Start: 2019-04-27 10:44:21 UTC [wheezy] Package: libtfbs-perl Source: libtfbs-perl (0.5.svn.20100421-1) Version: 0.5.svn.20100421-1+b1 Installed-Size: 474 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.14.2-3), perlapi-5.14.2, libc6 (>= 2.4), pdl, bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description: scanning DNA sequence with a position weight matrix Homepage: http://tfbs.genereg.net Description-md5: 09989d886916236509d34feced92018d Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, role::devel-lib Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.5.svn.20100421-1+b1_amd64.deb Size: 196790 MD5sum: 52ab6b6fbe802e17635b195777d581dd SHA1: 2dca28d4a958444b3e7a9cb08abfde33f462366f SHA256: 4e11430ed6b6062fef4fabe8b1cc06163ca0ec1fbe500f43ba9c8945e4f2b65e [jessie] Package: libtfbs-perl Source: libtfbs-perl (0.6.1+dfsg-1) Version: 0.6.1+dfsg-1+b1 Installed-Size: 720 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.20.0-4), perlapi-5.20.0, libc6 (>= 2.14), pdl, bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description: scanning DNA sequence with a position weight matrix Homepage: http://tfbs.genereg.net Description-md5: 09989d886916236509d34feced92018d Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, role::devel-lib Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.6.1+dfsg-1+b1_amd64.deb Size: 233510 MD5sum: c468df37a477f4d1431542623e00ce16 SHA1: 892679ae52b122c5534da12151e28cf9e238823f SHA256: b5f53c9c7d1bc7cdf40f8b76bd264cb142de6fbafbfbb30ca9cec5dbd39fbbe6 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie-rcmd/reference-chroot-metadata.dat --apt libtfbs-perl=0.6.1+dfsg-1+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.99~201904261400~0.98-45-g2854cd58 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie-rcmd/reference-chroot-metadata.dat --apt libtfbs-perl=0.6.1+dfsg-1+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpxPPtK8 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpxPPtK8 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m2.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/proc'] 0m2.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/proc'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/pts'] 0m2.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/pts'] 0m2.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/ptmx'] 0m2.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/ptmx'] 0m2.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/console'] 0m2.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/console'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/run/shm'] 0m2.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/run/shm'] 0m2.6s DEBUG: sources.list: deb http://archive.debian.org/debian wheezy main 0m2.6s DEBUG: Created policy-rc.d and chmodded it. 0m2.6s DEBUG: Created resolv.conf. 0m2.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpxPPtK8/tmp/scripts/ 0m2.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpxPPtK8/tmp/scripts/ 0m2.6s INFO: Running scripts post_chroot_unpack 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.6s DUMP: Creating /etc/apt/apt.conf.d/unauthenticated-wheezy ... # The Release file is not getting updated. Acquire::Check-Valid-Until "false"; 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', 'update'] 0m8.2s DUMP: Get:1 http://archive.debian.org wheezy Release.gpg [2373 B] Get:2 http://archive.debian.org wheezy Release [191 kB] Get:3 http://archive.debian.org wheezy/main Translation-en [3846 kB] Get:4 http://archive.debian.org wheezy/main amd64 Packages [7634 kB] Fetched 11.7 MB in 4s (2752 kB/s) Reading package lists... 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', 'update'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', '-yf', 'dist-upgrade'] 0m8.5s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', '-yf', 'dist-upgrade'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.7s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.7s INFO: Running scripts post_setup 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_dummy_users'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_dummy_users'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_forbid_home'] 0m9.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_forbid_home'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m11.0s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: ucf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 70.8 kB of archives. After this operation, 236 kB of additional disk space will be used. Get:1 http://archive.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.8 kB in 0s (99.0 kB/s) Selecting previously unselected package ucf. (Reading database ... 6639 files and directories currently installed.) Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up ucf (3.0025+nmu3) ... 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_minimize'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_minimize'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_zz_backports'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_setup_zz_backports'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.0s DUMP: install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie-rcmd/reference-chroot-metadata.dat 0m11.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 0m12.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 0m12.5s INFO: Running scripts is_testable 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/is_testable_uninstallable'] 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/is_testable_uninstallable'] 0m12.5s INFO: Running scripts pre_test 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_test_exceptions'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_test_exceptions'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_test_root_password'] 0m12.6s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_test_root_password'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 0m12.6s DUMP: Package: libtfbs-perl Source: libtfbs-perl (0.5.svn.20100421-1) Version: 0.5.svn.20100421-1+b1 Installed-Size: 474 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.14.2-3), perlapi-5.14.2, libc6 (>= 2.4), pdl, bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description-en: scanning DNA sequence with a position weight matrix The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences. . If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136". Homepage: http://tfbs.genereg.net Description-md5: 09989d886916236509d34feced92018d Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, role::devel-lib Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.5.svn.20100421-1+b1_amd64.deb Size: 196790 MD5sum: 52ab6b6fbe802e17635b195777d581dd SHA1: 2dca28d4a958444b3e7a9cb08abfde33f462366f SHA256: 4e11430ed6b6062fef4fabe8b1cc06163ca0ec1fbe500f43ba9c8945e4f2b65e 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 0m12.6s INFO: apt-cache knows about the following packages: libtfbs-perl 0m12.6s INFO: Running scripts pre_install 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_database-server'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_database-server'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_exceptions'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_exceptions'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_extras'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_extras'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'policy'] 0m12.