) over (2.1.0-1+deb7u2) ... Preparing to unpack .../libnet-http-perl_6.07-1_all.deb ... Unpacking libnet-http-perl (6.07-1) over (6.03-2) ... Preparing to unpack .../liblwp-protocol-https-perl_6.06-2_all.deb ... Unpacking liblwp-protocol-https-perl (6.06-2) over (6.03-1) ... Preparing to unpack .../libhttp-message-perl_6.06-1_all.deb ... Unpacking libhttp-message-perl (6.06-1) over (6.03-1) ... Preparing to unpack .../libhttp-cookies-perl_6.01-1_all.deb ... Unpacking libhttp-cookies-perl (6.01-1) over (6.00-2) ... Preparing to unpack .../libwww-perl_6.08-1_all.deb ... Unpacking libwww-perl (6.08-1) over (6.04-1) ... Preparing to unpack .../libsoap-lite-perl_1.11-1_all.deb ... Unpacking libsoap-lite-perl (1.11-1) over (0.714-1) ... Selecting previously unselected package libio-sessiondata-perl. Preparing to unpack .../libio-sessiondata-perl_1.03-1_all.deb ... Unpacking libio-sessiondata-perl (1.03-1) ... Preparing to unpack .../libclass-inspector-perl_1.28-1_all.deb ... Unpacking libclass-inspector-perl (1.28-1) over (1.27-1) ... Preparing to unpack .../libio-socket-ssl-perl_2.002-2+deb8u3_all.deb ... Unpacking libio-socket-ssl-perl (2.002-2+deb8u3) over (1.76-2) ... Preparing to unpack .../libconvert-binhex-perl_1.123-2_all.deb ... Unpacking libconvert-binhex-perl (1.123-2) over (1.119+pristine-3) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../libnet-smtp-ssl-perl_1.01-3_all.deb ... Unpacking libnet-smtp-ssl-perl (1.01-3) ... Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) over (1.2000-1) ... Preparing to unpack .../libmailtools-perl_2.13-1_all.deb ... Unpacking libmailtools-perl (2.13-1) over (2.09-1) ... Preparing to unpack .../libmime-tools-perl_5.505-1_all.deb ... Unpacking libmime-tools-perl (5.505-1) over (5.503-1) ... Preparing to unpack .../libtask-weaken-perl_1.04-1_all.deb ... Unpacking libtask-weaken-perl (1.04-1) over (1.03-1) ... Preparing to unpack .../openssl_1.0.1t-1+deb8u8_amd64.deb ... Unpacking openssl (1.0.1t-1+deb8u8) over (1.0.1e-2+deb7u20) ... Preparing to unpack .../ca-certificates_20141019+deb8u3_all.deb ... Unpacking ca-certificates (20141019+deb8u3) over (20130119+deb7u1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../libio-html-perl_1.001-1_all.deb ... Unpacking libio-html-perl (1.001-1) ... Preparing to unpack .../libhtml-tree-perl_5.03-1_all.deb ... Unpacking libhtml-tree-perl (5.03-1) over (5.02-1) ... Preparing to unpack .../debconf_1.5.56+deb8u1_all.deb ... Unpacking debconf (1.5.56+deb8u1) over (1.5.49) ... Setting up debconf (1.5.56+deb8u1) ... (Reading database ... 11183 files and directories currently installed.) Preparing to unpack .../libpam0g_1.1.8-3.1+deb8u2+b1_amd64.deb ... Unpacking libpam0g:amd64 (1.1.8-3.1+deb8u2+b1) over (1.1.3-7.1) ... Setting up libpam0g:amd64 (1.1.8-3.1+deb8u2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11184 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.3-1_all.deb ... Unpacking libsemanage-common (2.3-1) over (2.1.6-6) ... Setting up libsemanage-common (2.3-1) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... 11184 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.3-1+b1_amd64.deb ... Unpacking libsemanage1:amd64 (2.3-1+b1) over (2.1.6-6) ... Setting up libsemanage1:amd64 (2.3-1+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11185 files and directories currently installed.) Preparing to unpack .../libsepol1_2.3-2_amd64.deb ... Unpacking libsepol1:amd64 (2.3-2) over (2.1.4-3) ... Setting up libsepol1:amd64 (2.3-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11185 files and directories currently installed.) Preparing to unpack .../libustr-1.0-1_1.0.4-3+b2_amd64.deb ... Unpacking libustr-1.0-1:amd64 (1.0.4-3+b2) over (1.0.4-3) ... Setting up libustr-1.0-1:amd64 (1.0.4-3+b2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11186 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.1.8-3.1+deb8u2+b1_amd64.deb ... Unpacking libpam-modules-bin (1.1.8-3.1+deb8u2+b1) over (1.1.3-7.1) ... Replacing files in old package libpam-modules:amd64 (1.1.3-7.1) ... Setting up libpam-modules-bin (1.1.8-3.1+deb8u2+b1) ... (Reading database ... 11188 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.1.8-3.1+deb8u2+b1_amd64.deb ... Unpacking libpam-modules:amd64 (1.1.8-3.1+deb8u2+b1) over (1.1.3-7.1) ... Setting up libpam-modules:amd64 (1.1.8-3.1+deb8u2+b1) ... Installing new version of config file /etc/security/limits.conf ... Installing new version of config file /etc/security/namespace.conf ... Installing new version of config file /etc/security/namespace.init ... Installing new version of config file /etc/security/pam_env.conf ... Installing new version of config file /etc/security/time.conf ... (Reading database ... 11192 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.2-3+deb8u4_amd64.deb ... Unpacking passwd (1:4.2-3+deb8u4) over (1:4.1.5.1-1) ... Setting up passwd (1:4.2-3+deb8u4) ... (Reading database ... 11195 files and directories currently installed.) Preparing to unpack .../libuuid1_2.25.2-6_amd64.deb ... Unpacking libuuid1:amd64 (2.25.2-6) over (2.20.1-5.3) ... Setting up libuuid1:amd64 (2.25.2-6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11194 files and directories currently installed.) Preparing to unpack .../libblkid1_2.25.2-6_amd64.deb ... Unpacking libblkid1:amd64 (2.25.2-6) over (2.20.1-5.3) ... Setting up libblkid1:amd64 (2.25.2-6) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11194 files and directories currently installed.) Preparing to unpack .../tzdata_2018e-0+deb8u1_all.deb ... Unpacking tzdata (2018e-0+deb8u1) over (2016d-0+deb7u1) ... Setting up tzdata (2018e-0+deb8u1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jul 2 19:51:46 UTC 2019. Universal Time is now: Tue Jul 2 19:51:46 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 11207 files and directories currently installed.) Preparing to unpack .../util-linux_2.25.2-6_amd64.deb ... Unpacking util-linux (2.25.2-6) over (2.20.1-5.3) ... Processing triggers for mime-support (3.52-1+deb7u1) ... Setting up util-linux (2.25.2-6) ... Installing new version of config file /etc/init.d/hwclock.sh ... Selecting previously unselected package libdevmapper1.02.1:amd64. (Reading database ... 11321 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.90-2.2+deb8u1_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.90-2.2+deb8u1) ... Selecting previously unselected package dmsetup. Preparing to unpack .../dmsetup_2%3a1.02.90-2.2+deb8u1_amd64.deb ... Unpacking dmsetup (2:1.02.90-2.2+deb8u1) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.90-2.2+deb8u1) ... Setting up dmsetup (2:1.02.90-2.2+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package libcryptsetup4:amd64. (Reading database ... 11339 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.6.6-5_amd64.deb ... Unpacking libcryptsetup4:amd64 (2:1.6.6-5) ... Setting up libcryptsetup4:amd64 (2:1.6.6-5) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package libkmod2:amd64. (Reading database ... 11346 files and directories currently installed.) Preparing to unpack .../libkmod2_18-3_amd64.deb ... Unpacking libkmod2:amd64 (18-3) ... Setting up libkmod2:amd64 (18-3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package libprocps3:amd64. (Reading database ... 11352 files and directories currently installed.) Preparing to unpack .../libprocps3_2%3a3.3.9-9+deb8u1_amd64.deb ... Unpacking libprocps3:amd64 (2:3.3.9-9+deb8u1) ... Setting up libprocps3:amd64 (2:3.3.9-9+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11359 files and directories currently installed.) Preparing to unpack .../libtinfo5_5.9+20140913-1+deb8u3_amd64.deb ... Unpacking libtinfo5:amd64 (5.9+20140913-1+deb8u3) over (5.9-10) ... Setting up libtinfo5:amd64 (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11359 files and directories currently installed.) Preparing to unpack .../libncurses5_5.9+20140913-1+deb8u3_amd64.deb ... Unpacking libncurses5:amd64 (5.9+20140913-1+deb8u3) over (5.9-10) ... Setting up libncurses5:amd64 (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 11359 files and directories currently installed.) Preparing to unpack .../libncursesw5_5.9+20140913-1+deb8u3_amd64.deb ... Unpacking libncursesw5:amd64 (5.9+20140913-1+deb8u3) over (5.9-10) ... Setting up libncursesw5:amd64 (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package procps. (Reading database ... 11359 files and directories currently installed.) Preparing to unpack .../procps_2%3a3.3.9-9+deb8u1_amd64.deb ... Unpacking procps (2:3.3.9-9+deb8u1) ... Setting up procps (2:3.3.9-9+deb8u1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode invoke-rc.d: policy-rc.d denied execution of start. (Reading database ... 11415 files and directories currently installed.) Preparing to unpack .../libacl1_2.2.52-2_amd64.deb ... Unpacking libacl1:amd64 (2.2.52-2) over (2.2.51-8) ... Setting up libacl1:amd64 (2.2.52-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package udev. (Reading database ... 11415 files and directories currently installed.) Preparing to unpack .../udev_215-17+deb8u7_amd64.deb ... Unpacking udev (215-17+deb8u7) ... Setting up udev (215-17+deb8u7) ... Adding group `input' (GID 150) ... Done. A chroot environment has been detected, udev not started. Selecting previously unselected package acl. (Reading database ... 11516 files and directories currently installed.) Preparing to unpack .../acl_2.2.52-2_amd64.deb ... Unpacking acl (2.2.52-2) ... Setting up acl (2.2.52-2) ... Selecting previously unselected package libcap2-bin. (Reading database ... 11539 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.24-8_amd64.deb ... Unpacking libcap2-bin (1:2.24-8) ... Setting up libcap2-bin (1:2.24-8) ... Selecting previously unselected package systemd. (Reading database ... 11554 files and directories currently installed.) Preparing to unpack .../systemd_215-17+deb8u7_amd64.deb ... Unpacking systemd (215-17+deb8u7) ... Setting up systemd (215-17+deb8u7) ... Initializing machine ID from random generator. Adding group `systemd-journal' (GID 151) ... Done. Created symlink from /etc/systemd/system/getty.target.wants/getty@tty1.service to /lib/systemd/system/getty@.service. Created symlink from /etc/systemd/system/multi-user.target.wants/remote-fs.target to /lib/systemd/system/remote-fs.target. Created symlink from /etc/systemd/system/reboot.target.wants/hwclock-save.service to /lib/systemd/system/hwclock-save.service. Created symlink from /etc/systemd/system/halt.target.wants/hwclock-save.service to /lib/systemd/system/hwclock-save.service. Created symlink from /etc/systemd/system/poweroff.target.wants/hwclock-save.service to /lib/systemd/system/hwclock-save.service. Selecting previously unselected package systemd-sysv. (Reading database ... 