Start: 2018-09-15 15:01:23 UTC [wheezy] Package: libbio-samtools-perl Version: 1.33-1 Installed-Size: 520 Maintainer: Debian Perl Group Architecture: amd64 Depends: perl (>= 5.14.2-6), perlapi-5.14.2, libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg), libbio-perl-perl (>= 1.6.901) Enhances: gbrowse, samtools Description: Perl interface to SamTools library for DNA sequencing Homepage: http://search.cpan.org/dist/Bio-SamTools/ Description-md5: 73b654c3e7ee8120b5c9b0a3c60da326 Tag: devel::lang:perl, devel::library, field::biology, implemented-in::c, implemented-in::perl, network::client, protocol::ftp, protocol::http, works-with::biological-sequence Section: perl Priority: optional Filename: pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.33-1_amd64.deb Size: 208410 MD5sum: d64f08bf376fd544649ee54dc5de69fc SHA1: c2af5da434a3f4d38b952636721e10ebb33e17c8 SHA256: 4d08ba181d2d3eeabc80d3c129eb6dc6757251288b2b3ea52cf0bb4762def094 [jessie] Package: libbio-samtools-perl Source: libbio-samtools-perl (1.39-1) Version: 1.39-1+b1 Installed-Size: 588 Maintainer: Debian Perl Group Architecture: amd64 Depends: perl (>= 5.20.0-4), perlapi-5.20.0, libc6 (>= 2.14), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Description: Perl interface to SamTools library for DNA sequencing Homepage: https://metacpan.org/release/Bio-SamTools/ Description-md5: 73b654c3e7ee8120b5c9b0a3c60da326 Tag: devel::lang:perl, devel::library, implemented-in::c, implemented-in::perl, role::shared-lib Section: perl Priority: optional Filename: pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.39-1+b1_amd64.deb Size: 195056 MD5sum: 40b655589c2b7a4a3fe00e92b5deea8b SHA1: e6575390e8f3945548462f43a8873df275591482 SHA256: 2a9ffa5bc53086518f901d1402695efc26dd0e8af59eda87b5c2c22e44639c96 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --scriptsdir /etc/piuparts/scripts-jessie --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B reference-chroot-metadata.dat --apt libbio-samtools-perl=1.39-1+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.92~201809130951~0.91-23-g805ff154 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --scriptsdir /etc/piuparts/scripts-jessie --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B reference-chroot-metadata.dat --apt libbio-samtools-perl=1.39-1+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-8-amd64 #1 SMP Debian 4.9.110-3+deb9u4 (2018-08-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp8VwU1z 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp8VwU1z 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/run/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/run/shm'] 0m1.7s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp8VwU1z/tmp/scripts/ 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmp8VwU1z/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', 'update'] 0m3.7s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Reading package lists... 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', 'update'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', '-yf', 'dist-upgrade'] 0m4.0s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', '-yf', 'dist-upgrade'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s INFO: Running scripts post_setup 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m5.9s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: ucf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 70.8 kB of archives. After this operation, 236 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.8 kB in 0s (5780 kB/s) Selecting previously unselected package ucf. (Reading database ... 6639 files and directories currently installed.) Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up ucf (3.0025+nmu3) ... 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_minimize'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_minimize'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_zz_backports'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_setup_zz_backports'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.0s DUMP: install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.0s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m6.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 0m7.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 0m7.2s INFO: Running scripts is_testable 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/is_testable_uninstallable'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/is_testable_uninstallable'] 0m7.2s INFO: Running scripts pre_test 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_test_root_password'] 0m7.2s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_test_root_password'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'show', '--no-all-versions', 'libbio-samtools-perl'] 0m7.2s DUMP: Package: libbio-samtools-perl Version: 1.33-1 Installed-Size: 520 Maintainer: Debian Perl Group Architecture: amd64 Depends: perl (>= 5.14.2-6), perlapi-5.14.2, libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg), libbio-perl-perl (>= 1.6.901) Enhances: gbrowse, samtools Description-en: Perl interface to SamTools library for DNA sequencing Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application. Homepage: http://search.cpan.org/dist/Bio-SamTools/ Description-md5: 73b654c3e7ee8120b5c9b0a3c60da326 Tag: devel::lang:perl, devel::library, field::biology, implemented-in::c, implemented-in::perl, network::client, protocol::ftp, protocol::http, works-with::biological-sequence Section: perl Priority: optional Filename: pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.33-1_amd64.deb Size: 208410 MD5sum: d64f08bf376fd544649ee54dc5de69fc SHA1: c2af5da434a3f4d38b952636721e10ebb33e17c8 SHA256: 4d08ba181d2d3eeabc80d3c129eb6dc6757251288b2b3ea52cf0bb4762def094 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'show', '--no-all-versions', 'libbio-samtools-perl'] 0m7.2s INFO: apt-cache knows about the following packages: libbio-samtools-perl 0m7.2s INFO: Running scripts pre_install 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_exceptions'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_exceptions'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'policy'] 0m7.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'policy'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'policy', 'libbio-samtools-perl'] 0m7.3s DUMP: libbio-samtools-perl: Installed: (none) Candidate: 1.33-1 Version table: 1.33-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'policy', 'libbio-samtools-perl'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', '-y', 'install', 'libbio-samtools-perl'] 0m48.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser amap-align apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalw dbus dialign emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-droid fonts-liberation ghostscript graphviz gsfonts hmmer ifupdown infernal iproute kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarray-compare-perl libatm1 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcap2 libcarp-clan-perl libcdt4 libcgraph5 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-ssleay-perl libcups2 libcupsimage2 libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-globaldestruction-perl libdevel-partialdump-perl libdevel-symdump-perl libencode-locale-perl liberror-perl libeval-closure-perl libexpat1 libfcgi-perl libffi5 libfile-listing-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgcrypt11 libgd-gd2-perl libgd2-xpm libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgnutls26 libgpg-error0 libgpm2 libgraph-perl libgraph4 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgvc5 libgvpr1 libheap-perl libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libijs-0.35 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg8 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblist-moreutils-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libmysqlclient18 libnamespace-clean-perl libncbi6 libncursesw5 libnet-http-perl libnet-ssleay-perl libole-storage-lite-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libpcre3 libperl5.14 libpixman-1-0 libpng12-0 libpostscript-perl libpq5 libprocps0 libquadmath0 libruby1.9.1 libsasl2-2 libsasl2-modules libset-scalar-perl libsm6 libsoap-lite-perl libsocket-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libsub-exporter-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libswitch-perl libsystemd-login0 libtask-weaken-perl libtasn1-3 libthai-data libthai0 libtie-ixhash-perl libtiff4 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libunicode-map-perl liburi-perl libvariable-magic-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-syck-perl lynx lynx-cur mafft maq mime-support muscle mysql-common ncbi-data netbase openssl perl perl-doc perl-modules perl-tk phyml poppler-data primer3 probcons procps psmisc ruby ruby1.9.1 samtools sgml-base shared-mime-info sim4 ssl-cert t-coffee tigr-glimmer tm-align ttf-dejavu-core ttf-liberation wise x11-common xml-core Suggested packages: www-browser apache2-doc apache2-suexec apache2-suexec-custom filo groff-base gmap paml molphy phylip ensembl libvibrant6a ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 bowtie-examples clustalx seaview dbus-x11 emboss-doc emboss-test embassy ghostscript-cups ghostscript-x hpijs graphviz-doc hmmer-doc isc-dhcp-client dhcp-client ppp rdnssd net-tools iproute-doc libmath-random-perl libxml-sax-expatxs-perl cups-common rng-tools libgd-tools gpm krb5-doc krb5-user libdata-dump-perl libjasper-runtime liblcms2-utils libmime-base64-perl uuid ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp libscalar-number-perl libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal libmime-lite-perl libnet-jabber-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl libterm-readline-gnu-perl libterm-readline-perl-perl make man-browser groff libpod-plainer-perl poppler-utils fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-unfonts-core ncbi-epcr probcons-extra ri ruby-dev ruby1.9.1-examples ri1.9.1 ruby1.9.1-dev ruby-switch python sgml-base-doc openssl-blacklist boxshade t-coffee-doc t-coffee-examples dialign-tx poa proda pymol rasmol wise-doc debhelper Recommended packages: libstorable-perl The following NEW packages will be installed: adduser amap-align apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalw dbus dialign emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-droid fonts-liberation ghostscript graphviz gsfonts hmmer ifupdown infernal iproute kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarray-compare-perl libatm1 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbio-samtools-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcap2 libcarp-clan-perl libcdt4 libcgraph5 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-ssleay-perl libcups2 libcupsimage2 libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-globaldestruction-perl libdevel-partialdump-perl libdevel-symdump-perl libencode-locale-perl liberror-perl libeval-closure-perl libexpat1 libfcgi-perl libffi5 libfile-listing-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgcrypt11 libgd-gd2-perl libgd2-xpm libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgnutls26 libgpg-error0 libgpm2 libgraph-perl libgraph4 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgvc5 libgvpr1 libheap-perl libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libijs-0.35 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg8 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblist-moreutils-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libmysqlclient18 libnamespace-clean-perl libncbi6 libncursesw5 libnet-http-perl libnet-ssleay-perl libole-storage-lite-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libpcre3 libperl5.14 libpixman-1-0 libpng12-0 libpostscript-perl libpq5 libprocps0 libquadmath0 libruby1.9.1 libsasl2-2 libsasl2-modules libset-scalar-perl libsm6 libsoap-lite-perl libsocket-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libsub-exporter-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libswitch-perl libsystemd-login0 libtask-weaken-perl libtasn1-3 libthai-data libthai0 libtie-ixhash-perl libtiff4 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libunicode-map-perl liburi-perl libvariable-magic-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-syck-perl lynx lynx-cur mafft maq mime-support muscle mysql-common ncbi-data netbase openssl perl perl-doc perl-modules perl-tk phyml poppler-data primer3 probcons procps psmisc ruby ruby1.9.1 samtools sgml-base shared-mime-info sim4 ssl-cert t-coffee tigr-glimmer tm-align ttf-dejavu-core ttf-liberation wise x11-common xml-core 0 upgraded, 305 newly installed, 0 to remove and 0 not upgraded. Need to get 165 MB of archives. After this operation, 688 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main iproute amd64 20120521-3+b3 [459 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main ifupdown amd64 0.7.8 [64.9 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libgdbm3 amd64 1.8.3-11 [46.9 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libncursesw5 amd64 5.9-10 [141 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main libprocps0 amd64 1:3.3.3-3 [58.1 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main libssl1.0.0 amd64 1.0.1e-2+deb7u20 [1263 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main libcap2 amd64 1:2.22-1.2 [13.6 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libgcrypt11 amd64 1.5.0-5+deb7u4 [301 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libtasn1-3 amd64 2.13-2+deb7u2 [67.8 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libgnutls26 amd64 2.12.20-8+deb7u5 [620 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libgpm2 amd64 1.20.4-6 [35.8 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main libkeyutils1 amd64 1.5.5-3+deb7u1 [8664 B] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main libkrb5support0 amd64 1.10.1+dfsg-5+deb7u7 [50.5 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main libk5crypto3 amd64 1.10.1+dfsg-5+deb7u7 [113 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main libkrb5-3 amd64 1.10.1+dfsg-5+deb7u7 [394 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main libgssapi-krb5-2 amd64 1.10.1+dfsg-5+deb7u7 [150 kB] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main libidn11 amd64 1.25-2 [178 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main libsasl2-2 amd64 2.1.25.dfsg1-6+deb7u1 [120 kB] Get:21 http://mirror-ubc.debian.org/debian/ wheezy/main libldap-2.4-2 amd64 2.4.31-2+deb7u2 [243 kB] Get:22 http://mirror-ubc.debian.org/debian/ wheezy/main libmagic1 amd64 5.11-2+deb7u8 [205 kB] Get:23 http://mirror-ubc.debian.org/debian/ wheezy/main libpcre3 amd64 1:8.30-5 [242 kB] Get:24 http://mirror-ubc.debian.org/debian/ wheezy/main libsqlite3-0 amd64 3.7.13-1+deb7u2 [454 kB] Get:25 http://mirror-ubc.debian.org/debian/ wheezy/main libxml2 amd64 2.8.0+dfsg1-7+wheezy5 [906 kB] Get:26 http://mirror-ubc.debian.org/debian/ wheezy/main bedtools amd64 2.16.1-1 [434 kB] Get:27 http://mirror-ubc.debian.org/debian/ wheezy/main libatm1 amd64 1:2.5.1-1.5 [73.3 kB] Get:28 http://mirror-ubc.debian.org/debian/ wheezy/main libavahi-common-data amd64 0.6.31-2 [135 kB] Get:29 http://mirror-ubc.debian.org/debian/ wheezy/main libavahi-common3 amd64 0.6.31-2 [54.6 kB] Get:30 http://mirror-ubc.debian.org/debian/ wheezy/main libdbus-1-3 amd64 1.6.8-1+deb7u6 [174 kB] Get:31 http://mirror-ubc.debian.org/debian/ wheezy/main libavahi-client3 amd64 0.6.31-2 [59.5 kB] Get:32 http://mirror-ubc.debian.org/debian/ wheezy/main libbsd0 amd64 0.4.2-1 [59.3 kB] Get:33 http://mirror-ubc.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:34 http://mirror-ubc.debian.org/debian/ wheezy/main libfreetype6 amd64 2.4.9-1.1+deb7u3 [452 kB] Get:35 http://mirror-ubc.debian.org/debian/ wheezy/main ttf-dejavu-core all 2.33-3 [1021 kB] Get:36 http://mirror-ubc.debian.org/debian/ wheezy/main fontconfig-config all 2.9.0-7.1 [233 kB] Get:37 http://mirror-ubc.debian.org/debian/ wheezy/main libfontconfig1 amd64 2.9.0-7.1 [300 kB] Get:38 http://mirror-ubc.debian.org/debian/ wheezy/main libpixman-1-0 amd64 0.26.0-4+deb7u2 [427 kB] Get:39 http://mirror-ubc.debian.org/debian/ wheezy/main libpng12-0 amd64 1.2.49-1+deb7u2 [191 kB] Get:40 http://mirror-ubc.debian.org/debian/ wheezy/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:41 http://mirror-ubc.debian.org/debian/ wheezy/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:42 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb1 amd64 1.8.1-2+deb7u1 [50.2 kB] Get:43 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-data all 2:1.5.0-1+deb7u2 [194 kB] Get:44 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-6 amd64 2:1.5.0-1+deb7u2 [901 kB] Get:45 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb-render0 amd64 1.8.1-2+deb7u1 [18.6 kB] Get:46 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb-shm0 amd64 1.8.1-2+deb7u1 [10.4 kB] Get:47 http://mirror-ubc.debian.org/debian/ wheezy/main libxrender1 amd64 1:0.9.7-1+deb7u2 [32.9 kB] Get:48 http://mirror-ubc.debian.org/debian/ wheezy/main libcairo2 amd64 1.12.2-3 [912 kB] Get:49 http://mirror-ubc.debian.org/debian/ wheezy/main libcups2 amd64 1.5.3-5+deb7u6 [256 kB] Get:50 http://mirror-ubc.debian.org/debian/ wheezy/main libjpeg8 amd64 8d-1+deb7u1 [138 kB] Get:51 http://mirror-ubc.debian.org/debian/ wheezy/main libjbig0 amd64 2.0-2+deb7u1 [32.6 kB] Get:52 http://mirror-ubc.debian.org/debian/ wheezy/main libtiff4 amd64 3.9.6-11 [202 kB] Get:53 http://mirror-ubc.debian.org/debian/ wheezy/main libcupsimage2 amd64 1.5.3-5+deb7u6 [138 kB] Get:54 http://mirror-ubc.debian.org/debian/ wheezy/main libdatrie1 amd64 0.2.5-3 [28.6 kB] Get:55 http://mirror-ubc.debian.org/debian/ wheezy/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:56 http://mirror-ubc.debian.org/debian/ wheezy/main libxpm4 amd64 1:3.5.10-1 [49.4 kB] Get:57 http://mirror-ubc.debian.org/debian/ wheezy/main libgd2-xpm amd64 2.0.36~rc1~dfsg-6.1+deb7u2 [234 kB] Get:58 http://mirror-ubc.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:59 http://mirror-ubc.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:60 http://mirror-ubc.debian.org/debian/ wheezy/main libglib2.0-0 amd64 2.33.12+really2.32.4-5 [1838 kB] Get:61 http://mirror-ubc.debian.org/debian/ wheezy/main x11-common all 1:7.7+3~deb7u1 [284 kB] Get:62 http://mirror-ubc.debian.org/debian/ wheezy/main libice6 amd64 2:1.0.8-2 [63.1 kB] Get:63 http://mirror-ubc.debian.org/debian/ wheezy/main libjasper1 amd64 1.900.1-13+deb7u4 [160 kB] Get:64 http://mirror-ubc.debian.org/debian/ wheezy/main liblcms2-2 amd64 2.2+git20110628-2.2+deb7u1 [144 kB] Get:65 http://mirror-ubc.debian.org/debian/ wheezy/main libltdl7 amd64 2.4.2-1.1 [352 kB] Get:66 http://mirror-ubc.debian.org/debian/ wheezy/main mysql-common all 5.5.47-0+deb7u1 [81.9 kB] Get:67 http://mirror-ubc.debian.org/debian/ wheezy/main libmysqlclient18 amd64 5.5.47-0+deb7u1 [686 kB] Get:68 http://mirror-ubc.debian.org/debian/ wheezy/main ncbi-data all 6.1.20120620-2 [5893 kB] Get:69 http://mirror-ubc.debian.org/debian/ wheezy/main libncbi6 amd64 6.1.20120620-2 [4887 kB] Get:70 http://mirror-ubc.debian.org/debian/ wheezy/main libthai-data all 0.1.18-2 [154 kB] Get:71 http://mirror-ubc.debian.org/debian/ wheezy/main libthai0 amd64 0.1.18-2 [42.3 kB] Get:72 http://mirror-ubc.debian.org/debian/ wheezy/main libxft2 amd64 2.3.1-1 [61.0 kB] Get:73 http://mirror-ubc.debian.org/debian/ wheezy/main fontconfig amd64 2.9.0-7.1 [348 kB] Get:74 http://mirror-ubc.debian.org/debian/ wheezy/main libpango1.0-0 amd64 1.30.0-1 [461 kB] Get:75 http://mirror-ubc.debian.org/debian/ wheezy/main libpaper1 amd64 1.1.24+nmu2 [22.0 kB] Get:76 http://mirror-ubc.debian.org/debian/ wheezy/main libsm6 amd64 2:1.2.1-2 [34.2 kB] Get:77 http://mirror-ubc.debian.org/debian/ wheezy/main libxext6 amd64 2:1.3.1-2+deb7u1 [54.8 kB] Get:78 http://mirror-ubc.debian.org/debian/ wheezy/main libxt6 amd64 1:1.1.3-1+deb7u1 [212 kB] Get:79 http://mirror-ubc.debian.org/debian/ wheezy/main libxmu6 amd64 2:1.1.1-1 [66.6 kB] Get:80 http://mirror-ubc.debian.org/debian/ wheezy/main libxaw7 amd64 2:1.0.10-2 [226 kB] Get:81 http://mirror-ubc.debian.org/debian/ wheezy/main libxslt1.1 amd64 1.1.26-14.1 [254 kB] Get:82 http://mirror-ubc.debian.org/debian/ wheezy/main libyaml-0-2 amd64 0.1.4-2+deb7u5 [58.3 kB] Get:83 http://mirror-ubc.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:84 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:85 http://mirror-ubc.debian.org/debian/ wheezy/main perl-modules all 5.14.2-21+deb7u3 [3444 kB] Get:86 http://mirror-ubc.debian.org/debian/ wheezy/main perl amd64 5.14.2-21+deb7u3 [4429 kB] Get:87 http://mirror-ubc.debian.org/debian/ wheezy/main libyaml-syck-perl amd64 1.20-1 [75.5 kB] Get:88 http://mirror-ubc.debian.org/debian/ wheezy/main mafft amd64 6.864-1 [799 kB] Get:89 http://mirror-ubc.debian.org/debian/ wheezy/main poppler-data all 0.4.5-10 [1479 kB] Get:90 http://mirror-ubc.debian.org/debian/ wheezy/main sgml-base all 1.26+nmu4 [14.6 kB] Get:91 http://mirror-ubc.debian.org/debian/ wheezy/main wise amd64 2.4.1-10 [1075 kB] Get:92 http://mirror-ubc.debian.org/debian/ wheezy/main libsystemd-login0 amd64 44-11+deb7u4 [29.5 kB] Get:93 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:94 http://mirror-ubc.debian.org/debian/ wheezy/main netbase all 5.0 [20.1 kB] Get:95 http://mirror-ubc.debian.org/debian/ wheezy/main procps amd64 1:3.3.3-3 [252 kB] Get:96 http://mirror-ubc.debian.org/debian/ wheezy/main file amd64 5.11-2+deb7u8 [53.4 kB] Get:97 http://mirror-ubc.debian.org/debian/ wheezy/main krb5-locales all 1.10.1+dfsg-5+deb7u7 [1504 kB] Get:98 http://mirror-ubc.debian.org/debian/ wheezy/main mime-support all 3.52-1+deb7u1 [35.5 kB] Get:99 http://mirror-ubc.debian.org/debian/ wheezy/main amap-align amd64 2.2-3 [144 kB] Get:100 http://mirror-ubc.debian.org/debian/ wheezy/main libapr1 amd64 1.4.6-3+deb7u1 [106 kB] Get:101 http://mirror-ubc.debian.org/debian/ wheezy/main libaprutil1 amd64 1.4.1-3 [89.8 kB] Get:102 http://mirror-ubc.debian.org/debian/ wheezy/main libaprutil1-dbd-sqlite3 amd64 1.4.1-3 [19.0 kB] Get:103 http://mirror-ubc.debian.org/debian/ wheezy/main libaprutil1-ldap amd64 1.4.1-3 [16.6 kB] Get:104 http://mirror-ubc.debian.org/debian/ wheezy/main apache2.2-bin amd64 2.2.22-13+deb7u6 [793 kB] Get:105 http://mirror-ubc.debian.org/debian/ wheezy/main apache2-utils amd64 2.2.22-13+deb7u6 [164 kB] Get:106 http://mirror-ubc.debian.org/debian/ wheezy/main apache2.2-common amd64 2.2.22-13+deb7u6 [294 kB] Get:107 http://mirror-ubc.debian.org/debian/ wheezy/main apache2-mpm-worker amd64 2.2.22-13+deb7u6 [2236 B] Get:108 http://mirror-ubc.debian.org/debian/ wheezy/main apache2 amd64 2.2.22-13+deb7u6 [1438 B] Get:109 http://mirror-ubc.debian.org/debian/ wheezy/main libio-string-perl all 1.08-2 [12.0 kB] Get:110 http://mirror-ubc.debian.org/debian/ wheezy/main libdata-stag-perl all 0.11-2 [509 kB] Get:111 http://mirror-ubc.debian.org/debian/ wheezy/main libbio-perl-perl all 1.6.901-3 [6143 kB] Get:112 http://mirror-ubc.debian.org/debian/ wheezy/main bioperl all 1.6.901-3 [467 kB] Get:113 http://mirror-ubc.debian.org/debian/ wheezy/main libbio-perl-run-perl all 1.6.9-1 [883 kB] Get:114 http://mirror-ubc.debian.org/debian/ wheezy/main bioperl-run all 1.6.9-1 [46.3 kB] Get:115 http://mirror-ubc.debian.org/debian/ wheezy/main blast2 amd64 1:2.2.26.20120620-2 [682 kB] Get:116 http://mirror-ubc.debian.org/debian/ wheezy/main bwa amd64 0.6.2-1 [156 kB] Get:117 http://mirror-ubc.debian.org/debian/ wheezy/main openssl amd64 1.0.1e-2+deb7u20 [702 kB] Get:118 http://mirror-ubc.debian.org/debian/ wheezy/main ca-certificates all 20130119+deb7u1 [210 kB] Get:119 http://mirror-ubc.debian.org/debian/ wheezy/main clustalw amd64 2.1+lgpl-2 [346 kB] Get:120 http://mirror-ubc.debian.org/debian/ wheezy/main dbus amd64 1.6.8-1+deb7u6 [404 kB] Get:121 http://mirror-ubc.debian.org/debian/ wheezy/main dialign amd64 2.2.1-5 [205 kB] Get:122 http://mirror-ubc.debian.org/debian/ wheezy/main libhpdf-2.2.1 amd64 2.2.1-1 [504 kB] Get:123 http://mirror-ubc.debian.org/debian/ wheezy/main libpq5 amd64 9.1.21-0+deb7u1 [140 kB] Get:124 http://mirror-ubc.debian.org/debian/ wheezy/main emboss-lib amd64 6.4.0-2 [2823 kB] Get:125 http://mirror-ubc.debian.org/debian/ wheezy/main emboss-data all 6.4.0-2 [39.0 MB] Get:126 http://mirror-ubc.debian.org/debian/ wheezy/main emboss amd64 6.4.0-2 [1009 kB] Get:127 http://mirror-ubc.debian.org/debian/ wheezy/main exonerate amd64 2.2.0-6 [3053 kB] Get:128 http://mirror-ubc.debian.org/debian/ wheezy/main fonts-droid all 20111207+git-1 [4312 kB] Get:129 http://mirror-ubc.debian.org/debian/ wheezy/main fonts-liberation all 1.07.2-6 [1323 kB] Get:130 http://mirror-ubc.debian.org/debian/ wheezy/main libijs-0.35 amd64 0.35-8 [20.4 kB] Get:131 http://mirror-ubc.debian.org/debian/ wheezy/main libjbig2dec0 amd64 0.11+20120125-1 [51.8 kB] Get:132 http://mirror-ubc.debian.org/debian/ wheezy/main libgs9-common all 9.05~dfsg-6.3+deb7u2 [1977 kB] Get:133 http://mirror-ubc.debian.org/debian/ wheezy/main libgs9 amd64 9.05~dfsg-6.3+deb7u2 [1844 kB] Get:134 http://mirror-ubc.debian.org/debian/ wheezy/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2 [3364 kB] Get:135 http://mirror-ubc.debian.org/debian/ wheezy/main ghostscript amd64 9.05~dfsg-6.3+deb7u2 [80.3 kB] Get:136 http://mirror-ubc.debian.org/debian/ wheezy/main libcdt4 amd64 2.26.3-14+deb7u2 [60.0 kB] Get:137 http://mirror-ubc.debian.org/debian/ wheezy/main libcgraph5 amd64 2.26.3-14+deb7u2 [88.1 kB] Get:138 http://mirror-ubc.debian.org/debian/ wheezy/main libgraph4 amd64 2.26.3-14+deb7u2 [74.0 kB] Get:139 http://mirror-ubc.debian.org/debian/ wheezy/main libpathplan4 amd64 2.26.3-14+deb7u2 [65.3 kB] Get:140 http://mirror-ubc.debian.org/debian/ wheezy/main libxdot4 amd64 2.26.3-14+deb7u2 [54.4 kB] Get:141 http://mirror-ubc.debian.org/debian/ wheezy/main libgvc5 amd64 2.26.3-14+deb7u2 [544 kB] Get:142 http://mirror-ubc.debian.org/debian/ wheezy/main libgvpr1 amd64 2.26.3-14+deb7u2 [244 kB] Get:143 http://mirror-ubc.debian.org/debian/ wheezy/main graphviz amd64 2.26.3-14+deb7u2 [378 kB] Get:144 http://mirror-ubc.debian.org/debian/ wheezy/main hmmer amd64 3.0-4 [2217 kB] Get:145 http://mirror-ubc.debian.org/debian/ wheezy/main infernal amd64 1.0.2-2 [4859 kB] Get:146 http://mirror-ubc.debian.org/debian/ wheezy/main kalign amd64 1:2.03+20110620-2 [94.8 kB] Get:147 http://mirror-ubc.debian.org/debian/ wheezy/main liberror-perl all 0.17-1 [23.6 kB] Get:148 http://mirror-ubc.debian.org/debian/ wheezy/main libipc-sharelite-perl amd64 0.17-2 [27.3 kB] Get:149 http://mirror-ubc.debian.org/debian/ wheezy/main libcache-cache-perl all 1.06-2 [79.3 kB] Get:150 http://mirror-ubc.debian.org/debian/ wheezy/main libace-perl amd64 1.92-2+b2 [351 kB] Get:151 http://mirror-ubc.debian.org/debian/ wheezy/main libalgorithm-c3-perl all 0.08-1 [11.8 kB] Get:152 http://mirror-ubc.debian.org/debian/ wheezy/main libalgorithm-diff-perl all 1.19.02-2 [51.5 kB] Get:153 http://mirror-ubc.debian.org/debian/ wheezy/main libalgorithm-diff-xs-perl amd64 0.04-2+b1 [12.9 kB] Get:154 http://mirror-ubc.debian.org/debian/ wheezy/main libalgorithm-munkres-perl all 0.08-2 [12.5 kB] Get:155 http://mirror-ubc.debian.org/debian/ wheezy/main libperl5.14 amd64 5.14.2-21+deb7u3 [1188 B] Get:156 http://mirror-ubc.debian.org/debian/ wheezy/main libdevel-symdump-perl all 2.08-4 [16.6 kB] Get:157 http://mirror-ubc.debian.org/debian/ wheezy/main liburi-perl all 1.60-1 [100 kB] Get:158 http://mirror-ubc.debian.org/debian/ wheezy/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:159 http://mirror-ubc.debian.org/debian/ wheezy/main libtimedate-perl all 1.2000-1 [41.2 kB] Get:160 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:161 http://mirror-ubc.debian.org/debian/ wheezy/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:162 http://mirror-ubc.debian.org/debian/ wheezy/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:163 http://mirror-ubc.debian.org/debian/ wheezy/main libhtml-parser-perl amd64 3.69-2 [114 kB] Get:164 http://mirror-ubc.debian.org/debian/ wheezy/main libhtml-tree-perl all 5.02-1 [225 kB] Get:165 http://mirror-ubc.debian.org/debian/ wheezy/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:166 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-message-perl all 6.03-1 [78.5 kB] Get:167 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-cookies-perl all 6.00-2 [23.5 kB] Get:168 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:169 http://mirror-ubc.debian.org/debian/ wheezy/main libnet-ssleay-perl amd64 1.48-1+b1 [335 kB] Get:170 http://mirror-ubc.debian.org/debian/ wheezy/main libio-socket-ssl-perl all 1.76-2 [68.0 kB] Get:171 http://mirror-ubc.debian.org/debian/ wheezy/main libnet-http-perl all 6.03-2 [24.3 kB] Get:172 http://mirror-ubc.debian.org/debian/ wheezy/main liblwp-protocol-https-perl all 6.03-1 [7580 B] Get:173 http://mirror-ubc.debian.org/debian/ wheezy/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:174 http://mirror-ubc.debian.org/debian/ wheezy/main libwww-perl all 6.04-1 [203 kB] Get:175 http://mirror-ubc.debian.org/debian/ wheezy/main libapache2-mod-perl2 amd64 2.0.7-3 [1081 kB] Get:176 http://mirror-ubc.debian.org/debian/ wheezy/main libdbi-perl amd64 1.622-1+deb7u1 [892 kB] Get:177 http://mirror-ubc.debian.org/debian/ wheezy/main libapache-dbi-perl all 1.11-1 [54.3 kB] Get:178 http://mirror-ubc.debian.org/debian/ wheezy/main libapache2-reload-perl all 0.12-1 [17.9 kB] Get:179 http://mirror-ubc.debian.org/debian/ wheezy/main libparams-util-perl amd64 1.07-1 [25.7 kB] Get:180 http://mirror-ubc.debian.org/debian/ wheezy/main libsub-install-perl all 0.926-1 [11.2 kB] Get:181 http://mirror-ubc.debian.org/debian/ wheezy/main libdata-optlist-perl all 0.107-1 [10.7 kB] Get:182 http://mirror-ubc.debian.org/debian/ wheezy/main libparams-classify-perl amd64 0.013-4 [26.0 kB] Get:183 http://mirror-ubc.debian.org/debian/ wheezy/main libmodule-runtime-perl all 0.013-1 [17.8 kB] Get:184 http://mirror-ubc.debian.org/debian/ wheezy/main libtry-tiny-perl all 0.11-1 [18.0 kB] Get:185 http://mirror-ubc.debian.org/debian/ wheezy/main libmodule-implementation-perl all 0.06-1 [12.8 kB] Get:186 http://mirror-ubc.debian.org/debian/ wheezy/main liblist-moreutils-perl amd64 0.33-1+b1 [52.5 kB] Get:187 http://mirror-ubc.debian.org/debian/ wheezy/main libpackage-deprecationmanager-perl all 0.13-1 [13.9 kB] Get:188 http://mirror-ubc.debian.org/debian/ wheezy/main libpackage-stash-perl all 0.33-1 [19.5 kB] Get:189 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-load-perl