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://archive.debian.org/debian/ wheezy/main Translation-en 500 http://archive.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin archive.debian.org Pinned packages: 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'policy'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'policy', 'libtfbs-perl'] 0m12.7s DUMP: libtfbs-perl: Installed: (none) Candidate: 0.5.svn.20100421-1+b1 Version table: 0.5.svn.20100421-1+b1 0 500 http://archive.debian.org/debian/ wheezy/main amd64 Packages 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'policy', 'libtfbs-perl'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', '-y', 'install', 'libtfbs-perl'] 2m39.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser amap-align apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalw dbus dialign emboss emboss-data emboss-lib exonerate fftw2 file fontconfig fontconfig-config fonts-droid fonts-liberation freeglut3 ghostscript graphviz gsfonts hmmer ifupdown infernal iproute kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarray-compare-perl libatm1 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcap2 libcarp-clan-perl libcdt4 libcgraph5 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-ssleay-perl libcsiro0 libcups2 libcupsimage2 libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-globaldestruction-perl libdevel-partialdump-perl libdevel-symdump-perl libdrm-intel1 libdrm-nouveau1a libdrm-radeon1 libdrm2 libencode-locale-perl liberror-perl libeval-closure-perl libexpat1 libfcgi-perl libffi5 libfile-listing-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgcrypt11 libgd-gd2-perl libgd2-xpm libgdbm3 libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libglu1-mesa libgnutls26 libgpg-error0 libgpm2 libgraph-perl libgraph4 libgraphviz-perl libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libgvc5 libgvpr1 libhdf4-0-alt libheap-perl libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libibverbs1 libice6 libidn11 libijs-0.35 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg8 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblist-moreutils-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libmysqlclient18 libnamespace-clean-perl libncbi6 libncursesw5 libnet-http-perl libnet-ssleay-perl libnuma1 libole-storage-lite-perl libopengl-perl libopenmpi1.3 libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre3 libperl5.14 libpixman-1-0 libplplot11 libpng12-0 libpostscript-perl libpq5 libprocps0 libproj0 libqhull5 libqsastime0 libquadmath0 libruby1.9.1 libsasl2-2 libsasl2-modules libset-scalar-perl libsm6 libsoap-lite-perl libsocket-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libsub-exporter-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libswitch-perl libsystemd-login0 libtask-weaken-perl libtasn1-3 libterm-readkey-perl libterm-readline-gnu-perl libthai-data libthai0 libtie-ixhash-perl libtiff4 libtimedate-perl libtorque2 libtree-dagnode-perl libtry-tiny-perl libunicode-map-perl liburi-perl libvariable-magic-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-glx0 libxcb-render0 libxcb-shm0 libxcb1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxi6 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxxf86vm1 libyaml-0-2 libyaml-perl libyaml-syck-perl lynx lynx-cur mafft maq mime-support muscle mysql-common ncbi-data netbase openssl pdl perl perl-doc perl-modules perl-tk phyml poppler-data primer3 probcons procps proj-data psmisc ruby ruby1.9.1 samtools sgml-base shared-mime-info sim4 ssl-cert t-coffee tigr-glimmer tm-align ttf-dejavu-core ttf-liberation wise x11-common xml-core Suggested packages: www-browser apache2-doc apache2-suexec apache2-suexec-custom filo groff-base gmap paml molphy phylip ensembl libvibrant6a ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 bowtie-examples clustalx seaview dbus-x11 emboss-doc emboss-test embassy fftw-dev mpi-defaults-bin ghostscript-cups ghostscript-x hpijs graphviz-doc hmmer-doc isc-dhcp-client dhcp-client ppp rdnssd net-tools iproute-doc libmath-random-perl libxml-sax-expatxs-perl cups-common rng-tools libgd-tools libglide3 gpm gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html krb5-doc krb5-user libhdf4-doc libhdf4-alt-dev hdf4-tools libnetcdf4 libdata-dump-perl libjasper-runtime liblcms2-utils libmime-base64-perl uuid ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp libscalar-number-perl pciutils plplot11-driver-xwin plplot11-driver-gd plplot11-driver-cairo plplot11-driver-qt plplot11-driver-wxwidgets plplot-tcl proj-bin libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal libmime-lite-perl libnet-jabber-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl libpgplot-perl netpbm imagemagick libastro-fits-header-perl libinline-perl libplplot-dev doc-base libextutils-f77-perl libdevel-repl-perl make man-browser groff libpod-plainer-perl poppler-utils fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-unfonts-core ncbi-epcr probcons-extra ri ruby-dev ruby1.9.1-examples ri1.9.1 ruby1.9.1-dev ruby-switch python sgml-base-doc openssl-blacklist boxshade t-coffee-doc t-coffee-examples dialign-tx poa proda pymol rasmol wise-doc debhelper Recommended packages: libstorable-perl The following NEW packages will be installed: adduser amap-align apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalw dbus dialign emboss emboss-data emboss-lib exonerate fftw2 file fontconfig fontconfig-config fonts-droid fonts-liberation freeglut3 ghostscript graphviz gsfonts hmmer ifupdown infernal iproute kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarray-compare-perl libatm1 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcap2 libcarp-clan-perl libcdt4 libcgraph5 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-ssleay-perl libcsiro0 libcups2 libcupsimage2 libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-globaldestruction-perl libdevel-partialdump-perl libdevel-symdump-perl libdrm-intel1 libdrm-nouveau1a libdrm-radeon1 libdrm2 libencode-locale-perl liberror-perl libeval-closure-perl libexpat1 libfcgi-perl libffi5 libfile-listing-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgcrypt11 libgd-gd2-perl libgd2-xpm libgdbm3 libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libglu1-mesa libgnutls26 libgpg-error0 libgpm2 libgraph-perl libgraph4 libgraphviz-perl libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libgvc5 libgvpr1 libhdf4-0-alt libheap-perl libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libibverbs1 libice6 libidn11 libijs-0.35 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg8 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblist-moreutils-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libmysqlclient18 libnamespace-clean-perl libncbi6 libncursesw5 libnet-http-perl libnet-ssleay-perl libnuma1 libole-storage-lite-perl libopengl-perl libopenmpi1.3 libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre3 libperl5.14 