12182 files and directories currently installed.) Preparing to unpack .../systemd-sysv_215-17+deb8u7_amd64.deb ... Unpacking systemd-sysv (215-17+deb8u7) ... Replacing files in old package sysvinit (2.88dsf-41+deb7u1) ... Setting up systemd-sysv (215-17+deb8u7) ... Selecting previously unselected package init. (Reading database ... 12186 files and directories currently installed.) Preparing to unpack .../archives/init_1.22_amd64.deb ... Unpacking init (1.22) ... Setting up init (1.22) ... (Reading database ... 12189 files and directories currently installed.) Preparing to unpack .../login_1%3a4.2-3+deb8u4_amd64.deb ... Unpacking login (1:4.2-3+deb8u4) over (1:4.1.5.1-1) ... Setting up login (1:4.2-3+deb8u4) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... Installing new version of config file /etc/pam.d/su ... Installing new version of config file /etc/securetty ... (Reading database ... 12189 files and directories currently installed.) Preparing to unpack .../ncurses-bin_5.9+20140913-1+deb8u3_amd64.deb ... Unpacking ncurses-bin (5.9+20140913-1+deb8u3) over (5.9-10) ... Setting up ncurses-bin (5.9+20140913-1+deb8u3) ... (Reading database ... 12187 files and directories currently installed.) Preparing to unpack .../sed_4.2.2-4+deb8u1_amd64.deb ... Unpacking sed (4.2.2-4+deb8u1) over (4.2.1-10) ... Setting up sed (4.2.2-4+deb8u1) ... (Reading database ... 12189 files and directories currently installed.) Preparing to unpack .../tar_1.27.1-2+deb8u1_amd64.deb ... Unpacking tar (1.27.1-2+deb8u1) over (1.26+dfsg-0.1) ... Processing triggers for mime-support (3.52-1+deb7u1) ... Setting up tar (1.27.1-2+deb8u1) ... (Reading database ... 12193 files and directories currently installed.) Preparing to unpack .../sysvinit_2.88dsf-59_amd64.deb ... Unpacking sysvinit (2.88dsf-59) over (2.88dsf-41+deb7u1) ... Setting up sysvinit (2.88dsf-59) ... (Reading database ... 12188 files and directories currently installed.) Preparing to unpack .../liblzma5_5.1.1alpha+20120614-2+b3_amd64.deb ... Unpacking liblzma5:amd64 (5.1.1alpha+20120614-2+b3) over (5.1.1alpha+20120614-2) ... Setting up liblzma5:amd64 (5.1.1alpha+20120614-2+b3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 12189 files and directories currently installed.) Preparing to unpack .../libapt-pkg4.12_1.0.9.8.4_amd64.deb ... Unpacking libapt-pkg4.12:amd64 (1.0.9.8.4) over (0.9.7.9+deb7u7) ... Setting up libapt-pkg4.12:amd64 (1.0.9.8.4) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 12190 files and directories currently installed.) Preparing to unpack .../gpgv_1.4.18-7+deb8u5_amd64.deb ... Unpacking gpgv (1.4.18-7+deb8u5) over (1.4.12-7+deb7u7) ... Setting up gpgv (1.4.18-7+deb8u5) ... (Reading database ... 12190 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2017.5~deb8u1_all.deb ... Unpacking debian-archive-keyring (2017.5~deb8u1) over (2014.3~deb7u1) ... Setting up debian-archive-keyring (2017.5~deb8u1) ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-squeeze-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-squeeze-stable.gpg ... (Reading database ... 12191 files and directories currently installed.) Preparing to unpack .../readline-common_6.3-8_all.deb ... Unpacking readline-common (6.3-8) over (6.2+dfsg-0.1) ... Setting up readline-common (6.3-8) ... (Reading database ... 12192 files and directories currently installed.) Preparing to unpack .../libreadline6_6.3-8+b3_amd64.deb ... Unpacking libreadline6:amd64 (6.3-8+b3) over (6.2+dfsg-0.1) ... Setting up libreadline6:amd64 (6.3-8+b3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 12193 files and directories currently installed.) Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-25_amd64.deb ... Unpacking libusb-0.1-4:amd64 (2:0.1.12-25) over (2:0.1.12-20+nmu1) ... Setting up libusb-0.1-4:amd64 (2:0.1.12-25) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 12194 files and directories currently installed.) Preparing to unpack .../gnupg_1.4.18-7+deb8u5_amd64.deb ... Unpacking gnupg (1.4.18-7+deb8u5) over (1.4.12-7+deb7u7) ... Setting up gnupg (1.4.18-7+deb8u5) ... (Reading database ... 12194 files and directories currently installed.) Preparing to unpack .../apt_1.0.9.8.4_amd64.deb ... Unpacking apt (1.0.9.8.4) over (0.9.7.9+deb7u7) ... Setting up apt (1.0.9.8.4) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package libdebconfclient0:amd64. (Reading database ... 12217 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.192_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.192) ... Setting up libdebconfclient0:amd64 (0.192) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 12222 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.37_amd64.deb ... Unpacking base-passwd (3.5.37) over (3.5.26) ... Setting up base-passwd (3.5.37) ... Changing shell of daemon from /bin/sh to /usr/sbin/nologin Changing shell of bin from /bin/sh to /usr/sbin/nologin Changing shell of sys from /bin/sh to /usr/sbin/nologin Changing shell of games from /bin/sh to /usr/sbin/nologin Changing shell of man from /bin/sh to /usr/sbin/nologin Changing shell of lp from /bin/sh to /usr/sbin/nologin Changing shell of mail from /bin/sh to /usr/sbin/nologin Changing shell of news from /bin/sh to /usr/sbin/nologin Changing shell of uucp from /bin/sh to /usr/sbin/nologin Changing shell of proxy from /bin/sh to /usr/sbin/nologin Changing shell of www-data from /bin/sh to /usr/sbin/nologin Changing shell of backup from /bin/sh to /usr/sbin/nologin Changing shell of list from /bin/sh to /usr/sbin/nologin Changing shell of irc from /bin/sh to /usr/sbin/nologin Changing shell of gnats from /bin/sh to /usr/sbin/nologin Changing shell of nobody from /bin/sh to /usr/sbin/nologin 16 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 12223 files and directories currently installed.) Preparing to unpack .../ncurses-base_5.9+20140913-1+deb8u3_all.deb ... Unpacking ncurses-base (5.9+20140913-1+deb8u3) over (5.9-10) ... Setting up ncurses-base (5.9+20140913-1+deb8u3) ... (Reading database ... 12223 files and directories currently installed.) Preparing to unpack .../libslang2_2.3.0-2_amd64.deb ... Unpacking libslang2:amd64 (2.3.0-2) over (2.2.4-15) ... Setting up libslang2:amd64 (2.3.0-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 12223 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.12-2+b1_amd64.deb ... Unpacking libcomerr2:amd64 (1.42.12-2+b1) over (1.42.5-1.1+deb7u1) ... Setting up libcomerr2:amd64 (1.42.12-2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 12224 files and directories currently installed.) Preparing to unpack .../libss2_1.42.12-2+b1_amd64.deb ... Unpacking libss2:amd64 (1.42.12-2+b1) over (1.42.5-1.1+deb7u1) ... Setting up libss2:amd64 (1.42.12-2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package libgmp10:amd64. (Reading database ... 12225 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_amd64.deb ... Unpacking libgmp10:amd64 (2:6.0.0+dfsg-6) ... Selecting previously unselected package libnettle4:amd64. Preparing to unpack .../libnettle4_2.7.1-5+deb8u2_amd64.deb ... Unpacking libnettle4:amd64 (2.7.1-5+deb8u2) ... Selecting previously unselected package libhogweed2:amd64. Preparing to unpack .../libhogweed2_2.7.1-5+deb8u2_amd64.deb ... Unpacking libhogweed2:amd64 (2.7.1-5+deb8u2) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2+deb8u1_amd64.deb ... Unpacking libffi6:amd64 (3.1-2+deb8u1) ... Preparing to unpack .../libp11-kit0_0.20.7-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.20.7-1) over (0.12-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.2-3+deb8u3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.2-3+deb8u3) ... Selecting previously unselected package libgnutls-deb0-28:amd64. Preparing to unpack .../libgnutls-deb0-28_3.3.8-6+deb8u7_amd64.deb ... Unpacking libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Preparing to unpack .../libgpm2_1.20.4-6.1+b2_amd64.deb ... Unpacking libgpm2:amd64 (1.20.4-6.1+b2) over (1.20.4-6) ... Preparing to unpack .../libidn11_1.29-1+deb8u2_amd64.deb ... Unpacking libidn11:amd64 (1.29-1+deb8u2) over (1.25-2) ... Preparing to unpack .../file_1%3a5.22+15-2+deb8u4_amd64.deb ... Unpacking file (1:5.22+15-2+deb8u4) over (5.11-2+deb7u8) ... Preparing to unpack .../libmagic1_1%3a5.22+15-2+deb8u4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.22+15-2+deb8u4) over (5.11-2+deb7u8) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../libsqlite3-0_3.8.7.1-1+deb8u2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../libpython2.7-minimal_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../python2.7-minimal_2.7.9-2+deb8u1_amd64.deb ... Unpacking python2.7-minimal (2.7.9-2+deb8u1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../python-minimal_2.7.9-1_amd64.deb ... Unpacking python-minimal (2.7.9-1) ... Preparing to unpack .../mime-support_3.58_all.deb ... Unpacking mime-support (3.58) over (3.52-1+deb7u1) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../libpython2.7-stdlib_2.7.9-2+deb8u1_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../python2.7_2.7.9-2+deb8u1_amd64.deb ... Unpacking python2.7 (2.7.9-2+deb8u1) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../libpython-stdlib_2.7.9-1_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.9-1) ... Setting up libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7-minimal (2.7.9-2+deb8u1) ... Setting up python-minimal (2.7.9-1) ... Selecting previously unselected package python. (Reading database ... 