all 0.17-1 [13.0 kB] Get:190 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-load-xs-perl amd64 0.04-1 [13.3 kB] Get:191 http://mirror-ubc.debian.org/debian/ wheezy/main libsub-exporter-perl all 0.984-1 [52.4 kB] Get:192 http://mirror-ubc.debian.org/debian/ wheezy/main libdevel-globaldestruction-perl all 0.06-1 [8432 B] Get:193 http://mirror-ubc.debian.org/debian/ wheezy/main libeval-closure-perl all 0.08-1 [11.1 kB] Get:194 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-c3-perl all 0.24-1 [23.8 kB] Get:195 http://mirror-ubc.debian.org/debian/ wheezy/main libmro-compat-perl all 0.11-1 [12.7 kB] Get:196 http://mirror-ubc.debian.org/debian/ wheezy/main libpackage-stash-xs-perl amd64 0.24-1+b1 [20.2 kB] Get:197 http://mirror-ubc.debian.org/debian/ wheezy/main libsub-name-perl amd64 0.05-1+b2 [10.2 kB] Get:198 http://mirror-ubc.debian.org/debian/ wheezy/main libtask-weaken-perl all 1.03-1 [7690 B] Get:199 http://mirror-ubc.debian.org/debian/ wheezy/main libmoose-perl amd64 2.0603-1 [882 kB] Get:200 http://mirror-ubc.debian.org/debian/ wheezy/main libarray-compare-perl all 2.02-1 [14.6 kB] Get:201 http://mirror-ubc.debian.org/debian/ wheezy/main libvariable-magic-perl amd64 0.50-1 [43.3 kB] Get:202 http://mirror-ubc.debian.org/debian/ wheezy/main libb-hooks-endofscope-perl all 0.11-1 [7322 B] Get:203 http://mirror-ubc.debian.org/debian/ wheezy/main libbio-asn1-entrezgene-perl all 1.100-1 [40.6 kB] Get:204 http://mirror-ubc.debian.org/debian/ wheezy/main libbio-samtools-perl amd64 1.33-1 [208 kB] Get:205 http://mirror-ubc.debian.org/debian/ wheezy/main libcarp-clan-perl all 6.04-1 [15.8 kB] Get:206 http://mirror-ubc.debian.org/debian/ wheezy/main libbit-vector-perl amd64 7.2-1 [172 kB] Get:207 http://mirror-ubc.debian.org/debian/ wheezy/main libbsd-resource-perl amd64 1.2904-1+b2 [31.9 kB] Get:208 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-c3-xs-perl amd64 0.13-1+b2 [16.1 kB] Get:209 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-inspector-perl all 1.27-1 [20.6 kB] Get:210 http://mirror-ubc.debian.org/debian/ wheezy/main libclone-perl amd64 0.31-1+b2 [13.3 kB] Get:211 http://mirror-ubc.debian.org/debian/ wheezy/main libconvert-binary-c-perl amd64 0.76-1+b2 [314 kB] Get:212 http://mirror-ubc.debian.org/debian/ wheezy/main libconvert-binhex-perl all 1.119+pristine-3 [30.3 kB] Get:213 http://mirror-ubc.debian.org/debian/ wheezy/main libcrypt-ssleay-perl amd64 0.58-1 [51.8 kB] Get:214 http://mirror-ubc.debian.org/debian/ wheezy/main libdate-calc-perl all 6.3-1 [218 kB] Get:215 http://mirror-ubc.debian.org/debian/ wheezy/main libdate-calc-xs-perl amd64 6.3-1 [65.1 kB] Get:216 http://mirror-ubc.debian.org/debian/ wheezy/main libdate-manip-perl all 6.32-1 [2870 kB] Get:217 http://mirror-ubc.debian.org/debian/ wheezy/main libdbd-mysql-perl amd64 4.021-1+b1 [126 kB] Get:218 http://mirror-ubc.debian.org/debian/ wheezy/main libdbd-pg-perl amd64 2.19.2-2+deb7u1 [220 kB] Get:219 http://mirror-ubc.debian.org/debian/ wheezy/main libdbd-sqlite3-perl amd64 1.37-1 [113 kB] Get:220 http://mirror-ubc.debian.org/debian/ wheezy/main libsub-identify-perl amd64 0.04-1+b2 [9736 B] Get:221 http://mirror-ubc.debian.org/debian/ wheezy/main libnamespace-clean-perl all 0.23-1 [16.6 kB] Get:222 http://mirror-ubc.debian.org/debian/ wheezy/main libdevel-partialdump-perl all 0.15-1 [13.3 kB] Get:223 http://mirror-ubc.debian.org/debian/ wheezy/main libfcgi-perl amd64 0.74-1+b1 [42.8 kB] Get:224 http://mirror-ubc.debian.org/debian/ wheezy/main libfont-afm-perl all 1.20-1 [14.4 kB] Get:225 http://mirror-ubc.debian.org/debian/ wheezy/main libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:226 http://mirror-ubc.debian.org/debian/ wheezy/main libglib2.0-data all 2.33.12+really2.32.4-5 [1607 kB] Get:227 http://mirror-ubc.debian.org/debian/ wheezy/main libheap-perl all 0.80-2 [43.0 kB] Get:228 http://mirror-ubc.debian.org/debian/ wheezy/main libgraph-perl all 1:0.91-1 [132 kB] Get:229 http://mirror-ubc.debian.org/debian/ wheezy/main libio-pty-perl amd64 1:1.08-1+b2 [40.0 kB] Get:230 http://mirror-ubc.debian.org/debian/ wheezy/main libipc-run-perl all 0.92-1 [110 kB] Get:231 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-parser-perl amd64 2.41-1+b1 [278 kB] Get:232 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-twig-perl all 1:3.39-1 [189 kB] Get:233 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-xpath-perl all 1.13-7 [79.6 kB] Get:234 http://mirror-ubc.debian.org/debian/ wheezy/main libparse-recdescent-perl all 1.967009+dfsg-1 [172 kB] Get:235 http://mirror-ubc.debian.org/debian/ wheezy/main libgraphviz-perl all 2.10-1 [113 kB] Get:236 http://mirror-ubc.debian.org/debian/ wheezy/main libhtml-form-perl all 6.03-1 [23.9 kB] Get:237 http://mirror-ubc.debian.org/debian/ wheezy/main libhtml-format-perl all 2.10-1 [42.1 kB] Get:238 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:239 http://mirror-ubc.debian.org/debian/ wheezy/main libsocket-perl amd64 2.002-1 [40.0 kB] Get:240 http://mirror-ubc.debian.org/debian/ wheezy/main libio-socket-ip-perl all 0.16-2 [23.6 kB] Get:241 http://mirror-ubc.debian.org/debian/ wheezy/main libio-stringy-perl all 2.110-5 [98.3 kB] Get:242 http://mirror-ubc.debian.org/debian/ wheezy/main libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:243 http://mirror-ubc.debian.org/debian/ wheezy/main libmailtools-perl all 2.09-1 [97.6 kB] Get:244 http://mirror-ubc.debian.org/debian/ wheezy/main libmath-derivative-perl all 0.01-6 [6214 B] Get:245 http://mirror-ubc.debian.org/debian/ wheezy/main libmath-spline-perl all 0.01-4 [7680 B] Get:246 http://mirror-ubc.debian.org/debian/ wheezy/main libmime-tools-perl all 5.503-1 [242 kB] Get:247 http://mirror-ubc.debian.org/debian/ wheezy/main libmldbm-perl all 2.04-1 [19.1 kB] Get:248 http://mirror-ubc.debian.org/debian/ wheezy/main libole-storage-lite-perl all 0.19-1 [26.1 kB] Get:249 http://mirror-ubc.debian.org/debian/ wheezy/main libossp-uuid16 amd64 1.6.2-1.3 [58.8 kB] Get:250 http://mirror-ubc.debian.org/debian/ wheezy/main libossp-uuid-perl amd64 1.6.2-1.3 [31.6 kB] Get:251 http://mirror-ubc.debian.org/debian/ wheezy/main libpaper-utils amd64 1.1.24+nmu2 [18.3 kB] Get:252 http://mirror-ubc.debian.org/debian/ wheezy/main libpostscript-perl all 0.06-2 [31.4 kB] Get:253 http://mirror-ubc.debian.org/debian/ wheezy/main libruby1.9.1 amd64 1.9.3.194-8.1+deb7u5 [4414 kB] Get:254 http://mirror-ubc.debian.org/debian/ wheezy/main libsasl2-modules amd64 2.1.25.dfsg1-6+deb7u1 [116 kB] Get:255 http://mirror-ubc.debian.org/debian/ wheezy/main libsoap-lite-perl all 0.714-1 [343 kB] Get:256 http://mirror-ubc.debian.org/debian/ wheezy/main libsort-naturally-perl all 1.02-1 [14.3 kB] Get:257 http://mirror-ubc.debian.org/debian/ wheezy/main libspreadsheet-writeexcel-perl all 2.37-1 [741 kB] Get:258 http://mirror-ubc.debian.org/debian/ wheezy/main libunicode-map-perl amd64 0.112-10+b3 [451 kB] Get:259 http://mirror-ubc.debian.org/debian/ wheezy/main libspreadsheet-parseexcel-perl all 0.5800-1 [166 kB] Get:260 http://mirror-ubc.debian.org/debian/ wheezy/main libstatistics-descriptive-perl all 3.0603-1 [42.5 kB] Get:261 http://mirror-ubc.debian.org/debian/ wheezy/main libsvg-perl all 2.52-1 [85.0 kB] Get:262 http://mirror-ubc.debian.org/debian/ wheezy/main libtree-dagnode-perl all 1.06-1 [51.8 kB] Get:263 http://mirror-ubc.debian.org/debian/ wheezy/main libsvg-graph-perl all 0.02-2 [130 kB] Get:264 http://mirror-ubc.debian.org/debian/ wheezy/main libtie-ixhash-perl all 1.21-2 [12.0 kB] Get:265 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-perl all 0.08-2 [113 kB] Get:266 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-regexp-perl all 0.04-1 [8370 B] Get:267 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-dom-perl all 1.44-1 [184 kB] Get:268 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:269 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-dom-xpath-perl all 0.14-1 [9622 B] Get:270 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-namespacesupport-perl all 1.09-3 [15.3 kB] Get:271 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:272 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:273 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:274 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-libxml-perl amd64 2.0001+dfsg-1+deb7u1 [413 kB] Get:275 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-libxslt-perl amd64 1.77-1 [54.0 kB] Get:276 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:277 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-sax-writer-perl all 0.53-1 [24.0 kB] Get:278 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-simple-perl all 2.20-1 [74.7 kB] Get:279 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-writer-perl all 0.615-1 [30.3 kB] Get:280 http://mirror-ubc.debian.org/debian/ wheezy/main libyaml-libyaml-perl amd64 0.38-3+deb7u3 [78.6 kB] Get:281 http://mirror-ubc.debian.org/debian/ wheezy/main libyaml-perl all 0.81-1 [72.4 kB] Get:282 http://mirror-ubc.debian.org/debian/ wheezy/main maq amd64 0.7.1-5 [321 kB] Get:283 http://mirror-ubc.debian.org/debian/ wheezy/main muscle amd64 1:3.8.31-1 [169 kB] Get:284 http://mirror-ubc.debian.org/debian/ wheezy/main perl-doc all 5.14.2-21+deb7u3 [8166 kB] Get:285 http://mirror-ubc.debian.org/debian/ wheezy/main perl-tk amd64 1:804.030-1 [2524 kB] Get:286 http://mirror-ubc.debian.org/debian/ wheezy/main phyml amd64 2:20110919-1 [1075 kB] Get:287 http://mirror-ubc.debian.org/debian/ wheezy/main primer3 amd64 2.2.3-1 [189 kB] Get:288 http://mirror-ubc.debian.org/debian/ wheezy/main probcons amd64 1.12-9 [196 kB] Get:289 http://mirror-ubc.debian.org/debian/ wheezy/main psmisc amd64 22.19-1+deb7u1 [135 kB] Get:290 http://mirror-ubc.debian.org/debian/ wheezy/main ruby1.9.1 amd64 1.9.3.194-8.1+deb7u5 [209 kB] Get:291 http://mirror-ubc.debian.org/debian/ wheezy/main ruby all 1:1.9.3 [6484 B] Get:292 http://mirror-ubc.debian.org/debian/ wheezy/main samtools amd64 0.1.18-1 [528 kB] Get:293 http://mirror-ubc.debian.org/debian/ wheezy/main shared-mime-info amd64 1.0-1+b1 [595 kB] Get:294 http://mirror-ubc.debian.org/debian/ wheezy/main sim4 amd64 0.0.20030921-3 [54.7 kB] Get:295 http://mirror-ubc.debian.org/debian/ wheezy/main ssl-cert all 1.0.32+deb7u1 [19.6 kB] Get:296 http://mirror-ubc.debian.org/debian/ wheezy/main t-coffee amd64 9.02.r1228-2 [848 kB] Get:297 http://mirror-ubc.debian.org/debian/ wheezy/main tigr-glimmer amd64 3.02-2 [442 kB] Get:298 http://mirror-ubc.debian.org/debian/ wheezy/main tm-align amd64 20120507-1 [62.9 kB] Get:299 http://mirror-ubc.debian.org/debian/ wheezy/main xml-core all 0.13+nmu2 [24.2 kB] Get:300 http://mirror-ubc.debian.org/debian/ wheezy/main bowtie amd64 0.12.7-3 [1285 kB] Get:301 http://mirror-ubc.debian.org/debian/ wheezy/main libgd-gd2-perl amd64 1:2.46-3+b1 [200 kB] Get:302 http://mirror-ubc.debian.org/debian/ wheezy/main libset-scalar-perl all 1.25-1 [36.6 kB] Get:303 http://mirror-ubc.debian.org/debian/ wheezy/main lynx-cur amd64 2.8.8dev.12-2 [2249 kB] Get:304 http://mirror-ubc.debian.org/debian/ wheezy/main lynx all 2.8.8dev.12-2 [223 kB] Get:305 http://mirror-ubc.debian.org/debian/ wheezy/main ttf-liberation all 1.07.2-6 [9284 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 165 MB in 9s (18.1 MB/s) Selecting previously unselected package iproute. (Reading database ... 6657 files and directories currently installed.) Unpacking iproute (from .../iproute_20120521-3+b3_amd64.deb) ... Selecting previously unselected package ifupdown. Unpacking ifupdown (from .../ifupdown_0.7.8_amd64.deb) ... Selecting previously unselected package libgdbm3:amd64. Unpacking libgdbm3:amd64 (from .../libgdbm3_1.8.3-11_amd64.deb) ... Selecting previously unselected package libncursesw5:amd64. Unpacking libncursesw5:amd64 (from .../libncursesw5_5.9-10_amd64.deb) ... Selecting previously unselected package libprocps0:amd64. Unpacking libprocps0:amd64 (from .../libprocps0_1%3a3.3.3-3_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package libcap2:amd64. Unpacking libcap2:amd64 (from .../libcap2_1%3a2.22-1.2_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. 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Unpacking libxft2:amd64 (from .../libxft2_2.3.1-1_amd64.deb) ... Selecting previously unselected package fontconfig. Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_amd64.deb) ... Selecting previously unselected package libpango1.0-0:amd64. Unpacking libpango1.0-0:amd64 (from .../libpango1.0-0_1.30.0-1_amd64.deb) ... Selecting previously unselected package libpaper1:amd64. Unpacking libpaper1:amd64 (from .../libpaper1_1.1.24+nmu2_amd64.deb) ... Selecting previously unselected package libsm6:amd64. Unpacking libsm6:amd64 (from .../libsm6_2%3a1.2.1-2_amd64.deb) ... Selecting previously unselected package libxext6:amd64. Unpacking libxext6:amd64 (from .../libxext6_2%3a1.3.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libxt6:amd64. Unpacking libxt6:amd64 (from .../libxt6_1%3a1.1.3-1+deb7u1_amd64.deb) ... Selecting previously unselected package libxmu6:amd64. Unpacking libxmu6:amd64 (from .../libxmu6_2%3a1.1.1-1_amd64.deb) ... 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Selecting previously unselected package libclone-perl. Unpacking libclone-perl (from .../libclone-perl_0.31-1+b2_amd64.deb) ... Selecting previously unselected package libconvert-binary-c-perl. Unpacking libconvert-binary-c-perl (from .../libconvert-binary-c-perl_0.76-1+b2_amd64.deb) ... Selecting previously unselected package libconvert-binhex-perl. Unpacking libconvert-binhex-perl (from .../libconvert-binhex-perl_1.119+pristine-3_all.deb) ... Selecting previously unselected package libcrypt-ssleay-perl. Unpacking libcrypt-ssleay-perl (from .../libcrypt-ssleay-perl_0.58-1_amd64.deb) ... Selecting previously unselected package libdate-calc-perl. Unpacking libdate-calc-perl (from .../libdate-calc-perl_6.3-1_all.deb) ... Selecting previously unselected package libdate-calc-xs-perl. Unpacking libdate-calc-xs-perl (from .../libdate-calc-xs-perl_6.3-1_amd64.deb) ... Selecting previously unselected package libdate-manip-perl. Unpacking libdate-manip-perl (from .../libdate-manip-perl_6.32-1_all.deb) ... Selecting previously unselected package libdbd-mysql-perl. Unpacking libdbd-mysql-perl (from .../libdbd-mysql-perl_4.021-1+b1_amd64.deb) ... Selecting previously unselected package libdbd-pg-perl. Unpacking libdbd-pg-perl (from .../libdbd-pg-perl_2.19.2-2+deb7u1_amd64.deb) ... Selecting previously unselected package libdbd-sqlite3-perl. Unpacking libdbd-sqlite3-perl (from .../libdbd-sqlite3-perl_1.37-1_amd64.deb) ... Selecting previously unselected package libsub-identify-perl. Unpacking libsub-identify-perl (from .../libsub-identify-perl_0.04-1+b2_amd64.deb) ... Selecting previously unselected package libnamespace-clean-perl. Unpacking libnamespace-clean-perl (from .../libnamespace-clean-perl_0.23-1_all.deb) ... Selecting previously unselected package libdevel-partialdump-perl. Unpacking libdevel-partialdump-perl (from .../libdevel-partialdump-perl_0.15-1_all.deb) ... Selecting previously unselected package libfcgi-perl. Unpacking libfcgi-perl (from .../libfcgi-perl_0.74-1+b1_amd64.deb) ... Selecting previously unselected package libfont-afm-perl. Unpacking libfont-afm-perl (from .../libfont-afm-perl_1.20-1_all.deb) ... Selecting previously unselected package libfreezethaw-perl. Unpacking libfreezethaw-perl (from .../libfreezethaw-perl_0.5001-1_all.deb) ... Selecting previously unselected package libglib2.0-data. Unpacking libglib2.0-data (from .../libglib2.0-data_2.33.12+really2.32.4-5_all.deb) ... Selecting previously unselected package libheap-perl. Unpacking libheap-perl (from .../libheap-perl_0.80-2_all.deb) ... Selecting previously unselected package libgraph-perl. Unpacking libgraph-perl (from .../libgraph-perl_1%3a0.91-1_all.deb) ... Selecting previously unselected package libio-pty-perl. Unpacking libio-pty-perl (from .../libio-pty-perl_1%3a1.08-1+b2_amd64.deb) ... Selecting previously unselected package libipc-run-perl. Unpacking libipc-run-perl (from .../libipc-run-perl_0.92-1_all.deb) ... Selecting previously unselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.41-1+b1_amd64.deb) ... Selecting previously unselected package libxml-twig-perl. Unpacking libxml-twig-perl (from .../libxml-twig-perl_1%3a3.39-1_all.deb) ... Selecting previously unselected package libxml-xpath-perl. Unpacking libxml-xpath-perl (from .../libxml-xpath-perl_1.13-7_all.deb) ... Selecting previously unselected package libparse-recdescent-perl. Unpacking libparse-recdescent-perl (from .../libparse-recdescent-perl_1.967009+dfsg-1_all.deb) ... Selecting previously unselected package libgraphviz-perl. Unpacking libgraphviz-perl (from .../libgraphviz-perl_2.10-1_all.deb) ... Selecting previously unselected package libhtml-form-perl. Unpacking libhtml-form-perl (from .../libhtml-form-perl_6.03-1_all.deb) ... Selecting previously unselected package libhtml-format-perl. Unpacking libhtml-format-perl (from .../libhtml-format-perl_2.10-1_all.deb) ... Selecting previously unselected package libhttp-daemon-perl. Unpacking libhttp-daemon-perl (from .../libhttp-daemon-perl_6.01-1_all.deb) ... Selecting previously unselected package libsocket-perl. Unpacking libsocket-perl (from .../libsocket-perl_2.002-1_amd64.deb) ... Selecting previously unselected package libio-socket-ip-perl. Unpacking libio-socket-ip-perl (from .../libio-socket-ip-perl_0.16-2_all.deb) ... Selecting previously unselected package libio-stringy-perl. Unpacking libio-stringy-perl (from .../libio-stringy-perl_2.110-5_all.deb) ... Selecting previously unselected package libjcode-pm-perl. Unpacking libjcode-pm-perl (from .../libjcode-pm-perl_2.06-1_amd64.deb) ... Selecting previously unselected package libmailtools-perl. Unpacking libmailtools-perl (from .../libmailtools-perl_2.09-1_all.deb) ... Selecting previously unselected package libmath-derivative-perl. Unpacking libmath-derivative-perl (from .../libmath-derivative-perl_0.01-6_all.deb) ... Selecting previously unselected package libmath-spline-perl. Unpacking libmath-spline-perl (from .../libmath-spline-perl_0.01-4_all.deb) ... Selecting previously unselected package libmime-tools-perl. Unpacking libmime-tools-perl (from .../libmime-tools-perl_5.503-1_all.deb) ... Selecting previously unselected package libmldbm-perl. Unpacking libmldbm-perl (from .../libmldbm-perl_2.04-1_all.deb) ... Selecting previously unselected package libole-storage-lite-perl. Unpacking libole-storage-lite-perl (from .../libole-storage-lite-perl_0.19-1_all.deb) ... Selecting previously unselected package libossp-uuid16. Unpacking libossp-uuid16 (from .../libossp-uuid16_1.6.2-1.3_amd64.deb) ... Selecting previously unselected package libossp-uuid-perl. Unpacking libossp-uuid-perl (from .../libossp-uuid-perl_1.6.2-1.3_amd64.deb) ... Selecting previously unselected package libpaper-utils. Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2_amd64.deb) ... Selecting previously unselected package libpostscript-perl. Unpacking libpostscript-perl (from .../libpostscript-perl_0.06-2_all.deb) ... Selecting previously unselected package libruby1.9.1. Unpacking libruby1.9.1 (from .../libruby1.9.1_1.9.3.194-8.1+deb7u5_amd64.deb) ... Selecting previously unselected package libsasl2-modules:amd64. Unpacking libsasl2-modules:amd64 (from .../libsasl2-modules_2.1.25.dfsg1-6+deb7u1_amd64.deb) ... Selecting previously unselected package libsoap-lite-perl. Unpacking libsoap-lite-perl (from .../libsoap-lite-perl_0.714-1_all.deb) ... Selecting previously unselected package libsort-naturally-perl. Unpacking libsort-naturally-perl (from .../libsort-naturally-perl_1.02-1_all.deb) ... Selecting previously unselected package libspreadsheet-writeexcel-perl. Unpacking libspreadsheet-writeexcel-perl (from .../libspreadsheet-writeexcel-perl_2.37-1_all.deb) ... Selecting previously unselected package libunicode-map-perl. Unpacking libunicode-map-perl (from .../libunicode-map-perl_0.112-10+b3_amd64.deb) ... Selecting previously unselected package libspreadsheet-parseexcel-perl. Unpacking libspreadsheet-parseexcel-perl (from .../libspreadsheet-parseexcel-perl_0.5800-1_all.deb) ... Selecting previously unselected package libstatistics-descriptive-perl. Unpacking libstatistics-descriptive-perl (from .../libstatistics-descriptive-perl_3.0603-1_all.deb) ... Selecting previously unselected package libsvg-perl. Unpacking libsvg-perl (from .../libsvg-perl_2.52-1_all.deb) ... Selecting previously unselected package libtree-dagnode-perl. Unpacking libtree-dagnode-perl (from .../libtree-dagnode-perl_1.06-1_all.deb) ... Selecting previously unselected package libsvg-graph-perl. Unpacking libsvg-graph-perl (from .../libsvg-graph-perl_0.02-2_all.deb) ... Selecting previously unselected package libtie-ixhash-perl. Unpacking libtie-ixhash-perl (from .../libtie-ixhash-perl_1.21-2_all.deb) ... Selecting previously unselected package libxml-perl. Unpacking libxml-perl (from .../libxml-perl_0.08-2_all.deb) ... Selecting previously unselected package libxml-regexp-perl. Unpacking libxml-regexp-perl (from .../libxml-regexp-perl_0.04-1_all.deb) ... Selecting previously unselected package libxml-dom-perl. Unpacking libxml-dom-perl (from .../libxml-dom-perl_1.44-1_all.deb) ... Selecting previously unselected package libxml-xpathengine-perl. Unpacking libxml-xpathengine-perl (from .../libxml-xpathengine-perl_0.13-1_all.deb) ... Selecting previously unselected package libxml-dom-xpath-perl. Unpacking libxml-dom-xpath-perl (from .../libxml-dom-xpath-perl_0.14-1_all.deb) ... Selecting previously unselected package libxml-namespacesupport-perl. Unpacking libxml-namespacesupport-perl (from .../libxml-namespacesupport-perl_1.09-3_all.deb) ... Selecting previously unselected package libxml-sax-base-perl. Unpacking libxml-sax-base-perl (from .../libxml-sax-base-perl_1.07-1_all.deb) ... Selecting previously unselected package libxml-sax-perl. Unpacking libxml-sax-perl (from .../libxml-sax-perl_0.99+dfsg-2_all.deb) ... Selecting previously unselected package libxml-filter-buffertext-perl. Unpacking libxml-filter-buffertext-perl (from .../libxml-filter-buffertext-perl_1.01-5_all.deb) ... Selecting previously unselected package libxml-libxml-perl. Unpacking libxml-libxml-perl (from .../libxml-libxml-perl_2.0001+dfsg-1+deb7u1_amd64.deb) ... Selecting previously unselected package libxml-libxslt-perl. Unpacking libxml-libxslt-perl (from .../libxml-libxslt-perl_1.77-1_amd64.deb) ... Selecting previously unselected package libxml-sax-expat-perl. Unpacking libxml-sax-expat-perl (from .../libxml-sax-expat-perl_0.40-2_all.deb) ... Selecting previously unselected package libxml-sax-writer-perl. Unpacking libxml-sax-writer-perl (from .../libxml-sax-writer-perl_0.53-1_all.deb) ... Selecting previously unselected package libxml-simple-perl. Unpacking libxml-simple-perl (from .../libxml-simple-perl_2.20-1_all.deb) ... Selecting previously unselected package libxml-writer-perl. Unpacking libxml-writer-perl (from .../libxml-writer-perl_0.615-1_all.deb) ... Selecting previously unselected package libyaml-libyaml-perl. Unpacking libyaml-libyaml-perl (from .../libyaml-libyaml-perl_0.38-3+deb7u3_amd64.deb) ... Selecting previously unselected package libyaml-perl. Unpacking libyaml-perl (from .../libyaml-perl_0.81-1_all.deb) ... Selecting previously unselected package maq. Unpacking maq (from .../archives/maq_0.7.1-5_amd64.deb) ... Selecting previously unselected package muscle. Unpacking muscle (from .../muscle_1%3a3.8.31-1_amd64.deb) ... Selecting previously unselected package perl-doc. Unpacking perl-doc (from .../perl-doc_5.14.2-21+deb7u3_all.deb) ... Adding 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Selecting previously unselected package perl-tk. Unpacking perl-tk (from .../perl-tk_1%3a804.030-1_amd64.deb) ... Selecting previously unselected package phyml. Unpacking phyml (from .../phyml_2%3a20110919-1_amd64.deb) ... Selecting previously unselected package primer3. Unpacking primer3 (from .../primer3_2.2.3-1_amd64.deb) ... Selecting previously unselected package probcons. Unpacking probcons (from .../probcons_1.12-9_amd64.deb) ... Selecting previously unselected package psmisc. Unpacking psmisc (from .../psmisc_22.19-1+deb7u1_amd64.deb) ... Selecting previously unselected package ruby1.9.1. Unpacking ruby1.9.1 (from .../ruby1.9.1_1.9.3.194-8.1+deb7u5_amd64.deb) ... Selecting previously unselected package ruby. Unpacking ruby (from .../ruby_1%3a1.9.3_all.deb) ... Selecting previously unselected package samtools. Unpacking samtools (from .../samtools_0.1.18-1_amd64.deb) ... Selecting previously unselected package shared-mime-info. Unpacking shared-mime-info (from .../shared-mime-info_1.0-1+b1_amd64.deb) ... Selecting previously unselected package sim4. Unpacking sim4 (from .../sim4_0.0.20030921-3_amd64.deb) ... Selecting previously unselected package ssl-cert. Unpacking ssl-cert (from .../ssl-cert_1.0.32+deb7u1_all.deb) ... Selecting previously unselected package t-coffee. Unpacking t-coffee (from .../t-coffee_9.02.r1228-2_amd64.deb) ... Selecting previously unselected package tigr-glimmer. Unpacking tigr-glimmer (from .../tigr-glimmer_3.02-2_amd64.deb) ... Selecting previously unselected package tm-align. Unpacking tm-align (from .../tm-align_20120507-1_amd64.deb) ... Selecting previously unselected package xml-core. Unpacking xml-core (from .../xml-core_0.13+nmu2_all.deb) ... Selecting previously unselected package bowtie. Unpacking bowtie (from .../bowtie_0.12.7-3_amd64.deb) ... Selecting previously unselected package libgd-gd2-perl. Unpacking libgd-gd2-perl (from .../libgd-gd2-perl_1%3a2.46-3+b1_amd64.deb) ... Selecting previously unselected package libset-scalar-perl. Unpacking libset-scalar-perl (from .../libset-scalar-perl_1.25-1_all.deb) ... Selecting previously unselected package lynx-cur. Unpacking lynx-cur (from .../lynx-cur_2.8.8dev.12-2_amd64.deb) ... Selecting previously unselected package lynx. Unpacking lynx (from .../lynx_2.8.8dev.12-2_all.deb) ... Selecting previously unselected package ttf-liberation. Unpacking ttf-liberation (from .../ttf-liberation_1.07.2-6_all.deb) ... Setting up iproute (20120521-3+b3) ... Setting up ifupdown (0.7.8) ... Creating /etc/network/interfaces. Setting up libgdbm3:amd64 (1.8.3-11) ... Setting up libncursesw5:amd64 (5.9-10) ... Setting up libprocps0:amd64 (1:3.3.3-3) ... Setting up libssl1.0.0:amd64 (1.0.1e-2+deb7u20) ... Setting up libcap2:amd64 (1:2.22-1.2) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2+deb7u2) ... Setting up libgnutls26:amd64 (2.12.20-8+deb7u5) ... Setting up libgpm2:amd64 (1.20.4-6) ... Setting up libkeyutils1:amd64 (1.5.5-3+deb7u1) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libidn11:amd64 (1.25-2) ... Setting up libsasl2-2:amd64 (2.1.25.dfsg1-6+deb7u1) ... Setting up libldap-2.4-2:amd64 (2.4.31-2+deb7u2) ... Setting up libmagic1:amd64 (5.11-2+deb7u8) ... Setting up libpcre3:amd64 (1:8.30-5) ... Setting up libsqlite3-0:amd64 (3.7.13-1+deb7u2) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7+wheezy5) ... Setting up bedtools (2.16.1-1) ... Setting up libatm1:amd64 (1:2.5.1-1.5) ... Setting up libavahi-common-data:amd64 (0.6.31-2) ... Setting up libavahi-common3:amd64 (0.6.31-2) ... Setting up libdbus-1-3:amd64 (1.6.8-1+deb7u6) ... Setting up libavahi-client3:amd64 (0.6.31-2) ... Setting up libbsd0:amd64 (0.4.2-1) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u2) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u3) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1) ... Setting up libpixman-1-0:amd64 (0.26.0-4+deb7u2) ... Setting up libpng12-0:amd64 (1.2.49-1+deb7u2) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u2) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u2) ... Setting up libxcb-render0:amd64 (1.8.1-2+deb7u1) ... Setting up libxcb-shm0:amd64 (1.8.1-2+deb7u1) ... Setting up libxrender1:amd64 (1:0.9.7-1+deb7u2) ... Setting up libcairo2:amd64 (1.12.2-3) ... Setting up libcups2:amd64 (1.5.3-5+deb7u6) ... Setting up libjpeg8:amd64 (8d-1+deb7u1) ... Setting up libjbig0:amd64 (2.0-2+deb7u1) ... Setting up libtiff4:amd64 (3.9.6-11) ... Setting up libcupsimage2:amd64 (1.5.3-5+deb7u6) ... Setting up libdatrie1:amd64 (0.2.5-3) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libxpm4:amd64 (1:3.5.10-1) ... Setting up libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Setting up libquadmath0:amd64 (4.7.2-5) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up libglib2.0-0:amd64 (2.33.12+really2.32.4-5) ... No schema files found: doing nothing. Setting up x11-common (1:7.7+3~deb7u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up libjasper1:amd64 (1.900.1-13+deb7u4) ... Setting up liblcms2-2:amd64 (2.2+git20110628-2.2+deb7u1) ... Setting up libltdl7:amd64 (2.4.2-1.1) ... Setting up mysql-common (5.5.47-0+deb7u1) ... Setting up libmysqlclient18:amd64 (5.5.47-0+deb7u1) ... Setting up ncbi-data (6.1.20120620-2) ... Setting up libncbi6:amd64 (6.1.20120620-2) ... Setting up libthai-data (0.1.18-2) ... Setting up libthai0:amd64 (0.1.18-2) ... Setting up libxft2:amd64 (2.3.1-1) ... Setting up fontconfig (2.9.0-7.1) ... Regenerating fonts cache... done. Setting up libpango1.0-0:amd64 (1.30.0-1) ... Setting up libpaper1:amd64 (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libxext6:amd64 (2:1.3.1-2+deb7u1) ... Setting up libxt6:amd64 (1:1.1.3-1+deb7u1) ... Setting up libxmu6:amd64 (2:1.1.1-1) ... Setting up libxaw7:amd64 (2:1.0.10-2) ... Setting up libxslt1.1:amd64 (1.1.26-14.1) ... Setting up libyaml-0-2:amd64 (0.1.4-2+deb7u5) ... Setting up libclass-isa-perl (0.36-3) ... Setting up mafft (6.864-1) ... Setting up poppler-data (0.4.5-10) ... Setting up wise (2.4.1-10) ... Setting up libsystemd-login0:amd64 (44-11+deb7u4) ... Setting up adduser (3.113+nmu3) ... Setting up netbase (5.0) ... Setting up procps (1:3.3.3-3) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode invoke-rc.d: policy-rc.d denied execution of start. Setting up file (5.11-2+deb7u8) ... Setting up krb5-locales (1.10.1+dfsg-5+deb7u7) ... Setting up mime-support (3.52-1+deb7u1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up amap-align (2.2-3) ... Setting up libapr1 (1.4.6-3+deb7u1) ... Setting up libaprutil1 (1.4.1-3) ... Setting up libaprutil1-dbd-sqlite3 (1.4.1-3) ... Setting up libaprutil1-ldap (1.4.1-3) ... Setting up apache2.2-bin (2.2.22-13+deb7u6) ... Setting up apache2-utils (2.2.22-13+deb7u6) ... Setting up blast2 (1:2.2.26.20120620-2) ... Setting up bwa (0.6.2-1) ... Setting up openssl (1.0.1e-2+deb7u20) ... Setting up ca-certificates (20130119+deb7u1) ... Setting up clustalw (2.1+lgpl-2) ... Setting up dbus (1.6.8-1+deb7u6) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up dialign (2.2.1-5) ... Setting up libhpdf-2.2.1 (2.2.1-1) ... Setting up libpq5 (9.1.21-0+deb7u1) ... Setting up emboss-lib (6.4.0-2) ... Setting up emboss-data (6.4.0-2) ... Setting up emboss (6.4.0-2) ... Setting up exonerate (2.2.0-6) ... Setting up fonts-droid (20111207+git-1) ... Setting up fonts-liberation (1.07.2-6) ... Setting up libijs-0.35 (0.35-8) ... Setting up libjbig2dec0 (0.11+20120125-1) ... Setting up libgs9-common (9.05~dfsg-6.3+deb7u2) ... Setting up libgs9 (9.05~dfsg-6.3+deb7u2) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Setting up ghostscript (9.05~dfsg-6.3+deb7u2) ... Setting up libcdt4 (2.26.3-14+deb7u2) ... Setting up libcgraph5 (2.26.3-14+deb7u2) ... Setting up libgraph4 (2.26.3-14+deb7u2) ... Setting up libpathplan4 (2.26.3-14+deb7u2) ... Setting up libxdot4 (2.26.3-14+deb7u2) ... Setting up libgvc5 (2.26.3-14+deb7u2) ... Setting up libgvpr1 (2.26.3-14+deb7u2) ... Setting up graphviz (2.26.3-14+deb7u2) ... Setting up hmmer (3.0-4) ... Setting up infernal (1.0.2-2) ... Setting up kalign (1:2.03+20110620-2) ... Setting up libperl5.14 (5.14.2-21+deb7u3) ... Setting up libglib2.0-data (2.33.12+really2.32.4-5) ... Setting up libossp-uuid16 (1.6.2-1.3) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Setting up libsasl2-modules:amd64 (2.1.25.dfsg1-6+deb7u1) ... Setting up maq (0.7.1-5) ... Setting up muscle (1:3.8.31-1) ... Setting up phyml (2:20110919-1) ... Setting up primer3 (2.2.3-1) ... Setting up probcons (1.12-9) ... Setting up psmisc (22.19-1+deb7u1) ... Setting up ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... update-alternatives: using /usr/bin/gem1.9.1 to provide /usr/bin/gem (gem) in auto mode update-alternatives: using /usr/bin/ruby1.9.1 to provide /usr/bin/ruby (ruby) in auto mode Setting up ruby (1:1.9.3) ... Setting up samtools (0.1.18-1) ... Setting up shared-mime-info (1.0-1+b1) ... Setting up sim4 (0.0.20030921-3) ... Setting up ssl-cert (1.0.32+deb7u1) ... Setting up t-coffee (9.02.r1228-2) ... Setting up tigr-glimmer (3.02-2) ... Setting up tm-align (20120507-1) ... Setting up bowtie (0.12.7-3) ... Setting up lynx-cur (2.8.8dev.12-2) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx (2.8.8dev.12-2) ... Setting up ttf-liberation (1.07.2-6) ... Setting up libswitch-perl (2.16-2) ... Setting up perl-modules (5.14.2-21+deb7u3) ... Setting up perl (5.14.2-21+deb7u3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libyaml-syck-perl (1.20-1) ... Setting up sgml-base (1.26+nmu4) ... Setting up apache2.2-common (2.2.22-13+deb7u6) ... Enabling site default. Enabling module alias. Enabling module autoindex. Enabling module dir. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module status. Enabling module auth_basic. Enabling module deflate. Enabling module authz_default. Enabling module authz_user. Enabling module authz_groupfile. Enabling module authn_file. Enabling module authz_host. Enabling module reqtimeout. Setting up apache2-mpm-worker (2.2.22-13+deb7u6) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up apache2 (2.2.22-13+deb7u6) ... Setting up libio-string-perl (1.08-2) ... Setting up libdata-stag-perl (0.11-2) ... Setting up libbio-perl-perl (1.6.901-3) ... Setting up bioperl (1.6.901-3) ... Setting up libbio-perl-run-perl (1.6.9-1) ... Setting up bioperl-run (1.6.9-1) ... Setting up liberror-perl (0.17-1) ... Setting up libipc-sharelite-perl (0.17-2) ... Setting up libcache-cache-perl (1.06-2) ... Setting up libace-perl (1.92-2+b2) ... Setting up libalgorithm-c3-perl (0.08-1) ... Setting up libalgorithm-diff-perl (1.19.02-2) ... Setting up libalgorithm-diff-xs-perl (0.04-2+b1) ... Setting up libalgorithm-munkres-perl (0.08-2) ... Setting up libdevel-symdump-perl (2.08-4) ... Setting up liburi-perl (1.60-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libtimedate-perl (1.2000-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-2) ... Setting up libhtml-tree-perl (5.02-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.03-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.48-1+b1) ... Setting up libio-socket-ssl-perl (1.76-2) ... Setting up libnet-http-perl (6.03-2) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libwww-perl (6.04-1) ... Setting up libapache2-mod-perl2 (2.0.7-3) ... Enabling module perl. To activate the new configuration, you need to run: service apache2 restart Setting up libdbi-perl (1.622-1+deb7u1) ... Setting up libapache-dbi-perl (1.11-1) ... Setting up libapache2-reload-perl (0.12-1) ... Setting up libparams-util-perl (1.07-1) ... Setting up libsub-install-perl (0.926-1) ... Setting up libdata-optlist-perl (0.107-1) ... Setting up libparams-classify-perl (0.013-4) ... Setting up libmodule-runtime-perl (0.013-1) ... Setting up libtry-tiny-perl (0.11-1) ... Setting up libmodule-implementation-perl (0.06-1) ... Setting up liblist-moreutils-perl (0.33-1+b1) ... Setting up libpackage-deprecationmanager-perl (0.13-1) ... Setting up libpackage-stash-perl (0.33-1) ... Setting up libclass-load-perl (0.17-1) ... Setting up libclass-load-xs-perl (0.04-1) ... Setting up libsub-exporter-perl (0.984-1) ... Setting up libdevel-globaldestruction-perl (0.06-1) ... Setting up libeval-closure-perl (0.08-1) ... Setting up libclass-c3-perl (0.24-1) ... Setting up libmro-compat-perl (0.11-1) ... Setting up libpackage-stash-xs-perl (0.24-1+b1) ... Setting up libsub-name-perl (0.05-1+b2) ... Setting up libtask-weaken-perl (1.03-1) ... Setting up libmoose-perl (2.0603-1) ... Setting up libarray-compare-perl (2.02-1) ... Setting up libvariable-magic-perl (0.50-1) ... Setting up libb-hooks-endofscope-perl (0.11-1) ... Setting up libbio-asn1-entrezgene-perl (1.100-1) ... Setting up libbio-samtools-perl (1.33-1) ... Setting up libcarp-clan-perl (6.04-1) ... Setting up libbit-vector-perl (7.2-1) ... Setting up libbsd-resource-perl (1.2904-1+b2) ... Setting up libclass-c3-xs-perl (0.13-1+b2) ... Setting up libclass-inspector-perl (1.27-1) ... Setting up libclone-perl (0.31-1+b2) ... Setting up libconvert-binary-c-perl (0.76-1+b2) ... Setting up libconvert-binhex-perl (1.119+pristine-3) ... Setting up libcrypt-ssleay-perl (0.58-1) ... Setting up libdate-calc-perl (6.3-1) ... Setting up libdate-calc-xs-perl (6.3-1) ... Setting up libdate-manip-perl (6.32-1) ... Setting up libdbd-mysql-perl (4.021-1+b1) ... Setting up libdbd-pg-perl (2.19.2-2+deb7u1) ... Setting up libdbd-sqlite3-perl (1.37-1) ... Setting up libsub-identify-perl (0.04-1+b2) ... Setting up libnamespace-clean-perl (0.23-1) ... Setting up libdevel-partialdump-perl (0.15-1) ... Setting up libfcgi-perl (0.74-1+b1) ... Setting up libfont-afm-perl (1.20-1) ... Setting up libfreezethaw-perl (0.5001-1) ... Setting up libheap-perl (0.80-2) ... Setting up libgraph-perl (1:0.91-1) ... Setting up libio-pty-perl (1:1.08-1+b2) ... Setting up libipc-run-perl (0.92-1) ... Setting up libxml-parser-perl (2.41-1+b1) ... Setting up libxml-twig-perl (1:3.39-1) ... Setting up libxml-xpath-perl (1.13-7) ... Setting up libparse-recdescent-perl (1.967009+dfsg-1) ... Setting up libgraphviz-perl (2.10-1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libhtml-format-perl (2.10-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libsocket-perl (2.002-1) ... Setting up libio-socket-ip-perl (0.16-2) ... Setting up libio-stringy-perl (2.110-5) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up libmailtools-perl (2.09-1) ... Setting up libmath-derivative-perl (0.01-6) ... Setting up libmath-spline-perl (0.01-4) ... Setting up libmime-tools-perl (5.503-1) ... Setting up libmldbm-perl (2.04-1) ... Setting up libole-storage-lite-perl (0.19-1) ... Setting up libossp-uuid-perl (1.6.2-1.3) ... Setting up libpostscript-perl (0.06-2) ... Setting up libsoap-lite-perl (0.714-1) ... Setting up libsort-naturally-perl (1.02-1) ... Setting up libspreadsheet-writeexcel-perl (2.37-1) ... Setting up libunicode-map-perl (0.112-10+b3) ... Setting up libspreadsheet-parseexcel-perl (0.5800-1) ... Setting up libstatistics-descriptive-perl (3.0603-1) ... Setting up libsvg-perl (2.52-1) ... Setting up libtree-dagnode-perl (1.06-1) ... Setting up libsvg-graph-perl (0.02-2) ... Setting up libtie-ixhash-perl (1.21-2) ... Setting up libxml-perl (0.08-2) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up libxml-dom-perl (1.44-1) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up libxml-dom-xpath-perl (0.14-1) ... Setting up libxml-namespacesupport-perl (1.09-3) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-filter-buffertext-perl (1.01-5) ... Setting up libxml-libxml-perl (2.0001+dfsg-1+deb7u1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxslt-perl (1.77-1) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-sax-writer-perl (0.53-1) ... Setting up libxml-simple-perl (2.20-1) ... Setting up libxml-writer-perl (0.615-1) ... Setting up libyaml-libyaml-perl (0.38-3+deb7u3) ... Setting up libyaml-perl (0.81-1) ... Setting up perl-doc (5.14.2-21+deb7u3) ... Setting up perl-tk (1:804.030-1) ... Setting up xml-core (0.13+nmu2) ... Setting up libgd-gd2-perl (1:2.46-3+b1) ... Setting up libset-scalar-perl (1.25-1) ... Setting up liblwp-protocol-https-perl (6.03-1) ... Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 171 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for sgml-base ... 0m48.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', '-y', 'install', 'libbio-samtools-perl'] 0m48.1s INFO: Running scripts post_install 0m48.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_install_exceptions'] 0m48.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_install_exceptions'] 0m48.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 0m49.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 0m49.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp8VwU1z to jessie 0m49.6s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ jessie main 0m49.6s INFO: Running scripts pre_distupgrade 0m49.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_distupgrade_exceptions'] 0m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_distupgrade_exceptions'] 0m49.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m49.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m49.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m49.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m49.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m49.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', 'update'] 0m53.3s DUMP: Get:1 http://mirror-ubc.debian.org jessie Release.gpg [2420 B] Get:2 http://mirror-ubc.debian.org jessie Release [148 kB] Get:3 http://mirror-ubc.debian.org jessie/main amd64 Packages [6818 kB] Get:4 http://mirror-ubc.debian.org jessie/main Translation-en [4581 kB] Fetched 11.5 MB in 2s (4849 kB/s) Reading package lists... 0m53.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', 'update'] 0m53.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', '-yf', 'dist-upgrade'] 2m24.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gcc-4.7-base libgd-gd2-perl libgvc5 libperl5.14 The following NEW packages will be installed: acl apache2-bin apache2-data clustalo dialign-tx dialign-tx-data dmsetup fonts-dejavu-core gcc-4.9-base init iproute2 isc-dhcp-client isc-dhcp-common javascript-common libarchive-extract-perl libargtable2-0 libaudit-common libaudit1 libauthen-sasl-perl libb-hooks-op-check-perl libbareword-filehandles-perl libcap-ng0 libcap2-bin libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-method-modifiers-perl libclass-tiny-perl libclass-xsaccessor-perl libcpan-meta-perl libcrypt-rc4-perl libcryptsetup4 libcupsfilters1 libdata-section-perl libdb5.3 libdebconfclient0 libdevel-caller-perl libdevel-lexalias-perl libdevel-stacktrace-perl libdevmapper1.02.1 libdigest-perl-md5-perl libdist-checkconflicts-perl libdns-export100 libexporter-tiny-perl libffi6 libfile-slurp-tiny-perl libgcrypt20 libgd-perl libgd3 libgmp10 libgnutls-deb0-28 libgomp1 libgraphite2-3 libgvc6 libgvpr2 libharfbuzz0b libhogweed2 libhtml-tableextract-perl libimport-into-perl libindirect-perl libio-html-perl libio-sessiondata-perl libirs-export91 libisc-export95 libisccfg-export90 libjpeg62-turbo libjs-jquery libkmod2 liblexical-sealrequirehints-perl liblog-message-perl liblog-message-simple-perl liblua5.1-0 libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-conflicts-perl libmodule-signature-perl libmoo-perl libmultidimensional-perl libnet-smtp-ssl-perl libnettle4 libpackage-constants-perl libpadwalker-perl libpam-cap libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangox-1.0-0 libpangoxft-1.0-0 libperl5.20 libpod-latex-perl libpod-readme-perl libprocps3 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libregexp-common-perl librole-tiny-perl libruby2.1 libsasl2-modules-db libsmartcols1 libsoftware-license-perl libstrictures-perl libsub-exporter-progressive-perl libsystemd0 libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libtiff5 libtype-tiny-perl libtype-tiny-xs-perl libudev1 libvpx1 libxmlrpc-lite-perl libxtables10 mustang ncbi-blast+ poa prank probalign proda python python-minimal python2.7 python2.7-minimal rename ruby2.1 rubygems-integration startpar systemd systemd-sysv udev wise-data xdg-user-dirs The following packages will be upgraded: amap-align apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common apt base-files base-passwd bash bedtools bioperl bioperl-run blast2 bowtie bsdutils bwa ca-certificates clustalw coreutils dash dbus debconf debconf-i18n debian-archive-keyring debianutils dialign diffutils dpkg e2fslibs e2fsprogs emboss emboss-data emboss-lib file findutils fontconfig fontconfig-config fonts-droid fonts-liberation ghostscript gnupg gpgv graphviz grep gzip hmmer hostname ifupdown infernal initscripts iproute krb5-locales libace-perl libacl1 libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libapt-pkg4.12 libarray-compare-perl libattr1 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbio-samtools-perl libbit-vector-perl libblkid1 libbsd-resource-perl libbsd0 libbz2-1.0 libc-bin libc6 libcache-cache-perl libcairo2 libcap2 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcomerr2 libconvert-binary-c-perl libconvert-binhex-perl libcrypt-ssleay-perl libcups2 libcupsimage2 libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-globaldestruction-perl libdevel-partialdump-perl libdevel-symdump-perl liberror-perl libeval-closure-perl libexpat1 libfcgi-perl libfontconfig1 libfreetype6 libgcc1 libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgpg-error0 libgpm2 libgraph-perl libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libhpdf-2.2.1 libhtml-format-perl libhtml-parser-perl libhtml-tree-perl libhttp-cookies-perl libhttp-message-perl libice6 libidn11 libijs-0.35 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libipc-run-perl libipc-sharelite-perl libjasper1 libjbig0 libjbig2dec0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblist-moreutils-perl liblocale-gettext-perl libltdl7 liblwp-protocol-https-perl liblzma5 libmagic1 libmailtools-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoose-perl libmount1 libmro-compat-perl libmysqlclient18 libnamespace-clean-perl libncbi6 libncurses5 libncursesw5 libnet-http-perl libnet-ssleay-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-stash-perl libpackage-stash-xs-perl libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpathplan4 libpcre3 libpixman-1-0 libpng12-0 libpq5 libquadmath0 libreadline6 libsasl2-2 libsasl2-modules libselinux1 libsemanage-common libsemanage1 libsepol1 libset-scalar-perl libslang2 libsm6 libsoap-lite-perl libsocket-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libss2 libssl1.0.0 libstatistics-descriptive-perl libstdc++6 libsub-exporter-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-perl libswitch-perl libsystemd-login0 libtask-weaken-perl libtext-charwidth-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtimedate-perl libtinfo5 libtree-dagnode-perl libtry-tiny-perl libunicode-map-perl liburi-perl libusb-0.1-4 libustr-1.0-1 libuuid1 libvariable-magic-perl libwww-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-writer-perl libxml-twig-perl libxml-writer-perl libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-syck-perl login lsb-base lynx lynx-cur mafft mime-support mount multiarch-support mysql-common ncbi-data ncurses-base ncurses-bin netbase openssl passwd perl perl-base perl-doc perl-modules perl-tk phyml poppler-data primer3 procps psmisc readline-common ruby samtools sed sensible-utils shared-mime-info sim4 ssl-cert sysv-rc sysvinit sysvinit-utils t-coffee tar tigr-glimmer tm-align ttf-dejavu-core ttf-liberation tzdata ucf util-linux wise x11-common xz-utils zlib1g 318 upgraded, 136 newly installed, 4 to remove and 0 not upgraded. Need to get 215 MB of archives. After this operation, 326 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ jessie/main libc6 amd64 2.19-18+deb8u10 [4665 kB] Get:2 http://mirror-ubc.debian.org/debian/ jessie/main libc-bin amd64 2.19-18+deb8u10 [1281 kB] Get:3 http://mirror-ubc.debian.org/debian/ jessie/main gcc-4.9-base amd64 4.9.2-10+deb8u1 [160 kB] Get:4 http://mirror-ubc.debian.org/debian/ jessie/main libstdc++6 amd64 4.9.2-10+deb8u1 [273 kB] Get:5 http://mirror-ubc.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:6 http://mirror-ubc.debian.org/debian/ jessie/main libgcc1 amd64 1:4.9.2-10+deb8u1 [39.5 kB] Get:7 http://mirror-ubc.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:8 http://mirror-ubc.debian.org/debian/ jessie/main libcdt5 amd64 2.38.0-7 [62.7 kB] Get:9 http://mirror-ubc.debian.org/debian/ jessie/main libcgraph6 amd64 2.38.0-7 [85.2 kB] Get:10 http://mirror-ubc.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:11 http://mirror-ubc.debian.org/debian/ jessie/main zlib1g amd64 1:1.2.8.dfsg-2+b1 [88.8 kB] Get:12 http://mirror-ubc.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:13 http://mirror-ubc.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:14 http://mirror-ubc.debian.org/debian/ jessie/main libpcre3 amd64 2:8.35-3.3+deb8u4 [322 kB] Get:15 http://mirror-ubc.debian.org/debian/ jessie/main libselinux1 amd64 2.3-2 [89.8 kB] Get:16 http://mirror-ubc.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:17 http://mirror-ubc.debian.org/debian/ jessie/main dpkg amd64 1.17.27 [2994 kB] Get:18 http://mirror-ubc.debian.org/debian/ jessie/main libdb5.3 amd64 5.3.28-9+deb8u1 [680 kB] Get:19 http://mirror-ubc.debian.org/debian/ jessie/main iproute all 1:3.16.0-2 [15.5 kB] Get:20 http://mirror-ubc.debian.org/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB] Get:21 http://mirror-ubc.debian.org/debian/ jessie/main startpar amd64 0.59-3 [21.8 kB] Get:22 http://mirror-ubc.debian.org/debian/ jessie/main sysvinit-utils amd64 2.88dsf-59 [84.4 kB] Get:23 http://mirror-ubc.debian.org/debian/ jessie/main base-files amd64 8+deb8u11 [78.2 kB] Get:24 http://mirror-ubc.debian.org/debian/ jessie/main sysv-rc all 2.88dsf-59 [82.8 kB] Get:25 http://mirror-ubc.debian.org/debian/ jessie/main libaudit-common all 1:2.4-1 [13.5 kB] Get:26 http://mirror-ubc.debian.org/debian/ jessie/main libaudit1 amd64 1:2.4-1+b1 [44.7 kB] Get:27 http://mirror-ubc.debian.org/debian/ jessie/main libpam0g amd64 1.1.8-3.1+deb8u2+b1 [126 kB] Get:28 http://mirror-ubc.debian.org/debian/ jessie/main libsemanage-common all 2.3-1 [24.6 kB] Get:29 http://mirror-ubc.debian.org/debian/ jessie/main libsemanage1 amd64 2.3-1+b1 [90.2 kB] Get:30 http://mirror-ubc.debian.org/debian/ jessie/main libbz2-1.0 amd64 1.0.6-7+b3 [43.5 kB] Get:31 http://mirror-ubc.debian.org/debian/ jessie/main libsepol1 amd64 2.3-2 [127 kB] Get:32 http://mirror-ubc.debian.org/debian/ jessie/main libustr-1.0-1 amd64 1.0.4-3+b2 [79.6 kB] Get:33 http://mirror-ubc.debian.org/debian/ jessie/main libpam-modules-bin amd64 1.1.8-3.1+deb8u2+b1 [104 kB] Get:34 http://mirror-ubc.debian.org/debian/ jessie/main libpam-modules amd64 1.1.8-3.1+deb8u2+b1 [307 kB] Get:35 http://mirror-ubc.debian.org/debian/ jessie/main sensible-utils all 0.0.9+deb8u1 [10.9 kB] Get:36 http://mirror-ubc.debian.org/debian/ jessie/main debianutils amd64 4.4+b1 [99.1 kB] Get:37 http://mirror-ubc.debian.org/debian/ jessie/main passwd amd64 1:4.2-3+deb8u4 [971 kB] Get:38 http://mirror-ubc.debian.org/debian/ jessie/main libuuid1 amd64 2.25.2-6 [64.7 kB] Get:39 http://mirror-ubc.debian.org/debian/ jessie/main libblkid1 amd64 2.25.2-6 [156 kB] Get:40 http://mirror-ubc.debian.org/debian/ jessie/main libmount1 amd64 2.25.2-6 [164 kB] Get:41 http://mirror-ubc.debian.org/debian/ jessie/main libsmartcols1 amd64 2.25.2-6 [110 kB] Get:42 http://mirror-ubc.debian.org/debian/ jessie/main mount amd64 2.25.2-6 [168 kB] Get:43 http://mirror-ubc.debian.org/debian/ jessie/main lsb-base all 4.1+Debian13+nmu1 [26.7 kB] Get:44 http://mirror-ubc.debian.org/debian/ jessie/main coreutils amd64 8.23-4 [2727 kB] Get:45 http://mirror-ubc.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:46 http://mirror-ubc.debian.org/debian/ jessie/main ifupdown amd64 0.7.53.1 [67.2 kB] Get:47 http://mirror-ubc.debian.org/debian/ jessie/main initscripts amd64 2.88dsf-59 [87.2 kB] Get:48 http://mirror-ubc.debian.org/debian/ jessie/main perl-doc all 5.20.2-3+deb8u11 [7347 kB] Get:49 http://mirror-ubc.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:50 http://mirror-ubc.debian.org/debian/ jessie/main libio-socket-ip-perl all 0.32-1 [28.1 kB] Get:51 http://mirror-ubc.debian.org/debian/ jessie/main libsocket-perl amd64 2.016-1 [37.2 kB] Get:52 http://mirror-ubc.debian.org/debian/ jessie/main libapr1 amd64 1.5.1-3 [95.3 kB] Get:53 http://mirror-ubc.debian.org/debian/ jessie/main libaprutil1-ldap amd64 1.5.4-1 [17.2 kB] Get:54 http://mirror-ubc.debian.org/debian/ jessie/main libaprutil1-dbd-sqlite3 amd64 1.5.4-1 [19.1 kB] Get:55 http://mirror-ubc.debian.org/debian/ jessie/main libaprutil1 amd64 1.5.4-1 [86.2 kB] Get:56 http://mirror-ubc.debian.org/debian/ jessie/main liblua5.1-0 amd64 5.1.5-7.1 [108 kB] Get:57 http://mirror-ubc.debian.org/debian/ jessie/main apache2-utils amd64 2.4.10-10+deb8u12 [196 kB] Get:58 http://mirror-ubc.debian.org/debian/ jessie/main libapache2-mod-perl2 amd64 2.0.9~1624218-2+deb8u2 [903 kB] Get:59 http://mirror-ubc.debian.org/debian/ jessie/main libapache2-reload-perl all 0.12-3 [17.3 kB] Get:60 http://mirror-ubc.debian.org/debian/ jessie/main apache2.2-common amd64 2.4.10-10+deb8u12 [126 kB] Get:61 http://mirror-ubc.debian.org/debian/ jessie/main apache2-data all 2.4.10-10+deb8u12 [163 kB] Get:62 http://mirror-ubc.debian.org/debian/ jessie/main apache2 amd64 2.4.10-10+deb8u12 [208 kB] Get:63 http://mirror-ubc.debian.org/debian/ jessie/main apache2-mpm-worker amd64 2.4.10-10+deb8u12 [1522 B] Get:64 http://mirror-ubc.debian.org/debian/ jessie/main apache2.2-bin amd64 2.4.10-10+deb8u12 [1702 B] Get:65 http://mirror-ubc.debian.org/debian/ jessie/main apache2-bin amd64 2.4.10-10+deb8u12 [1042 kB] Get:66 http://mirror-ubc.debian.org/debian/ jessie/main libperl5.20 amd64 5.20.2-3+deb8u11 [1362 B] Get:67 http://mirror-ubc.debian.org/debian/ jessie/main libtext-charwidth-perl amd64 0.04-7+b3 [10.7 kB] Get:68 http://mirror-ubc.debian.org/debian/ jessie/main libpackage-stash-xs-perl amd64 0.28-2+b1 [18.8 kB] Get:69 http://mirror-ubc.debian.org/debian/ jessie/main liblist-moreutils-perl amd64 0.33-2+b1 [44.4 kB] Get:70 http://mirror-ubc.debian.org/debian/ jessie/main libclone-perl amd64 0.37-1+b1 [14.2 kB] Get:71 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-libyaml-perl amd64 0.41-6 [67.0 kB] Get:72 http://mirror-ubc.debian.org/debian/ jessie/main libbit-vector-perl amd64 7.3-1+b2 [146 kB] Get:73 http://mirror-ubc.debian.org/debian/ jessie/main libdate-calc-xs-perl amd64 6.3-2 [54.0 kB] Get:74 http://mirror-ubc.debian.org/debian/ jessie/main libclass-load-perl all 0.22-1 [15.8 kB] Get:75 http://mirror-ubc.debian.org/debian/ jessie/main libclass-load-xs-perl amd64 0.08-1+b1 [15.0 kB] Get:76 http://mirror-ubc.debian.org/debian/ jessie/main libsub-name-perl amd64 0.12-1 [12.1 kB] Get:77 http://mirror-ubc.debian.org/debian/ jessie/main libio-pty-perl amd64 1:1.08-1+b4 [35.8 kB] Get:78 http://mirror-ubc.debian.org/debian/ jessie/main libipc-sharelite-perl amd64 0.17-3+b2 [24.9 kB] Get:79 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:80 http://mirror-ubc.debian.org/debian/ jessie/main libdbd-sqlite3-perl amd64 1.44-1 [156 kB] Get:81 http://mirror-ubc.debian.org/debian/ jessie/main libbsd-resource-perl amd64 1.2907-1+b2 [33.1 kB] Get:82 http://mirror-ubc.debian.org/debian/ jessie/main perl-base amd64 5.20.2-3+deb8u11 [1230 kB] Get:83 http://mirror-ubc.debian.org/debian/ jessie/main liblocale-gettext-perl amd64 1.05-8+b1 [19.0 kB] Get:84 http://mirror-ubc.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:85 http://mirror-ubc.debian.org/debian/ jessie/main libsub-identify-perl amd64 0.08-1 [11.2 kB] Get:86 http://mirror-ubc.debian.org/debian/ jessie/main libxml-libxslt-perl amd64 1.92-1+b1 [47.7 kB] Get:87 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-diff-xs-perl amd64 0.04-3+b1 [12.2 kB] Get:88 http://mirror-ubc.debian.org/debian/ jessie/main ttf-dejavu-core all 2.34-1 [30.7 kB] Get:89 http://mirror-ubc.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:90 http://mirror-ubc.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:91 http://mirror-ubc.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:92 http://mirror-ubc.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:93 http://mirror-ubc.debian.org/debian/ jessie/main perl-tk amd64 1:804.032-3+b3 [2031 kB] Get:94 http://mirror-ubc.debian.org/debian/ jessie/main libdbd-mysql-perl amd64 4.028-2+deb8u2 [119 kB] Get:95 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-syck-perl amd64 1.27-2+b2 [80.5 kB] Get:96 http://mirror-ubc.debian.org/debian/ jessie/main libtext-iconv-perl amd64 1.7-5+b2 [16.2 kB] Get:97 http://mirror-ubc.debian.org/debian/ jessie/main libcrypt-ssleay-perl amd64 0.58-1+b2 [45.8 kB] Get:98 http://mirror-ubc.debian.org/debian/ jessie/main libdbd-pg-perl amd64 3.4.2-1 [203 kB] Get:99 http://mirror-ubc.debian.org/debian/ jessie/main libclass-c3-xs-perl amd64 0.13-2+b1 [15.2 kB] Get:100 http://mirror-ubc.debian.org/debian/ jessie/main libconvert-binary-c-perl amd64 0.76-3+b2 [274 kB] Get:101 http://mirror-ubc.debian.org/debian/ jessie/main libossp-uuid-perl amd64 1.6.2-1.5+b1 [30.2 kB] Get:102 http://mirror-ubc.debian.org/debian/ jessie/main libparams-classify-perl amd64 0.013-4+b2 [24.1 kB] Get:103 http://mirror-ubc.debian.org/debian/ jessie/main libunicode-map-perl amd64 0.112-11+b1 [146 kB] Get:104 http://mirror-ubc.debian.org/debian/ jessie/main libace-perl amd64 1.92-3+b1 [310 kB] Get:105 http://mirror-ubc.debian.org/debian/ jessie/main libvariable-magic-perl amd64 0.55-1 [42.5 kB] Get:106 http://mirror-ubc.debian.org/debian/ jessie/main libbio-samtools-perl amd64 1.39-1+b1 [195 kB] Get:107 http://mirror-ubc.debian.org/debian/ jessie/main libfcgi-perl amd64 0.77-1+deb8u1 [39.0 kB] Get:108 http://mirror-ubc.debian.org/debian/ jessie/main libxml-parser-perl amd64 2.41-3 [215 kB] Get:109 http://mirror-ubc.debian.org/debian/ jessie/main libdbi-perl amd64 1.631-3+b1 [816 kB] Get:110 http://mirror-ubc.debian.org/debian/ jessie/main libparams-util-perl amd64 1.07-2+b1 [23.5 kB] Get:111 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-stacktrace-perl all 1.3400-1 [23.9 kB] Get:112 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-runtime-perl all 0.014-1 [17.9 kB] Get:113 http://mirror-ubc.debian.org/debian/ jessie/main libdist-checkconflicts-perl all 0.11-1 [10.8 kB] Get:114 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-runtime-conflicts-perl all 0.001-1 [6846 B] Get:115 http://mirror-ubc.debian.org/debian/ jessie/main libmoose-perl amd64 2.1213-1 [880 kB] Get:116 http://mirror-ubc.debian.org/debian/ jessie/main libxml-libxml-perl amd64 2.0116+dfsg-1+deb8u2 [365 kB] Get:117 http://mirror-ubc.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:118 http://mirror-ubc.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:119 http://mirror-ubc.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:120 http://mirror-ubc.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:121 http://mirror-ubc.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:122 http://mirror-ubc.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:123 http://mirror-ubc.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:124 http://mirror-ubc.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:125 http://mirror-ubc.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:126 http://mirror-ubc.debian.org/debian/ jessie/main libsasl2-modules amd64 2.1.26.dfsg1-13+deb8u1 [101 kB] Get:127 http://mirror-ubc.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:128 http://mirror-ubc.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:129 http://mirror-ubc.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:130 http://mirror-ubc.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u4 [218 kB] Get:131 http://mirror-ubc.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:132 http://mirror-ubc.debian.org/debian/ jessie/main libprocps3 amd64 2:3.3.9-9+deb8u1 [56.7 kB] Get:133 http://mirror-ubc.debian.org/debian/ jessie/main libtinfo5 amd64 5.9+20140913-1+deb8u3 [282 kB] Get:134 http://mirror-ubc.debian.org/debian/ jessie/main libncurses5 amd64 5.9+20140913-1+deb8u3 [96.6 kB] Get:135 http://mirror-ubc.debian.org/debian/ jessie/main libncursesw5 amd64 5.9+20140913-1+deb8u3 [123 kB] Get:136 http://mirror-ubc.debian.org/debian/ jessie/main procps amd64 2:3.3.9-9+deb8u1 [236 kB] Get:137 http://mirror-ubc.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:138 http://mirror-ubc.debian.org/debian/ jessie/main liblzma5 amd64 5.1.1alpha+20120614-2+b3 [194 kB] Get:139 http://mirror-ubc.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:140 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-symdump-perl all 2.12-1 [17.1 kB] Get:141 http://mirror-ubc.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:142 http://mirror-ubc.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:143 http://mirror-ubc.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:144 http://mirror-ubc.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:145 http://mirror-ubc.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:146 http://mirror-ubc.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:147 http://mirror-ubc.debian.org/debian/ jessie/main libsoap-lite-perl all 1.11-1 [272 kB] Get:148 http://mirror-ubc.debian.org/debian/ jessie/main libio-sessiondata-perl all 1.03-1 [5782 B] Get:149 http://mirror-ubc.debian.org/debian/ jessie/main libclass-inspector-perl all 1.28-1 [20.8 kB] Get:150 http://mirror-ubc.