libpixman-1-0 libplplot11 libpng12-0 libpostscript-perl libpq5 libprocps0 libproj0 libqhull5 libqsastime0 libquadmath0 libruby1.9.1 libsasl2-2 libsasl2-modules libset-scalar-perl libsm6 libsoap-lite-perl libsocket-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libsub-exporter-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libswitch-perl libsystemd-login0 libtask-weaken-perl libtasn1-3 libterm-readkey-perl libterm-readline-gnu-perl libtfbs-perl libthai-data libthai0 libtie-ixhash-perl libtiff4 libtimedate-perl libtorque2 libtree-dagnode-perl libtry-tiny-perl libunicode-map-perl liburi-perl libvariable-magic-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-glx0 libxcb-render0 libxcb-shm0 libxcb1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxi6 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxxf86vm1 libyaml-0-2 libyaml-perl libyaml-syck-perl lynx lynx-cur mafft maq mime-support muscle mysql-common ncbi-data netbase openssl pdl perl perl-doc perl-modules perl-tk phyml poppler-data primer3 probcons procps proj-data psmisc ruby ruby1.9.1 samtools sgml-base shared-mime-info sim4 ssl-cert t-coffee tigr-glimmer tm-align ttf-dejavu-core ttf-liberation wise x11-common xml-core 0 upgraded, 337 newly installed, 0 to remove and 0 not upgraded. Need to get 203 MB of archives. After this operation, 816 MB of additional disk space will be used. Get:1 http://archive.debian.org/debian/ wheezy/main iproute amd64 20120521-3+b3 [459 kB] Get:2 http://archive.debian.org/debian/ wheezy/main ifupdown amd64 0.7.8 [64.9 kB] Get:3 http://archive.debian.org/debian/ wheezy/main libgdbm3 amd64 1.8.3-11 [46.9 kB] Get:4 http://archive.debian.org/debian/ wheezy/main libncursesw5 amd64 5.9-10 [141 kB] Get:5 http://archive.debian.org/debian/ wheezy/main libprocps0 amd64 1:3.3.3-3 [58.1 kB] Get:6 http://archive.debian.org/debian/ wheezy/main libssl1.0.0 amd64 1.0.1e-2+deb7u20 [1263 kB] Get:7 http://archive.debian.org/debian/ wheezy/main libcap2 amd64 1:2.22-1.2 [13.6 kB] Get:8 http://archive.debian.org/debian/ wheezy/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:9 http://archive.debian.org/debian/ wheezy/main libgcrypt11 amd64 1.5.0-5+deb7u4 [301 kB] Get:10 http://archive.debian.org/debian/ wheezy/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:11 http://archive.debian.org/debian/ wheezy/main libtasn1-3 amd64 2.13-2+deb7u2 [67.8 kB] Get:12 http://archive.debian.org/debian/ wheezy/main libgnutls26 amd64 2.12.20-8+deb7u5 [620 kB] Get:13 http://archive.debian.org/debian/ wheezy/main libgpm2 amd64 1.20.4-6 [35.8 kB] Get:14 http://archive.debian.org/debian/ wheezy/main libkeyutils1 amd64 1.5.5-3+deb7u1 [8664 B] Get:15 http://archive.debian.org/debian/ wheezy/main libkrb5support0 amd64 1.10.1+dfsg-5+deb7u7 [50.5 kB] Get:16 http://archive.debian.org/debian/ wheezy/main libk5crypto3 amd64 1.10.1+dfsg-5+deb7u7 [113 kB] Get:17 http://archive.debian.org/debian/ wheezy/main libkrb5-3 amd64 1.10.1+dfsg-5+deb7u7 [394 kB] Get:18 http://archive.debian.org/debian/ wheezy/main libgssapi-krb5-2 amd64 1.10.1+dfsg-5+deb7u7 [150 kB] Get:19 http://archive.debian.org/debian/ wheezy/main libidn11 amd64 1.25-2 [178 kB] Get:20 http://archive.debian.org/debian/ wheezy/main libsasl2-2 amd64 2.1.25.dfsg1-6+deb7u1 [120 kB] Get:21 http://archive.debian.org/debian/ wheezy/main libldap-2.4-2 amd64 2.4.31-2+deb7u2 [243 kB] Get:22 http://archive.debian.org/debian/ wheezy/main libmagic1 amd64 5.11-2+deb7u8 [205 kB] Get:23 http://archive.debian.org/debian/ wheezy/main libpcre3 amd64 1:8.30-5 [242 kB] Get:24 http://archive.debian.org/debian/ wheezy/main libsqlite3-0 amd64 3.7.13-1+deb7u2 [454 kB] Get:25 http://archive.debian.org/debian/ wheezy/main libxml2 amd64 2.8.0+dfsg1-7+wheezy5 [906 kB] Get:26 http://archive.debian.org/debian/ wheezy/main bedtools amd64 2.16.1-1 [434 kB] Get:27 http://archive.debian.org/debian/ wheezy/main libdrm2 amd64 2.4.40-1~deb7u2 [459 kB] Get:28 http://archive.debian.org/debian/ wheezy/main libglapi-mesa amd64 8.0.5-4+deb7u2 [46.8 kB] Get:29 http://archive.debian.org/debian/ wheezy/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:30 http://archive.debian.org/debian/ wheezy/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:31 http://archive.debian.org/debian/ wheezy/main libxcb1 amd64 1.8.1-2+deb7u1 [50.2 kB] Get:32 http://archive.debian.org/debian/ wheezy/main libx11-data all 2:1.5.0-1+deb7u2 [194 kB] Get:33 http://archive.debian.org/debian/ wheezy/main libx11-6 amd64 2:1.5.0-1+deb7u2 [901 kB] Get:34 http://archive.debian.org/debian/ wheezy/main libx11-xcb1 amd64 2:1.5.0-1+deb7u2 [139 kB] Get:35 http://archive.debian.org/debian/ wheezy/main libxcb-glx0 amd64 1.8.1-2+deb7u1 [32.2 kB] Get:36 http://archive.debian.org/debian/ wheezy/main libxfixes3 amd64 1:5.0-4+deb7u1 [21.3 kB] Get:37 http://archive.debian.org/debian/ wheezy/main libxdamage1 amd64 1:1.1.3-2 [14.3 kB] Get:38 http://archive.debian.org/debian/ wheezy/main libxext6 amd64 2:1.3.1-2+deb7u1 [54.8 kB] Get:39 http://archive.debian.org/debian/ wheezy/main libxxf86vm1 amd64 1:1.1.2-1+deb7u1 [19.5 kB] Get:40 http://archive.debian.org/debian/ wheezy/main libgl1-mesa-glx amd64 8.0.5-4+deb7u2 [134 kB] Get:41 http://archive.debian.org/debian/ wheezy/main libxi6 amd64 2:1.6.1-1+deb7u1 [75.7 kB] Get:42 http://archive.debian.org/debian/ wheezy/main freeglut3 amd64 2.6.0-4 [141 kB] Get:43 http://archive.debian.org/debian/ wheezy/main libatm1 amd64 1:2.5.1-1.5 [73.3 kB] Get:44 http://archive.debian.org/debian/ wheezy/main libavahi-common-data amd64 0.6.31-2 [135 kB] Get:45 http://archive.debian.org/debian/ wheezy/main libavahi-common3 amd64 0.6.31-2 [54.6 kB] Get:46 http://archive.debian.org/debian/ wheezy/main libdbus-1-3 amd64 1.6.8-1+deb7u6 [174 kB] Get:47 http://archive.debian.org/debian/ wheezy/main libavahi-client3 amd64 0.6.31-2 [59.5 kB] Get:48 http://archive.debian.org/debian/ wheezy/main libbsd0 amd64 0.4.2-1 [59.3 kB] Get:49 http://archive.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:50 http://archive.debian.org/debian/ wheezy/main libfreetype6 amd64 2.4.9-1.1+deb7u3 [452 kB] Get:51 http://archive.debian.org/debian/ wheezy/main ttf-dejavu-core all 2.33-3 [1021 kB] Get:52 http://archive.debian.org/debian/ wheezy/main fontconfig-config all 2.9.0-7.1 [233 kB] Get:53 http://archive.debian.org/debian/ wheezy/main libfontconfig1 amd64 2.9.0-7.1 [300 kB] Get:54 http://archive.debian.org/debian/ wheezy/main libpixman-1-0 amd64 0.26.0-4+deb7u2 [427 kB] Get:55 http://archive.debian.org/debian/ wheezy/main libpng12-0 amd64 1.2.49-1+deb7u2 [191 kB] Get:56 http://archive.debian.org/debian/ wheezy/main libxcb-render0 amd64 1.8.1-2+deb7u1 [18.6 kB] Get:57 http://archive.debian.org/debian/ wheezy/main libxcb-shm0 amd64 1.8.1-2+deb7u1 [10.4 kB] Get:58 http://archive.debian.org/debian/ wheezy/main libxrender1 amd64 1:0.9.7-1+deb7u2 [32.9 kB] Get:59 http://archive.debian.org/debian/ wheezy/main libcairo2 amd64 1.12.2-3 [912 kB] Get:60 http://archive.debian.org/debian/ wheezy/main libcups2 amd64 1.5.3-5+deb7u6 [256 kB] Get:61 http://archive.debian.org/debian/ wheezy/main libjpeg8 amd64 8d-1+deb7u1 [138 kB] Get:62 http://archive.debian.org/debian/ wheezy/main libjbig0 amd64 2.0-2+deb7u1 [32.6 kB] Get:63 http://archive.debian.org/debian/ wheezy/main libtiff4 amd64 3.9.6-11 [202 kB] Get:64 http://archive.debian.org/debian/ wheezy/main libcupsimage2 amd64 1.5.3-5+deb7u6 [138 kB] Get:65 http://archive.debian.org/debian/ wheezy/main libdatrie1 amd64 0.2.5-3 [28.6 kB] Get:66 http://archive.debian.org/debian/ wheezy/main libpciaccess0 amd64 0.13.1-2 [46.7 kB] Get:67 http://archive.debian.org/debian/ wheezy/main libdrm-intel1 amd64 2.4.40-1~deb7u2 [497 kB] Get:68 http://archive.debian.org/debian/ wheezy/main libdrm-nouveau1a amd64 2.4.40-1~deb7u2 [448 kB] Get:69 http://archive.debian.org/debian/ wheezy/main libdrm-radeon1 amd64 2.4.40-1~deb7u2 [457 kB] Get:70 http://archive.debian.org/debian/ wheezy/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:71 http://archive.debian.org/debian/ wheezy/main libxpm4 amd64 1:3.5.10-1 [49.4 kB] Get:72 http://archive.debian.org/debian/ wheezy/main libgd2-xpm amd64 2.0.36~rc1~dfsg-6.1+deb7u2 [234 kB] Get:73 http://archive.