13040 files and directories currently installed.) Preparing to unpack .../python_2.7.9-1_amd64.deb ... Unpacking python (2.7.9-1) ... Preparing to unpack .../libbsd0_0.7.0-2_amd64.deb ... Unpacking libbsd0:amd64 (0.7.0-2) over (0.4.2-1) ... Selecting previously unselected package libcap-ng0:amd64. Preparing to unpack .../libcap-ng0_0.7.4-2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.4-2) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../libdbus-1-3_1.8.22-0+deb8u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Selecting previously unselected package libisc-export95. Preparing to unpack .../libisc-export95_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libdns-export100. Preparing to unpack .../libdns-export100_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../libgomp1_4.9.2-10+deb8u1_amd64.deb ... Unpacking libgomp1:amd64 (4.9.2-10+deb8u1) ... Selecting previously unselected package libisccfg-export90. Preparing to unpack .../libisccfg-export90_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Selecting previously unselected package libirs-export91. Preparing to unpack .../libirs-export91_1%3a9.9.5.dfsg-9+deb8u15_amd64.deb ... Unpacking libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Preparing to unpack .../libncbi6_6.1.20120620-8_amd64.deb ... Unpacking libncbi6:amd64 (6.1.20120620-8) over (6.1.20120620-2) ... Preparing to unpack .../ncbi-data_6.1.20120620-8_all.deb ... Unpacking ncbi-data (6.1.20120620-8) over (6.1.20120620-2) ... Preparing to unpack .../libpam-runtime_1.1.8-3.1+deb8u2_all.deb ... Unpacking libpam-runtime (1.1.8-3.1+deb8u2) over (1.1.3-7.1) ... Setting up libpam-runtime (1.1.8-3.1+deb8u2) ... Selecting previously unselected package dbus. (Reading database ... 13190 files and directories currently installed.) Preparing to unpack .../dbus_1.8.22-0+deb8u1_amd64.deb ... Unpacking dbus (1.8.22-0+deb8u1) ... Selecting previously unselected package libpam-systemd:amd64. Preparing to unpack .../libpam-systemd_215-17+deb8u7_amd64.deb ... Unpacking libpam-systemd:amd64 (215-17+deb8u7) ... Preparing to unpack .../libyaml-0-2_0.1.6-3_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.1.6-3) over (0.1.4-2+deb7u5) ... Preparing to unpack .../multiarch-support_2.19-18+deb8u10_amd64.deb ... Unpacking multiarch-support (2.19-18+deb8u10) over (2.13-38+deb7u10) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up multiarch-support (2.19-18+deb8u10) ... Selecting previously unselected package isc-dhcp-common. (Reading database ... 13234 files and directories currently installed.) Preparing to unpack .../isc-dhcp-common_4.3.1-6+deb8u3_amd64.deb ... Unpacking isc-dhcp-common (4.3.1-6+deb8u3) ... Selecting previously unselected package isc-dhcp-client. Preparing to unpack .../isc-dhcp-client_4.3.1-6+deb8u3_amd64.deb ... Unpacking isc-dhcp-client (4.3.1-6+deb8u3) ... Selecting previously unselected package libxtables10. Preparing to unpack .../libxtables10_1.4.21-2+b1_amd64.deb ... Unpacking libxtables10 (1.4.21-2+b1) ... Preparing to unpack .../debconf-i18n_1.5.56+deb8u1_all.deb ... Unpacking debconf-i18n (1.5.56+deb8u1) over (1.5.49) ... Preparing to unpack .../libclass-isa-perl_0.36-5_all.deb ... Unpacking libclass-isa-perl (0.36-5) over (0.36-3) ... Preparing to unpack .../libswitch-perl_2.17-2_all.deb ... Unpacking libswitch-perl (2.17-2) over (2.16-2) ... Preparing to unpack .../archives/ucf_3.0030_all.deb ... Unpacking ucf (3.0030) over (3.0025+nmu3) ... Preparing to unpack .../xz-utils_5.1.1alpha+20120614-2+b3_amd64.deb ... Unpacking xz-utils (5.1.1alpha+20120614-2+b3) over (5.1.1alpha+20120614-2) ... Selecting previously unselected package amap-align. Preparing to unpack .../amap-align_2.2-4_amd64.deb ... Unpacking amap-align (2.2-4) ... Preparing to unpack .../blast2_1%3a2.2.26.20120620-8_amd64.deb ... Unpacking blast2 (1:2.2.26.20120620-8) over (1:2.2.26.20120620-2) ... Selecting previously unselected package libargtable2-0. Preparing to unpack .../libargtable2-0_12-1.1_amd64.deb ... Unpacking libargtable2-0 (12-1.1) ... Selecting previously unselected package clustalo. Preparing to unpack .../clustalo_1.2.1-1_amd64.deb ... Unpacking clustalo (1.2.1-1) ... Selecting previously unselected package clustalw. Preparing to unpack .../clustalw_2.1+lgpl-4_amd64.deb ... Unpacking clustalw (2.1+lgpl-4) ... Selecting previously unselected package dialign-tx-data. Preparing to unpack .../dialign-tx-data_1.0.2-7_all.deb ... Unpacking dialign-tx-data (1.0.2-7) ... Selecting previously unselected package dialign-tx. Preparing to unpack .../dialign-tx_1.0.2-7_amd64.deb ... Unpacking dialign-tx (1.0.2-7) ... Preparing to unpack .../hmmer_3.1b1-3_amd64.deb ... Unpacking hmmer (3.1b1-3) over (3.0-4) ... Selecting previously unselected package javascript-common. Preparing to unpack .../javascript-common_11_all.deb ... Unpacking javascript-common (11) ... Selecting previously unselected package kalign. Preparing to unpack .../kalign_1%3a2.03+20110620-2_amd64.deb ... Unpacking kalign (1:2.03+20110620-2) ... Selecting previously unselected package libalgorithm-c3-perl. Preparing to unpack .../libalgorithm-c3-perl_0.09-1_all.deb ... Unpacking libalgorithm-c3-perl (0.09-1) ... Selecting previously unselected package libarchive-extract-perl. Preparing to unpack .../libarchive-extract-perl_0.72-1_all.deb ... Unpacking libarchive-extract-perl (0.72-1) ... Selecting previously unselected package libauthen-sasl-perl. Preparing to unpack .../libauthen-sasl-perl_2.1600-1_all.deb ... Unpacking libauthen-sasl-perl (2.1600-1) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../libcgi-pm-perl_4.09-1_all.deb ... Unpacking libcgi-pm-perl (4.09-1) ... Selecting previously unselected package libcgi-fast-perl. Preparing to unpack .../libcgi-fast-perl_1%3a2.04-1_all.deb ... Unpacking libcgi-fast-perl (1:2.04-1) ... Selecting previously unselected package libclass-c3-perl. Preparing to unpack .../libclass-c3-perl_0.26-1_all.deb ... Unpacking libclass-c3-perl (0.26-1) ... Selecting previously unselected package libclass-c3-xs-perl. Preparing to unpack .../libclass-c3-xs-perl_0.13-2+b1_amd64.deb ... Unpacking libclass-c3-xs-perl (0.13-2+b1) ... Selecting previously unselected package libcpan-meta-perl. Preparing to unpack .../libcpan-meta-perl_2.142690-1_all.deb ... Unpacking libcpan-meta-perl (2.142690-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../libparams-util-perl_1.07-2+b1_amd64.deb ... Unpacking libparams-util-perl (1.07-2+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../libsub-install-perl_0.928-1_all.deb ... Unpacking libsub-install-perl (0.928-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../libdata-optlist-perl_0.109-1_all.deb ... Unpacking libdata-optlist-perl (0.109-1) ... Selecting previously unselected package libmro-compat-perl. Preparing to unpack .../libmro-compat-perl_0.12-1_all.deb ... Unpacking libmro-compat-perl (0.12-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../libsub-exporter-perl_0.986-1_all.deb ... Unpacking libsub-exporter-perl (0.986-1) ... Selecting previously unselected package libdata-section-perl. Preparing to unpack .../libdata-section-perl_0.200006-1_all.deb ... Unpacking libdata-section-perl (0.200006-1) ... Preparing to unpack .../libhtml-format-perl_2.11-1_all.deb ... Unpacking libhtml-format-perl (2.11-1) over (2.10-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../libjs-jquery_1.7.2+dfsg-3.2_all.deb ... Unpacking libjs-jquery (1.7.2+dfsg-3.2) ... Selecting previously unselected package liblog-message-perl. Preparing to unpack .../liblog-message-perl_0.8-1_all.deb ... Unpacking liblog-message-perl (0.8-1) ... Selecting previously unselected package liblog-message-simple-perl. Preparing to unpack .../liblog-message-simple-perl_0.10-2_all.deb ... Unpacking liblog-message-simple-perl (0.10-2) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../libmodule-build-perl_0.421000-2+deb8u1_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.421000-2+deb8u1) ... Selecting previously unselected package libmodule-pluggable-perl. Preparing to unpack .../libmodule-pluggable-perl_5.1-1_all.deb ... Unpacking libmodule-pluggable-perl (5.1-1) ... Selecting previously unselected package libmodule-signature-perl. Preparing to unpack .../libmodule-signature-perl_0.73-1+deb8u2_all.deb ... Unpacking libmodule-signature-perl (0.73-1+deb8u2) ... Selecting previously unselected package libpackage-constants-perl. Preparing to unpack .../libpackage-constants-perl_0.04-1_all.deb ... Unpacking libpackage-constants-perl (0.04-1) ... Selecting previously unselected package libpam-cap:amd64. Preparing to unpack .../libpam-cap_1%3a2.24-8_amd64.deb ... Unpacking libpam-cap:amd64 (1:2.24-8) ... Selecting previously unselected package libpod-latex-perl. Preparing to unpack .../libpod-latex-perl_0.61-1_all.deb ... Adding 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Adding 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Unpacking libpod-latex-perl (0.61-1) ... Selecting previously unselected package libregexp-common-perl. Preparing to unpack .../libregexp-common-perl_2013031301-1_all.deb ... Unpacking libregexp-common-perl (2013031301-1) ... Selecting previously unselected package libpod-readme-perl. Preparing to unpack .../libpod-readme-perl_0.11-1_all.deb ... Unpacking libpod-readme-perl (0.11-1) ... Selecting previously unselected package libtext-template-perl. Preparing to unpack .../libtext-template-perl_1.46-1_all.deb ... Unpacking libtext-template-perl (1.46-1) ... Selecting previously unselected package libsoftware-license-perl. Preparing to unpack .../libsoftware-license-perl_0.103010-3_all.deb ... Unpacking libsoftware-license-perl (0.103010-3) ... Selecting previously unselected package libterm-ui-perl. Preparing to unpack .../libterm-ui-perl_0.42-1_all.deb ... Unpacking libterm-ui-perl (0.42-1) ... Selecting previously unselected package libtext-soundex-perl. Preparing to unpack .../libtext-soundex-perl_3.4-1+b2_amd64.deb ... Unpacking libtext-soundex-perl (3.4-1+b2) ... Preparing to unpack .../libxml-namespacesupport-perl_1.11-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.11-1) over (1.09-3) ... Selecting previously unselected package libxmlrpc-lite-perl. Preparing to unpack .../libxmlrpc-lite-perl_0.717-1_all.deb ... Unpacking libxmlrpc-lite-perl (0.717-1) ... Preparing to unpack .../mafft_7.205-1_amd64.deb ... Unpacking mafft (7.205-1) over (6.864-1) ... Selecting previously unselected package mustang. Preparing to unpack .../mustang_3.2.2-1_amd64.deb ... Unpacking mustang (3.2.2-1) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../ncbi-blast+_2.2.29-3_amd64.deb ... Unpacking ncbi-blast+ (2.2.29-3) ... Selecting previously unselected package poa. Preparing to unpack .../poa_2.0+20060928-3_amd64.deb ... Unpacking poa (2.0+20060928-3) ... Selecting previously unselected package prank. Preparing to unpack .../prank_0.0.140110-1_amd64.deb ... Unpacking prank (0.0.140110-1) ... Selecting previously unselected package proda. Preparing to unpack .../archives/proda_1.0-8_amd64.deb ... Unpacking proda (1.0-8) ... Selecting previously unselected package psmisc. Preparing to unpack .../psmisc_22.21-2_amd64.deb ... Unpacking psmisc (22.21-2) ... Selecting previously