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:151 http://mirror-ubc.debian.org/debian/ jessie/main libconvert-binhex-perl all 1.123-2 [30.2 kB] Get:152 http://mirror-ubc.debian.org/debian/ jessie/main libnet-smtp-ssl-perl all 1.01-3 [5996 B] Get:153 http://mirror-ubc.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:154 http://mirror-ubc.debian.org/debian/ jessie/main libmailtools-perl all 2.13-1 [96.6 kB] Get:155 http://mirror-ubc.debian.org/debian/ jessie/main libmime-tools-perl all 5.505-1 [226 kB] Get:156 http://mirror-ubc.debian.org/debian/ jessie/main libossp-uuid16 amd64 1.6.2-1.5+b1 [38.0 kB] Get:157 http://mirror-ubc.debian.org/debian/ jessie/main libtask-weaken-perl all 1.04-1 [7990 B] Get:158 http://mirror-ubc.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u8 [664 kB] Get:159 http://mirror-ubc.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:160 http://mirror-ubc.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:161 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:162 http://mirror-ubc.debian.org/debian/ jessie/main libdate-calc-perl all 6.3-2 [194 kB] Get:163 http://mirror-ubc.debian.org/debian/ jessie/main libsub-install-perl all 0.928-1 [11.4 kB] Get:164 http://mirror-ubc.debian.org/debian/ jessie/main libdata-optlist-perl all 0.109-1 [10.6 kB] Get:165 http://mirror-ubc.debian.org/debian/ jessie/main libtry-tiny-perl all 0.22-1 [19.6 kB] Get:166 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:167 http://mirror-ubc.debian.org/debian/ jessie/main libsub-exporter-progressive-perl all 0.001011-1 [7748 B] Get:168 http://mirror-ubc.debian.org/debian/ jessie/main libb-hooks-endofscope-perl all 0.13-1 [15.4 kB] Get:169 http://mirror-ubc.debian.org/debian/ jessie/main libpackage-stash-perl all 0.37-1 [20.8 kB] Get:170 http://mirror-ubc.debian.org/debian/ jessie/main libnamespace-clean-perl all 0.25-1 [15.4 kB] Get:171 http://mirror-ubc.debian.org/debian/ jessie/main libgpg-error0 amd64 1.17-3 [94.9 kB] Get:172 http://mirror-ubc.debian.org/debian/ jessie/main libgcrypt20 amd64 1.6.3-2+deb8u4 [392 kB] Get:173 http://mirror-ubc.debian.org/debian/ jessie/main libxslt1.1 amd64 1.1.28-2+deb8u3 [232 kB] Get:174 http://mirror-ubc.debian.org/debian/ jessie/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:175 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-diff-perl all 1.19.02-3 [51.7 kB] Get:176 http://mirror-ubc.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:177 http://mirror-ubc.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:178 http://mirror-ubc.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:179 http://mirror-ubc.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:180 http://mirror-ubc.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:181 http://mirror-ubc.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:182 http://mirror-ubc.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:183 http://mirror-ubc.debian.org/debian/ jessie/main mysql-common all 5.5.60-0+deb8u1 [75.4 kB] Get:184 http://mirror-ubc.debian.org/debian/ jessie/main libmysqlclient18 amd64 5.5.60-0+deb8u1 [671 kB] Get:185 http://mirror-ubc.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:186 http://mirror-ubc.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:187 http://mirror-ubc.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:188 http://mirror-ubc.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:189 http://mirror-ubc.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:190 http://mirror-ubc.debian.org/debian/ jessie/main libcomerr2 amd64 1.42.12-2+b1 [60.7 kB] Get:191 http://mirror-ubc.debian.org/debian/ jessie/main libpq5 amd64 9.4.18-0+deb8u1 [128 kB] Get:192 http://mirror-ubc.debian.org/debian/ jessie/main liberror-perl all 0.17-1.1 [22.4 kB] Get:193 http://mirror-ubc.debian.org/debian/ jessie/main libcache-cache-perl all 1.07-2 [76.2 kB] Get:194 http://mirror-ubc.debian.org/debian/ jessie/main libbio-perl-perl all 1.6.924-1 [4763 kB] Get:195 http://mirror-ubc.debian.org/debian/ jessie/main bioperl all 1.6.924-1 [419 kB] Get:196 http://mirror-ubc.debian.org/debian/ jessie/main libio-string-perl all 1.08-3 [12.3 kB] Get:197 http://mirror-ubc.debian.org/debian/ jessie/main libdata-stag-perl all 0.13-1 [476 kB] Get:198 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-globaldestruction-perl all 0.13-1 [8676 B] Get:199 http://mirror-ubc.debian.org/debian/ jessie/main libsub-exporter-perl all 0.986-1 [49.9 kB] Get:200 http://mirror-ubc.debian.org/debian/ jessie/main libeval-closure-perl all 0.11-1 [11.6 kB] Get:201 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-c3-perl all 0.09-1 [11.9 kB] Get:202 http://mirror-ubc.debian.org/debian/ jessie/main libclass-c3-perl all 0.26-1 [22.9 kB] Get:203 http://mirror-ubc.debian.org/debian/ jessie/main libmro-compat-perl all 0.12-1 [13.2 kB] Get:204 http://mirror-ubc.debian.org/debian/ jessie/main debconf all 1.5.56+deb8u1 [167 kB] Get:205 http://mirror-ubc.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] Get:206 http://mirror-ubc.debian.org/debian/ jessie/main fonts-liberation all 1.07.4-1 [835 kB] Get:207 http://mirror-ubc.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:208 http://mirror-ubc.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:209 http://mirror-ubc.debian.org/debian/ jessie/main libvpx1 amd64 1.3.0-3+deb8u1 [600 kB] Get:210 http://mirror-ubc.debian.org/debian/ jessie/main libxpm4 amd64 1:3.5.12-0+deb8u1 [49.2 kB] Get:211 http://mirror-ubc.debian.org/debian/ jessie/main libgd3 amd64 2.1.0-5+deb8u11 [148 kB] Get:212 http://mirror-ubc.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:213 http://mirror-ubc.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:214 http://mirror-ubc.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:215 http://mirror-ubc.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:216 http://mirror-ubc.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:217 http://mirror-ubc.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:218 http://mirror-ubc.debian.org/debian/ jessie/main libltdl7 amd64 2.4.2-1.11+b1 [45.4 kB] Get:219 http://mirror-ubc.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:220 http://mirror-ubc.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:221 http://mirror-ubc.debian.org/debian/ jessie/main libpango1.0-0 amd64 1.36.8-3 [183 kB] Get:222 http://mirror-ubc.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:223 http://mirror-ubc.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:224 http://mirror-ubc.debian.org/debian/ jessie/main libpangox-1.0-0 amd64 0.0.2-5 [42.0 kB] Get:225 http://mirror-ubc.debian.org/debian/ jessie/main libpangoxft-1.0-0 amd64 1.36.8-3 [195 kB] Get:226 http://mirror-ubc.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:227 http://mirror-ubc.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:228 http://mirror-ubc.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:229 http://mirror-ubc.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:230 http://mirror-ubc.debian.org/debian/ jessie/main libpathplan4 amd64 2.38.0-7 [66.0 kB] Get:231 http://mirror-ubc.debian.org/debian/ jessie/main libxdot4 amd64 2.38.0-7 [58.7 kB] Get:232 http://mirror-ubc.debian.org/debian/ jessie/main graphviz amd64 2.38.0-7 [717 kB] Get:233 http://mirror-ubc.debian.org/debian/ jessie/main libgvc6 amd64 2.38.0-7 [637 kB] Get:234 http://mirror-ubc.debian.org/debian/ jessie/main libgvpr2 amd64 2.38.0-7 [212 kB] Get:235 http://mirror-ubc.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:236 http://mirror-ubc.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:237 http://mirror-ubc.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:238 http://mirror-ubc.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:239 http://mirror-ubc.debian.org/debian/ jessie/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:240 http://mirror-ubc.debian.org/debian/ jessie/main libxaw7 amd64 2:1.0.12-2+b1 [199 kB] Get:241 http://mirror-ubc.debian.org/debian/ jessie/main bash amd64 4.3-11+deb8u1 [1172 kB] Get:242 http://mirror-ubc.debian.org/debian/ jessie/main libsystemd0 amd64 215-17+deb8u7 [89.4 kB] Get:243 http://mirror-ubc.debian.org/debian/ jessie/main bsdutils amd64 1:2.25.2-6 [94.0 kB] Get:244 http://mirror-ubc.debian.org/debian/ jessie/main dash amd64 0.5.7-4+b1 [109 kB] Get:245 http://mirror-ubc.debian.org/debian/ jessie/main diffutils amd64 1:3.3-1+b1 [267 kB] Get:246 http://mirror-ubc.debian.org/debian/ jessie/main e2fslibs amd64 1.42.12-2+b1 [186 kB] Get:247 http://mirror-ubc.debian.org/debian/ jessie/main e2fsprogs amd64 1.42.12-2+b1 [750 kB] Get:248 http://mirror-ubc.debian.org/debian/ jessie/main findutils amd64 4.4.2-9+b1 [485 kB] Get:249 http://mirror-ubc.debian.org/debian/ jessie/main grep amd64 2.20-4.1 [325 kB] Get:250 http://mirror-ubc.debian.org/debian/ jessie/main gzip amd64 1.6-4 [111 kB] Get:251 http://mirror-ubc.debian.org/debian/ jessie/main hostname amd64 3.15 [13.9 kB] Get:252 http://mirror-ubc.debian.org/debian/ jessie/main libudev1 amd64 215-17+deb8u7 [57.8 kB] Get:253 http://mirror-ubc.debian.org/debian/ jessie/main tzdata all 2018e-0+deb8u1 [233 kB] Get:254 http://mirror-ubc.debian.org/debian/ jessie/main util-linux amd64 2.25.2-6 [845 kB] Get:255 http://mirror-ubc.debian.org/debian/ jessie/main libdevmapper1.02.1 amd64 2:1.02.90-2.2+deb8u1 [145 kB] Get:256 http://mirror-ubc.debian.org/debian/ jessie/main dmsetup amd64 2:1.02.90-2.2+deb8u1 [69.1 kB] Get:257 http://mirror-ubc.debian.org/debian/ jessie/main libcryptsetup4 amd64 2:1.6.6-5 [103 kB] Get:258 http://mirror-ubc.debian.org/debian/ jessie/main libkmod2 amd64 18-3 [46.2 kB] Get:259 http://mirror-ubc.debian.org/debian/ jessie/main libattr1 amd64 1:2.4.47-2 [18.3 kB] Get:260 http://mirror-ubc.debian.org/debian/ jessie/main libacl1 amd64 2.2.52-2 [27.9 kB] Get:261 http://mirror-ubc.debian.org/debian/ jessie/main udev amd64 215-17+deb8u7 [876 kB] Get:262 http://mirror-ubc.debian.org/debian/ jessie/main acl amd64 2.2.52-2 [58.4 kB] Get:263 http://mirror-ubc.debian.org/debian/ jessie/main libcap2 amd64 1:2.24-8 [15.3 kB] Get:264 http://mirror-ubc.debian.org/debian/ jessie/main libcap2-bin amd64 1:2.24-8 [25.4 kB] Get:265 http://mirror-ubc.debian.org/debian/ jessie/main systemd amd64 215-17+deb8u7 [2545 kB] Get:266 http://mirror-ubc.debian.org/debian/ jessie/main systemd-sysv amd64 215-17+deb8u7 [36.7 kB] Get:267 http://mirror-ubc.debian.org/debian/ jessie/main init amd64 1.22 [4674 B] Get:268 http://mirror-ubc.debian.org/debian/ jessie/main login amd64 1:4.2-3+deb8u4 [722 kB] Get:269 http://mirror-ubc.debian.org/debian/ jessie/main ncurses-bin amd64 5.9+20140913-1+deb8u3 [347 kB] Get:270 http://mirror-ubc.debian.org/debian/ jessie/main sed amd64 4.2.2-4+deb8u1 [243 kB] Get:271 http://mirror-ubc.debian.org/debian/ jessie/main tar amd64 1.27.1-2+deb8u1 [676 kB] Get:272 http://mirror-ubc.debian.org/debian/ jessie/main sysvinit amd64 2.88dsf-59 [99.9 kB] Get:273 http://mirror-ubc.debian.org/debian/ jessie/main libapt-pkg4.12 amd64 1.0.9.8.4 [792 kB] Get:274 http://mirror-ubc.debian.org/debian/ jessie/main gpgv amd64 1.4.18-7+deb8u5 [209 kB] Get:275 http://mirror-ubc.debian.org/debian/ jessie/main debian-archive-keyring all 2017.5~deb8u1 [56.7 kB] Get:276 http://mirror-ubc.debian.org/debian/ jessie/main readline-common all 6.3-8 [57.7 kB] Get:277 http://mirror-ubc.debian.org/debian/ jessie/main libreadline6 amd64 6.3-8+b3 [143 kB] Get:278 http://mirror-ubc.debian.org/debian/ jessie/main libusb-0.1-4 amd64 2:0.1.12-25 [21.9 kB] Get:279 http://mirror-ubc.debian.org/debian/ jessie/main gnupg amd64 1.4.18-7+deb8u5 [1150 kB] Get:280 http://mirror-ubc.debian.org/debian/ jessie/main apt amd64 1.0.9.8.4 [1109 kB] Get:281 http://mirror-ubc.debian.org/debian/ jessie/main libdebconfclient0 amd64 0.192 [46.2 kB] Get:282 http://mirror-ubc.debian.org/debian/ jessie/main base-passwd amd64 3.5.37 [64.5 kB] Get:283 http://mirror-ubc.debian.org/debian/ jessie/main ncurses-base all 5.9+20140913-1+deb8u3 [222 kB] Get:284 http://mirror-ubc.debian.org/debian/ jessie/main libslang2 amd64 2.3.0-2 [491 kB] Get:285 http://mirror-ubc.debian.org/debian/ jessie/main libss2 amd64 1.42.12-2+b1 [65.0 kB] Get:286 http://mirror-ubc.debian.org/debian/ jessie/main libgpm2 amd64 1.20.4-6.1+b2 [34.0 kB] Get:287 http://mirror-ubc.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:288 http://mirror-ubc.debian.org/debian/ jessie/main file amd64 1:5.22+15-2+deb8u4 [60.5 kB] Get:289 http://mirror-ubc.debian.org/debian/ jessie/main libmagic1 amd64 1:5.22+15-2+deb8u4 [250 kB] Get:290 http://mirror-ubc.debian.org/debian/ jessie/main libpython2.7-minimal amd64 2.7.9-2+deb8u1 [378 kB] Get:291 http://mirror-ubc.debian.org/debian/ jessie/main python2.7-minimal amd64 2.7.9-2+deb8u1 [1401 kB] Get:292 http://mirror-ubc.debian.org/debian/ jessie/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:293 http://mirror-ubc.debian.org/debian/ jessie/main libpython2.7-stdlib amd64 2.7.9-2+deb8u1 [1847 kB] Get:294 http://mirror-ubc.debian.org/debian/ jessie/main python2.7 amd64 2.7.9-2+deb8u1 [252 kB] Get:295 http://mirror-ubc.debian.org/debian/ jessie/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:296 http://mirror-ubc.debian.org/debian/ jessie/main python amd64 2.7.9-1 [151 kB] Get:297 http://mirror-ubc.debian.org/debian/ jessie/main fonts-droid all 1:4.4.4r2-6 [3729 kB] Get:298 http://mirror-ubc.debian.org/debian/ jessie/main libavahi-common-data amd64 0.6.31-5 [98.6 kB] Get:299 http://mirror-ubc.debian.org/debian/ jessie/main libavahi-common3 amd64 0.6.31-5 [51.1 kB] Get:300 http://mirror-ubc.debian.org/debian/ jessie/main libdbus-1-3 amd64 1.8.22-0+deb8u1 [170 kB] Get:301 http://mirror-ubc.debian.org/debian/ jessie/main libavahi-client3 amd64 0.6.31-5 [54.4 kB] Get:302 http://mirror-ubc.debian.org/debian/ jessie/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:303 http://mirror-ubc.debian.org/debian/ jessie/main libcap-ng0 amd64 0.7.4-2 [13.2 kB] Get:304 http://mirror-ubc.debian.org/debian/ jessie/main libcupsfilters1 amd64 1.0.61-5+deb8u3 [106 kB] Get:305 http://mirror-ubc.debian.org/debian/ jessie/main libcupsimage2 amd64 1.7.5-11+deb8u2 [117 kB] Get:306 http://mirror-ubc.debian.org/debian/ jessie/main libcups2 amd64 1.7.5-11+deb8u2 [284 kB] Get:307 http://mirror-ubc.debian.org/debian/ jessie/main libisc-export95 amd64 1:9.9.5.dfsg-9+deb8u15 [141 kB] Get:308 http://mirror-ubc.debian.org/debian/ jessie/main libdns-export100 amd64 1:9.9.5.dfsg-9+deb8u15 [457 kB] Get:309 http://mirror-ubc.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10+deb8u1 [37.8 kB] Get:310 http://mirror-ubc.debian.org/debian/ jessie/main libijs-0.35 amd64 0.35-10 [20.0 kB] Get:311 http://mirror-ubc.debian.org/debian/ jessie/main libisccfg-export90 amd64 1:9.9.5.dfsg-9+deb8u15 [41.5 kB] Get:312 http://mirror-ubc.debian.org/debian/ jessie/main libirs-export91 amd64 1:9.9.5.dfsg-9+deb8u15 [39.2 kB] Get:313 http://mirror-ubc.debian.org/debian/ jessie/main libjasper1 amd64 1.900.1-debian1-2.4+deb8u3 [134 kB] Get:314 http://mirror-ubc.debian.org/debian/ jessie/main liblcms2-2 amd64 2.6-3+deb8u1 [141 kB] Get:315 http://mirror-ubc.debian.org/debian/ jessie/main libncbi6 amd64 6.1.20120620-8 [3769 kB] Get:316 http://mirror-ubc.debian.org/debian/ jessie/main ncbi-data all 6.1.20120620-8 [3320 kB] Get:317 http://mirror-ubc.debian.org/debian/ jessie/main libpam-runtime all 1.1.8-3.1+deb8u2 [212 kB] Get:318 http://mirror-ubc.debian.org/debian/ jessie/main dbus amd64 1.8.22-0+deb8u1 [292 kB] Get:319 http://mirror-ubc.debian.org/debian/ jessie/main libpam-systemd amd64 215-17+deb8u7 [126 kB] Get:320 http://mirror-ubc.debian.org/debian/ jessie/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:321 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-0-2 amd64 0.1.6-3 [50.4 kB] Get:322 http://mirror-ubc.debian.org/debian/ jessie/main poppler-data all 0.4.7-1 [1491 kB] Get:323 http://mirror-ubc.debian.org/debian/ jessie/main libsystemd-login0 amd64 215-17+deb8u7 [49.8 kB] Get:324 http://mirror-ubc.debian.org/debian/ jessie/main multiarch-support amd64 2.19-18+deb8u10 [181 kB] Get:325 http://mirror-ubc.debian.org/debian/ jessie/main isc-dhcp-common amd64 4.3.1-6+deb8u3 [211 kB] Get:326 http://mirror-ubc.debian.org/debian/ jessie/main isc-dhcp-client amd64 4.3.1-6+deb8u3 [250 kB] Get:327 http://mirror-ubc.debian.org/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1 [67.6 kB] Get:328 http://mirror-ubc.debian.org/debian/ jessie/main debconf-i18n all 1.5.56+deb8u1 [206 kB] Get:329 http://mirror-ubc.debian.org/debian/ jessie/main krb5-locales all 1.12.1+dfsg-19+deb8u4 [2649 kB] Get:330 http://mirror-ubc.debian.org/debian/ jessie/main libclass-isa-perl all 0.36-5 [10.1 kB] Get:331 http://mirror-ubc.debian.org/debian/ jessie/main libswitch-perl all 2.17-2 [20.5 kB] Get:332 http://mirror-ubc.debian.org/debian/ jessie/main xz-utils amd64 5.1.1alpha+20120614-2+b3 [221 kB] Get:333 http://mirror-ubc.debian.org/debian/ jessie/main amap-align amd64 2.2-4 [132 kB] Get:334 http://mirror-ubc.debian.org/debian/ jessie/main bedtools amd64 2.21.0-1 [608 kB] Get:335 http://mirror-ubc.debian.org/debian/ jessie/main bioperl-run all 1.6.9-2 [44.0 kB] Get:336 http://mirror-ubc.debian.org/debian/ jessie/main libbio-perl-run-perl all 1.6.9-2 [753 kB] Get:337 http://mirror-ubc.debian.org/debian/ jessie/main blast2 amd64 1:2.2.26.20120620-8 [559 kB] Get:338 http://mirror-ubc.debian.org/debian/ jessie/main bwa amd64 0.7.10-1 [169 kB] Get:339 http://mirror-ubc.debian.org/debian/ jessie/main libargtable2-0 amd64 12-1.1 [17.2 kB] Get:340 http://mirror-ubc.debian.org/debian/ jessie/main clustalo amd64 1.2.1-1 [251 kB] Get:341 http://mirror-ubc.debian.org/debian/ jessie/main clustalw amd64 2.1+lgpl-4 [276 kB] Get:342 http://mirror-ubc.debian.org/debian/ jessie/main dialign amd64 2.2.1-7 [135 kB] Get:343 http://mirror-ubc.debian.org/debian/ jessie/main dialign-tx-data all 1.0.2-7 [880 kB] Get:344 http://mirror-ubc.debian.org/debian/ jessie/main dialign-tx amd64 1.0.2-7 [83.0 kB] Get:345 http://mirror-ubc.debian.org/debian/ jessie/main libhpdf-2.2.1 amd64 2.2.1-1.1 [322 kB] Get:346 http://mirror-ubc.debian.org/debian/ jessie/main emboss amd64 6.6.0+dfsg-1 [1023 kB] Get:347 http://mirror-ubc.debian.org/debian/ jessie/main emboss-lib amd64 6.6.0+dfsg-1 [3102 kB] Get:348 http://mirror-ubc.debian.org/debian/ jessie/main emboss-data all 6.6.0+dfsg-1 [60.8 MB] Get:349 http://mirror-ubc.debian.org/debian/ jessie/main libjbig2dec0 amd64 0.13-4~deb8u2 [60.2 kB] Get:350 http://mirror-ubc.debian.org/debian/ jessie/main ghostscript amd64 9.06~dfsg-2+deb8u7 [85.1 kB] Get:351 http://mirror-ubc.debian.org/debian/ jessie/main libgs9 amd64 9.06~dfsg-2+deb8u7 [1918 kB] Get:352 http://mirror-ubc.debian.org/debian/ jessie/main libgs9-common all 9.06~dfsg-2+deb8u7 [1981 kB] Get:353 http://mirror-ubc.debian.org/debian/ jessie/main hmmer amd64 3.1b1-3 [1026 kB] Get:354 http://mirror-ubc.debian.org/debian/ jessie/main infernal amd64 1.1.1-2 [1862 kB] Get:355 http://mirror-ubc.debian.org/debian/ jessie/main javascript-common all 11 [6120 B] Get:356 http://mirror-ubc.debian.org/debian/ jessie/main libapache-dbi-perl all 1.12-1 [54.6 kB] Get:357 http://mirror-ubc.debian.org/debian/ jessie/main libarchive-extract-perl all 0.72-1 [24.8 kB] Get:358 http://mirror-ubc.debian.org/debian/ jessie/main libclass-method-modifiers-perl all 2.11-1 [18.5 kB] Get:359 http://mirror-ubc.debian.org/debian/ jessie/main libimport-into-perl all 1.002004-1 [11.5 kB] Get:360 http://mirror-ubc.debian.org/debian/ jessie/main librole-tiny-perl all 1.003004-1 [19.4 kB] Get:361 http://mirror-ubc.debian.org/debian/ jessie/main libstrictures-perl all 1.005005-1 [13.5 kB] Get:362 http://mirror-ubc.debian.org/debian/ jessie/main libmoo-perl all 1.006001-1 [62.7 kB] Get:363 http://mirror-ubc.debian.org/debian/ jessie/main libexporter-tiny-perl all 0.038-2 [28.7 kB] Get:364 http://mirror-ubc.debian.org/debian/ jessie/main libtype-tiny-perl all 1.000004-1 [269 kB] Get:365 http://mirror-ubc.debian.org/debian/ jessie/main libarray-compare-perl all 2.11-1 [14.2 kB] Get:366 http://mirror-ubc.debian.org/debian/ jessie/main libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:367 http://mirror-ubc.debian.org/debian/ jessie/main libb-hooks-op-check-perl amd64 0.19-2+b1 [11.3 kB] Get:368 http://mirror-ubc.debian.org/debian/ jessie/main liblexical-sealrequirehints-perl amd64 0.007-1+b2 [14.4 kB] Get:369 http://mirror-ubc.debian.org/debian/ jessie/main libbareword-filehandles-perl amd64 0.003-1+b2 [8922 B] Get:370 http://mirror-ubc.debian.org/debian/ jessie/main libbio-asn1-entrezgene-perl all 1.700-1 [40.9 kB] Get:371 http://mirror-ubc.debian.org/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213 kB] Get:372 http://mirror-ubc.debian.org/debian/ jessie/main libcgi-fast-perl all 1:2.04-1 [10.9 kB] Get:373 http://mirror-ubc.debian.org/debian/ jessie/main libclass-tiny-perl all 1.000-1 [17.8 kB] Get:374 http://mirror-ubc.debian.org/debian/ jessie/main libclass-xsaccessor-perl amd64 1.19-2+b4 [39.0 kB] Get:375 http://mirror-ubc.debian.org/debian/ jessie/main libcpan-meta-perl all 2.142690-1 [125 kB] Get:376 http://mirror-ubc.debian.org/debian/ jessie/main libcrypt-rc4-perl all 2.02-2 [8150 B] Get:377 http://mirror-ubc.debian.org/debian/ jessie/main libdata-section-perl all 0.200006-1 [13.4 kB] Get:378 http://mirror-ubc.debian.org/debian/ jessie/main libdate-manip-perl all 6.47-1 [923 kB] Get:379 http://mirror-ubc.debian.org/debian/ jessie/main libpadwalker-perl amd64 1.98-1+b1 [20.7 kB] Get:380 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-caller-perl amd64 2.06-1+b2 [12.7 kB] Get:381 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-lexalias-perl amd64 0.05-1+b2 [9686 B] Get:382 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-partialdump-perl all 0.17-1 [14.5 kB] Get:383 http://mirror-ubc.debian.org/debian/ jessie/main libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:384 http://mirror-ubc.debian.org/debian/ jessie/main libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:385 http://mirror-ubc.debian.org/debian/ jessie/main libglib2.0-data all 2.42.1-1 [2173 kB] Get:386 http://mirror-ubc.debian.org/debian/ jessie/main libgraph-perl all 1:0.96-1.1 [126 kB] Get:387 http://mirror-ubc.debian.org/debian/ jessie/main libipc-run-perl all 0.92-1+deb8u1 [101 kB] Get:388 http://mirror-ubc.debian.org/debian/ jessie/main libxml-twig-perl all 1:3.48-1 [178 kB] Get:389 http://mirror-ubc.debian.org/debian/ jessie/main libgraphviz-perl all 2.16-1 [111 kB] Get:390 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-format-perl all 2.11-1 [43.1 kB] Get:391 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-tableextract-perl all 2.11-1 [32.0 kB] Get:392 http://mirror-ubc.debian.org/debian/ jessie/main libindirect-perl amd64 0.33-1 [26.4 kB] Get:393 http://mirror-ubc.debian.org/debian/ jessie/main libjs-jquery all 1.7.2+dfsg-3.2 [97.5 kB] Get:394 http://mirror-ubc.debian.org/debian/ jessie/main liblog-message-perl all 0.8-1 [26.0 kB] Get:395 http://mirror-ubc.debian.org/debian/ jessie/main liblog-message-simple-perl all 0.10-2 [8126 B] Get:396 http://mirror-ubc.debian.org/debian/ jessie/main libmath-spline-perl all 0.02-1 [7992 B] Get:397 http://mirror-ubc.debian.org/debian/ jessie/main libmldbm-perl all 2.05-1 [18.3 kB] Get:398 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-build-perl all 0.421000-2+deb8u1 [265 kB] Get:399 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-pluggable-perl all 5.1-1 [25.0 kB] Get:400 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-signature-perl all 0.73-1+deb8u2 [30.4 kB] Get:401 http://mirror-ubc.debian.org/debian/ jessie/main libmultidimensional-perl amd64 0.010-1+b2 [8506 B] Get:402 http://mirror-ubc.debian.org/debian/ jessie/main libpackage-constants-perl all 0.04-1 [5820 B] Get:403 http://mirror-ubc.debian.org/debian/ jessie/main libpam-cap amd64 1:2.24-8 [12.5 kB] Get:404 http://mirror-ubc.debian.org/debian/ jessie/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:405 http://mirror-ubc.debian.org/debian/ jessie/main libpod-latex-perl all 0.61-1 [34.7 kB] Get:406 http://mirror-ubc.debian.org/debian/ jessie/main libregexp-common-perl all 2013031301-1 [173 kB] Get:407 http://mirror-ubc.debian.org/debian/ jessie/main libpod-readme-perl all 0.11-1 [15.3 kB] Get:408 http://mirror-ubc.debian.org/debian/ jessie/main libtext-template-perl all 1.46-1 [53.1 kB] Get:409 http://mirror-ubc.debian.org/debian/ jessie/main libsoftware-license-perl all 0.103010-3 [119 kB] Get:410 http://mirror-ubc.debian.org/debian/ jessie/main libsort-naturally-perl all 1.03-1 [13.9 kB] Get:411 http://mirror-ubc.debian.org/debian/ jessie/main libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:412 http://mirror-ubc.debian.org/debian/ jessie/main libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:413 http://mirror-ubc.debian.org/debian/ jessie/main libstatistics-descriptive-perl all 3.0607-1 [41.4 kB] Get:414 http://mirror-ubc.debian.org/debian/ jessie/main libsvg-perl all 2.59-1 [75.2 kB] Get:415 http://mirror-ubc.debian.org/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1 kB] Get:416 http://mirror-ubc.debian.org/debian/ jessie/main libtext-soundex-perl amd64 3.4-1+b2 [13.7 kB] Get:417 http://mirror-ubc.debian.org/debian/ jessie/main libtie-ixhash-perl all 1.23-1 [12.2 kB] Get:418 http://mirror-ubc.debian.org/debian/ jessie/main libtree-dagnode-perl all 1.22-1 [59.5 kB] Get:419 http://mirror-ubc.debian.org/debian/ jessie/main libtype-tiny-xs-perl amd64 0.010-1 [27.1 kB] Get:420 http://mirror-ubc.debian.org/debian/ jessie/main libxml-sax-writer-perl all 0.54-1 [23.4 kB] Get:421 http://mirror-ubc.debian.org/debian/ jessie/main libxml-writer-perl all 0.625-1 [29.7 kB] Get:422 http://mirror-ubc.debian.org/debian/ jessie/main libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:423 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-perl all 1.13-1 [69.7 kB] Get:424 http://mirror-ubc.debian.org/debian/ jessie/main mafft amd64 7.205-1 [775 kB] Get:425 http://mirror-ubc.debian.org/debian/ jessie/main mustang amd64 3.2.2-1 [112 kB] Get:426 http://mirror-ubc.debian.org/debian/ jessie/main ncbi-blast+ amd64 2.2.29-3 [7965 kB] Get:427 http://mirror-ubc.debian.org/debian/ jessie/main phyml amd64 2:20120412-2 [939 kB] Get:428 http://mirror-ubc.debian.org/debian/ jessie/main poa amd64 2.0+20060928-3 [50.8 kB] Get:429 http://mirror-ubc.debian.org/debian/ jessie/main prank amd64 0.0.140110-1 [327 kB] Get:430 http://mirror-ubc.debian.org/debian/ jessie/main primer3 amd64 2.3.6-1 [168 kB] Get:431 http://mirror-ubc.debian.org/debian/ jessie/main probalign amd64 1.4-3 [67.9 kB] Get:432 http://mirror-ubc.debian.org/debian/ jessie/main proda amd64 1.0-8 [58.3 kB] Get:433 http://mirror-ubc.debian.org/debian/ jessie/main psmisc amd64 22.21-2 [119 kB] Get:434 http://mirror-ubc.debian.org/debian/ jessie/main rename all 0.20-3 [12.4 kB] Get:435 http://mirror-ubc.debian.org/debian/ jessie/main rubygems-integration all 1.8 [4514 B] Get:436 http://mirror-ubc.debian.org/debian/ jessie/main libruby2.1 amd64 2.1.5-2+deb8u3 [3290 kB] Get:437 http://mirror-ubc.debian.org/debian/ jessie/main ruby2.1 amd64 2.1.5-2+deb8u3 [276 kB] Get:438 http://mirror-ubc.debian.org/debian/ jessie/main ruby all 1:2.1.5+deb8u2 [9688 B] Get:439 http://mirror-ubc.debian.org/debian/ jessie/main samtools amd64 0.1.19-1 [563 kB] Get:440 http://mirror-ubc.debian.org/debian/ jessie/main shared-mime-info amd64 1.3-1 [634 kB] Get:441 http://mirror-ubc.debian.org/debian/ jessie/main sim4 amd64 0.0.20121010-1 [49.8 kB] Get:442 http://mirror-ubc.debian.org/debian/ jessie/main ssl-cert all 1.0.35 [20.9 kB] Get:443 http://mirror-ubc.debian.org/debian/ jessie/main t-coffee amd64 11.00.8cbe486-1 [921 kB] Get:444 http://mirror-ubc.debian.org/debian/ jessie/main tigr-glimmer amd64 3.02-3 [276 kB] Get:445 http://mirror-ubc.debian.org/debian/ jessie/main tm-align amd64 20140601+dfsg-1 [49.7 kB] Get:446 http://mirror-ubc.debian.org/debian/ jessie/main wise-data all 2.4.1-17 [108 kB] Get:447 http://mirror-ubc.debian.org/debian/ jessie/main wise amd64 2.4.1-17 [961 kB] Get:448 http://mirror-ubc.debian.org/debian/ jessie/main xdg-user-dirs amd64 0.15-2 [52.1 kB] Get:449 http://mirror-ubc.debian.org/debian/ jessie/main bowtie amd64 1.1.1-2 [1369 kB] Get:450 http://mirror-ubc.debian.org/debian/ jessie/main libgd-perl amd64 2.53-1+b1 [180 kB] Get:451 http://mirror-ubc.debian.org/debian/ jessie/main libset-scalar-perl all 1.29-1 [35.3 kB] Get:452 http://mirror-ubc.debian.org/debian/ jessie/main lynx-cur amd64 2.8.9dev1-2+deb8u1 [1623 kB] Get:453 http://mirror-ubc.debian.org/debian/ jessie/main lynx all 2.8.9dev1-2+deb8u1 [232 kB] Get:454 http://mirror-ubc.debian.org/debian/ jessie/main ttf-liberation all 1.07.4-1 [9540 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 215 MB in 13s (16.4 MB/s) (Reading database ... 26452 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.19-18+deb8u10_amd64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.19-18+deb8u10) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. (Reading database ... 26455 files and directories currently installed.) Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.19-18+deb8u10_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.19-18+deb8u10) ... Installing new version of config file /etc/bindresvport.blacklist ... Installing new version of config file /etc/gai.conf ... dpkg: gcc-4.7-base:amd64: dependency problems, but removing anyway as you requested: libstdc++6:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgfortran3:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgcc1:amd64 depends on gcc-4.7-base (= 4.7.2-5). libquadmath0:amd64 depends on gcc-4.7-base (= 4.7.2-5). (Reading database ... 26445 files and directories currently installed.) Removing gcc-4.7-base:amd64 ... Selecting previously unselected package gcc-4.9-base:amd64. (Reading database ... 26436 files and directories currently installed.) Unpacking gcc-4.9-base:amd64 (from .../gcc-4.9-base_4.9.2-10+deb8u1_amd64.deb) ... Setting up gcc-4.9-base:amd64 (4.9.2-10+deb8u1) ... (Reading database ... 26445 files and directories currently installed.) Preparing to replace libstdc++6:amd64 4.7.2-5 (using .../libstdc++6_4.9.2-10+deb8u1_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.9.2-10+deb8u1) ... Processing triggers for libc-bin ... (Reading database ... 