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:74 http://archive.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:75 http://archive.debian.org/debian/ wheezy/main libglib2.0-0 amd64 2.33.12+really2.32.4-5 [1838 kB] Get:76 http://archive.debian.org/debian/ wheezy/main libglu1-mesa amd64 8.0.5-4+deb7u2 [191 kB] Get:77 http://archive.debian.org/debian/ wheezy/main x11-common all 1:7.7+3~deb7u1 [284 kB] Get:78 http://archive.debian.org/debian/ wheezy/main libice6 amd64 2:1.0.8-2 [63.1 kB] Get:79 http://archive.debian.org/debian/ wheezy/main libjasper1 amd64 1.900.1-13+deb7u4 [160 kB] Get:80 http://archive.debian.org/debian/ wheezy/main liblcms2-2 amd64 2.2+git20110628-2.2+deb7u1 [144 kB] Get:81 http://archive.debian.org/debian/ wheezy/main libltdl7 amd64 2.4.2-1.1 [352 kB] Get:82 http://archive.debian.org/debian/ wheezy/main mysql-common all 5.5.47-0+deb7u1 [81.9 kB] Get:83 http://archive.debian.org/debian/ wheezy/main libmysqlclient18 amd64 5.5.47-0+deb7u1 [686 kB] Get:84 http://archive.debian.org/debian/ wheezy/main ncbi-data all 6.1.20120620-2 [5893 kB] Get:85 http://archive.debian.org/debian/ wheezy/main libncbi6 amd64 6.1.20120620-2 [4887 kB] Get:86 http://archive.debian.org/debian/ wheezy/main libthai-data all 0.1.18-2 [154 kB] Get:87 http://archive.debian.org/debian/ wheezy/main libthai0 amd64 0.1.18-2 [42.3 kB] Get:88 http://archive.debian.org/debian/ wheezy/main libxft2 amd64 2.3.1-1 [61.0 kB] Get:89 http://archive.debian.org/debian/ wheezy/main fontconfig amd64 2.9.0-7.1 [348 kB] Get:90 http://archive.debian.org/debian/ wheezy/main libpango1.0-0 amd64 1.30.0-1 [461 kB] Get:91 http://archive.debian.org/debian/ wheezy/main libpaper1 amd64 1.1.24+nmu2 [22.0 kB] Get:92 http://archive.debian.org/debian/ wheezy/main libsm6 amd64 2:1.2.1-2 [34.2 kB] Get:93 http://archive.debian.org/debian/ wheezy/main libxt6 amd64 1:1.1.3-1+deb7u1 [212 kB] Get:94 http://archive.debian.org/debian/ wheezy/main libxmu6 amd64 2:1.1.1-1 [66.6 kB] Get:95 http://archive.debian.org/debian/ wheezy/main libxaw7 amd64 2:1.0.10-2 [226 kB] Get:96 http://archive.debian.org/debian/ wheezy/main libxslt1.1 amd64 1.1.26-14.1 [254 kB] Get:97 http://archive.debian.org/debian/ wheezy/main libyaml-0-2 amd64 0.1.4-2+deb7u5 [58.3 kB] Get:98 http://archive.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:99 http://archive.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:100 http://archive.debian.org/debian/ wheezy/main perl-modules all 5.14.2-21+deb7u3 [3444 kB] Get:101 http://archive.debian.org/debian/ wheezy/main perl amd64 5.14.2-21+deb7u3 [4429 kB] Get:102 http://archive.debian.org/debian/ wheezy/main libyaml-syck-perl amd64 1.20-1 [75.5 kB] Get:103 http://archive.debian.org/debian/ wheezy/main mafft amd64 6.864-1 [799 kB] Get:104 http://archive.debian.org/debian/ wheezy/main poppler-data all 0.4.5-10 [1479 kB] Get:105 http://archive.debian.org/debian/ wheezy/main sgml-base all 1.26+nmu4 [14.6 kB] Get:106 http://archive.debian.org/debian/ wheezy/main wise amd64 2.4.1-10 [1075 kB] Get:107 http://archive.debian.org/debian/ wheezy/main libsystemd-login0 amd64 44-11+deb7u4 [29.5 kB] Get:108 http://archive.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:109 http://archive.debian.org/debian/ wheezy/main netbase all 5.0 [20.1 kB] Get:110 http://archive.debian.org/debian/ wheezy/main procps amd64 1:3.3.3-3 [252 kB] Get:111 http://archive.debian.org/debian/ wheezy/main file amd64 5.11-2+deb7u8 [53.4 kB] Get:112 http://archive.debian.org/debian/ wheezy/main krb5-locales all 1.10.1+dfsg-5+deb7u7 [1504 kB] Get:113 http://archive.debian.org/debian/ wheezy/main mime-support all 3.52-1+deb7u1 [35.5 kB] Get:114 http://archive.debian.org/debian/ wheezy/main amap-align amd64 2.2-3 [144 kB] Get:115 http://archive.debian.org/debian/ wheezy/main libapr1 amd64 1.4.6-3+deb7u1 [106 kB] Get:116 http://archive.debian.org/debian/ wheezy/main libaprutil1 amd64 1.4.1-3 [89.8 kB] Get:117 http://archive.debian.org/debian/ wheezy/main libaprutil1-dbd-sqlite3 amd64 1.4.1-3 [19.0 kB] Get:118 http://archive.debian.org/debian/ wheezy/main libaprutil1-ldap amd64 1.4.1-3 [16.6 kB] Get:119 http://archive.debian.org/debian/ wheezy/main apache2.2-bin amd64 2.2.22-13+deb7u6 [793 kB] Get:120 http://archive.debian.org/debian/ wheezy/main apache2-utils amd64 2.2.22-13+deb7u6 [164 kB] Get:121 http://archive.debian.org/debian/ wheezy/main apache2.2-common amd64 2.2.22-13+deb7u6 [294 kB] Get:122 http://archive.debian.org/debian/ wheezy/main apache2-mpm-worker amd64 2.2.22-13+deb7u6 [2236 B] Get:123 http://archive.debian.org/debian/ wheezy/main apache2 amd64 2.2.22-13+deb7u6 [1438 B] Get:124 http://archive.debian.org/debian/ wheezy/main libio-string-perl all 1.08-2 [12.0 kB] Get:125 http://archive.debian.org/debian/ wheezy/main libdata-stag-perl all 0.11-2 [509 kB] Get:126 http://archive.debian.org/debian/ wheezy/main libbio-perl-perl all 1.6.901-3 [6143 kB] Get:127 http://archive.debian.org/debian/ wheezy/main bioperl all 1.6.901-3 [467 kB] Get:128 http://archive.debian.org/debian/ wheezy/main libbio-perl-run-perl all 1.6.9-1 [883 kB] Get:129 http://archive.debian.org/debian/ wheezy/main bioperl-run all 1.6.9-1 [46.3 kB] Get:130 http://archive.debian.org/debian/ wheezy/main blast2 amd64 1:2.2.26.20120620-2 [682 kB] Get:131 http://archive.debian.org/debian/ wheezy/main bwa amd64 0.6.2-1 [156 kB] Get:132 http://archive.debian.org/debian/ wheezy/main openssl amd64 1.0.1e-2+deb7u20 [702 kB] Get:133 http://archive.debian.org/debian/ wheezy/main ca-certificates all 20130119+deb7u1 [210 kB] Get:134 http://archive.debian.org/debian/ wheezy/main clustalw amd64 2.1+lgpl-2 [346 kB] Get:135 http://archive.debian.org/debian/ wheezy/main dbus amd64 1.6.8-1+deb7u6 [404 kB] Get:136 http://archive.debian.org/debian/ wheezy/main dialign amd64 2.2.1-5 [205 kB] Get:137 http://archive.debian.org/debian/ wheezy/main libhpdf-2.2.1 amd64 2.2.1-1 [504 kB] Get:138 http://archive.debian.org/debian/ wheezy/main libpq5 amd64 9.1.21-0+deb7u1 [140 kB] Get:139 http://archive.debian.org/debian/ wheezy/main emboss-lib amd64 6.4.0-2 [2823 kB] Get:140 http://archive.debian.org/debian/ wheezy/main emboss-data all 6.4.0-2 [39.0 MB] Get:141 http://archive.debian.org/debian/ wheezy/main emboss amd64 6.4.0-2 [1009 kB] Get:142 http://archive.debian.org/debian/ wheezy/main exonerate