unselected package rename. Preparing to unpack .../archives/rename_0.20-3_all.deb ... Unpacking rename (0.20-3) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../rubygems-integration_1.8_all.deb ... Unpacking rubygems-integration (1.8) ... Selecting previously unselected package libruby2.1:amd64. Preparing to unpack .../libruby2.1_2.1.5-2+deb8u3_amd64.deb ... Unpacking libruby2.1:amd64 (2.1.5-2+deb8u3) ... Selecting previously unselected package ruby2.1. Preparing to unpack .../ruby2.1_2.1.5-2+deb8u3_amd64.deb ... Unpacking ruby2.1 (2.1.5-2+deb8u3) ... Preparing to unpack .../ruby_1%3a2.1.5+deb8u2_all.deb ... Unpacking ruby (1:2.1.5+deb8u2) over (1:1.9.3) ... Preparing to unpack .../ruby-bio_1.4.3.0001-2_all.deb ... Unpacking ruby-bio (1.4.3.0001-2) over (1.4.2-3) ... Preparing to unpack .../sim4_0.0.20121010-1_amd64.deb ... Unpacking sim4 (0.0.20121010-1) over (0.0.20030921-3) ... Preparing to unpack .../t-coffee_11.00.8cbe486-1_amd64.deb ... Unpacking t-coffee (11.00.8cbe486-1) over (9.02.r1228-2) ... Preparing to unpack .../tm-align_20140601+dfsg-1_amd64.deb ... Unpacking tm-align (20140601+dfsg-1) over (20120507-1) ... Preparing to unpack .../lynx-cur_2.8.9dev1-2+deb8u1_amd64.deb ... Unpacking lynx-cur (2.8.9dev1-2+deb8u1) over (2.8.8dev.12-2) ... Preparing to unpack .../lynx_2.8.9dev1-2+deb8u1_all.deb ... Unpacking lynx (2.8.9dev1-2+deb8u1) over (2.8.8dev.12-2) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up iproute2 (3.16.0-2) ... Installing new version of config file /etc/iproute2/ematch_map ... Setting up iproute (1:3.16.0-2) ... Setting up netbase (5.3) ... Installing new version of config file /etc/protocols ... Installing new version of config file /etc/services ... Setting up ifupdown (0.7.53.1) ... Installing new version of config file /etc/init.d/networking ... Installing new version of config file /etc/init/network-interface-container.conf ... Installing new version of config file /etc/init/network-interface-security.conf ... Installing new version of config file /etc/init/network-interface.conf ... Installing new version of config file /etc/init/networking.conf ... Setting up perl-modules (5.20.2-3+deb8u11) ... Setting up libgdbm3:amd64 (1.8.3-13.1) ... Setting up perl (5.20.2-3+deb8u11) ... Setting up libsocket-perl (2.016-1) ... Setting up libio-socket-ip-perl (0.32-1) ... Setting up libtext-charwidth-perl (0.04-7+b3) ... Setting up liburi-perl (1.64-1) ... Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up liblocale-gettext-perl (1.05-8+b1) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Checking for services that may need to be restarted...done. Checking for services that may need to be restarted...done. Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libtext-iconv-perl (1.7-5+b2) ... Setting up libcrypt-ssleay-perl (0.58-1+b2) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b1) ... Setting up libfcgi-perl (0.77-1+deb8u1) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up openssl (1.0.1t-1+deb8u8) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 39 added, 36 removed; done. Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libnet-http-perl (6.07-1) ... Setting up libclass-inspector-perl (1.28-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libconvert-binhex-perl (1.123-2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libnet-smtp-ssl-perl (1.01-3) ... Setting up libmailtools-perl (2.13-1) ... Setting up libmime-tools-perl (5.505-1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-6) ... Setting up libnettle4:amd64 (2.7.1-5+deb8u2) ... Setting up libhogweed2:amd64 (2.7.1-5+deb8u2) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u3) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Setting up libgpm2:amd64 (1.20.4-6.1+b2) ... Setting up libidn11:amd64 (1.29-1+deb8u2) ... Setting up libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Setting up file (1:5.22+15-2+deb8u4) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up mime-support (3.58) ... Installing new version of config file /etc/mime.types ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7 (2.7.9-2+deb8u1) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libcap-ng0:amd64 (0.7.4-2) ... Setting up libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Setting up libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libgomp1:amd64 (4.9.2-10+deb8u1) ... Setting up libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Setting up ncbi-data (6.1.20120620-8) ... Setting up libncbi6:amd64 (6.1.20120620-8) ... Setting up dbus (1.8.22-0+deb8u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libpam-systemd:amd64 (215-17+deb8u7) ... Setting up libyaml-0-2:amd64 (0.1.6-3) ... Setting up isc-dhcp-common (4.3.1-6+deb8u3) ... Setting up isc-dhcp-client (4.3.1-6+deb8u3) ... Setting up libxtables10 (1.4.21-2+b1) ... Setting up debconf-i18n (1.5.56+deb8u1) ... Setting up libclass-isa-perl (0.36-5) ... Setting up libswitch-perl (2.17-2) ... Setting up ucf (3.0030) ... Setting up xz-utils (5.1.1alpha+20120614-2+b3) ... Setting up amap-align (2.2-4) ... Setting up blast2 (1:2.2.26.20120620-8) ... Setting up libargtable2-0 (12-1.1) ... Setting up clustalo (1.2.1-1) ... Setting up clustalw (2.1+lgpl-4) ... Setting up dialign-tx-data (1.0.2-7) ... Setting up dialign-tx (1.0.2-7) ... Setting up hmmer (3.1b1-3) ... Setting up javascript-common (11) ... Setting up kalign (1:2.03+20110620-2) ... Setting up libalgorithm-c3-perl (0.09-1) ... Setting up libarchive-extract-perl (0.72-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libcgi-pm-perl (4.09-1) ... Setting up libcgi-fast-perl (1:2.04-1) ... Setting up libclass-c3-perl (0.26-1) ... Setting up libclass-c3-xs-perl (0.13-2+b1) ... Setting up libcpan-meta-perl (2.142690-1) ... Setting up libparams-util-perl (1.07-2+b1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libdata-optlist-perl (0.109-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up libdata-section-perl (0.200006-1) ... Setting up libhtml-format-perl (2.11-1) ... Setting up libjs-jquery (1.7.2+dfsg-3.2) ... Setting up liblog-message-perl (0.8-1) ... Setting up liblog-message-simple-perl (0.10-2) ... Setting up libmodule-build-perl (0.421000-2+deb8u1) ... Setting up libmodule-pluggable-perl (5.1-1) ... Setting up libmodule-signature-perl (0.73-1+deb8u2) ... Setting up libpackage-constants-perl (0.04-1) ... Setting up libpam-cap:amd64 (1:2.24-8) ... Setting up libpod-latex-perl (0.61-1) ... Setting up libregexp-common-perl (2013031301-1) ... Setting up libpod-readme-perl (0.11-1) ... Setting up libtext-template-perl (1.46-1) ... Setting up libsoftware-license-perl (0.103010-3) ... Setting up libterm-ui-perl (0.42-1) ... Setting up libtext-soundex-perl (3.4-1+b2) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up mafft (7.205-1) ... Setting up mustang (3.2.2-1) ... Setting up ncbi-blast+ (2.2.29-3) ... Setting up poa (2.0+20060928-3) ... Setting up prank (0.0.140110-1) ... Setting up proda (1.0-8) ... Setting up psmisc (22.21-2) ... Setting up rename (0.20-3) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up rubygems-integration (1.8) ... Setting up libruby2.1:amd64 (2.1.5-2+deb8u3) ... Setting up ruby2.1 (2.1.5-2+deb8u3) ... Setting up ruby (1:2.1.5+deb8u2) ... Setting up ruby-bio (1.4.3.0001-2) ... Setting up sim4 (0.0.20121010-1) ... Setting up t-coffee (11.00.8cbe486-1) ... Setting up tm-align (20140601+dfsg-1) ... Setting up lynx-cur (2.8.9dev1-2+deb8u1) ... Installing new version of config file /etc/lynx-cur/lynx.cfg ... Setting up lynx (2.8.9dev1-2+deb8u1) ... Setting up libwww-perl (6.08-1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libxml-parser-perl (2.41-3) ... Setting up libsoap-lite-perl (1.11-1) ... Setting up libxmlrpc-lite-perl (0.717-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. 1m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', '-yf', 'dist-upgrade'] 1m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m24.6s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 1m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-cache', 'show', '--no-all-versions', 'libbio-ruby1.8'] 1m24.6s DUMP: Package: libbio-ruby1.8 Status: install ok installed Priority: extra Section: oldlibs Installed-Size: 78 Maintainer: Debian Ruby Extras Maintainers Architecture: all Source: ruby-bio Version: 1.4.2-3 Depends: ruby-bio Description: Transitional package for ruby-bio This is a transitional package to ease upgrades to the ruby-bio package. It can safely be removed. Description-md5: 50e139bff9fc1afca1065d8e0c73c23b Homepage: http://www.bioruby.org/ 1m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-cache', 'show', '--no-all-versions', 'libbio-ruby1.8'] 1m24.6s INFO: apt-cache does not know about any of the requested packages 1m24.6s INFO: Running scripts post_distupgrade 1m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_distupgrade_exceptions'] 1m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_distupgrade_exceptions'] 1m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_distupgrade_zz_backports'] 1m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_distupgrade_zz_backports'] 1m24.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 1m25.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 1m25.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 1m27.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 1m27.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 1m28.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 1m29.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpUtippM', '-ac', '--ignore-obsolete'] 1m31.