26458 files and directories currently installed.) Preparing to replace libgfortran3:amd64 4.7.2-5 (using .../libgfortran3_4.9.2-10+deb8u1_amd64.deb) ... Unpacking replacement libgfortran3:amd64 ... Preparing to replace libgcc1:amd64 1:4.7.2-5 (using .../libgcc1_1%3a4.9.2-10+deb8u1_amd64.deb) ... Unpacking replacement libgcc1:amd64 ... Setting up libgcc1:amd64 (1:4.9.2-10+deb8u1) ... Processing triggers for libc-bin ... (Reading database ... 26458 files and directories currently installed.) Preparing to replace libquadmath0:amd64 4.7.2-5 (using .../libquadmath0_4.9.2-10+deb8u1_amd64.deb) ... Unpacking replacement libquadmath0:amd64 ... (Reading database ... 26458 files and directories currently installed.) Removing libgd-gd2-perl ... Selecting previously unselected package libcdt5. (Reading database ... 26414 files and directories currently installed.) Unpacking libcdt5 (from .../libcdt5_2.38.0-7_amd64.deb) ... Selecting previously unselected package libcgraph6. Unpacking libcgraph6 (from .../libcgraph6_2.38.0-7_amd64.deb) ... Preparing to replace libexpat1:amd64 2.1.0-1+deb7u2 (using .../libexpat1_2.1.0-6+deb8u4_amd64.deb) ... Unpacking replacement libexpat1:amd64 ... Preparing to replace zlib1g:amd64 1:1.2.7.dfsg-13 (using .../zlib1g_1%3a1.2.8.dfsg-2+b1_amd64.deb) ... Unpacking replacement zlib1g:amd64 ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-2+b1) ... Processing triggers for libc-bin ... (Reading database ... 26427 files and directories currently installed.) Preparing to replace libpng12-0:amd64 1.2.49-1+deb7u2 (using .../libpng12-0_1.2.50-2+deb8u3_amd64.deb) ... Unpacking replacement libpng12-0:amd64 ... Preparing to replace libfreetype6:amd64 2.4.9-1.1+deb7u3 (using .../libfreetype6_2.5.2-3+deb8u2_amd64.deb) ... Unpacking replacement libfreetype6:amd64 ... Preparing to replace libpcre3:amd64 1:8.30-5 (using .../libpcre3_2%3a8.35-3.3+deb8u4_amd64.deb) ... Unpacking replacement libpcre3:amd64 ... Setting up libpcre3:amd64 (2:8.35-3.3+deb8u4) ... Processing triggers for libc-bin ... (Reading database ... 26428 files and directories currently installed.) Preparing to replace libselinux1:amd64 2.1.9-5 (using .../libselinux1_2.3-2_amd64.deb) ... Unpacking replacement libselinux1:amd64 ... Setting up libselinux1:amd64 (2.3-2) ... Processing triggers for libc-bin ... (Reading database ... 26426 files and directories currently installed.) Preparing to replace fontconfig 2.9.0-7.1 (using .../fontconfig_2.11.0-6.3+deb8u1_amd64.deb) ... Unpacking replacement fontconfig ... Preparing to replace dpkg 1.16.18 (using .../dpkg_1.17.27_amd64.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.17.27) ... Installing new version of config file /etc/cron.daily/dpkg ... Selecting previously unselected package libdb5.3:amd64. (Reading database ... 26419 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-9+deb8u1_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28-9+deb8u1) ... Setting up libdb5.3:amd64 (5.3.28-9+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 26425 files and directories currently installed.) Preparing to unpack .../iproute_1%3a3.16.0-2_all.deb ... Unpacking iproute (1:3.16.0-2) over (20120521-3+b3) ... dpkg: warning: unable to delete old directory '/etc/iproute2': Directory not empty Selecting previously unselected package iproute2. Preparing to unpack .../iproute2_3.16.0-2_amd64.deb ... Unpacking iproute2 (3.16.0-2) ... Preparing to unpack .../sysvinit-utils_2.88dsf-59_amd64.deb ... Unpacking sysvinit-utils (2.88dsf-59) over (2.88dsf-41+deb7u1) ... Selecting previously unselected package startpar. Preparing to unpack .../startpar_0.59-3_amd64.deb ... Unpacking startpar (0.59-3) ... Setting up startpar (0.59-3) ... Installing new version of config file /etc/init/startpar-bridge.conf ... 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Changing shell of daemon from /bin/sh to /usr/sbin/nologin Changing shell of bin from /bin/sh to /usr/sbin/nologin Changing shell of sys from /bin/sh to /usr/sbin/nologin Changing shell of games from /bin/sh to /usr/sbin/nologin Changing shell of man from /bin/sh to /usr/sbin/nologin Changing shell of lp from /bin/sh to /usr/sbin/nologin Changing shell of mail from /bin/sh to /usr/sbin/nologin Changing shell of news from /bin/sh to /usr/sbin/nologin Changing shell of uucp from /bin/sh to /usr/sbin/nologin Changing shell of proxy from /bin/sh to /usr/sbin/nologin Changing shell of www-data from /bin/sh to /usr/sbin/nologin Changing shell of backup from /bin/sh to /usr/sbin/nologin Changing shell of list from /bin/sh to /usr/sbin/nologin Changing shell of irc from /bin/sh to /usr/sbin/nologin Changing shell of gnats from /bin/sh to /usr/sbin/nologin Changing shell of nobody from /bin/sh to /usr/sbin/nologin 16 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 27180 files and directories currently installed.) 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Adding 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Adding 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Unpacking libpod-latex-perl (0.61-1) ... Selecting previously unselected package libregexp-common-perl. Preparing to unpack .../libregexp-common-perl_2013031301-1_all.deb ... Unpacking libregexp-common-perl (2013031301-1) ... Selecting previously unselected package libpod-readme-perl. Preparing to unpack .../libpod-readme-perl_0.11-1_all.deb ... Unpacking libpod-readme-perl (0.11-1) ... Selecting previously unselected package libtext-template-perl. Preparing to unpack .../libtext-template-perl_1.46-1_all.deb ... Unpacking libtext-template-perl (1.46-1) ... Selecting previously unselected package libsoftware-license-perl. Preparing to unpack .../libsoftware-license-perl_0.103010-3_all.deb ... Unpacking libsoftware-license-perl (0.103010-3) ... 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Preparing to unpack .../libtie-ixhash-perl_1.23-1_all.deb ... Unpacking libtie-ixhash-perl (1.23-1) over (1.21-2) ... Preparing to unpack .../libtree-dagnode-perl_1.22-1_all.deb ... Unpacking libtree-dagnode-perl (1.22-1) over (1.06-1) ... Selecting previously unselected package libtype-tiny-xs-perl. Preparing to unpack .../libtype-tiny-xs-perl_0.010-1_amd64.deb ... Unpacking libtype-tiny-xs-perl (0.010-1) ... Preparing to unpack .../libxml-sax-writer-perl_0.54-1_all.deb ... Unpacking libxml-sax-writer-perl (0.54-1) over (0.53-1) ... Preparing to unpack .../libxml-writer-perl_0.625-1_all.deb ... Unpacking libxml-writer-perl (0.625-1) over (0.615-1) ... Selecting previously unselected package libxmlrpc-lite-perl. Preparing to unpack .../libxmlrpc-lite-perl_0.717-1_all.deb ... Unpacking libxmlrpc-lite-perl (0.717-1) ... Preparing to unpack .../libyaml-perl_1.13-1_all.deb ... Unpacking libyaml-perl (1.13-1) over (0.81-1) ... Preparing to unpack .../mafft_7.205-1_amd64.deb ... Unpacking mafft (7.205-1) over (6.864-1) ... Selecting previously unselected package mustang. Preparing to unpack .../mustang_3.2.2-1_amd64.deb ... Unpacking mustang (3.2.2-1) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../ncbi-blast+_2.2.29-3_amd64.deb ... Unpacking ncbi-blast+ (2.2.29-3) ... Preparing to unpack .../phyml_2%3a20120412-2_amd64.deb ... Unpacking phyml (2:20120412-2) over (2:20110919-1) ... Selecting previously unselected package poa. Preparing to unpack .../poa_2.0+20060928-3_amd64.deb ... Unpacking poa (2.0+20060928-3) ... Selecting previously unselected package prank. Preparing to unpack .../prank_0.0.140110-1_amd64.deb ... Unpacking prank (0.0.140110-1) ... Preparing to unpack .../primer3_2.3.6-1_amd64.deb ... Unpacking primer3 (2.3.6-1) over (2.2.3-1) ... Selecting previously unselected package probalign. Preparing to unpack .../probalign_1.4-3_amd64.deb ... Unpacking probalign (1.4-3) ... Selecting previously unselected package proda. Preparing to unpack .../archives/proda_1.0-8_amd64.deb ... Unpacking proda (1.0-8) ... Preparing to unpack .../psmisc_22.21-2_amd64.deb ... Unpacking psmisc (22.21-2) over (22.19-1+deb7u1) ... Selecting previously unselected package rename. Preparing to unpack .../archives/rename_0.20-3_all.deb ... Unpacking rename (0.20-3) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../rubygems-integration_1.8_all.deb ... Unpacking rubygems-integration (1.8) ... Selecting previously unselected package libruby2.1:amd64. Preparing to unpack .../libruby2.1_2.1.5-2+deb8u3_amd64.deb ... Unpacking libruby2.1:amd64 (2.1.5-2+deb8u3) ... Selecting previously unselected package ruby2.1. Preparing to unpack .../ruby2.1_2.1.5-2+deb8u3_amd64.deb ... Unpacking ruby2.1 (2.1.5-2+deb8u3) ... Preparing to unpack .../ruby_1%3a2.1.5+deb8u2_all.deb ... Unpacking ruby (1:2.1.5+deb8u2) over (1:1.9.3) ... Preparing to unpack .../samtools_0.1.19-1_amd64.deb ... Unpacking samtools (0.1.19-1) over (0.1.18-1) ... Preparing to unpack .../shared-mime-info_1.3-1_amd64.deb ... Unpacking shared-mime-info (1.3-1) over (1.0-1+b1) ... Preparing to unpack .../sim4_0.0.20121010-1_amd64.deb ... Unpacking sim4 (0.0.20121010-1) over (0.0.20030921-3) ... Preparing to unpack .../ssl-cert_1.0.35_all.deb ... Unpacking ssl-cert (1.0.35) over (1.0.32+deb7u1) ... Preparing to unpack .../t-coffee_11.00.8cbe486-1_amd64.deb ... Unpacking t-coffee (11.00.8cbe486-1) over (9.02.r1228-2) ... Preparing to unpack .../tigr-glimmer_3.02-3_amd64.deb ... Unpacking tigr-glimmer (3.02-3) over (3.02-2) ... Preparing to unpack .../tm-align_20140601+dfsg-1_amd64.deb ... Unpacking tm-align (20140601+dfsg-1) over (20120507-1) ... Selecting previously unselected package wise-data. Preparing to unpack .../wise-data_2.4.1-17_all.deb ... Unpacking wise-data (2.4.1-17) ... Preparing to unpack .../wise_2.4.1-17_amd64.deb ... Unpacking wise (2.4.1-17) over (2.4.1-10) ... Selecting previously unselected package xdg-user-dirs. Preparing to unpack .../xdg-user-dirs_0.15-2_amd64.deb ... Unpacking xdg-user-dirs (0.15-2) ... Preparing to unpack .../bowtie_1.1.1-2_amd64.deb ... Unpacking bowtie (1.1.1-2) over (0.12.7-3) ... Selecting previously unselected package libgd-perl. Preparing to unpack .../libgd-perl_2.53-1+b1_amd64.deb ... Unpacking libgd-perl (2.53-1+b1) ... Preparing to unpack .../libset-scalar-perl_1.29-1_all.deb ... Unpacking libset-scalar-perl (1.29-1) over (1.25-1) ... Preparing to unpack .../lynx-cur_2.8.9dev1-2+deb8u1_amd64.deb ... Unpacking lynx-cur (2.8.9dev1-2+deb8u1) over (2.8.8dev.12-2) ... Preparing to unpack .../lynx_2.8.9dev1-2+deb8u1_all.deb ... Unpacking lynx (2.8.9dev1-2+deb8u1) over (2.8.8dev.12-2) ... Preparing to unpack .../ttf-liberation_1.07.4-1_all.deb ... Unpacking ttf-liberation (1.07.4-1) over (1.07.2-6) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libcdt5 (2.38.0-7) ... Setting up libcgraph6 (2.38.0-7) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up ucf (3.0030) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fonts-liberation (1.07.4-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Installing new version of config file /etc/fonts/conf.d/README ... Installing new version of config file /etc/fonts/fonts.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-autohint.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-no-sub-pixel.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-sub-pixel-bgr.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-sub-pixel-rgb.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-sub-pixel-vbgr.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-sub-pixel-vrgb.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-unhinted.conf ... Removing obsolete conffile /etc/fonts/conf.avail/11-lcdfilter-default.conf ... Removing obsolete conffile /etc/fonts/conf.avail/11-lcdfilter-legacy.conf ... Removing obsolete conffile /etc/fonts/conf.avail/11-lcdfilter-light.conf ... Removing obsolete conffile /etc/fonts/conf.avail/20-fix-globaladvance.conf ... Removing obsolete conffile /etc/fonts/conf.avail/20-unhint-small-vera.conf ... Removing obsolete conffile /etc/fonts/conf.avail/25-unhint-nonlatin.conf ... Removing obsolete conffile /etc/fonts/conf.avail/30-metric-aliases.conf ... Removing obsolete conffile /etc/fonts/conf.avail/30-urw-aliases.conf ... Removing obsolete conffile /etc/fonts/conf.avail/40-nonlatin.conf ... Removing obsolete conffile /etc/fonts/conf.avail/45-latin.conf ... Removing obsolete conffile /etc/fonts/conf.avail/49-sansserif.conf ... Removing obsolete conffile /etc/fonts/conf.avail/50-user.conf ... Removing obsolete conffile /etc/fonts/conf.avail/51-local.conf ... Removing obsolete conffile /etc/fonts/conf.avail/60-latin.conf ... Removing obsolete conffile /etc/fonts/conf.avail/65-fonts-persian.conf ... Removing obsolete conffile /etc/fonts/conf.avail/65-khmer.conf ... Removing obsolete conffile /etc/fonts/conf.avail/65-nonlatin.conf ... Removing obsolete conffile /etc/fonts/conf.avail/69-unifont.conf ... Removing obsolete conffile /etc/fonts/conf.avail/70-force-bitmaps.conf ... Removing obsolete conffile /etc/fonts/conf.avail/70-no-bitmaps.conf ... Removing obsolete conffile /etc/fonts/conf.avail/70-yes-bitmaps.conf ... Removing obsolete conffile /etc/fonts/conf.avail/80-delicious.conf ... Removing obsolete conffile /etc/fonts/conf.avail/90-synthetic.conf ... Removing obsolete conffile /etc/fonts/fonts.dtd ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up fontconfig (2.11.0-6.3+deb8u1) ... Regenerating fonts cache... done. Setting up iproute2 (3.16.0-2) ... Installing new version of config file /etc/iproute2/ematch_map ... Setting up iproute (1:3.16.0-2) ... Setting up netbase (5.3) ... Installing new version of config file /etc/protocols ... Installing new version of config file /etc/services ... Setting up ifupdown (0.7.53.1) ... Installing new version of config file /etc/init.d/networking ... Installing new version of config file /etc/init/network-interface-container.conf ... Installing new version of config file /etc/init/network-interface-security.conf ... Installing new version of config file /etc/init/network-interface.conf ... Installing new version of config file /etc/init/networking.conf ... Setting up perl-modules (5.20.2-3+deb8u11) ... Setting up libgdbm3:amd64 (1.8.3-13.1) ... Setting up perl (5.20.2-3+deb8u11) ... Setting up perl-doc (5.20.2-3+deb8u11) ... Setting up libsocket-perl (2.016-1) ... Setting up libio-socket-ip-perl (0.32-1) ... Setting up libapr1:amd64 (1.5.1-3) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Checking for services that may need to be restarted...done. Checking for services that may need to be restarted...done. Setting up libaprutil1:amd64 (1.5.4-1) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-6) ... Setting up libnettle4:amd64 (2.7.1-5+deb8u2) ... Setting up libhogweed2:amd64 (2.7.1-5+deb8u2) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u3) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Setting up libaprutil1-ldap:amd64 (1.5.4-1) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Setting up liblua5.1-0:amd64 (5.1.5-7.1) ... Setting up apache2-utils (2.4.10-10+deb8u12) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Setting up apache2-bin (2.4.10-10+deb8u12) ... Setting up libperl5.20 (5.20.2-3+deb8u11) ... Setting up libdevel-symdump-perl (2.12-1) ... Setting up liburi-perl (1.64-1) ... Setting up openssl (1.0.1t-1+deb8u8) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 39 added, 36 removed; done. Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libnet-http-perl (6.07-1) ... Setting up mime-support (3.58) ... Installing new version of config file /etc/mime.types ... Setting up apache2-data (2.4.10-10+deb8u12) ... Setting up apache2 (2.4.10-10+deb8u12) ... Installing new version of config file /etc/apache2/apache2.conf ... Installing new version of config file /etc/apache2/envvars ... Installing new version of config file /etc/apache2/mods-available/actions.conf ... Installing new version of config file /etc/apache2/mods-available/alias.conf ... Installing new version of config file /etc/apache2/mods-available/asis.load ... Installing new version of config file /etc/apache2/mods-available/auth_basic.load ... Installing new version of config file /etc/apache2/mods-available/auth_digest.load ... Installing new version of config file /etc/apache2/mods-available/authz_dbm.load ... Installing new version of config file /etc/apache2/mods-available/authz_groupfile.load ... Installing new version of config file /etc/apache2/mods-available/authz_host.load ... Installing new version of config file /etc/apache2/mods-available/authz_user.load ... Installing new version of config file /etc/apache2/mods-available/autoindex.conf ... Installing new version of config file /etc/apache2/mods-available/cgid.conf ... Installing new version of config file /etc/apache2/mods-available/dav_fs.conf ... Installing new version of config file /etc/apache2/mods-available/deflate.conf ... Installing new version of config file /etc/apache2/mods-available/deflate.load ... Installing new version of config file /etc/apache2/mods-available/dir.conf ... Installing new version of config file /etc/apache2/mods-available/include.load ... Installing new version of config file /etc/apache2/mods-available/info.conf ... Installing new version of config file /etc/apache2/mods-available/ldap.conf ... Installing new version of config file /etc/apache2/mods-available/mime.conf ... Installing new version of config file /etc/apache2/mods-available/mime_magic.conf ... Installing new version of config file /etc/apache2/mods-available/negotiation.conf ... Installing new version of config file /etc/apache2/mods-available/proxy.conf ... Installing new version of config file /etc/apache2/mods-available/proxy_balancer.conf ... Installing new version of config file /etc/apache2/mods-available/proxy_balancer.load ... Installing new version of config file /etc/apache2/mods-available/proxy_ftp.conf ... Installing new version of config file /etc/apache2/mods-available/reqtimeout.conf ... Installing new version of config file /etc/apache2/mods-available/setenvif.conf ... Installing new version of config file /etc/apache2/mods-available/ssl.conf ... Installing new version of config file /etc/apache2/mods-available/ssl.load ... Installing new version of config file /etc/apache2/mods-available/status.conf ... Installing new version of config file /etc/apache2/mods-available/userdir.conf ... Installing new version of config file /etc/apache2/ports.conf ... Installing new version of config file /etc/cron.daily/apache2 ... Installing new version of config file /etc/default/apache2 ... Installing new version of config file /etc/init.d/apache2 ... Installing new version of config file /etc/logrotate.d/apache2 ... Removing obsolete conffile /etc/apache2/mods-available/authz_default.load ... Removing obsolete conffile /etc/apache2/mods-available/authn_default.load ... Removing obsolete conffile /etc/apache2/mods-available/mem_cache.load ... Removing obsolete conffile /etc/apache2/mods-available/mem_cache.conf ... Removing obsolete conffile /etc/apache2/mods-available/authn_alias.load ... Removing obsolete conffile /etc/apache2/mods-available/cern_meta.load ... Removing obsolete conffile /etc/apache2/mods-available/disk_cache.load ... Removing obsolete conffile /etc/apache2/mods-available/disk_cache.conf ... Removing obsolete conffile /etc/apache2/mods-available/imagemap.load ... Removing obsolete directory /etc/apache2/conf.d Enabling module mpm_worker. Enabling module authn_core. disable obsolete module authz_default Enabling module authz_core. Enabling module filter. Enabling module access_compat. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. invoke-rc.d: policy-rc.d denied execution of restart. Setting up apache2.2-common (2.4.10-10+deb8u12) ... Setting up apache2-mpm-worker (2.4.10-10+deb8u12) ... Setting up apache2.2-bin (2.4.10-10+deb8u12) ... Setting up libtext-charwidth-perl (0.04-7+b3) ... Setting up libpackage-stash-xs-perl (0.28-2+b1) ... Setting up liblist-moreutils-perl (0.33-2+b1) ... Setting up libclone-perl (0.37-1+b1) ... Setting up libyaml-libyaml-perl (0.41-6) ... Setting up libbit-vector-perl (7.3-1+b2) ... Setting up libdate-calc-perl (6.3-2) ... Setting up libdate-calc-xs-perl (6.3-2) ... Setting up libparams-util-perl (1.07-2+b1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libdata-optlist-perl (0.109-1) ... Setting up libparams-classify-perl (0.013-4+b2) ... Setting up libmodule-runtime-perl (0.014-1) ... Setting up libtry-tiny-perl (0.22-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libsub-exporter-progressive-perl (0.001011-1) ... Setting up libvariable-magic-perl (0.55-1) ... Setting up libb-hooks-endofscope-perl (0.13-1) ... Setting up libpackage-stash-perl (0.37-1) ... Setting up libsub-identify-perl (0.08-1) ... Setting up libsub-name-perl (0.12-1) ... Setting up libnamespace-clean-perl (0.25-1) ... Setting up libclass-load-perl (0.22-1) ... Setting up libclass-load-xs-perl (0.08-1+b1) ... Setting up libio-pty-perl (1:1.08-1+b4) ... Setting up libipc-sharelite-perl (0.17-3+b2) ... Setting up libdbi-perl (1.631-3+b1) ... Setting up libdbd-sqlite3-perl (1.44-1) ... Setting up libbsd-resource-perl (1.2907-1+b2) ... Setting up liblocale-gettext-perl (1.05-8+b1) ... Setting up libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxslt-perl (1.92-1+b1) ... Setting up libalgorithm-diff-perl (1.19.02-3) ... Setting up libalgorithm-diff-xs-perl (0.04-3+b1) ... Setting up ttf-dejavu-core (2.34-1) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up perl-tk (1:804.032-3+b3) ... Setting up mysql-common (5.5.60-0+deb8u1) ... Installing new version of config file /etc/mysql/my.cnf ... Setting up libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Setting up libdbd-mysql-perl (4.028-2+deb8u2) ... Setting up libyaml-syck-perl (1.27-2+b2) ... Setting up libtext-iconv-perl (1.7-5+b2) ... Setting up libcrypt-ssleay-perl (0.58-1+b2) ... Setting up libkeyutils1:amd64 (1.5.9-5+b1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libpq5:amd64 (9.4.18-0+deb8u1) ... Setting up libdbd-pg-perl (3.4.2-1) ... Setting up libclass-c3-xs-perl (0.13-2+b1) ... Setting up libconvert-binary-c-perl (0.76-3+b2) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b1) ... Setting up libunicode-map-perl (0.112-11+b1) ... Setting up liberror-perl (0.17-1.1) ... Setting up libcache-cache-perl (1.07-2) ... Setting up libace-perl (1.92-3+b1) ... Setting up libio-string-perl (1.08-3) ... Setting up libdata-stag-perl (0.13-1) ... Setting up libbio-perl-perl (1.6.924-1) ... Setting up libbio-samtools-perl (1.39-1+b1) ... Setting up libfcgi-perl (0.77-1+deb8u1) ... Setting up libdevel-stacktrace-perl (1.3400-1) ... Setting up libdist-checkconflicts-perl (0.11-1) ... Setting up libmodule-runtime-conflicts-perl (0.001-1) ... Setting up libdevel-globaldestruction-perl (0.13-1) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up libeval-closure-perl (0.11-1) ... Setting up libalgorithm-c3-perl (0.09-1) ... Setting up libclass-c3-perl (0.26-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up libmoose-perl (2.1213-1) ... Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libclass-inspector-perl (1.28-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libconvert-binhex-perl (1.123-2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libnet-smtp-ssl-perl (1.01-3) ... Setting up libmailtools-perl (2.13-1) ... Setting up libmime-tools-perl (5.505-1) ... Setting up bioperl (1.6.924-1) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Setting up libvpx1:amd64 (1.3.0-3+deb8u1) ... Setting up libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Setting up libgd3:amd64 (2.1.0-5+deb8u11) ... Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxcb-render0:amd64 (1.10-3+b1) ... Setting up libxcb-shm0:amd64 (1.10-3+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Setting up libglib2.0-0:amd64 (2.42.1-1+b1) ... No schema files found: doing nothing. Setting up libltdl7:amd64 (2.4.2-1.11+b1) ... Setting up libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Setting up libharfbuzz0b:amd64 (0.9.35-2) ... Setting up libthai-data (0.1.21-1) ... Setting up libdatrie1:amd64 (0.2.8-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up libpango-1.0-0:amd64 (1.36.8-3) ... Setting up libpangoft2-1.0-0:amd64 (1.36.8-3) ... Setting up libpangocairo-1.0-0:amd64 (1.36.8-3) ... Setting up libpangox-1.0-0:amd64 (0.0.2-5) ... Setting up libpangoxft-1.0-0:amd64 (1.36.8-3) ... Setting up libpango1.0-0:amd64 (1.36.8-3) ... Setting up libpathplan4 (2.38.0-7) ... Setting up libxdot4 (2.38.0-7) ... Setting up libgvc6 (2.38.0-7) ... Setting up libgvpr2 (2.38.0-7) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libxaw7:amd64 (2:1.0.12-2+b1) ... Setting up graphviz (2.38.0-7) ... Setting up libgpm2:amd64 (1.20.4-6.1+b2) ... Setting up libidn11:amd64 (1.29-1+deb8u2) ... Setting up libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Setting up file (1:5.22+15-2+deb8u4) ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7 (2.7.9-2+deb8u1) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up fonts-droid (1:4.4.4r2-6) ... Removing obsolete conffile /etc/fonts/conf.avail/65-droid-sans-fonts.conf ... Setting up libavahi-common-data:amd64 (0.6.31-5) ... Setting up libavahi-common3:amd64 (0.6.31-5) ... Setting up libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Setting up libavahi-client3:amd64 (0.6.31-5) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libcap-ng0:amd64 (0.7.4-2) ... Setting up libcups2:amd64 (1.7.5-11+deb8u2) ... Setting up libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libgomp1:amd64 (4.9.2-10+deb8u1) ... Setting up libijs-0.35:amd64 (0.35-10) ... Setting up libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Setting up liblcms2-2:amd64 (2.6-3+deb8u1) ... Setting up ncbi-data (6.1.20120620-8) ... Setting up libncbi6:amd64 (6.1.20120620-8) ... Setting up dbus (1.8.22-0+deb8u1) ... Installing new version of config file /etc/dbus-1/session.conf ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libpam-systemd:amd64 (215-17+deb8u7) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Setting up libyaml-0-2:amd64 (0.1.6-3) ... Setting up poppler-data (0.4.7-1) ... Installing new version of config file /etc/ghostscript/cidfmap.d/90gs-cjk-resource-korea1.conf ... Setting up libsystemd-login0:amd64 (215-17+deb8u7) ... Setting up isc-dhcp-common (4.3.1-6+deb8u3) ... Setting up isc-dhcp-client (4.3.1-6+deb8u3) ... Setting up libxtables10 (1.4.21-2+b1) ... Setting up debconf-i18n (1.5.56+deb8u1) ... Setting up krb5-locales (1.12.1+dfsg-19+deb8u4) ... Setting up libclass-isa-perl (0.36-5) ... Setting up libswitch-perl (2.17-2) ... Setting up xz-utils (5.1.1alpha+20120614-2+b3) ... Setting up amap-align (2.2-4) ... Setting up bedtools (2.21.0-1) ... Setting up libbio-perl-run-perl (1.6.9-2) ... Setting up bioperl-run (1.6.9-2) ... Setting up blast2 (1:2.2.26.20120620-8) ... Setting up bwa (0.7.10-1) ... Setting up libargtable2-0 (12-1.1) ... Setting up clustalo (1.2.1-1) ... Setting up clustalw (2.1+lgpl-4) ... Setting up dialign (2.2.1-7) ... Setting up dialign-tx-data (1.0.2-7) ... Setting up dialign-tx (1.0.2-7) ... Setting up libhpdf-2.2.1 (2.2.1-1.1) ... Setting up emboss-lib (6.6.0+dfsg-1) ... Setting up emboss-data (6.6.0+dfsg-1) ... Setting up emboss (6.6.0+dfsg-1) ... Setting up libjbig2dec0 (0.13-4~deb8u2) ... Setting up libgs9-common (9.06~dfsg-2+deb8u7) ... Setting up hmmer (3.1b1-3) ... Setting up infernal (1.1.1-2) ... Setting up javascript-common (11) ... apache2_invoke: Enable configuration javascript-common invoke-rc.d: policy-rc.d denied execution of reload. Setting up libarchive-extract-perl (0.72-1) ... Setting up libclass-method-modifiers-perl (2.11-1) ... Setting up libimport-into-perl (1.002004-1) ... Setting up librole-tiny-perl (1.003004-1) ... Setting up libstrictures-perl (1.005005-1) ... Setting up libmoo-perl (1.006001-1) ... Setting up libexporter-tiny-perl (0.038-2) ... Setting up libtype-tiny-perl (1.000004-1) ... Setting up libarray-compare-perl (2.11-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libb-hooks-op-check-perl (0.19-2+b1) ... Setting up liblexical-sealrequirehints-perl (0.007-1+b2) ... Setting up libbareword-filehandles-perl (0.003-1+b2) ... Setting up libbio-asn1-entrezgene-perl (1.700-1) ... Setting up libcgi-pm-perl (4.09-1) ... Setting up libcgi-fast-perl (1:2.04-1) ... Setting up libclass-tiny-perl (1.000-1) ... Setting up libclass-xsaccessor-perl (1.19-2+b4) ... Setting up libcpan-meta-perl (2.142690-1) ... Setting up libcrypt-rc4-perl (2.02-2) ... Setting up libdata-section-perl (0.200006-1) ... Setting up libdate-manip-perl (6.47-1) ... Setting up libpadwalker-perl (1.98-1+b1) ... Setting up libdevel-caller-perl (2.06-1+b2) ... Setting up libdevel-lexalias-perl (0.05-1+b2) ... Setting up libdevel-partialdump-perl (0.17-1) ... Setting up libdigest-perl-md5-perl (1.9-1) ... Setting up libfile-slurp-tiny-perl (0.003-1) ... Setting up libglib2.0-data (2.42.1-1) ... Setting up libgraph-perl (1:0.96-1.1) ... Setting up libipc-run-perl (0.92-1+deb8u1) ... Setting up libhtml-format-perl (2.11-1) ... Setting up libhtml-tableextract-perl (2.11-1) ... Setting up libindirect-perl (0.33-1) ... Setting up libjs-jquery (1.7.2+dfsg-3.2) ... Setting up liblog-message-perl (0.8-1) ... Setting up liblog-message-simple-perl (0.10-2) ... Setting up libmath-spline-perl (0.02-1) ... Setting up libmldbm-perl (2.05-1) ... Setting up libmodule-build-perl (0.421000-2+deb8u1) ... Setting up libmodule-pluggable-perl (5.1-1) ... Setting up libmodule-signature-perl (0.73-1+deb8u2) ... Setting up libmultidimensional-perl (0.010-1+b2) ... Setting up libpackage-constants-perl (0.04-1) ... Setting up libpam-cap:amd64 (1:2.24-8) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpod-latex-perl (0.61-1) ... Setting up libregexp-common-perl (2013031301-1) ... Setting up libpod-readme-perl (0.11-1) ... Setting up libtext-template-perl (1.46-1) ... Setting up libsoftware-license-perl (0.103010-3) ... Setting up libsort-naturally-perl (1.03-1) ... Setting up libspreadsheet-writeexcel-perl (2.40-1) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1) ... Setting up libstatistics-descriptive-perl (3.0607-1) ... Setting up libsvg-perl (2.59-1) ... Setting up libterm-ui-perl (0.42-1) ... Setting up libtext-soundex-perl (3.4-1+b2) ... Setting up libtie-ixhash-perl (1.23-1) ... Setting up libtree-dagnode-perl (1.22-1) ... Setting up libtype-tiny-xs-perl (0.010-1) ... Setting up libxml-sax-writer-perl (0.54-1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libyaml-perl (1.13-1) ... Setting up mafft (7.205-1) ... Setting up mustang (3.2.2-1) ... Setting up ncbi-blast+ (2.2.29-3) ... Setting up phyml (2:20120412-2) ... Setting up poa (2.0+20060928-3) ... Setting up prank (0.0.140110-1) ... Setting up primer3 (2.3.6-1) ... Setting up probalign (1.4-3) ... Setting up proda (1.0-8) ... Setting up psmisc (22.21-2) ... Setting up rename (0.20-3) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up rubygems-integration (1.8) ... Setting up libruby2.1:amd64 (2.1.5-2+deb8u3) ... Setting up ruby2.1 (2.1.5-2+deb8u3) ... Setting up ruby (1:2.1.5+deb8u2) ... Setting up samtools (0.1.19-1) ... Setting up shared-mime-info (1.3-1) ... Setting up sim4 (0.0.20121010-1) ... Setting up ssl-cert (1.0.35) ... Setting up t-coffee (11.00.8cbe486-1) ... Setting up tigr-glimmer (3.02-3) ... Setting up tm-align (20140601+dfsg-1) ... Setting up wise-data (2.4.1-17) ... Setting up wise (2.4.1-17) ... Setting up xdg-user-dirs (0.15-2) ... Setting up bowtie (1.1.1-2) ... Setting up libgd-perl (2.53-1+b1) ... Setting up libset-scalar-perl (1.29-1) ... Setting up lynx-cur (2.8.9dev1-2+deb8u1) ... Installing new version of config file /etc/lynx-cur/lynx.cfg ... Setting up lynx (2.8.9dev1-2+deb8u1) ... Setting up ttf-liberation (1.07.4-1) ... Setting up libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Setting up libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Setting up libgs9 (9.06~dfsg-2+deb8u7) ... Setting up ghostscript (9.06~dfsg-2+deb8u7) ... Setting up libwww-perl (6.08-1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... apache2_invoke perl: already enabled invoke-rc.d: policy-rc.d denied execution of restart. Setting up libapache2-reload-perl (0.12-3) ... Setting up libxml-parser-perl (2.41-3) ... Setting up libsoap-lite-perl (1.11-1) ... Setting up libapache-dbi-perl (1.12-1) ... Setting up libxml-twig-perl (1:3.48-1) ... Setting up libgraphviz-perl (2.16-1) ... Setting up libxmlrpc-lite-perl (0.717-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. 