amd64 2.2.0-6 [3053 kB] Get:143 http://archive.debian.org/debian/ wheezy/main fonts-droid all 20111207+git-1 [4312 kB] Get:144 http://archive.debian.org/debian/ wheezy/main fonts-liberation all 1.07.2-6 [1323 kB] Get:145 http://archive.debian.org/debian/ wheezy/main libijs-0.35 amd64 0.35-8 [20.4 kB] Get:146 http://archive.debian.org/debian/ wheezy/main libjbig2dec0 amd64 0.11+20120125-1 [51.8 kB] Get:147 http://archive.debian.org/debian/ wheezy/main libgs9-common all 9.05~dfsg-6.3+deb7u2 [1977 kB] Get:148 http://archive.debian.org/debian/ wheezy/main libgs9 amd64 9.05~dfsg-6.3+deb7u2 [1844 kB] Get:149 http://archive.debian.org/debian/ wheezy/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2 [3364 kB] Get:150 http://archive.debian.org/debian/ wheezy/main ghostscript amd64 9.05~dfsg-6.3+deb7u2 [80.3 kB] Get:151 http://archive.debian.org/debian/ wheezy/main libcdt4 amd64 2.26.3-14+deb7u2 [60.0 kB] Get:152 http://archive.debian.org/debian/ wheezy/main libcgraph5 amd64 2.26.3-14+deb7u2 [88.1 kB] Get:153 http://archive.debian.org/debian/ wheezy/main libgraph4 amd64 2.26.3-14+deb7u2 [74.0 kB] Get:154 http://archive.debian.org/debian/ wheezy/main libpathplan4 amd64 2.26.3-14+deb7u2 [65.3 kB] Get:155 http://archive.debian.org/debian/ wheezy/main libxdot4 amd64 2.26.3-14+deb7u2 [54.4 kB] Get:156 http://archive.debian.org/debian/ wheezy/main libgvc5 amd64 2.26.3-14+deb7u2 [544 kB] Get:157 http://archive.debian.org/debian/ wheezy/main libgvpr1 amd64 2.26.3-14+deb7u2 [244 kB] Get:158 http://archive.debian.org/debian/ wheezy/main graphviz amd64 2.26.3-14+deb7u2 [378 kB] Get:159 http://archive.debian.org/debian/ wheezy/main hmmer amd64 3.0-4 [2217 kB] Get:160 http://archive.debian.org/debian/ wheezy/main infernal amd64 1.0.2-2 [4859 kB] Get:161 http://archive.debian.org/debian/ wheezy/main kalign amd64 1:2.03+20110620-2 [94.8 kB] Get:162 http://archive.debian.org/debian/ wheezy/main liberror-perl all 0.17-1 [23.6 kB] Get:163 http://archive.debian.org/debian/ wheezy/main libipc-sharelite-perl amd64 0.17-2 [27.3 kB] Get:164 http://archive.debian.org/debian/ wheezy/main libcache-cache-perl all 1.06-2 [79.3 kB] Get:165 http://archive.debian.org/debian/ wheezy/main libace-perl amd64 1.92-2+b2 [351 kB] Get:166 http://archive.debian.org/debian/ wheezy/main libalgorithm-c3-perl all 0.08-1 [11.8 kB] Get:167 http://archive.debian.org/debian/ wheezy/main libalgorithm-diff-perl all 1.19.02-2 [51.5 kB] Get:168 http://archive.debian.org/debian/ wheezy/main libalgorithm-diff-xs-perl amd64 0.04-2+b1 [12.9 kB] Get:169 http://archive.debian.org/debian/ wheezy/main libalgorithm-munkres-perl all 0.08-2 [12.5 kB] Get:170 http://archive.debian.org/debian/ wheezy/main libperl5.14 amd64 5.14.2-21+deb7u3 [1188 B] Get:171 http://archive.debian.org/debian/ wheezy/main libdevel-symdump-perl all 2.08-4 [16.6 kB] Get:172 http://archive.debian.org/debian/ wheezy/main liburi-perl all 1.60-1 [100 kB] Get:173 http://archive.debian.org/debian/ wheezy/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:174 http://archive.debian.org/debian/ wheezy/main libtimedate-perl all 1.2000-1 [41.2 kB] Get:175 http://archive.debian.org/debian/ wheezy/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:176 http://archive.debian.org/debian/ wheezy/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:177 http://archive.debian.org/debian/ wheezy/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:178 http://archive.debian.org/debian/ wheezy/main libhtml-parser-perl amd64 3.69-2 [114 kB] Get:179 http://archive.debian.org/debian/ wheezy/main libhtml-tree-perl all 5.02-1 [225 kB] Get:180 http://archive.debian.org/debian/ wheezy/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:181 http://archive.debian.org/debian/ wheezy/main libhttp-message-perl all 6.03-1 [78.5 kB] Get:182 http://archive.debian.org/debian/ wheezy/main libhttp-cookies-perl all 6.00-2 [23.5 kB] Get:183 http://archive.debian.org/debian/ wheezy/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:184 http://archive.debian.org/debian/ wheezy/main libnet-ssleay-perl amd64 1.48-1+b1 [335 kB] Get:185 http://archive.debian.org/debian/ wheezy/main libio-socket-ssl-perl all 1.76-2 [68.0 kB] Get:186 http://archive.debian.org/debian/ wheezy/main libnet-http-perl all 6.03-2 [24.3 kB] Get:187 http://archive.debian.org/debian/ wheezy/main liblwp-protocol-https-perl all 6.03-1 [7580 B] Get:188 http://archive.debian.org/debian/ wheezy/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:189 http://archive.debian.org/debian/ wheezy/main libwww-perl all 6.04-1 [203 kB] Get:190 http://archive.debian.org/debian/ wheezy/main libapache2-mod-perl2 amd64 2.0.7-3 [1081 kB] Get:191 http://archive.debian.org/debian/ wheezy/main libdbi-perl amd64 1.622-1+deb7u1 [892 kB] Get:192 http://archive.debian.org/debian/ wheezy/main libapache-dbi-perl all 1.11-1 [54.3 kB] Get:193 http://archive.debian.org/debian/ wheezy/main libapache2-reload-perl all 0.12-1 [17.9 kB] Get:194 http://archive.debian.org/debian/ wheezy/main libparams-util-perl amd64 1.07-1 [25.7 kB] Get:195 http://archive.debian.org/debian/ wheezy/main libsub-install-perl all 0.926-1 [11.2 kB] Get:196 http://archive.debian.org/debian/ wheezy/main libdata-optlist-perl all 0.107-1 [10.7 kB] Get:197 http://archive.debian.org/debian/ wheezy/main libparams-classify-perl amd64 0.013-4 [26.0 kB] Get:198 http://archive.debian.org/debian/ wheezy/main libmodule-runtime-perl all 0.013-1 [17.8 kB] Get:199 http://archive.debian.org/debian/ wheezy/main libtry-tiny-perl all 0.11-1 [18.0 kB] Get:200 http://archive.debian.org/debian/ wheezy/main libmodule-implementation-perl all 0.06-1 [12.8 kB] Get:201 http://archive.debian.org/debian/ wheezy/main liblist-moreutils-perl amd64 0.33-1+b1 [52.5 kB] Get:202 http://archive.debian.org/debian/ wheezy/main libpackage-deprecationmanager-perl all 0.13-1 [13.9 kB] Get:203 http://archive.debian.org/debian/ wheezy/main libpackage-stash-perl all 0.33-1 [19.5 kB] Get:204 http://archive.debian.org/debian/ wheezy/main libclass-load-perl all 0.17-1 [13.0 kB] Get:205 http://archive.debian.org/debian/ wheezy/main libclass-load-xs-perl amd64 0.04-1 [13.3 kB] Get:206 http://archive.debian.org/debian/ wheezy/main libsub-exporter-perl all 0.984-1 [52.4 kB] Get:207 http://archive.debian.org/debian/ wheezy/main libdevel-globaldestruction-perl all 0.06-1 [8432 B] Get:208 http://archive.debian.org/debian/ wheezy/main libeval-closure-perl all 0.08-1 [11.1 kB] Get:209 http://archive.debian.org/debian/ wheezy/main libclass-c3-perl all 0.24-1 [23.8 kB] Get:210 http://archive.debian.org/debian/ wheezy/main libmro-compat-perl all 0.11-1 [12.7 kB] Get:211 http://archive.debian.org/debian/ wheezy/main libpackage-stash-xs-perl amd64 0.24-1+b1 [20.2 kB] Get:212 http://archive.debian.org/debian/ wheezy/main libsub-name-perl amd64 0.05-1+b2 [10.2 kB] Get:213 http://archive.debian.org/debian/ wheezy/main libtask-weaken-perl all 1.03-1 [7690 B] Get:214 http://archive.debian.org/debian/ wheezy/main libmoose-perl amd64 2.0603-1 [882 kB] Get:215 http://archive.debian.org/debian/ wheezy/main libarray-compare-perl all 2.02-1 [14.6 kB] Get:216 http://archive.debian.org/debian/ wheezy/main libvariable-magic-perl amd64 0.50-1 [43.3 kB] Get:217 http://archive.debian.org/debian/ wheezy/main libb-hooks-endofscope-perl all 0.11-1 [7322 B] Get:218 http://archive.debian.org/debian/ wheezy/main libbio-asn1-entrezgene-perl all 1.100-1 [40.6 kB] Get:219 http://archive.debian.org/debian/ wheezy/main libcarp-clan-perl all 6.04-1 [15.8 kB] Get:220 http://archive.debian.org/debian/ wheezy/main libbit-vector-perl amd64 7.2-1 [172 kB] Get:221 http://archive.debian.org/debian/ wheezy/main libbsd-resource-perl amd64 1.2904-1+b2 [31.9 kB] Get:222 http://archive.debian.org/debian/ wheezy/main libclass-c3-xs-perl amd64 0.13-1+b2 [16.1 kB] Get:223 http://archive.debian.org/debian/ wheezy/main libclass-inspector-perl all 1.27-1 [20.6 kB] Get:224 http://archive.debian.org/debian/ wheezy/main libclone-perl amd64 0.31-1+b2 [13.3 kB] Get:225 http://archive.debian.org/debian/ wheezy/main libconvert-binary-c-perl amd64 0.76-1+b2 [314 kB] Get:226 http://archive.debian.org/debian/ wheezy/main libconvert-binhex-perl all 1.119+pristine-3 [30.3 kB] Get:227 http://archive.debian.org/debian/ wheezy/main libcrypt-ssleay-perl amd64 0.58-1 [51.8 kB] Get:228 http://archive.debian.org/debian/ wheezy/main libqhull5 amd64 2009.1-3 [163 kB] Get:229 http://archive.debian.org/debian/ wheezy/main libcsiro0 amd64 5.9.9-5 [58.7 kB] Get:230 http://archive.debian.org/debian/ wheezy/main libdate-calc-perl all 6.3-1 [218 kB] Get:231 http://archive.debian.org/debian/ wheezy/main libdate-calc-xs-perl amd64 6.3-1 [65.1 kB] Get:232 http://archive.debian.org/debian/ wheezy/main libdate-manip-perl all 6.32-1 [2870 kB] Get:233 http://archive.debian.org/debian/ wheezy/main libdbd-mysql-perl amd64 4.021-1+b1 [126 kB] Get:234 http://archive.debian.org/debian/ wheezy/main libdbd-pg-perl amd64 2.19.2-2+deb7u1 [220 kB] Get:235 http://archive.debian.org/debian/ wheezy/main libdbd-sqlite3-perl amd64 1.37-1 [113 kB] Get:236 http://archive.debian.org/debian/ wheezy/main libsub-identify-perl amd64 0.04-1+b2 [9736 B] Get:237 http://archive.debian.org/debian/ wheezy/main libnamespace-clean-perl all 0.23-1 [16.6 kB] Get:238 http://archive.debian.org/debian/ wheezy/main libdevel-partialdump-perl all 0.15-1 [13.3 kB] Get:239 http://archive.debian.org/debian/ wheezy/main libfcgi-perl amd64 0.74-1+b1 [42.8 kB] Get:240 http://archive.debian.org/debian/ wheezy/main libfont-afm-perl all 1.20-1 [14.4 kB] Get:241 http://archive.debian.org/debian/ wheezy/main libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:242 http://archive.debian.org/debian/ wheezy/main libgl1-mesa-dri amd64 8.0.5-4+deb7u2 [21.7 MB] Get:243 http://archive.debian.org/debian/ wheezy/main libglib2.0-data all 2.33.12+really2.32.4-5 [1607 kB] Get:244 http://archive.debian.org/debian/ wheezy/main libheap-perl all 0.80-2 [43.0 kB] Get:245 http://archive.debian.org/debian/ wheezy/main libgraph-perl all 1:0.91-1 [132 kB] Get:246 http://archive.debian.org/debian/ wheezy/main libio-pty-perl amd64 1:1.08-1+b2 [40.0 kB] Get:247 http://archive.debian.org/debian/ wheezy/main libipc-run-perl all 0.92-1 [110 kB] Get:248 http://archive.debian.org/debian/ wheezy/main libxml-parser-perl amd64 2.41-1+b1 [278 kB] Get:249 http://archive.debian.org/debian/ wheezy/main libxml-twig-perl all 1:3.39-1 [189 kB] Get:250 http://archive.debian.org/debian/ wheezy/main libxml-xpath-perl all 1.13-7 [79.6 kB] Get:251 http://archive.debian.org/debian/ wheezy/main libparse-recdescent-perl all 1.967009+dfsg-1 [172 kB] Get:252 http://archive.debian.org/debian/ wheezy/main libgraphviz-perl all 2.10-1 [113 kB] Get:253 http://archive.debian.org/debian/ wheezy/main libgsl0ldbl amd64 1.15+dfsg.2-2 [1132 kB] Get:254 http://archive.debian.org/debian/ wheezy/main libhtml-form-perl all 6.03-1 [23.9 kB] Get:255 http://archive.debian.org/debian/ wheezy/main libhtml-format-perl all 2.10-1 [42.1 kB] Get:256 http://archive.debian.org/debian/ wheezy/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:257 http://archive.debian.org/debian/ wheezy/main libsocket-perl amd64 2.002-1 [40.0 kB] Get:258 http://archive.debian.org/debian/ wheezy/main libio-socket-ip-perl all 0.16-2 [23.6 kB] Get:259 http://archive.debian.org/debian/ wheezy/main libio-stringy-perl all 2.110-5 [98.3 kB] Get:260 http://archive.debian.org/debian/ wheezy/main libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:261 http://archive.debian.org/debian/ wheezy/main libmailtools-perl all 2.09-1 [97.6 kB] Get:262 http://archive.debian.org/debian/ wheezy/main libmath-derivative-perl all 0.01-6 [6214 B] Get:263 http://archive.debian.org/debian/ wheezy/main libmath-spline-perl all 0.01-4 [7680 B] Get:264 http://archive.debian.org/debian/ wheezy/main libmime-tools-perl all 5.503-1 [242 kB] Get:265 http://archive.debian.org/debian/ wheezy/main libmldbm-perl all 2.04-1 [19.1 kB] Get:266 http://archive.debian.org/debian/ wheezy/main libnuma1 amd64 2.0.8~rc4-1 [33.7 kB] Get:267 http://archive.debian.org/debian/ wheezy/main libole-storage-lite-perl all 0.19-1 [26.1 kB] Get:268 http://archive.debian.org/debian/ wheezy/main libopengl-perl amd64 0.66+dfsg-1 [490 kB] Get:269 http://archive.debian.org/debian/ wheezy/main libossp-uuid16 amd64 1.6.2-1.3 [58.8 kB] Get:270 http://archive.debian.org/debian/ wheezy/main libossp-uuid-perl amd64 1.6.2-1.3 [31.6 kB] Get:271 http://archive.debian.org/debian/ wheezy/main libpaper-utils amd64 1.1.24+nmu2 [18.3 kB] Get:272 http://archive.debian.org/debian/ wheezy/main libqsastime0 amd64 5.9.9-5 [40.7 kB] Get:273 http://archive.debian.org/debian/ wheezy/main libplplot11 amd64 5.9.9-5 [505 kB] Get:274 http://archive.debian.org/debian/ wheezy/main libpostscript-perl all 0.06-2 [31.4 kB] Get:275 http://archive.debian.org/debian/ wheezy/main libruby1.9.1 amd64 1.9.3.194-8.1+deb7u5 [4414 kB] Get:276 http://archive.debian.org/debian/ wheezy/main libsasl2-modules amd64 2.1.25.dfsg1-6+deb7u1 [116 kB] Get:277 http://archive.debian.org/debian/ wheezy/main libsoap-lite-perl all 0.714-1 [343 kB] Get:278 http://archive.debian.org/debian/ wheezy/main libsort-naturally-perl all 1.02-1 [14.3 kB] Get:279 http://archive.debian.org/debian/ wheezy/main libspreadsheet-writeexcel-perl all 2.37-1 [741 kB] Get:280 http://archive.debian.org/debian/ wheezy/main libunicode-map-perl amd64 0.112-10+b3 [451 kB] Get:281 http://archive.debian.org/debian/ wheezy/main libspreadsheet-parseexcel-perl all 0.5800-1 [166 kB] Get:282 http://archive.debian.org/debian/ wheezy/main libstatistics-descriptive-perl all 3.0603-1 [42.5 kB] Get:283 http://archive.debian.org/debian/ wheezy/main libsvg-perl all 2.52-1 [85.0 kB] Get:284 http://archive.debian.org/debian/ wheezy/main libtree-dagnode-perl all 1.06-1 [51.8 kB] Get:285 http://archive.debian.org/debian/ wheezy/main libsvg-graph-perl all 0.02-2 [130 kB] Get:286 http://archive.debian.org/debian/ wheezy/main libterm-readkey-perl amd64 2.30-4+b2 [32.2 kB] Get:287 http://archive.debian.org/debian/ wheezy/main libterm-readline-gnu-perl amd64 1.20-2+b1 [110 kB] Get:288 http://archive.debian.org/debian/ wheezy/main libibverbs1 amd64 1.1.6-1 [35.3 kB] Get:289 http://archive.debian.org/debian/ wheezy/main libtorque2 amd64 2.4.16+dfsg-1+deb7u4 [121 kB] Get:290 http://archive.debian.org/debian/ wheezy/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB] Get:291 http://archive.debian.org/debian/ wheezy/main fftw2 amd64 