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpUtippM', '-ac', '--ignore-obsolete'] 1m31.1s INFO: Running scripts pre_remove 1m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_remove_exceptions'] 1m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/pre_remove_exceptions'] 1m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m34.0s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed amap-align amap-align 2.2-4 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed blast2 blast2 1:2.2.26.20120620-8 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed ca-certificates ca-certificates 20141019+deb8u3 install ok installed clustalo clustalo 1.2.1-1 install ok installed clustalw clustalw 2.1+lgpl-4 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed dbus dbus 1.8.22-0+deb8u1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed dialign-tx dialign-tx 1.0.2-7 install ok installed dialign-tx-data dialign-tx-data 1.0.2-7 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed file file 1:5.22+15-2+deb8u4 install ok installed findutils findutils 4.4.2-9+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hmmer hmmer 3.1b1-3 install ok installed hostname hostname 3.15 install ok installed ifupdown ifupdown 0.7.53.1 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed iproute iproute 1:3.16.0-2 install ok installed iproute2 iproute2 3.16.0-2 install ok installed isc-dhcp-client isc-dhcp-client 4.3.1-6+deb8u3 install ok installed isc-dhcp-common isc-dhcp-common 4.3.1-6+deb8u3 install ok installed javascript-common javascript-common 11 install ok installed kalign kalign 1:2.03+20110620-2 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.09-1 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libarchive-extract-perl libarchive-extract-perl 0.72-1 install ok installed libargtable2-0 libargtable2-0 12-1.1 install ok installed libatm1:amd64 libatm1 1:2.5.1-1.5 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libbio-ruby1.8 libbio-ruby1.8 1.4.2-3 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbsd0:amd64 libbsd0 0.7.0-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.4-2 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.04-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.09-1 install ok installed libclass-c3-perl libclass-c3-perl 0.26-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.13-2+b1 install ok installed libclass-inspector-perl libclass-inspector-perl 1.28-1 install ok installed libclass-isa-perl libclass-isa-perl 0.36-5 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.123-2 install ok installed libcpan-meta-perl libcpan-meta-perl 2.142690-1 install ok installed libcrypt-ssleay-perl libcrypt-ssleay-perl 0.58-1+b2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdata-optlist-perl libdata-optlist-perl 0.109-1 install ok installed libdata-section-perl libdata-section-perl 0.200006-1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.8.22-0+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libdns-export100 libdns-export100 1:9.9.5.dfsg-9+deb8u15 install ok installed libencode-locale-perl libencode-locale-perl 1.03-1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u4 install ok installed libfcgi-perl libfcgi-perl 0.77-1+deb8u1 install ok installed libffi5:amd64 libffi5 3.0.10-3 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt11:amd64 libgcrypt11 1.5.0-5+deb7u4 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-13.1 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u1 install ok installed libgmp10:amd64 libgmp10 2:6.0.0+dfsg-6 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgnutls26:amd64 libgnutls26 2.12.20-8+deb7u5 install ok installed libgomp1:amd64 libgomp1 4.9.2-10+deb8u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libgpm2:amd64 libgpm2 1.20.4-6.1+b2 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.11-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.71-1+b3 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-2 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.06-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libidn11:amd64 libidn11 1.29-1+deb8u2 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ip-perl libio-socket-ip-perl 0.32-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.002-2+deb8u3 install ok installed libio-stringy-perl libio-stringy-perl 2.110-5 install ok installed libirs-export91 libirs-export91 1:9.9.5.dfsg-9+deb8u15 install ok installed libisc-export95 libisc-export95 1:9.9.5.dfsg-9+deb8u15 install ok installed libisccfg-export90 libisccfg-export90 1:9.9.5.dfsg-9+deb8u15 install ok installed libjs-jquery libjs-jquery 1.7.2+dfsg-3.2 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblog-message-perl liblog-message-perl 0.8-1 install ok installed liblog-message-simple-perl liblog-message-simple-perl 0.10-2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmagic1:amd64 libmagic1 1:5.22+15-2+deb8u4 install ok installed libmailtools-perl libmailtools-perl 2.13-1 install ok installed libmime-tools-perl libmime-tools-perl 5.505-1 install ok installed libmodule-build-perl libmodule-build-perl 0.421000-2+deb8u1 install ok installed libmodule-pluggable-perl libmodule-pluggable-perl 5.1-1 install ok installed libmodule-signature-perl libmodule-signature-perl 0.73-1+deb8u2 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libmro-compat-perl libmro-compat-perl 0.12-1 install ok installed libncbi6:amd64 libncbi6 6.1.20120620-8 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libnet-http-perl libnet-http-perl 6.07-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.01-3 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.65-1+deb8u1 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b1 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.20.7-1 install ok installed libpackage-constants-perl libpackage-constants-perl 0.04-1 install ok installed libpam-cap:amd64 libpam-cap 1:2.24-8 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam-systemd:amd64 libpam-systemd 215-17+deb8u7 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libparams-util-perl libparams-util-perl 1.07-2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libpod-latex-perl libpod-latex-perl 0.61-1 install ok installed libpod-readme-perl libpod-readme-perl 0.11-1 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.9-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.9-2+deb8u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.9-2+deb8u1 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libregexp-common-perl libregexp-common-perl 2013031301-1 install ok installed libruby1.9.1 libruby1.9.1 1.9.3.194-8.1+deb7u5 install ok installed libruby2.1:amd64 libruby2.1 2.1.5-2+deb8u3 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsoap-lite-perl libsoap-lite-perl 1.11-1 install ok installed libsocket-perl libsocket-perl 2.016-1 install ok installed libsoftware-license-perl libsoftware-license-perl 0.103010-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u2 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u8 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libsub-exporter-perl libsub-exporter-perl 0.986-1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libswitch-perl libswitch-perl 2.17-2 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtask-weaken-perl libtask-weaken-perl 1.04-1 install ok installed libtasn1-3:amd64 libtasn1-3 2.13-2+deb7u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.2-3+deb8u3 install ok installed libterm-ui-perl libterm-ui-perl 0.42-1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-soundex-perl libtext-soundex-perl 3.4-1+b2 install ok installed libtext-template-perl libtext-template-perl 1.46-1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed liburi-perl liburi-perl 1.64-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libwww-perl libwww-perl 6.08-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.11-1 install ok installed libxml-parser-perl libxml-parser-perl 2.41-3 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.07-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.40-2 install ok installed libxml-sax-perl libxml-sax-perl 0.99+dfsg-2 install ok installed libxml-simple-perl libxml-simple-perl 2.20-1 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-1 install ok installed libxtables10 libxtables10 1.4.21-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.1.6-3 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed lynx lynx 2.8.9dev1-2+deb8u1 install ok installed lynx-cur lynx-cur 2.8.9dev1-2+deb8u1 install ok installed mafft mafft 7.205-1 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.58 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed muscle muscle 1:3.8.31-1 install ok installed mustang mustang 3.2.2-1 install ok installed ncbi-blast+ ncbi-blast+ 2.2.29-3 install ok installed ncbi-data ncbi-data 6.1.20120620-8 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed netbase netbase 5.3 install ok installed openssl openssl 1.0.1t-1+deb8u8 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl perl 5.20.2-3+deb8u11 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed perl-modules perl-modules 5.20.2-3+deb8u11 install ok installed poa poa 2.0+20060928-3 install ok installed prank prank 0.0.140110-1 install ok installed probcons probcons 1.12-9 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed proda proda 1.0-8 install ok installed psmisc psmisc 22.21-2 install ok installed python python 2.7.9-1 install ok installed python-minimal python-minimal 2.7.9-1 install ok installed python2.7 python2.7 2.7.9-2+deb8u1 install ok installed python2.7-minimal python2.7-minimal 2.7.9-2+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed rename rename 0.20-3 install ok installed ruby ruby 1:2.1.5+deb8u2 install ok installed ruby-bio ruby-bio 1.4.3.0001-2 install ok installed ruby1.9.1 ruby1.9.1 1.9.3.194-8.1+deb7u5 install ok installed ruby2.1 ruby2.1 2.1.5-2+deb8u3 install ok installed rubygems-integration rubygems-integration 1.8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed sim4 sim4 0.0.20121010-1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit sysvinit 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed t-coffee t-coffee 11.00.8cbe486-1 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tm-align tm-align 20140601+dfsg-1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2+b3 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 1m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', 'remove', 'libnet-ssleay-perl', 'libxml-sax-expat-perl', 'libmime-tools-perl', 'iproute', 'libmailtools-perl', 'isc-dhcp-common', 'libjs-jquery', 'liblog-message-perl', 'lynx-cur', 'libargtable2-0', 'libmodule-build-perl', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'libnettle4:amd64', 'libclass-c3-perl', 'libmro-compat-perl', 'libclass-c3-xs-perl', 'sim4', 'python', 'libio-html-perl', 'libalgorithm-c3-perl', 'libsoftware-license-perl', 'libtext-template-perl', 'libtext-soundex-perl', 'ca-certificates', 'libfile-listing-perl', 'libp11-kit0:amd64', 'libbsd0:amd64', 'libio-stringy-perl', 'libpython2.7-stdlib:amd64', 'libxml-namespacesupport-perl', 'libisc-export95', 'libgnutls26:amd64', 'libcpan-meta-perl', 'liblog-message-simple-perl', 'dialign-tx', 'poa', 'libsoap-lite-perl', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libsub-install-perl', 'hmmer', 'libmagic1:amd64', 