2m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', '-yf', 'dist-upgrade'] 2m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m26.1s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 2m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'show', '--no-all-versions', 'libbio-samtools-perl'] 2m26.1s DUMP: Package: libbio-samtools-perl Source: libbio-samtools-perl (1.39-1) Version: 1.39-1+b1 Installed-Size: 588 Maintainer: Debian Perl Group Architecture: amd64 Depends: perl (>= 5.20.0-4), perlapi-5.20.0, libc6 (>= 2.14), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Description-en: Perl interface to SamTools library for DNA sequencing Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application. Description-md5: 73b654c3e7ee8120b5c9b0a3c60da326 Homepage: https://metacpan.org/release/Bio-SamTools/ Tag: devel::lang:perl, devel::library, implemented-in::c, implemented-in::perl, role::shared-lib Section: perl Priority: optional Filename: pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.39-1+b1_amd64.deb Size: 195056 MD5sum: 40b655589c2b7a4a3fe00e92b5deea8b SHA1: e6575390e8f3945548462f43a8873df275591482 SHA256: 2a9ffa5bc53086518f901d1402695efc26dd0e8af59eda87b5c2c22e44639c96 2m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'show', '--no-all-versions', 'libbio-samtools-perl'] 2m26.1s INFO: apt-cache knows about the following packages: libbio-samtools-perl 2m26.1s INFO: Running scripts pre_install 2m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_database-server'] 2m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_database-server'] 2m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_exceptions'] 2m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_exceptions'] 2m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_extras'] 2m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_extras'] 2m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_foreign_architecture'] 2m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_foreign_architecture'] 2m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'policy'] 2m26.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ jessie/main Translation-en 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 2m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'policy'] 2m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'policy', 'libbio-samtools-perl'] 2m26.2s DUMP: libbio-samtools-perl: Installed: 1.39-1+b1 Candidate: 1.39-1+b1 Version table: *** 1.39-1+b1 0 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 2m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'policy', 'libbio-samtools-perl'] 2m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', '-y', 'install', 'libbio-samtools-perl'] 2m26.5s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-samtools-perl is already the newest version. The following packages were automatically installed and are no longer required: apache2.2-bin apache2.2-common libb-hooks-endofscope-perl libcdt4 libcgraph5 libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclass-tiny-perl libdevel-partialdump-perl libdist-checkconflicts-perl libeval-closure-perl libffi5 libgcrypt11 libgd2-xpm libgnutls26 libgraph4 libgvpr1 libjpeg8 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmoose-perl libnamespace-clean-perl libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango1.0-0 libprocps0 libruby1.9.1 libsub-identify-perl libswitch-perl libsystemd-login0 libtasn1-3 libtiff4 libtry-tiny-perl libvariable-magic-perl ruby1.9.1 ttf-dejavu-core ttf-liberation Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', '-y', 'install', 'libbio-samtools-perl'] 2m26.5s INFO: Running scripts post_install 2m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_install_exceptions'] 2m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_install_exceptions'] 2m26.5s INFO: Running scripts post_distupgrade 2m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_distupgrade_exceptions'] 2m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_distupgrade_exceptions'] 2m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_distupgrade_zz_backports'] 2m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_distupgrade_zz_backports'] 2m26.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 2m28.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 2m28.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 2m29.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 2m29.9s INFO: Running scripts pre_install 2m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_database-server'] 2m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_database-server'] 2m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_exceptions'] 2m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_exceptions'] 2m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_extras'] 2m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_extras'] 2m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_foreign_architecture'] 2m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_foreign_architecture'] 2m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'policy'] 2m29.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ jessie/main Translation-en 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 2m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'policy'] 2m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'policy', 'libbio-samtools-perl'] 2m30.0s DUMP: libbio-samtools-perl: Installed: 1.39-1+b1 Candidate: 1.39-1+b1 Version table: *** 1.39-1+b1 0 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 2m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-cache', 'policy', 'libbio-samtools-perl'] 2m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', '-y', 'install', 'libbio-samtools-perl=1.39-1+b1'] 2m30.3s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-samtools-perl is already the newest version. The following packages were automatically installed and are no longer required: apache2.2-bin apache2.2-common libb-hooks-endofscope-perl libcdt4 libcgraph5 libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclass-tiny-perl libdevel-partialdump-perl libdist-checkconflicts-perl libeval-closure-perl libffi5 libgcrypt11 libgd2-xpm libgnutls26 libgraph4 libgvpr1 libjpeg8 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmoose-perl libnamespace-clean-perl libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango1.0-0 libprocps0 libruby1.9.1 libsub-identify-perl libswitch-perl libsystemd-login0 libtasn1-3 libtiff4 libtry-tiny-perl libvariable-magic-perl ruby1.9.1 ttf-dejavu-core ttf-liberation Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', '-y', 'install', 'libbio-samtools-perl=1.39-1+b1'] 2m30.3s INFO: Running scripts post_install 2m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_install_exceptions'] 2m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_install_exceptions'] 2m30.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 2m32.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 2m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m32.1s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed amap-align amap-align 2.2-4 install ok installed apache2 apache2 2.4.10-10+deb8u12 install ok installed apache2-bin apache2-bin 2.4.10-10+deb8u12 install ok installed apache2-data apache2-data 2.4.10-10+deb8u12 install ok installed apache2-mpm-worker apache2-mpm-worker 2.4.10-10+deb8u12 install ok installed apache2-utils apache2-utils 2.4.10-10+deb8u12 install ok installed apache2.2-bin apache2.2-bin 2.4.10-10+deb8u12 install ok installed apache2.2-common apache2.2-common 2.4.10-10+deb8u12 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bedtools bedtools 2.21.0-1 install ok installed bioperl bioperl 1.6.924-1 install ok installed bioperl-run bioperl-run 1.6.9-2 install ok installed blast2 blast2 1:2.2.26.20120620-8 install ok installed bowtie bowtie 1.1.1-2 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed bwa bwa 0.7.10-1 install ok installed ca-certificates ca-certificates 20141019+deb8u3 install ok installed clustalo clustalo 1.2.1-1 install ok installed clustalw clustalw 2.1+lgpl-4 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed dbus dbus 1.8.22-0+deb8u1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed dialign dialign 2.2.1-7 install ok installed dialign-tx dialign-tx 1.0.2-7 install ok installed dialign-tx-data dialign-tx-data 1.0.2-7 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed emboss emboss 6.6.0+dfsg-1 install ok installed emboss-data emboss-data 6.6.0+dfsg-1 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-1 install ok installed exonerate exonerate 2.2.0-6 install ok installed file file 1:5.22+15-2+deb8u4 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fontconfig fontconfig 2.11.0-6.3+deb8u1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed fonts-droid fonts-droid 1:4.4.4r2-6 install ok installed fonts-liberation fonts-liberation 1.07.4-1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed ghostscript ghostscript 9.06~dfsg-2+deb8u7 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed graphviz graphviz 2.38.0-7 install ok installed grep grep 2.20-4.1 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.2 install ok installed gzip gzip 1.6-4 install ok installed hmmer hmmer 3.1b1-3 install ok installed hostname hostname 3.15 install ok installed ifupdown ifupdown 0.7.53.1 install ok installed infernal infernal 1.1.1-2 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed iproute iproute 1:3.16.0-2 install ok installed iproute2 iproute2 3.16.0-2 install ok installed isc-dhcp-client isc-dhcp-client 4.3.1-6+deb8u3 install ok installed isc-dhcp-common isc-dhcp-common 4.3.1-6+deb8u3 install ok installed javascript-common javascript-common 11 install ok installed kalign kalign 1:2.03+20110620-2 install ok installed krb5-locales krb5-locales 1.12.1+dfsg-19+deb8u4 install ok installed libace-perl libace-perl 1.92-3+b1 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.09-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.02-3 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-3+b1 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-2 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-1 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.9~1624218-2+deb8u2 install ok installed libapache2-reload-perl libapache2-reload-perl 0.12-3 install ok installed libapr1:amd64 libapr1 1.5.1-3 install ok installed libaprutil1:amd64 libaprutil1 1.5.4-1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.5.4-1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.5.4-1 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libarchive-extract-perl libarchive-extract-perl 0.72-1 install ok installed libargtable2-0 libargtable2-0 12-1.1 install ok installed libarray-compare-perl libarray-compare-perl 2.11-1 install ok installed libatm1:amd64 libatm1 1:2.5.1-1.5 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.31-5 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.31-5 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.31-5 install ok installed libb-hooks-endofscope-perl libb-hooks-endofscope-perl 0.13-1 install ok installed libb-hooks-op-check-perl libb-hooks-op-check-perl 0.19-2+b1 install ok installed libbareword-filehandles-perl libbareword-filehandles-perl 0.003-1+b2 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.700-1 install ok installed libbio-perl-perl libbio-perl-perl 1.6.924-1 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.6.9-2 install ok installed libbio-samtools-perl libbio-samtools-perl 1.39-1+b1 install ok installed libbit-vector-perl libbit-vector-perl 7.3-1+b2 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2907-1+b2 install ok installed libbsd0:amd64 libbsd0 0.7.0-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcache-cache-perl libcache-cache-perl 1.07-2 install ok installed libcairo2:amd64 libcairo2 1.14.0-2.1+deb8u2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.4-2 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcarp-clan-perl libcarp-clan-perl 6.04-1 install ok installed libcdt4 libcdt4 2.26.3-14+deb7u2 install ok installed libcdt5 libcdt5 2.38.0-7 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.04-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.09-1 install ok installed libcgraph5 libcgraph5 2.26.3-14+deb7u2 install ok installed libcgraph6 libcgraph6 2.38.0-7 install ok installed libclass-c3-perl libclass-c3-perl 0.26-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.13-2+b1 install ok installed libclass-inspector-perl libclass-inspector-perl 1.28-1 install ok installed libclass-isa-perl libclass-isa-perl 0.36-5 install ok installed libclass-load-perl libclass-load-perl 0.22-1 install ok installed libclass-load-xs-perl libclass-load-xs-perl 0.08-1+b1 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.11-1 install ok installed libclass-tiny-perl libclass-tiny-perl 1.000-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-2+b4 install ok installed libclone-perl libclone-perl 0.37-1+b1 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.76-3+b2 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.123-2 install ok installed libcpan-meta-perl libcpan-meta-perl 2.142690-1 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-2 install ok installed libcrypt-ssleay-perl libcrypt-ssleay-perl 0.58-1+b2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libcups2:amd64 libcups2 1.7.5-11+deb8u2 install ok installed libcupsfilters1:amd64 libcupsfilters1 1.0.61-5+deb8u3 install ok installed libcupsimage2:amd64 libcupsimage2 1.7.5-11+deb8u2 install ok installed libdata-optlist-perl libdata-optlist-perl 0.109-1 install ok installed libdata-section-perl libdata-section-perl 0.200006-1 install ok installed libdata-stag-perl libdata-stag-perl 0.13-1 install ok installed libdate-calc-perl libdate-calc-perl 6.3-2 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.3-2 install ok installed libdate-manip-perl libdate-manip-perl 6.47-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.8-1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdbd-mysql-perl libdbd-mysql-perl 4.028-2+deb8u2 install ok installed libdbd-pg-perl libdbd-pg-perl 3.4.2-1 install ok installed libdbd-sqlite3-perl libdbd-sqlite3-perl 1.44-1 install ok installed libdbi-perl libdbi-perl 1.631-3+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.8.22-0+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevel-caller-perl libdevel-caller-perl 2.06-1+b2 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.13-1 install ok installed libdevel-lexalias-perl libdevel-lexalias-perl 0.05-1+b2 install ok installed libdevel-partialdump-perl libdevel-partialdump-perl 0.17-1 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 1.3400-1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.12-1 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1 install ok installed libdist-checkconflicts-perl libdist-checkconflicts-perl 0.11-1 install ok installed libdns-export100 libdns-export100 1:9.9.5.dfsg-9+deb8u15 install ok installed libencode-locale-perl libencode-locale-perl 1.03-1 install ok installed liberror-perl liberror-perl 0.17-1.1 install ok installed libeval-closure-perl libeval-closure-perl 0.11-1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u4 install ok installed libexporter-tiny-perl libexporter-tiny-perl 0.038-2 install ok installed libfcgi-perl libfcgi-perl 0.77-1+deb8u1 install ok installed libffi5:amd64 libffi5 3.0.10-3 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.003-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u2 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt11:amd64 libgcrypt11 1.5.0-5+deb7u4 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgd-perl libgd-perl 2.53-1+b1 install ok installed libgd2-xpm:amd64 libgd2-xpm 2.0.36~rc1~dfsg-6.1+deb7u2 install ok installed libgd3:amd64 libgd3 2.1.0-5+deb8u11 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-13.1 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.42.1-1+b1 install ok installed libglib2.0-data libglib2.0-data 2.42.1-1 install ok installed libgmp10:amd64 libgmp10 2:6.0.0+dfsg-6 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgnutls26:amd64 libgnutls26 2.12.20-8+deb7u5 install ok installed libgomp1:amd64 libgomp1 4.9.2-10+deb8u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libgpm2:amd64 libgpm2 1.20.4-6.1+b2 install ok installed libgraph-perl libgraph-perl 1:0.96-1.1 install ok installed libgraph4 libgraph4 2.26.3-14+deb7u2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1~deb8u1 install ok installed libgraphviz-perl libgraphviz-perl 2.16-1 install ok installed libgs9 libgs9 9.06~dfsg-2+deb8u7 install ok installed libgs9-common libgs9-common 9.06~dfsg-2+deb8u7 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.12.1+dfsg-19+deb8u4 deinstall ok config-files libgvc5 libgvc5 2.26.3-14+deb7u2 install ok installed libgvc6 libgvc6 2.38.0-7 install ok installed libgvpr1 libgvpr1 2.26.3-14+deb7u2 install ok installed libgvpr2 libgvpr2 2.38.0-7 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 0.9.35-2 install ok installed libheap-perl libheap-perl 0.80-2 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhpdf-2.2.1 libhpdf-2.2.1 2.2.1-1.1 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.11-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.71-1+b3 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.11-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-2 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.06-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libice6:amd64 libice6 2:1.0.9-1+b1 install ok installed libidn11:amd64 libidn11 1.29-1+deb8u2 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-10 install ok installed libimport-into-perl libimport-into-perl 1.002004-1 install ok installed libindirect-perl libindirect-perl 0.33-1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1+b4 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ip-perl libio-socket-ip-perl 0.32-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.002-2+deb8u3 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libio-stringy-perl libio-stringy-perl 2.110-5 install ok installed libipc-run-perl libipc-run-perl 0.92-1+deb8u1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-3+b2 install ok installed libirs-export91 libirs-export91 1:9.9.5.dfsg-9+deb8u15 install ok installed libisc-export95 libisc-export95 1:9.9.5.dfsg-9+deb8u15 install ok installed libisccfg-export90 libisccfg-export90 1:9.9.5.dfsg-9+deb8u15 install ok installed libjasper1:amd64 libjasper1 1.900.1-debian1-2.4+deb8u3 install ok installed libjbig0:amd64 libjbig0 2.1-3.1 install ok installed libjbig2dec0 libjbig2dec0 0.13-4~deb8u2 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.3.1-12 install ok installed libjpeg8:amd64 libjpeg8 8d-1+deb7u1 install ok installed libjs-jquery libjs-jquery 1.7.2+dfsg-3.2 install ok installed libk5crypto3:amd64 libk5crypto3 1.12.1+dfsg-19+deb8u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-5+b1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.12.1+dfsg-19+deb8u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.12.1+dfsg-19+deb8u4 install ok installed liblcms2-2:amd64 liblcms2-2 2.6-3+deb8u1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.40+dfsg-1+deb8u4 install ok installed liblexical-sealrequirehints-perl liblexical-sealrequirehints-perl 0.007-1+b2 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.33-2+b1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblog-message-perl liblog-message-perl 0.8-1 install ok installed liblog-message-simple-perl liblog-message-simple-perl 0.10-2 install ok installed libltdl7:amd64 libltdl7 2.4.2-1.11+b1 install ok installed liblua5.1-0:amd64 liblua5.1-0 5.1.5-7.1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmagic1:amd64 libmagic1 1:5.22+15-2+deb8u4 install ok installed libmailtools-perl libmailtools-perl 2.13-1 install ok installed libmath-derivative-perl libmath-derivative-perl 0.01-6 install ok installed libmath-spline-perl libmath-spline-perl 0.02-1 install ok installed libmime-tools-perl libmime-tools-perl 5.505-1 install ok installed libmldbm-perl libmldbm-perl 2.05-1 install ok installed libmodule-build-perl libmodule-build-perl 0.421000-2+deb8u1 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-1 install ok installed libmodule-pluggable-perl libmodule-pluggable-perl 5.1-1 install ok installed libmodule-runtime-conflicts-perl libmodule-runtime-conflicts-perl 0.001-1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.014-1 install ok installed libmodule-signature-perl libmodule-signature-perl 0.73-1+deb8u2 install ok installed libmoo-perl libmoo-perl 1.006001-1 install ok installed libmoose-perl libmoose-perl 2.1213-1 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libmro-compat-perl libmro-compat-perl 0.12-1 install ok installed libmultidimensional-perl libmultidimensional-perl 0.010-1+b2 install ok installed libmysqlclient18:amd64 libmysqlclient18 5.5.60-0+deb8u1 install ok installed libnamespace-clean-perl libnamespace-clean-perl 0.25-1 install ok installed libncbi6:amd64 libncbi6 6.1.20120620-8 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libnet-http-perl libnet-http-perl 6.07-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.01-3 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.65-1+deb8u1 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.19-1 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b1 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.20.7-1 install ok installed libpackage-constants-perl libpackage-constants-perl 0.04-1 install ok installed libpackage-deprecationmanager-perl libpackage-deprecationmanager-perl 0.13-1 install ok installed libpackage-stash-perl libpackage-stash-perl 0.37-1 install ok installed libpackage-stash-xs-perl libpackage-stash-xs-perl 0.28-2+b1 install ok installed libpadwalker-perl libpadwalker-perl 1.98-1+b1 install ok installed libpam-cap:amd64 libpam-cap 1:2.24-8 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam-systemd:amd64 libpam-systemd 215-17+deb8u7 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.36.8-3 install ok installed libpango1.0-0:amd64 libpango1.0-0 1.36.8-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.36.8-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.36.8-3 install ok installed libpangox-1.0-0:amd64 libpangox-1.0-0 0.0.2-5 install ok installed libpangoxft-1.0-0:amd64 libpangoxft-1.0-0 1.36.8-3 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu4 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu4 install ok installed libparams-classify-perl libparams-classify-perl 0.013-4+b2 install ok installed libparams-util-perl libparams-util-perl 1.07-2+b1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967009+dfsg-1 install ok installed libpathplan4 libpathplan4 2.38.0-7 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libperl5.20 libperl5.20 5.20.2-3+deb8u11 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.32.6-3 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libpod-latex-perl libpod-latex-perl 0.61-1 install ok installed libpod-readme-perl libpod-readme-perl 0.11-1 install ok installed libpostscript-perl libpostscript-perl 0.06-2 install ok installed libpq5:amd64 libpq5 9.4.18-0+deb8u1 install ok installed libprocps0:amd64 libprocps0 1:3.3.3-3 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.9-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.9-2+deb8u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.9-2+deb8u1 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libregexp-common-perl libregexp-common-perl 2013031301-1 install ok installed librole-tiny-perl librole-tiny-perl 1.003004-1 install ok installed libruby1.9.1 libruby1.9.1 1.9.3.194-8.1+deb7u5 install ok installed libruby2.1:amd64 libruby2.1 2.1.5-2+deb8u3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.26.dfsg1-13+deb8u1 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libset-scalar-perl libset-scalar-perl 1.29-1 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsoap-lite-perl libsoap-lite-perl 1.11-1 install ok installed libsocket-perl libsocket-perl 2.016-1 install ok installed libsoftware-license-perl libsoftware-license-perl 0.103010-3 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-1 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u2 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u8 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0607-1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libstrictures-perl libstrictures-perl 1.005005-1 install ok installed libsub-exporter-perl libsub-exporter-perl 0.986-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001011-1 install ok installed libsub-identify-perl libsub-identify-perl 0.08-1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsub-name-perl libsub-name-perl 0.12-1 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-2 install ok installed libsvg-perl libsvg-perl 2.59-1 install ok installed libswitch-perl libswitch-perl 2.17-2 install ok installed libsystemd-login0:amd64 libsystemd-login0 215-17+deb8u7 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtask-weaken-perl libtask-weaken-perl 1.04-1 install ok installed libtasn1-3:amd64 libtasn1-3 2.13-2+deb7u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.2-3+deb8u3 install ok installed libterm-ui-perl libterm-ui-perl 0.42-1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-soundex-perl libtext-soundex-perl 3.4-1+b2 install ok installed libtext-template-perl libtext-template-perl 1.46-1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libthai-data libthai-data 0.1.21-1 install ok installed libthai0:amd64 libthai0 0.1.21-1 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-1 install ok installed libtiff4:amd64 libtiff4 3.9.6-11 install ok installed libtiff5:amd64 libtiff5 4.0.3-12.3+deb8u5 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.22-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.22-1 install ok installed libtype-tiny-perl libtype-tiny-perl 1.000004-1 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.010-1 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libunicode-map-perl libunicode-map-perl 0.112-11+b1 install ok installed liburi-perl liburi-perl 1.64-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libvariable-magic-perl libvariable-magic-perl 0.55-1 install ok installed libvpx1:amd64 libvpx1 1.3.0-3+deb8u1 install ok installed libwww-perl libwww-perl 6.08-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u1 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.12-2+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.10-3+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.10-3+b1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+b1 install ok installed libxdot4 libxdot4 2.38.0-7 install ok installed libxext6:amd64 libxext6 2:1.3.