2.1.5-1 [283 kB] Get:292 http://archive.debian.org/debian/ wheezy/main libhdf4-0-alt amd64 4.2r4-13 [307 kB] Get:293 http://archive.debian.org/debian/ wheezy/main proj-data amd64 4.7.0-2 [2937 kB] Get:294 http://archive.debian.org/debian/ wheezy/main libproj0 amd64 4.7.0-2 [138 kB] Get:295 http://archive.debian.org/debian/ wheezy/main pdl amd64 1:2.4.11-4 [5357 kB] Get:296 http://archive.debian.org/debian/ wheezy/main libtfbs-perl amd64 0.5.svn.20100421-1+b1 [197 kB] Get:297 http://archive.debian.org/debian/ wheezy/main libtie-ixhash-perl all 1.21-2 [12.0 kB] Get:298 http://archive.debian.org/debian/ wheezy/main libxml-perl all 0.08-2 [113 kB] Get:299 http://archive.debian.org/debian/ wheezy/main libxml-regexp-perl all 0.04-1 [8370 B] Get:300 http://archive.debian.org/debian/ wheezy/main libxml-dom-perl all 1.44-1 [184 kB] Get:301 http://archive.debian.org/debian/ wheezy/main libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:302 http://archive.debian.org/debian/ wheezy/main libxml-dom-xpath-perl all 0.14-1 [9622 B] Get:303 http://archive.debian.org/debian/ wheezy/main libxml-namespacesupport-perl all 1.09-3 [15.3 kB] Get:304 http://archive.debian.org/debian/ wheezy/main libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:305 http://archive.debian.org/debian/ wheezy/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:306 http://archive.debian.org/debian/ wheezy/main libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:307 http://archive.debian.org/debian/ wheezy/main libxml-libxml-perl amd64 2.0001+dfsg-1+deb7u1 [413 kB] Get:308 http://archive.debian.org/debian/ wheezy/main libxml-libxslt-perl amd64 1.77-1 [54.0 kB] Get:309 http://archive.debian.org/debian/ wheezy/main libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:310 http://archive.debian.org/debian/ wheezy/main libxml-sax-writer-perl all 0.53-1 [24.0 kB] Get:311 http://archive.debian.org/debian/ wheezy/main libxml-simple-perl all 2.20-1 [74.7 kB] Get:312 http://archive.debian.org/debian/ wheezy/main libxml-writer-perl all 0.615-1 [30.3 kB] Get:313 http://archive.debian.org/debian/ wheezy/main libyaml-perl all 0.81-1 [72.4 kB] Get:314 http://archive.debian.org/debian/ wheezy/main maq amd64 0.7.1-5 [321 kB] Get:315 http://archive.debian.org/debian/ wheezy/main muscle amd64 1:3.8.31-1 [169 kB] Get:316 http://archive.debian.org/debian/ wheezy/main perl-doc all 5.14.2-21+deb7u3 [8166 kB] Get:317 http://archive.debian.org/debian/ wheezy/main perl-tk amd64 1:804.030-1 [2524 kB] Get:318 http://archive.debian.org/debian/ wheezy/main phyml amd64 2:20110919-1 [1075 kB] Get:319 http://archive.debian.org/debian/ wheezy/main primer3 amd64 2.2.3-1 [189 kB] Get:320 http://archive.debian.org/debian/ wheezy/main probcons amd64 1.12-9 [196 kB] Get:321 http://archive.debian.org/debian/ wheezy/main psmisc amd64 22.19-1+deb7u1 [135 kB] Get:322 http://archive.debian.org/debian/ wheezy/main ruby1.9.1 amd64 1.9.3.194-8.1+deb7u5 [209 kB] Get:323 http://archive.debian.org/debian/ wheezy/main ruby all 1:1.9.3 [6484 B] Get:324 http://archive.debian.org/debian/ wheezy/main samtools amd64 0.1.18-1 [528 kB] Get:325 http://archive.debian.org/debian/ wheezy/main shared-mime-info amd64 1.0-1+b1 [595 kB] Get:326 http://archive.debian.org/debian/ wheezy/main sim4 amd64 0.0.20030921-3 [54.7 kB] Get:327 http://archive.debian.org/debian/ wheezy/main ssl-cert all 1.0.32+deb7u1 [19.6 kB] Get:328 http://archive.debian.org/debian/ wheezy/main t-coffee amd64 9.02.r1228-2 [848 kB] Get:329 http://archive.debian.org/debian/ wheezy/main tigr-glimmer amd64 3.02-2 [442 kB] Get:330 http://archive.debian.org/debian/ wheezy/main tm-align amd64 20120507-1 [62.9 kB] Get:331 http://archive.debian.org/debian/ wheezy/main xml-core all 0.13+nmu2 [24.2 kB] Get:332 http://archive.debian.org/debian/ wheezy/main bowtie amd64 0.12.7-3 [1285 kB] Get:333 http://archive.debian.org/debian/ wheezy/main libgd-gd2-perl amd64 1:2.46-3+b1 [200 kB] Get:334 http://archive.debian.org/debian/ wheezy/main libset-scalar-perl all 1.25-1 [36.6 kB] Get:335 http://archive.debian.org/debian/ wheezy/main lynx-cur amd64 2.8.8dev.12-2 [2249 kB] Get:336 http://archive.debian.org/debian/ wheezy/main lynx all 2.8.8dev.12-2 [223 kB] Get:337 http://archive.debian.org/debian/ wheezy/main ttf-liberation all 1.07.2-6 [9284 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 203 MB in 1min 41s (1995 kB/s) Selecting previously unselected package iproute. (Reading database ... 6657 files and directories currently installed.) Unpacking iproute (from .../iproute_20120521-3+b3_amd64.deb) ... Selecting previously unselected package ifupdown. Unpacking ifupdown (from .../ifupdown_0.7.8_amd64.deb) ... Selecting previously unselected package libgdbm3:amd64. Unpacking libgdbm3:amd64 (from .../libgdbm3_1.8.3-11_amd64.deb) ... Selecting previously unselected package libncursesw5:amd64. Unpacking libncursesw5:amd64 (from .../libncursesw5_5.9-10_amd64.deb) ... Selecting previously unselected package libprocps0:amd64. Unpacking libprocps0:amd64 (from .../libprocps0_1%3a3.3.3-3_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package libcap2:amd64. Unpacking libcap2:amd64 (from .../libcap2_1%3a2.22-1.2_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. 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Selecting previously unselected package libclass-load-perl. Unpacking libclass-load-perl (from .../libclass-load-perl_0.17-1_all.deb) ... Selecting previously unselected package libclass-load-xs-perl. Unpacking libclass-load-xs-perl (from .../libclass-load-xs-perl_0.04-1_amd64.deb) ... Selecting previously unselected package libsub-exporter-perl. Unpacking libsub-exporter-perl (from .../libsub-exporter-perl_0.984-1_all.deb) ... Selecting previously unselected package libdevel-globaldestruction-perl. Unpacking libdevel-globaldestruction-perl (from .../libdevel-globaldestruction-perl_0.06-1_all.deb) ... Selecting previously unselected package libeval-closure-perl. Unpacking libeval-closure-perl (from .../libeval-closure-perl_0.08-1_all.deb) ... Selecting previously unselected package libclass-c3-perl. Unpacking libclass-c3-perl (from .../libclass-c3-perl_0.24-1_all.deb) ... Selecting previously unselected package libmro-compat-perl. 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Selecting previously unselected package libb-hooks-endofscope-perl. Unpacking libb-hooks-endofscope-perl (from .../libb-hooks-endofscope-perl_0.11-1_all.deb) ... Selecting previously unselected package libbio-asn1-entrezgene-perl. Unpacking libbio-asn1-entrezgene-perl (from .../libbio-asn1-entrezgene-perl_1.100-1_all.deb) ... Selecting previously unselected package libcarp-clan-perl. Unpacking libcarp-clan-perl (from .../libcarp-clan-perl_6.04-1_all.deb) ... Selecting previously unselected package libbit-vector-perl. Unpacking libbit-vector-perl (from .../libbit-vector-perl_7.2-1_amd64.deb) ... Selecting previously unselected package libbsd-resource-perl. Unpacking libbsd-resource-perl (from .../libbsd-resource-perl_1.2904-1+b2_amd64.deb) ... Selecting previously unselected package libclass-c3-xs-perl. Unpacking libclass-c3-xs-perl (from .../libclass-c3-xs-perl_0.13-1+b2_amd64.deb) ... Selecting previously unselected package libclass-inspector-perl. Unpacking libclass-inspector-perl (from .../libclass-inspector-perl_1.27-1_all.deb) ... Selecting previously unselected package libclone-perl. Unpacking libclone-perl (from .../libclone-perl_0.31-1+b2_amd64.deb) ... Selecting previously unselected package libconvert-binary-c-perl. Unpacking libconvert-binary-c-perl (from .../libconvert-binary-c-perl_0.76-1+b2_amd64.deb) ... Selecting previously unselected package libconvert-binhex-perl. Unpacking libconvert-binhex-perl (from .../libconvert-binhex-perl_1.119+pristine-3_all.deb) ... Selecting previously unselected package libcrypt-ssleay-perl. Unpacking libcrypt-ssleay-perl (from .../libcrypt-ssleay-perl_0.58-1_amd64.deb) ... Selecting previously unselected package libqhull5. Unpacking libqhull5 (from .../libqhull5_2009.1-3_amd64.deb) ... Selecting previously unselected package libcsiro0. Unpacking libcsiro0 (from .../libcsiro0_5.9.9-5_amd64.deb) ... Selecting previously unselected package libdate-calc-perl. 