'mustang', 'ruby1.9.1', 'libwww-perl', 'libpackage-constants-perl', 'libgomp1:amd64', 'libpod-readme-perl', 'libsub-exporter-perl', 'blast2', 'rubygems-integration', 'libgmp10:amd64', 'libquadmath0:amd64', 'libxml-sax-base-perl', 'libio-sessiondata-perl', 'libhtml-format-perl', 'mafft', 'libossp-uuid-perl', 'libhtml-parser-perl', 'libhttp-message-perl', 'libcrypt-ssleay-perl', 'python2.7', 'libxml-sax-perl', 'libgnutls-deb0-28:amd64', 'libcgi-fast-perl', 'libhtml-form-perl', 'probcons', 'libxml-parser-perl', 'dialign-tx-data', 'python-minimal', 'libclass-inspector-perl', 'libruby2.1:amd64', 'ncbi-data', 'libregexp-common-perl', 'libhtml-tagset-perl', 'libencode-locale-perl', 'libxmlrpc-lite-perl', 't-coffee', 'libpython-stdlib:amd64', 'libdata-section-perl', 'libxml-simple-perl', 'libconvert-binhex-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'mime-support', 'prank', 'libclass-isa-perl', 'libatm1:amd64', 'libhttp-negotiate-perl', 'libterm-ui-perl', 'perl', 'libsqlite3-0:amd64', 'libhttp-daemon-perl', 'libio-socket-ip-perl', 'ruby2.1', 'netbase', 'libpod-latex-perl', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libruby1.9.1', 'libhttp-cookies-perl', 'libfcgi-perl', 'libauthen-sasl-perl', 'libnet-smtp-ssl-perl', 'libmodule-pluggable-perl', 'libtask-weaken-perl', 'ruby', 'ncbi-blast+-', 'liblwp-mediatypes-perl', 'clustalw', 'libncbi6:amd64', 'kalign', 'libffi6:amd64', 'libwww-robotrules-perl', 'libisccfg-export90', 'libdns-export100', 'lynx', 'libarchive-extract-perl', 'clustalo', 'rename', 'ifupdown', 'ruby-bio', 'openssl', 'libffi5:amd64', 'libpython2.7-minimal:amd64', 'file', 'proda', 'libgfortran3:amd64', 'libxtables10', 'libdata-optlist-perl', 'libsocket-perl', 'libtimedate-perl', 'libyaml-0-2:amd64', 'libmodule-signature-perl', 'libnet-http-perl', 'liburi-perl', 'tm-align', 'perl-modules', 'libirs-export91', 'liblwp-protocol-https-perl', 'libidn11:amd64', 'javascript-common', 'muscle', 'libhtml-tree-perl', 'libswitch-perl', 'isc-dhcp-client', 'libhttp-date-perl', 'python2.7-minimal', 'amap-align', 'iproute2', 'libhogweed2:amd64', 'libparams-util-perl', 'libbio-ruby1.8'] 1m37.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: amap-align blast2 ca-certificates clustalo clustalw dialign-tx dialign-tx-data file hmmer ifupdown iproute iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign libalgorithm-c3-perl libarchive-extract-perl libargtable2-0 libatm1 libauthen-sasl-perl libbio-ruby1.8 libbsd0 libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-isa-perl libconvert-binhex-perl libcpan-meta-perl libcrypt-ssleay-perl libdata-optlist-perl libdata-section-perl libdb5.1 libdns-export100 libencode-locale-perl libfcgi-perl libffi5 libffi6 libfile-listing-perl libfont-afm-perl libgcrypt11 libgdbm3 libgfortran3 libgmp10 libgnutls-deb0-28 libgnutls26 libgomp1 libhogweed2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn11 libio-html-perl libio-sessiondata-perl libio-socket-ip-perl libio-socket-ssl-perl libio-stringy-perl libirs-export91 libisc-export95 libisccfg-export90 libjs-jquery liblog-message-perl liblog-message-simple-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmime-tools-perl libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl libmro-compat-perl libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libparams-util-perl libpod-latex-perl libpod-readme-perl libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl libruby1.9.1 libruby2.1 libsoap-lite-perl libsocket-perl libsoftware-license-perl libsqlite3-0 libssl1.0.0 libsub-exporter-perl libsub-install-perl libswitch-perl libtask-weaken-perl libtasn1-3 libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libxmlrpc-lite-perl libxtables10 libyaml-0-2 lynx lynx-cur mafft mime-support muscle mustang ncbi-blast+ ncbi-data netbase openssl perl perl-modules poa prank probcons proda python python-minimal python2.7 python2.7-minimal rename ruby ruby-bio ruby1.9.1 ruby2.1 rubygems-integration sim4 t-coffee tm-align 0 upgraded, 0 newly installed, 156 to remove and 0 not upgraded. After this operation, 229 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15217 files and directories currently installed.) Removing amap-align (2.2-4) ... Removing blast2 (1:2.2.26.20120620-8) ... Removing libbio-ruby1.8 (1.4.2-3) ... Removing ruby-bio (1.4.3.0001-2) ... Removing ruby (1:2.1.5+deb8u2) ... Removing ruby2.1 (2.1.5-2+deb8u3) ... Removing rubygems-integration (1.8) ... Removing libxml-simple-perl (2.20-1) ... Removing libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing clustalo (1.2.1-1) ... Removing clustalw (2.1+lgpl-4) ... Removing dialign-tx (1.0.2-7) ... Removing dialign-tx-data (1.0.2-7) ... Removing file (1:5.22+15-2+deb8u4) ... Removing hmmer (3.1b1-3) ... Removing ifupdown (0.7.53.1) ... Removing iproute (1:3.16.0-2) ... Removing isc-dhcp-client (4.3.1-6+deb8u3) ... Removing iproute2 (3.16.0-2) ... Removing isc-dhcp-common (4.3.1-6+deb8u3) ... Removing javascript-common (11) ... Removing kalign (1:2.03+20110620-2) ... Removing libsoftware-license-perl (0.103010-3) ... Removing libdata-section-perl (0.200006-1) ... Removing libmro-compat-perl (0.12-1) ... Removing libclass-c3-perl (0.26-1) ... Removing libalgorithm-c3-perl (0.09-1) ... Removing libarchive-extract-perl (0.72-1) ... Removing libargtable2-0 (12-1.1) ... Removing libatm1:amd64 (1:2.5.1-1.5) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing lynx (2.8.9dev1-2+deb8u1) ... Removing lynx-cur (2.8.9dev1-2+deb8u1) ... Removing libbsd0:amd64 (0.7.0-2) ... Removing libcgi-fast-perl (1:2.04-1) ... Removing libcgi-pm-perl (4.09-1) ... Removing libclass-c3-xs-perl (0.13-2+b1) ... Removing libxmlrpc-lite-perl (0.717-1) ... Removing libsoap-lite-perl (1.11-1) ... Removing libclass-inspector-perl (1.28-1) ... Removing libclass-isa-perl (0.36-5) ... Removing libmime-tools-perl (5.505-1) ... Removing libconvert-binhex-perl (1.123-2) ... Removing libmodule-build-perl (0.421000-2+deb8u1) ... Removing 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Removing 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Removing libcpan-meta-perl (2.142690-1) ... Removing libcrypt-ssleay-perl (0.58-1+b2) ... Removing libsub-exporter-perl (0.986-1) ... Removing libdata-optlist-perl (0.109-1) ... Removing libdb5.1:amd64 (5.1.29-5) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Removing libfcgi-perl (0.77-1+deb8u1) ... Removing ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Removing libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Removing libffi5:amd64 (3.0.10-3) ... Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Removing ncbi-blast+ (2.2.29-3) ... Removing python (2.7.9-1) ... Removing python2.7 (2.7.9-2+deb8u1) ... Removing libhtml-format-perl (2.11-1) ... Removing libfont-afm-perl (1.20-1) ... Removing libgnutls26:amd64 (2.12.20-8+deb7u5) ... Removing libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Removing rename (0.20-3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing libossp-uuid-perl (1.6.2-1.5+b1) ... Removing tm-align (20140601+dfsg-1) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgomp1:amd64 (4.9.2-10+deb8u1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libidn11:amd64 (1.29-1+deb8u2) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libio-socket-ip-perl (0.32-1) ... Removing libmailtools-perl (2.13-1) ... Removing libnet-smtp-ssl-perl (1.01-3) ... Removing libio-stringy-perl (2.110-5) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Removing libjs-jquery (1.7.2+dfsg-3.2) ... Removing libterm-ui-perl (0.42-1) ... Removing liblog-message-simple-perl (0.10-2) ... Removing liblog-message-perl (0.8-1) ... Removing libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Removing libmodule-pluggable-perl (5.1-1) ... Removing libmodule-signature-perl (0.73-1+deb8u2) ... Removing libncbi6:amd64 (6.1.20120620-8) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Removing libpackage-constants-perl (0.04-1) ... Removing libparams-util-perl (1.07-2+b1) ... Removing libpod-latex-perl (0.61-1) ... Removing 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Removing 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Removing libpod-readme-perl (0.11-1) ... Removing libpython-stdlib:amd64 (2.7.9-1) ... Removing python-minimal (2.7.9-1) ... Removing python2.7-minimal (2.7.9-2+deb8u1) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Removing libregexp-common-perl (2013031301-1) ... Removing libsocket-perl (2.016-1) ... Removing libsub-install-perl (0.928-1) ... Removing libswitch-perl (2.17-2) ... Removing libtask-weaken-perl (1.04-1) ... Removing libtasn1-3:amd64 (2.13-2+deb7u2) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Removing libtext-soundex-perl (3.4-1+b2) ... Removing libtext-template-perl (1.46-1) ... Removing libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.11-1) ... Removing libxml-sax-base-perl (1.07-1) ... Removing libxtables10 (1.4.21-2+b1) ... Removing libyaml-0-2:amd64 (0.1.6-3) ... Removing mafft (7.205-1) ... Removing muscle (1:3.8.31-1) ... Removing mustang (3.2.2-1) ... Removing ncbi-data (6.1.20120620-8) ... Removing poa (2.0+20060928-3) ... Removing prank (0.0.140110-1) ... Removing probcons (1.12-9) ... Removing proda (1.0-8) ... Removing sim4 (0.0.20121010-1) ... Removing t-coffee (11.00.8cbe486-1) ... Removing libxml-parser-perl (2.41-3) ... Removing libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing mime-support (3.58) ... Removing libwww-perl (6.08-1) ... Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-1) ... Removing libhtml-parser-perl (3.71-1+b3) ... Removing libhtml-tagset-perl (3.20-2) ... Removing libhttp-cookies-perl (6.01-1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libnet-http-perl (6.07-1) ... Removing libio-socket-ssl-perl (2.002-2+deb8u3) ... Removing libnet-ssleay-perl (1.65-1+deb8u1) ... Removing libwww-robotrules-perl (6.01-1) ... Removing netbase (5.3) ... Removing ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-message-perl (6.06-1) ... Removing libencode-locale-perl (1.03-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing openssl (1.0.1t-1+deb8u8) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libtimedate-perl (2.3000-2) ... Removing liburi-perl (1.64-1) ... Removing perl (5.20.2-3+deb8u11) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Removing perl-modules (5.20.2-3+deb8u11) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 1m37.