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-1 install ok installed libxml-dom-perl libxml-dom-perl 1.44-1 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-1 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-5 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0116+dfsg-1+deb8u2 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.92-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.11-1 install ok installed libxml-parser-perl libxml-parser-perl 2.41-3 install ok installed libxml-perl libxml-perl 0.08-2 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.07-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.40-2 install ok installed libxml-sax-perl libxml-sax-perl 0.99+dfsg-2 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.54-1 install ok installed libxml-simple-perl libxml-simple-perl 2.20-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.48-1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.13-7 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.13-1 install ok installed libxml2:amd64 libxml2 2.9.1+dfsg1-5+deb8u6 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-1 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-0+deb8u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.8-1+b1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.28-2+deb8u3 install ok installed libxt6:amd64 libxt6 1:1.1.4-1+b1 install ok installed libxtables10 libxtables10 1.4.21-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.1.6-3 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.41-6 install ok installed libyaml-perl libyaml-perl 1.13-1 install ok installed libyaml-syck-perl libyaml-syck-perl 1.27-2+b2 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed lynx lynx 2.8.9dev1-2+deb8u1 install ok installed lynx-cur lynx-cur 2.8.9dev1-2+deb8u1 install ok installed mafft mafft 7.205-1 install ok installed maq maq 0.7.1-5 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.58 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed muscle muscle 1:3.8.31-1 install ok installed mustang mustang 3.2.2-1 install ok installed mysql-common mysql-common 5.5.60-0+deb8u1 install ok installed ncbi-blast+ ncbi-blast+ 2.2.29-3 install ok installed ncbi-data ncbi-data 6.1.20120620-8 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed netbase netbase 5.3 install ok installed openssl openssl 1.0.1t-1+deb8u8 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl perl 5.20.2-3+deb8u11 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed perl-doc perl-doc 5.20.2-3+deb8u11 install ok installed perl-modules perl-modules 5.20.2-3+deb8u11 install ok installed perl-tk perl-tk 1:804.032-3+b3 install ok installed phyml phyml 2:20120412-2 install ok installed poa poa 2.0+20060928-3 install ok installed poppler-data poppler-data 0.4.7-1 install ok installed prank prank 0.0.140110-1 install ok installed primer3 primer3 2.3.6-1 install ok installed probalign probalign 1.4-3 install ok installed probcons probcons 1.12-9 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed proda proda 1.0-8 install ok installed psmisc psmisc 22.21-2 install ok installed python python 2.7.9-1 install ok installed python-minimal python-minimal 2.7.9-1 install ok installed python2.7 python2.7 2.7.9-2+deb8u1 install ok installed python2.7-minimal python2.7-minimal 2.7.9-2+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed rename rename 0.20-3 install ok installed ruby ruby 1:2.1.5+deb8u2 install ok installed ruby1.9.1 ruby1.9.1 1.9.3.194-8.1+deb7u5 install ok installed ruby2.1 ruby2.1 2.1.5-2+deb8u3 install ok installed rubygems-integration rubygems-integration 1.8 install ok installed samtools samtools 0.1.19-1 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed sgml-base sgml-base 1.26+nmu4 install ok installed shared-mime-info shared-mime-info 1.3-1 install ok installed sim4 sim4 0.0.20121010-1 install ok installed ssl-cert ssl-cert 1.0.35 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit sysvinit 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed t-coffee t-coffee 11.00.8cbe486-1 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tigr-glimmer tigr-glimmer 3.02-3 install ok installed tm-align tm-align 20140601+dfsg-1 install ok installed ttf-dejavu-core ttf-dejavu-core 2.34-1 install ok installed ttf-liberation ttf-liberation 1.07.4-1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed wise wise 2.4.1-17 install ok installed wise-data wise-data 2.4.1-17 install ok installed x11-common x11-common 1:7.7+7 install ok installed xdg-user-dirs xdg-user-dirs 0.15-2 install ok installed xml-core xml-core 0.13+nmu2 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2+b3 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 2m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m33.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', '-ac', '--ignore-obsolete'] 2m37.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', '-ac', '--ignore-obsolete'] 2m37.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m37.8s DUMP: 0.15.1 2m37.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m37.8s INFO: Running adequate version 0.15.1 now. 2m37.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'libbio-samtools-perl'] 2m38.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'libbio-samtools-perl'] 2m38.0s INFO: Running scripts pre_remove 2m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m44.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m44.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_remove_exceptions'] 2m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/pre_remove_exceptions'] 2m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', 'remove', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libyaml-perl', 'emboss', 'libpangoxft-1.0-0:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libmro-compat-perl', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libfile-listing-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'kalign', 'libxml-sax-perl', 'libprocps0:amd64', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'ruby1.9.1', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libgraph4', 'libgd3:amd64', 'libxext6:amd64', 'libhtml-format-perl', 'libeval-closure-perl', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'python-minimal', 'libxft2:amd64', 'bwa', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'libperl5.20', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libcupsimage2:amd64', 'libnamespace-clean-perl', 'dialign-tx-data', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'ttf-liberation', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libfile-slurp-tiny-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libpixman-1-0:amd64', 'proda', 'bedtools', 'primer3', 'libsocket-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libmodule-runtime-perl', 'maq', 'libxslt1.1:amd64', 'libmysqlclient18:amd64', 'libidn11:amd64', 'libxml-libxslt-perl', 'libjcode-pm-perl', 'libkrb5support0:amd64', 'libmoose-perl', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libmodule-runtime-conflicts-perl', 'libjs-jquery', 'libheap-perl', 'libbio-asn1-entrezgene-perl', 'libgmp10:amd64', 't-coffee', 'libnettle4:amd64', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'libp11-kit0:amd64', 'libyaml-libyaml-perl', 'libsoftware-license-perl', 'libpackage-stash-perl', 'libgomp1:amd64', 'libthai0:amd64', 'libxml-writer-perl', 'hmmer', 'libdigest-perl-md5-perl', 'libmagic1:amd64', 'libwww-perl', 'apache2-mpm-worker', 'apache2.2-common', 'libmath-derivative-perl', 'libdevel-stacktrace-perl', 'libxml-sax-base-perl', 'libgvc6', 'poppler-data', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'libxml2:amd64', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'libxml-dom-perl', 'openssl', 'fontconfig-config', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libmultidimensional-perl', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'libalgorithm-munkres-perl', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'ncbi-blast+', 'clustalw', 'libncbi6:amd64', 'libgvpr1', 'libgvpr2', 'libisccfg-export90', 'phyml', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'libapache2-mod-perl2', 'libpackage-deprecationmanager-perl', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'fonts-liberation', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libxau6:amd64', 'libclass-load-perl', 'iproute2', 'krb5-locales', 'exonerate', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libparams-util-perl', 'iproute', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'apache2.2-bin', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libyaml-0-2:amd64', 'libgdbm3:amd64', 'fontconfig', 'libace-perl', 'infernal', 'libclass-c3-xs-perl', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libbsd0:amd64', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'mafft', 'apache2-utils', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'libjpeg8:amd64', 'libtype-tiny-xs-perl', 'emboss-lib', 'libswitch-perl', 'libhttp-message-perl', 'libsub-exporter-perl', 'blast2', 'libio-sessiondata-perl', 'sgml-base', 'libhtml-parser-perl', 'libpod-readme-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libgnutls-deb0-28:amd64', 'libpangox-1.0-0:amd64', 'mime-support', 'libpango1.0-0:amd64', 'libvariable-magic-perl', 'ncbi-data', 'libharfbuzz0b:amd64', 'perl-tk', 'libbit-vector-perl', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libsm6:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'libsub-identify-perl', 'libio-socket-ip-perl', 'libpaper-utils', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxt6:amd64', 'libmath-spline-perl', 'libffi6:amd64', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libffi5:amd64', 'libindirect-perl', 'libxml-regexp-perl', 'libjbig2dec0', 'samtools', 'libxtables10', 'libtiff4:amd64', 'probalign', 'libio-pty-perl', 'libpathplan4', 'libcrypt-rc4-perl', 'libcgraph6', 'libxaw7:amd64', 'libyaml-syck-perl', 'libcgraph5', 'libgvc5', 'libsasl2-modules-db:amd64', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libxml-sax-expat-perl', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'libmailtools-perl', 'libdist-checkconflicts-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'libxml-sax-writer-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'apache2-bin', 'libsystemd-login0:amd64', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'shared-mime-info', 'libsoap-lite-perl', 'libx11-6:amd64', 'libtree-dagnode-perl', 'tigr-glimmer', 'mustang', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'bioperl', 'libparams-classify-perl', 'dialign-tx', 'libclass-tiny-perl', 'libxml-twig-perl', 'libxdmcp6:amd64', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libxml-parser-perl', 'libssl1.0.0:amd64', 'libregexp-common-perl', 'libclass-load-xs-perl', 'libgs9', 'libfreetype6:amd64', 'libxml-perl', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'liblwp-protocol-https-perl', 'perl', 'libatm1:amd64', 'libhttp-daemon-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'netbase', 'libxrender1:amd64', 'libjbig0:amd64', 'libruby1.9.1', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-partialdump-perl', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libhttp-negotiate-perl', 'libunicode-map-perl', 'libaprutil1:amd64', 'file', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'emboss-data', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libsvg-perl', 'libdevel-caller-perl', 'libbsd-resource-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'libsasl2-2:amd64', 'libcdt5', 'libcdt4', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl', 'libbio-samtools-perl'] 2m51.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libgvc5' is not installed, so not removed The following packages will be REMOVED: amap-align apache2 apache2-bin apache2-data apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalo clustalw dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid fonts-liberation ghostscript graphviz gsfonts hmmer ifupdown infernal iproute iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libatm1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbareword-filehandles-perl libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbio-samtools-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcarp-clan-perl libcdt4 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph5 libcgraph6 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclass-method-modifiers-perl libclass-tiny-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdb5.1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-partialdump-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdist-checkconflicts-perl libdns-export100 libencode-locale-perl liberror-perl libeval-closure-perl libexporter-tiny-perl libfcgi-perl libffi5 libffi6 libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgcrypt11 libgd-perl libgd2-xpm libgd3 libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls-deb0-28 libgnutls26 libgomp1 libgraph-perl libgraph4 libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgvc6 libgvpr1 libgvpr2 libharfbuzz0b libheap-perl libhogweed2 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libidn11 libijs-0.35 libimport-into-perl libindirect-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjpeg8 libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl liblog-message-perl liblog-message-simple-perl libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-build-perl libmodule-implementation-perl libmodule-pluggable-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmoose-perl libmro-compat-perl libmultidimensional-perl libmysqlclient18 libnamespace-clean-perl libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libole-storage-lite-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpadwalker-perl libpango-1.0-0 libpango1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangox-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libperl5.20 libpixman-1-0 libpng12-0 libpod-latex-perl libpod-readme-perl libpostscript-perl libpq5 libprocps0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libregexp-common-perl librole-tiny-perl libruby1.9.1 libruby2.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsm6 libsoap-lite-perl libsocket-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libswitch-perl libsystemd-login0 libtask-weaken-perl libtasn1-3 libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff4 libtiff5 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libunicode-map-perl liburi-perl libvariable-magic-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxtables10 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-syck-perl lynx lynx-cur mafft maq mime-support muscle mustang mysql-common ncbi-blast+ ncbi-data netbase openssl perl perl-doc perl-modules perl-tk phyml poa poppler-data prank primer3 probalign probcons proda python python-minimal python2.7 python2.7-minimal rename ruby ruby1.9.1 ruby2.1 rubygems-integration samtools sgml-base shared-mime-info sim4 ssl-cert t-coffee tigr-glimmer tm-align ttf-dejavu-core ttf-liberation wise wise-data x11-common xdg-user-dirs xml-core 0 upgraded, 0 newly installed, 404 to remove and 0 not upgraded. After this operation, 982 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29650 files and directories currently installed.) Removing amap-align (2.2-4) ... Removing apache2.2-common (2.4.10-10+deb8u12) ... Removing apache2-mpm-worker (2.4.10-10+deb8u12) ... Removing apache2 (2.4.10-10+deb8u12) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing apache2.2-bin (2.4.10-10+deb8u12) ... Removing libapache2-reload-perl (0.12-3) ... Removing libapache-dbi-perl (1.12-1) ... Removing libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... Removing apache2-bin (2.4.10-10+deb8u12) ... Removing apache2-data (2.4.10-10+deb8u12) ... Removing apache2-utils (2.4.10-10+deb8u12) ... Removing bedtools (2.21.0-1) ... Removing bioperl-run (1.6.9-2) ... Removing bioperl (1.6.924-1) ... Removing blast2 (1:2.2.26.20120620-8) ... Removing bowtie (1.1.1-2) ... Removing bwa (0.7.10-1) ... Removing ruby (1:2.1.5+deb8u2) ... Removing ruby2.1 (2.1.5-2+deb8u3) ... Removing rubygems-integration (1.8) ... Removing libgraphviz-perl (2.16-1) ... Removing libxml-xpath-perl (1.13-7) ... Removing clustalo (1.2.1-1) ... Removing clustalw (2.1+lgpl-4) ... Removing dialign (2.2.1-7) ... Removing dialign-tx (1.0.2-7) ... Removing dialign-tx-data (1.0.2-7) ... Removing emboss (6.6.0+dfsg-1) ... Removing emboss-data (6.6.0+dfsg-1) ... Removing emboss-lib (6.6.0+dfsg-1) ... Removing exonerate (2.2.0-6) ... Removing file (1:5.22+15-2+deb8u4) ... Removing libpango1.0-0:amd64 (1.36.8-3) ... Removing libpangox-1.0-0:amd64 (0.0.2-5) ... Removing libpangoxft-1.0-0:amd64 (1.36.8-3) ... Removing libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Removing perl-tk (1:804.032-3+b3) ... Removing libxft2:amd64 (2.3.2-1) ... Removing ttf-dejavu-core (2.34-1) ... Removing fonts-dejavu-core (2.34-1) ... Removing fonts-droid (1:4.4.4r2-6) ... Removing ttf-liberation (1.07.4-1) ... Removing ghostscript (9.06~dfsg-2+deb8u7) ... Removing graphviz (2.38.0-7) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Removing hmmer (3.1b1-3) ... Removing ifupdown (0.7.53.1) ... Removing infernal (1.1.1-2) ... Removing iproute (1:3.16.0-2) ... Removing isc-dhcp-client (4.3.1-6+deb8u3) ... Removing iproute2 (3.16.0-2) ... Removing isc-dhcp-common (4.3.1-6+deb8u3) ... Removing javascript-common (11) ... Removing kalign (1:2.03+20110620-2) ... Removing krb5-locales (1.12.1+dfsg-19+deb8u4) ... Removing libace-perl (1.92-3+b1) ... Removing libmoose-perl (2.1213-1) ... Removing libsoftware-license-perl (0.103010-3) ... Removing libdata-section-perl (0.200006-1) ... Removing libmro-compat-perl (0.12-1) ... Removing libclass-c3-perl (0.26-1) ... Removing libalgorithm-c3-perl (0.09-1) ... Removing libalgorithm-diff-xs-perl (0.04-3+b1) ... Removing libalgorithm-diff-perl (1.19.02-3) ... Removing libalgorithm-munkres-perl (0.08-2) ... Removing libaprutil1-ldap:amd64 (1.5.4-1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Removing libaprutil1:amd64 (1.5.4-1) ... Removing libapr1:amd64 (1.5.1-3) ... Removing libarchive-extract-perl (0.72-1) ... Removing libargtable2-0 (12-1.1) ... Removing libarray-compare-perl (2.11-1) ... Removing libatm1:amd64 (1:2.5.1-1.5) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing libgs9 (9.06~dfsg-2+deb8u7) ... Removing libdevel-partialdump-perl (0.17-1) ... Removing libclass-load-xs-perl (0.08-1+b1) ... Removing libclass-load-perl (0.22-1) ... Removing libnamespace-clean-perl (0.25-1) ... Removing libb-hooks-endofscope-perl (0.13-1) ... Removing libmultidimensional-perl (0.010-1+b2) ... Removing libbareword-filehandles-perl (0.003-1+b2) ... Removing libb-hooks-op-check-perl (0.19-2+b1) ... Removing libbio-asn1-entrezgene-perl (1.700-1) ... Removing libbio-samtools-perl (1.39-1+b1) ... Removing libbio-perl-run-perl (1.6.9-2) ... Removing libbio-perl-perl (1.6.924-1) ... Removing libdate-calc-xs-perl (6.3-2) ... Removing libdate-calc-perl (6.3-2) ... Removing libbit-vector-perl (7.3-1+b2) ... Removing libbsd-resource-perl (1.2907-1+b2) ... Removing lynx (2.8.9dev1-2+deb8u1) ... Removing lynx-cur (2.8.9dev1-2+deb8u1) ... Removing libbsd0:amd64 (0.7.0-2) ... Removing libcache-cache-perl (1.07-2) ... Removing libgvc6 (2.38.0-7) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libcarp-clan-perl (6.04-1) ... Removing libgvpr1 (2.26.3-14+deb7u2) ... Removing libcgraph5 (2.26.3-14+deb7u2) ... Removing libgvpr2 (2.38.0-7) ... Removing libcgraph6 (2.38.0-7) ... Removing libcdt5 (2.38.0-7) ... Removing libcgi-fast-perl (1:2.04-1) ... Removing libcgi-pm-perl (4.09-1) ... Removing libclass-c3-xs-perl (0.13-2+b1) ... Removing libxmlrpc-lite-perl (0.717-1) ... Removing libsoap-lite-perl (1.11-1) ... Removing libclass-inspector-perl (1.28-1) ... Removing libclass-isa-perl (0.36-5) ... Removing libmoo-perl (1.006001-1) ... Removing librole-tiny-perl (1.003004-1) ... Removing libclass-method-modifiers-perl (2.11-1) ... Removing libclass-tiny-perl (1.000-1) ... Removing libclass-xsaccessor-perl (1.19-2+b4) ... Removing libclone-perl (0.37-1+b1) ... Removing libconvert-binary-c-perl (0.76-3+b2) ... Removing libmime-tools-perl (5.505-1) ... Removing libconvert-binhex-perl (1.123-2) ... Removing libmodule-build-perl (0.421000-2+deb8u1) ... Removing 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Removing 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Removing libcpan-meta-perl (2.142690-1) ... Removing libspreadsheet-parseexcel-perl (0.6500-1) ... Removing libcrypt-rc4-perl (2.02-2) ... Removing libcrypt-ssleay-perl (0.58-1+b2) ... Removing libeval-closure-perl (0.11-1) ... Removing libsub-exporter-perl (0.986-1) ... Removing libdata-optlist-perl (0.109-1) ... Removing libdata-stag-perl (0.13-1) ... Removing libdate-manip-perl (6.47-1) ... Removing libdb5.1:amd64 (5.1.29-5) ... Removing libdbd-mysql-perl (4.028-2+deb8u2) ... Removing libdbd-pg-perl (3.4.2-1) ... Removing libdbd-sqlite3-perl (1.44-1) ... Removing libdbi-perl (1.631-3+b1) ... Removing libdevel-lexalias-perl (0.05-1+b2) ... Removing libdevel-caller-perl (2.06-1+b2) ... Removing libdevel-globaldestruction-perl (0.13-1) ... Removing libdevel-stacktrace-perl (1.3400-1) ... Removing libdevel-symdump-perl (2.12-1) ... Removing libdigest-perl-md5-perl (1.9-1) ... Removing libmodule-runtime-conflicts-perl (0.001-1) ... Removing libdist-checkconflicts-perl (0.11-1) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Removing liberror-perl (0.17-1.1) ... Removing libtype-tiny-perl (1.000004-1) ... Removing libexporter-tiny-perl (0.038-2) ... Removing libfcgi-perl (0.77-1+deb8u1) ... Removing ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Removing libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Removing libffi5:amd64 (3.0.10-3) ... Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Removing ncbi-blast+ (2.2.29-3) ... Removing python (2.7.9-1) ... Removing python2.7 (2.7.9-2+deb8u1) ... Removing libsvg-graph-perl (0.02-2) ... Removing libtree-dagnode-perl (1.22-1) ... Removing libfile-slurp-tiny-perl (0.003-1) ... Removing libhtml-format-perl (2.11-1) ... Removing libfont-afm-perl (1.20-1) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Removing libfreezethaw-perl (0.5001-1) ... Removing libgnutls26:amd64 (2.12.20-8+deb7u5) ... Removing libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Removing libgd-perl (2.53-1+b1) ... Removing libgd3:amd64 (2.1.0-5+deb8u11) ... Removing xml-core (0.13+nmu2) ... Removing sgml-base (1.26+nmu4) ... Removing rename (0.20-3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing tm-align (20140601+dfsg-1) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing wise (2.4.1-17) ... Removing shared-mime-info (1.3-1) ... Removing libglib2.0-data (2.42.1-1) ... Removing libpq5:amd64 (9.4.18-0+deb8u1) ... Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Removing libgomp1:amd64 (4.9.2-10+deb8u1) ... Removing libgraph-perl (1:0.96-1.1) ... Removing libgraph4 (2.26.3-14+deb7u2) ... Removing libharfbuzz0b:amd64 (0.9.35-2) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing libgs9-common (9.06~dfsg-2+deb8u7) ... Removing libheap-perl (0.80-2) ... Removing libhpdf-2.2.1 (2.2.1-1.1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhtml-tableextract-perl (2.11-1) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Removing libxmu6:amd64 (2:1.1.2-1) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Removing libice6:amd64 (2:1.0.9-1+b1) ... Removing libidn11:amd64 (1.29-1+deb8u2) ... Removing libijs-0.35:amd64 (0.35-10) ... Removing libimport-into-perl (1.002004-1) ... Removing libindirect-perl (0.33-1) ... Removing libipc-run-perl (0.92-1+deb8u1) ... Removing libio-pty-perl (1:1.08-1+b4) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libio-socket-ip-perl (0.32-1) ... Removing libmailtools-perl (2.13-1) ... Removing libnet-smtp-ssl-perl (1.01-3) ... Removing libio-string-perl (1.08-3) ... Removing libole-storage-lite-perl (0.19-1) ... Removing libio-stringy-perl (2.110-5) ... Removing libipc-sharelite-perl (0.17-3+b2) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Removing libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Removing libtiff4:amd64 (3.9.6-11) ... Removing libjbig2dec0 (0.13-4~deb8u2) ... Removing libjcode-pm-perl (2.06-1) ... Removing libjpeg8:amd64 (8d-1+deb7u1) ... Removing libjs-jquery (1.7.2+dfsg-3.2) ... Removing liblcms2-2:amd64 (2.6-3+deb8u1) ... Removing liblexical-sealrequirehints-perl (0.007-1+b2) ... Removing libstatistics-descriptive-perl (3.0607-1) ... Removing libpackage-deprecationmanager-perl (0.13-1) ... Removing liblist-moreutils-perl (0.33-2+b1) ... Removing libterm-ui-perl (0.42-1) ... Removing liblog-message-simple-perl (0.10-2) ... Removing liblog-message-perl (0.8-1) ... Removing liblua5.1-0:amd64 (5.1.5-7.1) ... Removing libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Removing libmath-spline-perl (0.02-1) ... Removing libmath-derivative-perl (0.01-6) ... Removing libmldbm-perl (2.05-1) ... Removing libpackage-stash-perl (0.37-1) ... Removing libmodule-implementation-perl (0.09-1) ... Removing libmodule-pluggable-perl (5.1-1) ... Removing libmodule-runtime-perl (0.014-1) ... Removing libmodule-signature-perl (0.73-1+deb8u2) ... Removing libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Removing libncbi6:amd64 (6.1.20120620-8) ... Removing libossp-uuid-perl (1.6.2-1.5+b1) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Removing libpackage-constants-perl (0.04-1) ... Removing libpackage-stash-xs-perl (0.28-2+b1) ... Removing libpadwalker-perl (1.98-1+b1) ... Removing libpaper-utils (1.1.24+nmu4) ... Removing libpaper1:amd64 (1.1.24+nmu4) ... Removing libparams-classify-perl (0.013-4+b2) ... Removing libparams-util-perl (1.07-2+b1) ... Removing libspreadsheet-writeexcel-perl (2.40-1) ... Removing libparse-recdescent-perl (1.967009+dfsg-1) ... Removing libpathplan4 (2.38.0-7) ... Removing libperl5.20 (5.20.2-3+deb8u11) ... Removing libpixman-1-0:amd64 (0.32.6-3) ... Removing libpod-latex-perl (0.61-1) ... Removing 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Removing 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Removing libpod-readme-perl (0.11-1) ... Removing libpostscript-perl (0.06-2) ... Removing libprocps0:amd64 (1:3.3.3-3) ... Removing libpython-stdlib:amd64 (2.7.9-1) ... Removing python-minimal (2.7.9-1) ... Removing python2.7-minimal (2.7.9-2+deb8u1) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Removing libregexp-common-perl (2013031301-1) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libset-scalar-perl (1.29-1) ... Removing libsocket-perl (2.016-1) ... Removing libsort-naturally-perl (1.03-1) ... Removing ssl-cert (1.0.35) ... Removing libstrictures-perl (1.005005-1) ... Removing libsub-exporter-progressive-perl (0.001011-1) ... Removing libsub-identify-perl (0.08-1) ... Removing libsub-install-perl (0.928-1) ... Removing libsub-name-perl (0.12-1) ... Removing libsvg-perl (2.59-1) ... Removing libswitch-perl (2.17-2) ... Removing libsystemd-login0:amd64 (215-17+deb8u7) ... Removing libtask-weaken-perl (1.04-1) ... Removing libtasn1-3:amd64 (2.13-2+deb7u2) ... Removing libtext-soundex-perl (3.4-1+b2) ... Removing libtext-template-perl (1.46-1) ... Removing libtie-ixhash-perl (1.23-1) ... Removing libtry-tiny-perl (0.22-1) ... Removing libtype-tiny-xs-perl (0.010-1) ... Removing libunicode-map-perl (0.112-11+b1) ... Removing libvariable-magic-perl (0.55-1) ... Removing libvpx1:amd64 (1.3.0-3+deb8u1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Removing libxdot4 (2.38.0-7) ... Removing libxext6:amd64 (2:1.3.3-1) ... Removing libxml-dom-xpath-perl (0.14-1) ... Removing libxml-dom-perl (1.44-1) ... Removing libxml-sax-writer-perl (0.54-1) ... Removing libxml-filter-buffertext-perl (1.01-5) ... Removing libxml-simple-perl (2.20-1) ... Removing libxml-libxslt-perl (1.92-1+b1) ... Removing libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.11-1) ... Removing libxml-perl (0.08-2) ... Removing libxml-regexp-perl (0.04-1) ... Removing libxml-sax-base-perl (1.07-1) ... Removing libxml-twig-perl (1:3.48-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libxml-xpathengine-perl (0.13-1) ... Removing libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Removing libxtables10 (1.4.21-2+b1) ... Removing libyaml-0-2:amd64 (0.1.6-3) ... Removing libyaml-libyaml-perl (0.41-6) ... Removing libyaml-perl (1.13-1) ... Removing libyaml-syck-perl (1.27-2+b2) ... Removing mafft (7.205-1) ... Removing maq (0.7.1-5) ... Removing muscle (1:3.8.31-1) ... Removing mustang (3.2.2-1) ... Removing mysql-common (5.5.60-0+deb8u1) ... Removing ncbi-data (6.1.20120620-8) ... Removing perl-doc (5.20.2-3+deb8u11) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing phyml (2:20120412-2) ... Removing poa (2.0+20060928-3) ... Removing poppler-data (0.4.7-1) ... Removing prank (0.0.140110-1) ... Removing primer3 (2.3.6-1) ... Removing probalign (1.4-3) ... Removing probcons (1.12-9) ... Removing proda (1.0-8) ... Removing samtools (0.1.19-1) ... Removing sim4 (0.0.20121010-1) ... Removing t-coffee (11.00.8cbe486-1) ... Removing tigr-glimmer (3.02-3) ... Removing wise-data (2.4.1-17) ... Removing x11-common (1:7.7+7) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-user-dirs (0.15-2) ... Removing libxml-parser-perl (2.41-3) ... Removing libpango-1.0-0:amd64 (1.36.8-3) ... Removing fontconfig (2.11.0-6.3+deb8u1) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-liberation (1.07.4-1) ... Removing libcdt4 (2.26.3-14+deb7u2) ... Removing libthai0:amd64 (0.1.21-1) ... Removing libdatrie1:amd64 (0.2.8-1) ... Removing libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Removing libglib2.0-0:amd64 (2.42.1-1+b1) ... Removing libltdl7:amd64 (2.4.2-1.11+b1) ... Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing libthai-data (0.1.21-1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Removing libx11-data (2:1.6.2-3+deb8u1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Removing mime-support (3.58) ... Removing libwww-perl (6.08-1) ... Removing libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-1) ... Removing libhtml-parser-perl (3.71-1+b3) ... Removing libhtml-tagset-perl (3.20-2) ... Removing libhttp-cookies-perl (6.01-1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libnet-http-perl (6.07-1) ... Removing libio-socket-ssl-perl (2.002-2+deb8u3) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Removing libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12) ... Removing libnet-ssleay-perl (1.65-1+deb8u1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libwww-robotrules-perl (6.01-1) ... Removing netbase (5.3) ... Removing ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Removing libcups2:amd64 (1.7.5-11+deb8u2) ... Removing libavahi-client3:amd64 (0.6.31-5) ... Removing libavahi-common3:amd64 (0.6.31-5) ... Removing libavahi-common-data:amd64 (0.6.31-5) ... Removing libhttp-message-perl (6.06-1) ... Removing libencode-locale-perl (1.03-1) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Removing openssl (1.0.1t-1+deb8u8) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Removing libtimedate-perl (2.3000-2) ... Removing liburi-perl (1.64-1) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing perl (5.20.2-3+deb8u11) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Removing perl-modules (5.20.2-3+deb8u11) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 2m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', 'remove', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libyaml-perl', 'emboss', 'libpangoxft-1.0-0:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libmro-compat-perl', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libfile-listing-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'kalign', 'libxml-sax-perl', 'libprocps0:amd64', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'ruby1.9.1', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libgraph4', 'libgd3:amd64', 'libxext6:amd64', 'libhtml-format-perl', 'libeval-closure-perl', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'python-minimal', 'libxft2:amd64', 'bwa', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'libperl5.20', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libcupsimage2:amd64', 'libnamespace-clean-perl', 'dialign-tx-data', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'ttf-liberation', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libfile-slurp-tiny-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libpixman-1-0:amd64', 'proda', 'bedtools', 'primer3', 'libsocket-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libmodule-runtime-perl', 'maq', 'libxslt1.1:amd64', 'libmysqlclient18:amd64', 'libidn11:amd64', 'libxml-libxslt-perl', 'libjcode-pm-perl', 'libkrb5support0:amd64', 'libmoose-perl', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libmodule-runtime-conflicts-perl', 'libjs-jquery', 'libheap-perl', 'libbio-asn1-entrezgene-perl', 'libgmp10:amd64', 't-coffee', 'libnettle4:amd64', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'libp11-kit0:amd64', 'libyaml-libyaml-perl', 'libsoftware-license-perl', 'libpackage-stash-perl', 'libgomp1:amd64', 'libthai0:amd64', 'libxml-writer-perl', 'hmmer', 'libdigest-perl-md5-perl', 'libmagic1:amd64', 'libwww-perl', 'apache2-mpm-worker', 'apache2.2-common', 'libmath-derivative-perl', 'libdevel-stacktrace-perl', 'libxml-sax-base-perl', 'libgvc6', 'poppler-data', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'libxml2:amd64', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'libxml-dom-perl', 'openssl', 'fontconfig-config', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libmultidimensional-perl', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'libalgorithm-munkres-perl', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'ncbi-blast+', 'clustalw', 'libncbi6:amd64', 'libgvpr1', 'libgvpr2', 'libisccfg-export90', 'phyml', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'libapache2-mod-perl2', 'libpackage-deprecationmanager-perl', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'fonts-liberation', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libxau6:amd64', 'libclass-load-perl', 'iproute2', 'krb5-locales', 'exonerate', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libparams-util-perl', 'iproute', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'apache2.2-bin', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libyaml-0-2:amd64', 'libgdbm3:amd64', 'fontconfig', 'libace-perl', 'infernal', 'libclass-c3-xs-perl', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libbsd0:amd64', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'mafft', 'apache2-utils', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'libjpeg8:amd64', 'libtype-tiny-xs-perl', 'emboss-lib', 'libswitch-perl', 'libhttp-message-perl', 'libsub-exporter-perl', 'blast2', 'libio-sessiondata-perl', 'sgml-base', 'libhtml-parser-perl', 'libpod-readme-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libgnutls-deb0-28:amd64', 'libpangox-1.0-0:amd64', 'mime-support', 'libpango1.0-0:amd64', 'libvariable-magic-perl', 'ncbi-data', 'libharfbuzz0b:amd64', 'perl-tk', 'libbit-vector-perl', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libsm6:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'libsub-identify-perl', 'libio-socket-ip-perl', 'libpaper-utils', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxt6:amd64', 'libmath-spline-perl', 'libffi6:amd64', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libffi5:amd64', 'libindirect-perl', 'libxml-regexp-perl', 'libjbig2dec0', 'samtools', 'libxtables10', 'libtiff4:amd64', 'probalign', 'libio-pty-perl', 'libpathplan4', 'libcrypt-rc4-perl', 'libcgraph6', 'libxaw7:amd64', 'libyaml-syck-perl', 'libcgraph5', 'libgvc5', 'libsasl2-modules-db:amd64', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libxml-sax-expat-perl', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'libmailtools-perl', 'libdist-checkconflicts-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'libxml-sax-writer-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'apache2-bin', 'libsystemd-login0:amd64', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'shared-mime-info', 'libsoap-lite-perl', 'libx11-6:amd64', 'libtree-dagnode-perl', 'tigr-glimmer', 'mustang', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'bioperl', 'libparams-classify-perl', 'dialign-tx', 'libclass-tiny-perl', 'libxml-twig-perl', 'libxdmcp6:amd64', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libxml-parser-perl', 'libssl1.0.0:amd64', 'libregexp-common-perl', 'libclass-load-xs-perl', 'libgs9', 'libfreetype6:amd64', 'libxml-perl', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'liblwp-protocol-https-perl', 'perl', 'libatm1:amd64', 'libhttp-daemon-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'netbase', 'libxrender1:amd64', 'libjbig0:amd64', 'libruby1.9.1', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-partialdump-perl', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libhttp-negotiate-perl', 'libunicode-map-perl', 'libaprutil1:amd64', 'file', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'emboss-data', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libsvg-perl', 'libdevel-caller-perl', 'libbsd-resource-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'libsasl2-2:amd64', 'libcdt5', 'libcdt4', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl', 'libbio-samtools-perl'] 2m51.2s INFO: Running scripts post_remove 2m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_remove_exceptions'] 2m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_remove_exceptions'] 2m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg', '--purge', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libyaml-perl', 'emboss', 'libpangoxft-1.0-0:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libmro-compat-perl', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libfile-listing-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'kalign', 'libxml-sax-perl', 'libprocps0:amd64', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'ruby1.9.1', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libgraph4', 'libgd3:amd64', 'libxext6:amd64', 'libhtml-format-perl', 'libeval-closure-perl', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'python-minimal', 'libxft2:amd64', 'bwa', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'libperl5.20', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libcupsimage2:amd64', 'libnamespace-clean-perl', 'dialign-tx-data', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'ttf-liberation', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libfile-slurp-tiny-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libpixman-1-0:amd64', 'proda', 'bedtools', 'primer3', 'libsocket-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libmodule-runtime-perl', 'maq', 'libxslt1.1:amd64', 'libmysqlclient18:amd64', 'libidn11:amd64', 'libxml-libxslt-perl', 'libjcode-pm-perl', 'libkrb5support0:amd64', 'libmoose-perl', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libmodule-runtime-conflicts-perl', 'libjs-jquery', 'libheap-perl', 'libbio-asn1-entrezgene-perl', 'libgmp10:amd64', 't-coffee', 'libnettle4:amd64', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'libp11-kit0:amd64', 'libyaml-libyaml-perl', 'libsoftware-license-perl', 'libpackage-stash-perl', 'libgomp1:amd64', 'libthai0:amd64', 'libxml-writer-perl', 'hmmer', 'libdigest-perl-md5-perl', 'libmagic1:amd64', 'libwww-perl', 'apache2-mpm-worker', 'apache2.2-common', 'libmath-derivative-perl', 'libdevel-stacktrace-perl', 'libxml-sax-base-perl', 'libgvc6', 'poppler-data', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'libxml2:amd64', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'libxml-dom-perl', 'openssl', 'fontconfig-config', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libmultidimensional-perl', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'libalgorithm-munkres-perl', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'ncbi-blast+', 'clustalw', 'libncbi6:amd64', 'libgvpr1', 'libgvpr2', 'libisccfg-export90', 'phyml', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'libapache2-mod-perl2', 'libpackage-deprecationmanager-perl', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'fonts-liberation', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libxau6:amd64', 'libclass-load-perl', 'iproute2', 'krb5-locales', 'exonerate', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libparams-util-perl', 'iproute', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'apache2.2-bin', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libyaml-0-2:amd64', 'libgdbm3:amd64', 'fontconfig', 'libace-perl', 'infernal', 'libclass-c3-xs-perl', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libbsd0:amd64', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'mafft', 'apache2-utils', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'libjpeg8:amd64', 'libtype-tiny-xs-perl', 'emboss-lib', 'libswitch-perl', 'libhttp-message-perl', 'libsub-exporter-perl', 'blast2', 'libio-sessiondata-perl', 'sgml-base', 'libhtml-parser-perl', 'libpod-readme-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libgnutls-deb0-28:amd64', 'libpangox-1.0-0:amd64', 'mime-support', 'libpango1.0-0:amd64', 'libvariable-magic-perl', 'ncbi-data', 'libharfbuzz0b:amd64', 'perl-tk', 'libbit-vector-perl', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libsm6:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'libsub-identify-perl', 'libio-socket-ip-perl', 'libpaper-utils', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxt6:amd64', 'libmath-spline-perl', 'libffi6:amd64', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libffi5:amd64', 'libindirect-perl', 'libxml-regexp-perl', 'libjbig2dec0', 'samtools', 'libxtables10', 'libtiff4:amd64', 'probalign', 'libio-pty-perl', 'libpathplan4', 'libcrypt-rc4-perl', 'libcgraph6', 'libxaw7:amd64', 'libyaml-syck-perl', 'libcgraph5', 'libgvc5', 'libsasl2-modules-db:amd64', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libxml-sax-expat-perl', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'libmailtools-perl', 'libdist-checkconflicts-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'libxml-sax-writer-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'apache2-bin', 'libsystemd-login0:amd64', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'shared-mime-info', 'libsoap-lite-perl', 'libx11-6:amd64', 'libtree-dagnode-perl', 'tigr-glimmer', 'mustang', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'bioperl', 'libparams-classify-perl', 'dialign-tx', 'libclass-tiny-perl', 'libxml-twig-perl', 'libxdmcp6:amd64', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libxml-parser-perl', 'libssl1.0.0:amd64', 'libregexp-common-perl', 'libclass-load-xs-perl', 'libgs9', 'libfreetype6:amd64', 'libxml-perl', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'liblwp-protocol-https-perl', 'perl', 'libatm1:amd64', 'libhttp-daemon-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'netbase', 'libxrender1:amd64', 'libjbig0:amd64', 'libruby1.9.1', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-partialdump-perl', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libhttp-negotiate-perl', 'libunicode-map-perl', 'libaprutil1:amd64', 'file', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'emboss-data', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libsvg-perl', 'libdevel-caller-perl', 'libbsd-resource-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'libsasl2-2:amd64', 'libcdt5', 'libcdt4', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl'] 2m53.7s DUMP: (Reading database ... 7975 files and directories currently installed.) 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Purging configuration files for sgml-base (1.26+nmu4) ... dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libpod-readme-perl which isn't installed Removing python2.7 (2.7.9-2+deb8u1) ... Purging configuration files for python2.7 (2.7.9-2+deb8u1) ... dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdate-manip-perl which isn't installed Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Purging configuration files for libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libpangox-1.0-0:amd64 (0.0.2-5) ... Purging configuration files for libpangox-1.0-0:amd64 (0.0.2-5) ... Removing mime-support (3.58) ... Purging configuration files for mime-support (3.58) ... dpkg: warning: ignoring request to remove libpango1.0-0 which isn't installed dpkg: warning: ignoring request to remove libvariable-magic-perl which isn't installed Removing ncbi-data (6.1.20120620-8) ... Purging configuration files for ncbi-data (6.1.20120620-8) ... Removing libharfbuzz0b:amd64 (0.9.35-2) ... Purging configuration files for libharfbuzz0b:amd64 (0.9.35-2) ... dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove libbit-vector-perl which isn't installed dpkg: warning: ignoring request to remove isc-dhcp-common which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Purging configuration files for libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed dpkg: warning: ignoring request to remove libxml-dom-xpath-perl which isn't installed Removing libsm6:amd64 (2:1.2.2-1+b1) ... Purging configuration files for libsm6:amd64 (2:1.2.2-1+b1) ... dpkg: warning: ignoring request to remove libdevel-globaldestruction-perl which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed Removing ifupdown (0.7.53.1) ... Purging configuration files for ifupdown (0.7.53.1) ... dpkg: warning: ignoring request to remove libsub-identify-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ip-perl which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Removing libpod-latex-perl (0.61-1) ... Purging configuration files for libpod-latex-perl (0.61-1) ... dpkg: warning: ignoring request to remove apache2-data which isn't installed dpkg: warning: ignoring request to remove libipc-run-perl which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-writeexcel-perl which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove libdata-optlist-perl which isn't installed dpkg: warning: ignoring request to remove libgs9-common which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove ttf-dejavu-core which isn't installed Removing libxt6:amd64 (1:1.1.4-1+b1) ... Purging configuration files for libxt6:amd64 (1:1.1.4-1+b1) ... dpkg: warning: ignoring request to remove libmath-spline-perl which isn't installed Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... Removing libijs-0.35:amd64 (0.35-10) ... Purging configuration files for libijs-0.35:amd64 (0.35-10) ... dpkg: warning: ignoring request to remove libhtml-tableextract-perl which isn't installed Removing libavahi-common3:amd64 (0.6.31-5) ... Purging configuration files for libavahi-common3:amd64 (0.6.31-5) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-render0:amd64 (1.10-3+b1) ... dpkg: warning: ignoring request to remove rename which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed Removing libffi5:amd64 (3.0.10-3) ... Purging configuration files for libffi5:amd64 (3.0.10-3) ... dpkg: warning: ignoring request to remove libindirect-perl which isn't installed dpkg: warning: ignoring request to remove libxml-regexp-perl which isn't installed Removing libjbig2dec0 (0.13-4~deb8u2) ... Purging configuration files for libjbig2dec0 (0.13-4~deb8u2) ... Removing samtools (0.1.19-1) ... Purging configuration files for samtools (0.1.19-1) ... Removing libxtables10 (1.4.21-2+b1) ... Purging configuration files for libxtables10 (1.4.21-2+b1) ... Removing libtiff4:amd64 (3.9.6-11) ... Purging configuration files for libtiff4:amd64 (3.9.6-11) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove libio-pty-perl which isn't installed Removing libpathplan4 (2.38.0-7) ... Purging configuration files for libpathplan4 (2.38.0-7) ... dpkg: warning: ignoring request to remove libcrypt-rc4-perl which isn't installed Removing libcgraph6 (2.38.0-7) ... Purging configuration files for libcgraph6 (2.38.0-7) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Purging configuration files for libxaw7:amd64 (2:1.0.12-2+b1) ... dpkg: warning: ignoring request to remove libyaml-syck-perl which isn't installed Removing libcgraph5 (2.26.3-14+deb7u2) ... Purging configuration files for libcgraph5 (2.26.3-14+deb7u2) ... Removing libgvc5 (2.26.3-14+deb7u2) ... Purging configuration files for libgvc5 (2.26.3-14+deb7u2) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Removing libpaper1:amd64 (1.1.24+nmu4) ... Purging configuration files for libpaper1:amd64 (1.1.24+nmu4) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Purging configuration files for libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing javascript-common (11) ... Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed Removing python2.7-minimal (2.7.9-2+deb8u1) ... Purging configuration files for python2.7-minimal (2.7.9-2+deb8u1) ... Removing libcups2:amd64 (1.7.5-11+deb8u2) ... Purging configuration files for libcups2:amd64 (1.7.5-11+deb8u2) ... dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpangoft2-1.0-0:amd64 (1.36.8-3) ... dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libdist-checkconflicts-perl which isn't installed Removing libdatrie1:amd64 (0.2.8-1) ... Purging configuration files for libdatrie1:amd64 (0.2.8-1) ... Removing libmodule-build-perl (0.421000-2+deb8u1) ... Purging configuration files for libmodule-build-perl (0.421000-2+deb8u1) ... Removing apache2 (2.4.10-10+deb8u12) ... Purging configuration files for apache2 (2.4.10-10+deb8u12) ... dpkg: warning: while removing apache2, directory '/var/www' not empty so not removed Removing libxcb1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb1:amd64 (1.10-3+b1) ... dpkg: warning: ignoring request to remove libxml-sax-writer-perl which isn't installed dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove libbareword-filehandles-perl which isn't installed dpkg: warning: ignoring request to remove libtext-soundex-perl which isn't installed Removing ca-certificates (20141019+deb8u3) ... Purging configuration files for ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing apache2-bin (2.4.10-10+deb8u12) ... Purging configuration files for apache2-bin (2.4.10-10+deb8u12) ... Removing libsystemd-login0:amd64 (215-17+deb8u7) ... Purging configuration files for libsystemd-login0:amd64 (215-17+deb8u7) ... dpkg: warning: ignoring request to remove liblog-message-simple-perl which isn't installed Removing libavahi-client3:amd64 (0.6.31-5) ... Purging configuration files for libavahi-client3:amd64 (0.6.31-5) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Purging configuration files for libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing shared-mime-info (1.3-1) ... Purging configuration files for shared-mime-info (1.3-1) ... dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Purging configuration files for libx11-6:amd64 (2:1.6.2-3+deb8u1) ... dpkg: warning: ignoring request to remove libtree-dagnode-perl which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-xs-perl which isn't installed Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove libclass-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+b1) ... dpkg: warning: ignoring request to remove libsvg-graph-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... dpkg: warning: ignoring request to remove libregexp-common-perl which isn't installed dpkg: warning: ignoring request to remove libclass-load-xs-perl which isn't installed Removing libgs9 (9.06~dfsg-2+deb8u7) ... Purging configuration files for libgs9 (9.06~dfsg-2+deb8u7) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Purging configuration files for libfreetype6:amd64 (2.5.2-3+deb8u2) ... dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libpostscript-perl which isn't installed Removing xml-core (0.13+nmu2) ... Purging configuration files for xml-core (0.13+nmu2) ... dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove perl which isn't installed Removing libatm1:amd64 (1:2.5.1-1.5) ... Purging configuration files for libatm1:amd64 (1:2.5.1-1.5) ... dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove ruby2.1 which isn't installed Removing x11-common (1:7.7+7) ... Purging configuration files for x11-common (1:7.7+7) ... dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed Removing liblua5.1-0:amd64 (5.1.5-7.1) ... Purging configuration files for liblua5.1-0:amd64 (5.1.5-7.1) ... Removing netbase (5.3) ... Purging configuration files for netbase (5.3) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Purging configuration files for libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libjbig0:amd64 (2.1-3.1) ... Purging configuration files for libjbig0:amd64 (2.1-3.1) ... Removing libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Purging configuration files for libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove librole-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed Removing libice6:amd64 (2:1.0.9-1+b1) ... Purging configuration files for libice6:amd64 (2:1.0.9-1+b1) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove libdevel-partialdump-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove lynx which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libunicode-map-perl which isn't installed Removing libaprutil1:amd64 (1.5.4-1) ... Purging configuration files for libaprutil1:amd64 (1.5.4-1) ... dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Purging configuration files for libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed Removing perl-modules (5.20.2-3+deb8u11) ... Purging configuration files for perl-modules (5.20.2-3+deb8u11) ... dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-caller-perl which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libsort-naturally-perl which isn't installed Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Purging configuration files for libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libcdt5 (2.38.0-7) ... Purging configuration files for libcdt5 (2.38.0-7) ... Removing libcdt4 (2.26.3-14+deb7u2) ... Purging configuration files for libcdt4 (2.26.3-14+deb7u2) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libspreadsheet-parseexcel-perl which isn't installed 2m53.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg', '--purge', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libyaml-perl', 'emboss', 'libpangoxft-1.0-0:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libmro-compat-perl', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libfile-listing-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'kalign', 'libxml-sax-perl', 'libprocps0:amd64', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'ruby1.9.1', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libgraph4', 'libgd3:amd64', 'libxext6:amd64', 'libhtml-format-perl', 'libeval-closure-perl', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'python-minimal', 'libxft2:amd64', 'bwa', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'libperl5.20', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libcupsimage2:amd64', 'libnamespace-clean-perl', 'dialign-tx-data', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'ttf-liberation', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libfile-slurp-tiny-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libpixman-1-0:amd64', 'proda', 'bedtools', 'primer3', 'libsocket-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libmodule-runtime-perl', 'maq', 'libxslt1.1:amd64', 'libmysqlclient18:amd64', 'libidn11:amd64', 'libxml-libxslt-perl', 'libjcode-pm-perl', 'libkrb5support0:amd64', 'libmoose-perl', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libmodule-runtime-conflicts-perl', 'libjs-jquery', 'libheap-perl', 'libbio-asn1-entrezgene-perl', 'libgmp10:amd64', 't-coffee', 'libnettle4:amd64', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'libp11-kit0:amd64', 'libyaml-libyaml-perl', 'libsoftware-license-perl', 'libpackage-stash-perl', 'libgomp1:amd64', 'libthai0:amd64', 'libxml-writer-perl', 'hmmer', 'libdigest-perl-md5-perl', 'libmagic1:amd64', 'libwww-perl', 'apache2-mpm-worker', 'apache2.2-common', 'libmath-derivative-perl', 'libdevel-stacktrace-perl', 'libxml-sax-base-perl', 'libgvc6', 'poppler-data', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'libxml2:amd64', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'libxml-dom-perl', 'openssl', 'fontconfig-config', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libmultidimensional-perl', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'libalgorithm-munkres-perl', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'ncbi-blast+', 'clustalw', 'libncbi6:amd64', 'libgvpr1', 'libgvpr2', 'libisccfg-export90', 'phyml', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'libapache2-mod-perl2', 'libpackage-deprecationmanager-perl', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'fonts-liberation', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libxau6:amd64', 'libclass-load-perl', 'iproute2', 'krb5-locales', 'exonerate', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libparams-util-perl', 'iproute', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'apache2.2-bin', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libyaml-0-2:amd64', 'libgdbm3:amd64', 'fontconfig', 'libace-perl', 'infernal', 'libclass-c3-xs-perl', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libbsd0:amd64', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'mafft', 'apache2-utils', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'libjpeg8:amd64', 'libtype-tiny-xs-perl', 'emboss-lib', 'libswitch-perl', 'libhttp-message-perl', 'libsub-exporter-perl', 'blast2', 'libio-sessiondata-perl', 'sgml-base', 'libhtml-parser-perl', 'libpod-readme-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libgnutls-deb0-28:amd64', 'libpangox-1.0-0:amd64', 'mime-support', 'libpango1.0-0:amd64', 'libvariable-magic-perl', 'ncbi-data', 'libharfbuzz0b:amd64', 'perl-tk', 'libbit-vector-perl', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libsm6:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'libsub-identify-perl', 'libio-socket-ip-perl', 'libpaper-utils', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxt6:amd64', 'libmath-spline-perl', 'libffi6:amd64', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libffi5:amd64', 'libindirect-perl', 'libxml-regexp-perl', 'libjbig2dec0', 'samtools', 'libxtables10', 'libtiff4:amd64', 'probalign', 'libio-pty-perl', 'libpathplan4', 'libcrypt-rc4-perl', 'libcgraph6', 'libxaw7:amd64', 'libyaml-syck-perl', 'libcgraph5', 'libgvc5', 'libsasl2-modules-db:amd64', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libxml-sax-expat-perl', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'libmailtools-perl', 'libdist-checkconflicts-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'libxml-sax-writer-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'apache2-bin', 'libsystemd-login0:amd64', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'shared-mime-info', 'libsoap-lite-perl', 'libx11-6:amd64', 'libtree-dagnode-perl', 'tigr-glimmer', 'mustang', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'bioperl', 'libparams-classify-perl', 'dialign-tx', 'libclass-tiny-perl', 'libxml-twig-perl', 'libxdmcp6:amd64', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libxml-parser-perl', 'libssl1.0.0:amd64', 'libregexp-common-perl', 'libclass-load-xs-perl', 'libgs9', 'libfreetype6:amd64', 'libxml-perl', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'liblwp-protocol-https-perl', 'perl', 'libatm1:amd64', 'libhttp-daemon-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'netbase', 'libxrender1:amd64', 'libjbig0:amd64', 'libruby1.9.1', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-partialdump-perl', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libhttp-negotiate-perl', 'libunicode-map-perl', 'libaprutil1:amd64', 'file', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'emboss-data', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libsvg-perl', 'libdevel-caller-perl', 'libbsd-resource-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'libsasl2-2:amd64', 'libcdt5', 'libcdt4', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl'] 2m53.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg', '--purge', 'libbio-samtools-perl'] 2m53.8s DUMP: dpkg: warning: ignoring request to remove libbio-samtools-perl which isn't installed 2m53.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg', '--purge', 'libbio-samtools-perl'] 2m53.8s INFO: Running scripts post_purge 2m53.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_purge_exceptions'] 2m53.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_purge_exceptions'] 2m53.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg', '--purge', '--pending'] 2m53.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg', '--purge', '--pending'] 2m53.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg', '--remove', '--pending'] 2m53.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg', '--remove', '--pending'] 2m53.8s INFO: Running scripts post_test 2m53.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_test_exceptions'] 2m53.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'tmp/scripts/post_test_exceptions'] 2m53.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 2m54.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 2m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg-divert', '--list'] 2m54.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m54.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'dpkg-divert', '--list'] 2m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', 'clean'] 2m54.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8VwU1z', 'apt-get', 'clean'] 2m54.4s DEBUG: Recording chroot state 2m56.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/run/shm'] 2m56.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/run/shm'] 2m56.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/console'] 2m56.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/console'] 2m56.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/ptmx'] 2m56.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/ptmx'] 2m56.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/pts'] 2m56.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/dev/pts'] 2m56.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/proc'] 2m56.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8VwU1z/proc'] 2m56.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 2m56.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8VwU1z'] 2m56.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp8VwU1z 2m56.2s INFO: PASS: Upgrading between Debian distributions. 2m56.2s INFO: PASS: All tests. 2m56.2s INFO: piuparts run ends. ret=0 End: 2018-09-15 15:04:20 UTC