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', 'remove', 'libnet-ssleay-perl', 'libxml-sax-expat-perl', 'libmime-tools-perl', 'iproute', 'libmailtools-perl', 'isc-dhcp-common', 'libjs-jquery', 'liblog-message-perl', 'lynx-cur', 'libargtable2-0', 'libmodule-build-perl', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'libnettle4:amd64', 'libclass-c3-perl', 'libmro-compat-perl', 'libclass-c3-xs-perl', 'sim4', 'python', 'libio-html-perl', 'libalgorithm-c3-perl', 'libsoftware-license-perl', 'libtext-template-perl', 'libtext-soundex-perl', 'ca-certificates', 'libfile-listing-perl', 'libp11-kit0:amd64', 'libbsd0:amd64', 'libio-stringy-perl', 'libpython2.7-stdlib:amd64', 'libxml-namespacesupport-perl', 'libisc-export95', 'libgnutls26:amd64', 'libcpan-meta-perl', 'liblog-message-simple-perl', 'dialign-tx', 'poa', 'libsoap-lite-perl', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libsub-install-perl', 'hmmer', 'libmagic1:amd64', 'mustang', 'ruby1.9.1', 'libwww-perl', 'libpackage-constants-perl', 'libgomp1:amd64', 'libpod-readme-perl', 'libsub-exporter-perl', 'blast2', 'rubygems-integration', 'libgmp10:amd64', 'libquadmath0:amd64', 'libxml-sax-base-perl', 'libio-sessiondata-perl', 'libhtml-format-perl', 'mafft', 'libossp-uuid-perl', 'libhtml-parser-perl', 'libhttp-message-perl', 'libcrypt-ssleay-perl', 'python2.7', 'libxml-sax-perl', 'libgnutls-deb0-28:amd64', 'libcgi-fast-perl', 'libhtml-form-perl', 'probcons', 'libxml-parser-perl', 'dialign-tx-data', 'python-minimal', 'libclass-inspector-perl', 'libruby2.1:amd64', 'ncbi-data', 'libregexp-common-perl', 'libhtml-tagset-perl', 'libencode-locale-perl', 'libxmlrpc-lite-perl', 't-coffee', 'libpython-stdlib:amd64', 'libdata-section-perl', 'libxml-simple-perl', 'libconvert-binhex-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'mime-support', 'prank', 'libclass-isa-perl', 'libatm1:amd64', 'libhttp-negotiate-perl', 'libterm-ui-perl', 'perl', 'libsqlite3-0:amd64', 'libhttp-daemon-perl', 'libio-socket-ip-perl', 'ruby2.1', 'netbase', 'libpod-latex-perl', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libruby1.9.1', 'libhttp-cookies-perl', 'libfcgi-perl', 'libauthen-sasl-perl', 'libnet-smtp-ssl-perl', 'libmodule-pluggable-perl', 'libtask-weaken-perl', 'ruby', 'ncbi-blast+-', 'liblwp-mediatypes-perl', 'clustalw', 'libncbi6:amd64', 'kalign', 'libffi6:amd64', 'libwww-robotrules-perl', 'libisccfg-export90', 'libdns-export100', 'lynx', 'libarchive-extract-perl', 'clustalo', 'rename', 'ifupdown', 'ruby-bio', 'openssl', 'libffi5:amd64', 'libpython2.7-minimal:amd64', 'file', 'proda', 'libgfortran3:amd64', 'libxtables10', 'libdata-optlist-perl', 'libsocket-perl', 'libtimedate-perl', 'libyaml-0-2:amd64', 'libmodule-signature-perl', 'libnet-http-perl', 'liburi-perl', 'tm-align', 'perl-modules', 'libirs-export91', 'liblwp-protocol-https-perl', 'libidn11:amd64', 'javascript-common', 'muscle', 'libhtml-tree-perl', 'libswitch-perl', 'isc-dhcp-client', 'libhttp-date-perl', 'python2.7-minimal', 'amap-align', 'iproute2', 'libhogweed2:amd64', 'libparams-util-perl', 'libbio-ruby1.8'] 1m37.1s INFO: Running scripts post_remove 1m37.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_remove_exceptions'] 1m37.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_remove_exceptions'] 1m37.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg', '--purge', 'libnet-ssleay-perl', 'libxml-sax-expat-perl', 'libmime-tools-perl', 'iproute', 'libmailtools-perl', 'isc-dhcp-common', 'libjs-jquery', 'liblog-message-perl', 'lynx-cur', 'libargtable2-0', 'libmodule-build-perl', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'libnettle4:amd64', 'libclass-c3-perl', 'libmro-compat-perl', 'libclass-c3-xs-perl', 'sim4', 'python', 'libio-html-perl', 'libalgorithm-c3-perl', 'libsoftware-license-perl', 'libtext-template-perl', 'libtext-soundex-perl', 'ca-certificates', 'libfile-listing-perl', 'libp11-kit0:amd64', 'libbsd0:amd64', 'libio-stringy-perl', 'libpython2.7-stdlib:amd64', 'libxml-namespacesupport-perl', 'libisc-export95', 'libgnutls26:amd64', 'libcpan-meta-perl', 'liblog-message-simple-perl', 'dialign-tx', 'poa', 'libsoap-lite-perl', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libsub-install-perl', 'hmmer', 'libmagic1:amd64', 'mustang', 'ruby1.9.1', 'libwww-perl', 'libpackage-constants-perl', 'libgomp1:amd64', 'libpod-readme-perl', 'libsub-exporter-perl', 'blast2', 'rubygems-integration', 'libgmp10:amd64', 'libquadmath0:amd64', 'libxml-sax-base-perl', 'libio-sessiondata-perl', 'libhtml-format-perl', 'mafft', 'libossp-uuid-perl', 'libhtml-parser-perl', 'libhttp-message-perl', 'libcrypt-ssleay-perl', 'python2.7', 'libxml-sax-perl', 'libgnutls-deb0-28:amd64', 'libcgi-fast-perl', 'libhtml-form-perl', 'probcons', 'libxml-parser-perl', 'dialign-tx-data', 'python-minimal', 'libclass-inspector-perl', 'libruby2.1:amd64', 'ncbi-data', 'libregexp-common-perl', 'libhtml-tagset-perl', 'libencode-locale-perl', 'libxmlrpc-lite-perl', 't-coffee', 'libpython-stdlib:amd64', 'libdata-section-perl', 'libxml-simple-perl', 'libconvert-binhex-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'mime-support', 'prank', 'libclass-isa-perl', 'libatm1:amd64', 'libhttp-negotiate-perl', 'libterm-ui-perl', 'perl', 'libsqlite3-0:amd64', 'libhttp-daemon-perl', 'libio-socket-ip-perl', 'ruby2.1', 'netbase', 'libpod-latex-perl', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libruby1.9.1', 'libhttp-cookies-perl', 'libfcgi-perl', 'libauthen-sasl-perl', 'libnet-smtp-ssl-perl', 'libmodule-pluggable-perl', 'libtask-weaken-perl', 'ruby', 'ncbi-blast+', 'liblwp-mediatypes-perl', 'clustalw', 'libncbi6:amd64', 'kalign', 'libffi6:amd64', 'libwww-robotrules-perl', 'libisccfg-export90', 'libdns-export100', 'lynx', 'libarchive-extract-perl', 'clustalo', 'rename', 'ifupdown', 'ruby-bio', 'openssl', 'libffi5:amd64', 'libpython2.7-minimal:amd64', 'file', 'proda', 'libgfortran3:amd64', 'libxtables10', 'libdata-optlist-perl', 'libsocket-perl', 'libtimedate-perl', 'libyaml-0-2:amd64', 'libmodule-signature-perl', 'libnet-http-perl', 'liburi-perl', 'tm-align', 'perl-modules', 'libirs-export91', 'liblwp-protocol-https-perl', 'libidn11:amd64', 'javascript-common', 'muscle', 'libhtml-tree-perl', 'libswitch-perl', 'isc-dhcp-client', 'libhttp-date-perl', 'python2.7-minimal', 'amap-align', 'iproute2', 'libhogweed2:amd64', 'libparams-util-perl'] 1m37.8s DUMP: dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed (Reading database ... 7706 files and directories currently installed.) Removing iproute (1:3.16.0-2) ... Purging configuration files for iproute (1:3.16.0-2) ... dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove isc-dhcp-common which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove liblog-message-perl which isn't installed Removing lynx-cur (2.8.9dev1-2+deb8u1) ... Purging configuration files for lynx-cur (2.8.9dev1-2+deb8u1) ... Removing libargtable2-0 (12-1.1) ... Purging configuration files for libargtable2-0 (12-1.1) ... Removing libmodule-build-perl (0.421000-2+deb8u1) ... Purging configuration files for libmodule-build-perl (0.421000-2+deb8u1) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Purging configuration files for libgdbm3:amd64 (1.8.3-13.1) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libnettle4:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libclass-c3-perl which isn't installed dpkg: warning: ignoring request to remove libmro-compat-perl which isn't installed dpkg: warning: ignoring request to remove libclass-c3-xs-perl which isn't installed dpkg: warning: ignoring request to remove sim4 which isn't installed Removing python (2.7.9-1) ... Purging configuration files for python (2.7.9-1) ... dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-c3-perl which isn't installed dpkg: warning: ignoring request to remove libsoftware-license-perl which isn't installed dpkg: warning: ignoring request to remove libtext-template-perl which isn't installed dpkg: warning: ignoring request to remove libtext-soundex-perl which isn't installed Removing ca-certificates (20141019+deb8u3) ... Purging configuration files for ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed Removing libp11-kit0:amd64 (0.20.7-1) ... Purging configuration files for libp11-kit0:amd64 (0.20.7-1) ... Removing libbsd0:amd64 (0.7.0-2) ... Purging configuration files for libbsd0:amd64 (0.7.0-2) ... dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Removing libgnutls26:amd64 (2.12.20-8+deb7u5) ... Purging configuration files for libgnutls26:amd64 (2.12.20-8+deb7u5) ... dpkg: warning: ignoring request to remove libcpan-meta-perl which isn't installed dpkg: warning: ignoring request to remove liblog-message-simple-perl which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed Removing libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Purging configuration files for libgcrypt11:amd64 (1.5.0-5+deb7u4) ... dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libsub-install-perl which isn't installed dpkg: warning: ignoring request to remove hmmer which isn't installed Removing libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Purging configuration files for libmagic1:amd64 (1:5.22+15-2+deb8u4) ... dpkg: warning: ignoring request to remove mustang which isn't installed Removing ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Purging configuration files for ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-constants-perl which isn't installed Removing libgomp1:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libgomp1:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove libpod-readme-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-perl which isn't installed Removing blast2 (1:2.2.26.20120620-8) ... Purging configuration files for blast2 (1:2.2.26.20120620-8) ... dpkg: warning: ignoring request to remove rubygems-integration which isn't installed Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Purging configuration files for libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed dpkg: warning: ignoring request to remove libio-sessiondata-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove libossp-uuid-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-ssleay-perl which isn't installed Removing python2.7 (2.7.9-2+deb8u1) ... Purging configuration files for python2.7 (2.7.9-2+deb8u1) ... Removing libxml-sax-perl (0.99+dfsg-2) ... Purging configuration files for libxml-sax-perl (0.99+dfsg-2) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Purging configuration files for libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Purging configuration files for libruby2.1:amd64 (2.1.5-2+deb8u3) ... Removing ncbi-data (6.1.20120620-8) ... Purging configuration files for ncbi-data (6.1.20120620-8) ... dpkg: warning: ignoring request to remove libregexp-common-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libxmlrpc-lite-perl which isn't installed dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed dpkg: warning: ignoring request to remove libdata-section-perl which isn't installed dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed Removing libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Purging configuration files for libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Removing libtasn1-3:amd64 (2.13-2+deb7u2) ... Purging configuration files for libtasn1-3:amd64 (2.13-2+deb7u2) ... dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed Removing mime-support (3.58) ... Purging configuration files for mime-support (3.58) ... dpkg: warning: ignoring request to remove prank which isn't installed dpkg: warning: ignoring request to remove libclass-isa-perl which isn't installed Removing libatm1:amd64 (1:2.5.1-1.5) ... Purging configuration files for libatm1:amd64 (1:2.5.1-1.5) ... dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libterm-ui-perl which isn't installed dpkg: warning: ignoring request to remove perl which isn't installed Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Purging configuration files for libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ip-perl which isn't installed dpkg: warning: ignoring request to remove ruby2.1 which isn't installed Removing netbase (5.3) ... Purging configuration files for netbase (5.3) ... Removing libpod-latex-perl (0.61-1) ... Purging configuration files for libpod-latex-perl (0.61-1) ... Removing libdb5.1:amd64 (5.1.29-5) ... Purging configuration files for libdb5.1:amd64 (5.1.29-5) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Purging configuration files for libtasn1-6:amd64 (4.2-3+deb8u3) ... Removing libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Purging configuration files for libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-pluggable-perl which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed Removing clustalw (2.1+lgpl-4) ... Purging configuration files for clustalw (2.1+lgpl-4) ... Removing libncbi6:amd64 (6.1.20120620-8) ... Purging configuration files for libncbi6:amd64 (6.1.20120620-8) ... Removing kalign (1:2.03+20110620-2) ... Purging configuration files for kalign (1:2.03+20110620-2) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove lynx which isn't installed dpkg: warning: ignoring request to remove libarchive-extract-perl which isn't installed dpkg: warning: ignoring request to remove clustalo which isn't installed dpkg: warning: ignoring request to remove rename which isn't installed Removing ifupdown (0.7.53.1) ... Purging configuration files for ifupdown (0.7.53.1) ... dpkg: warning: ignoring request to remove ruby-bio which isn't installed Removing openssl (1.0.1t-1+deb8u8) ... Purging configuration files for openssl (1.0.1t-1+deb8u8) ... Removing libffi5:amd64 (3.0.10-3) ... Purging configuration files for libffi5:amd64 (3.0.10-3) ... Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Purging configuration files for libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove proda which isn't installed Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing libxtables10 (1.4.21-2+b1) ... Purging configuration files for libxtables10 (1.4.21-2+b1) ... dpkg: warning: ignoring request to remove libdata-optlist-perl which isn't installed dpkg: warning: ignoring request to remove libsocket-perl which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed Removing libyaml-0-2:amd64 (0.1.6-3) ... Purging configuration files for libyaml-0-2:amd64 (0.1.6-3) ... dpkg: warning: ignoring request to remove libmodule-signature-perl which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Removing perl-modules (5.20.2-3+deb8u11) ... Purging configuration files for perl-modules (5.20.2-3+deb8u11) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed Removing libidn11:amd64 (1.29-1+deb8u2) ... Purging configuration files for libidn11:amd64 (1.29-1+deb8u2) ... Removing javascript-common (11) ... Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libswitch-perl which isn't installed Removing isc-dhcp-client (4.3.1-6+deb8u3) ... Purging configuration files for isc-dhcp-client (4.3.1-6+deb8u3) ... dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed Removing python2.7-minimal (2.7.9-2+deb8u1) ... Purging configuration files for python2.7-minimal (2.7.9-2+deb8u1) ... dpkg: warning: ignoring request to remove amap-align which isn't installed Removing iproute2 (3.16.0-2) ... Purging configuration files for iproute2 (3.16.0-2) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libparams-util-perl which isn't installed 1m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg', '--purge', 'libnet-ssleay-perl', 'libxml-sax-expat-perl', 'libmime-tools-perl', 'iproute', 'libmailtools-perl', 'isc-dhcp-common', 'libjs-jquery', 'liblog-message-perl', 'lynx-cur', 'libargtable2-0', 'libmodule-build-perl', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'libnettle4:amd64', 'libclass-c3-perl', 'libmro-compat-perl', 'libclass-c3-xs-perl', 'sim4', 'python', 'libio-html-perl', 'libalgorithm-c3-perl', 'libsoftware-license-perl', 'libtext-template-perl', 'libtext-soundex-perl', 'ca-certificates', 'libfile-listing-perl', 'libp11-kit0:amd64', 'libbsd0:amd64', 'libio-stringy-perl', 'libpython2.7-stdlib:amd64', 'libxml-namespacesupport-perl', 'libisc-export95', 'libgnutls26:amd64', 'libcpan-meta-perl', 'liblog-message-simple-perl', 'dialign-tx', 'poa', 'libsoap-lite-perl', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libsub-install-perl', 'hmmer', 'libmagic1:amd64', 'mustang', 'ruby1.9.1', 'libwww-perl', 'libpackage-constants-perl', 'libgomp1:amd64', 'libpod-readme-perl', 'libsub-exporter-perl', 'blast2', 'rubygems-integration', 'libgmp10:amd64', 'libquadmath0:amd64', 'libxml-sax-base-perl', 'libio-sessiondata-perl', 'libhtml-format-perl', 'mafft', 'libossp-uuid-perl', 'libhtml-parser-perl', 'libhttp-message-perl', 'libcrypt-ssleay-perl', 'python2.7', 'libxml-sax-perl', 'libgnutls-deb0-28:amd64', 'libcgi-fast-perl', 'libhtml-form-perl', 'probcons', 'libxml-parser-perl', 'dialign-tx-data', 'python-minimal', 'libclass-inspector-perl', 'libruby2.1:amd64', 'ncbi-data', 'libregexp-common-perl', 'libhtml-tagset-perl', 'libencode-locale-perl', 'libxmlrpc-lite-perl', 't-coffee', 'libpython-stdlib:amd64', 'libdata-section-perl', 'libxml-simple-perl', 'libconvert-binhex-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'mime-support', 'prank', 'libclass-isa-perl', 'libatm1:amd64', 'libhttp-negotiate-perl', 'libterm-ui-perl', 'perl', 'libsqlite3-0:amd64', 'libhttp-daemon-perl', 'libio-socket-ip-perl', 'ruby2.1', 'netbase', 'libpod-latex-perl', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libruby1.9.1', 'libhttp-cookies-perl', 'libfcgi-perl', 'libauthen-sasl-perl', 'libnet-smtp-ssl-perl', 'libmodule-pluggable-perl', 'libtask-weaken-perl', 'ruby', 'ncbi-blast+', 'liblwp-mediatypes-perl', 'clustalw', 'libncbi6:amd64', 'kalign', 'libffi6:amd64', 'libwww-robotrules-perl', 'libisccfg-export90', 'libdns-export100', 'lynx', 'libarchive-extract-perl', 'clustalo', 'rename', 'ifupdown', 'ruby-bio', 'openssl', 'libffi5:amd64', 'libpython2.7-minimal:amd64', 'file', 'proda', 'libgfortran3:amd64', 'libxtables10', 'libdata-optlist-perl', 'libsocket-perl', 'libtimedate-perl', 'libyaml-0-2:amd64', 'libmodule-signature-perl', 'libnet-http-perl', 'liburi-perl', 'tm-align', 'perl-modules', 'libirs-export91', 'liblwp-protocol-https-perl', 'libidn11:amd64', 'javascript-common', 'muscle', 'libhtml-tree-perl', 'libswitch-perl', 'isc-dhcp-client', 'libhttp-date-perl', 'python2.7-minimal', 'amap-align', 'iproute2', 'libhogweed2:amd64', 'libparams-util-perl'] 1m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg', '--purge', 'libbio-ruby1.8'] 1m37.8s DUMP: dpkg: warning: ignoring request to remove libbio-ruby1.8 which isn't installed 1m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg', '--purge', 'libbio-ruby1.8'] 1m37.8s INFO: Running scripts post_purge 1m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_purge_exceptions'] 1m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_purge_exceptions'] 1m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg', '--purge', '--pending'] 1m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg', '--purge', '--pending'] 1m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg', '--remove', '--pending'] 1m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg', '--remove', '--pending'] 1m37.8s INFO: Running scripts post_test 1m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_test_exceptions'] 1m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'tmp/scripts/post_test_exceptions'] 1m37.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 1m38.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 1m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg-divert', '--list'] 1m38.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'dpkg-divert', '--list'] 1m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', 'clean'] 1m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUtippM', 'apt-get', 'clean'] 1m38.4s DEBUG: Recording chroot state 1m39.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpUtippM/run/shm'] 1m39.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpUtippM/run/shm'] 1m39.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/console'] 1m39.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/console'] 1m39.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/ptmx'] 1m39.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/ptmx'] 1m39.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/pts'] 1m39.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpUtippM/dev/pts'] 1m39.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpUtippM/proc'] 1m39.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpUtippM/proc'] 1m39.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 1m39.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpUtippM'] 1m39.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpUtippM 1m39.8s INFO: PASS: Upgrading between Debian distributions. 1m39.8s INFO: PASS: All tests. 1m39.8s INFO: piuparts run ends. ret=0 End: 2019-07-02 19:52:29 UTC