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Selecting previously unselected package libplplot11. Unpacking libplplot11 (from .../libplplot11_5.9.9-5_amd64.deb) ... Selecting previously unselected package libpostscript-perl. Unpacking libpostscript-perl (from .../libpostscript-perl_0.06-2_all.deb) ... Selecting previously unselected package libruby1.9.1. Unpacking libruby1.9.1 (from .../libruby1.9.1_1.9.3.194-8.1+deb7u5_amd64.deb) ... Selecting previously unselected package libsasl2-modules:amd64. Unpacking libsasl2-modules:amd64 (from .../libsasl2-modules_2.1.25.dfsg1-6+deb7u1_amd64.deb) ... Selecting previously unselected package libsoap-lite-perl. Unpacking libsoap-lite-perl (from .../libsoap-lite-perl_0.714-1_all.deb) ... Selecting previously unselected package libsort-naturally-perl. Unpacking libsort-naturally-perl (from .../libsort-naturally-perl_1.02-1_all.deb) ... Selecting previously unselected package libspreadsheet-writeexcel-perl. 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Selecting previously unselected package libterm-readkey-perl. Unpacking libterm-readkey-perl (from .../libterm-readkey-perl_2.30-4+b2_amd64.deb) ... Selecting previously unselected package libterm-readline-gnu-perl. Unpacking libterm-readline-gnu-perl (from .../libterm-readline-gnu-perl_1.20-2+b1_amd64.deb) ... Selecting previously unselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.6-1_amd64.deb) ... Selecting previously unselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1+deb7u4_amd64.deb) ... Selecting previously unselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.5-1_amd64.deb) ... Selecting previously unselected package fftw2. Unpacking fftw2 (from .../fftw2_2.1.5-1_amd64.deb) ... Selecting previously unselected package libhdf4-0-alt. Unpacking libhdf4-0-alt (from .../libhdf4-0-alt_4.2r4-13_amd64.deb) ... Selecting previously unselected package proj-data. 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Unpacking maq (from .../archives/maq_0.7.1-5_amd64.deb) ... Selecting previously unselected package muscle. Unpacking muscle (from .../muscle_1%3a3.8.31-1_amd64.deb) ... Selecting previously unselected package perl-doc. Unpacking perl-doc (from .../perl-doc_5.14.2-21+deb7u3_all.deb) ... Adding 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Selecting previously unselected package perl-tk. Unpacking perl-tk (from .../perl-tk_1%3a804.030-1_amd64.deb) ... Selecting previously unselected package phyml. Unpacking phyml (from .../phyml_2%3a20110919-1_amd64.deb) ... Selecting previously unselected package primer3. Unpacking primer3 (from .../primer3_2.2.3-1_amd64.deb) ... Selecting previously unselected package probcons. Unpacking probcons (from .../probcons_1.12-9_amd64.deb) ... Selecting previously unselected package psmisc. Unpacking psmisc (from .../psmisc_22.19-1+deb7u1_amd64.deb) ... Selecting previously unselected package ruby1.9.1. 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Selecting previously unselected package xml-core. Unpacking xml-core (from .../xml-core_0.13+nmu2_all.deb) ... Selecting previously unselected package bowtie. Unpacking bowtie (from .../bowtie_0.12.7-3_amd64.deb) ... Selecting previously unselected package libgd-gd2-perl. Unpacking libgd-gd2-perl (from .../libgd-gd2-perl_1%3a2.46-3+b1_amd64.deb) ... Selecting previously unselected package libset-scalar-perl. Unpacking libset-scalar-perl (from .../libset-scalar-perl_1.25-1_all.deb) ... Selecting previously unselected package lynx-cur. Unpacking lynx-cur (from .../lynx-cur_2.8.8dev.12-2_amd64.deb) ... Selecting previously unselected package lynx. Unpacking lynx (from .../lynx_2.8.8dev.12-2_all.deb) ... Selecting previously unselected package ttf-liberation. Unpacking ttf-liberation (from .../ttf-liberation_1.07.2-6_all.deb) ... Setting up iproute (20120521-3+b3) ... Setting up ifupdown (0.7.8) ... Creating /etc/network/interfaces. Setting up libgdbm3:amd64 (1.8.3-11) ... Setting up libncursesw5:amd64 (5.9-10) ... Setting up libprocps0:amd64 (1:3.3.3-3) ... Setting up libssl1.0.0:amd64 (1.0.1e-2+deb7u20) ... Setting up libcap2:amd64 (1:2.22-1.2) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2+deb7u2) ... Setting up libgnutls26:amd64 (2.12.20-8+deb7u5) ... Setting up libgpm2:amd64 (1.20.4-6) ... Setting up libkeyutils1:amd64 (1.5.5-3+deb7u1) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libidn11:amd64 (1.25-2) ... Setting up libsasl2-2:amd64 (2.1.25.dfsg1-6+deb7u1) ... Setting up libldap-2.4-2:amd64 (2.4.31-2+deb7u2) ... Setting up libmagic1:amd64 (5.11-2+deb7u8) ... Setting up libpcre3:amd64 (1:8.30-5) ... Setting up libsqlite3-0:amd64 (3.7.13-1+deb7u2) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7+wheezy5) ... Setting up bedtools (2.16.1-1) ... Setting up libdrm2:amd64 (2.4.40-1~deb7u2) ... Setting up libglapi-mesa:amd64 (8.0.5-4+deb7u2) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u2) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u2) ... Setting up libx11-xcb1:amd64 (2:1.5.0-1+deb7u2) ... Setting up libxcb-glx0:amd64 (1.8.1-2+deb7u1) ... Setting up libxfixes3:amd64 (1:5.0-4+deb7u1) ... Setting up libxdamage1:amd64 (1:1.1.3-2) ... Setting up libxext6:amd64 (2:1.3.1-2+deb7u1) ... Setting up libxxf86vm1:amd64 (1:1.1.2-1+deb7u1) ... Setting up libgl1-mesa-glx:amd64 (8.0.5-4+deb7u2) ... Setting up libxi6:amd64 (2:1.6.1-1+deb7u1) ... Setting up freeglut3:amd64 (2.6.0-4) ... Setting up libatm1:amd64 (1:2.5.1-1.5) ... Setting up libavahi-common-data:amd64 (0.6.31-2) ... Setting up libavahi-common3:amd64 (0.6.31-2) ... Setting up libdbus-1-3:amd64 (1.6.8-1+deb7u6) ... Setting up libavahi-client3:amd64 (0.6.31-2) ... Setting up libbsd0:amd64 (0.4.2-1) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u2) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u3) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1) ... Setting up libpixman-1-0:amd64 (0.26.0-4+deb7u2) ... Setting up libpng12-0:amd64 (1.2.49-1+deb7u2) ... Setting up libxcb-render0:amd64 (1.8.1-2+deb7u1) ... Setting up libxcb-shm0:amd64 (1.8.1-2+deb7u1) ... Setting up libxrender1:amd64 (1:0.9.7-1+deb7u2) ... Setting up libcairo2:amd64 (1.12.2-3) ... Setting up libcups2:amd64 (1.5.3-5+deb7u6) ... Setting up libjpeg8:amd64 (8d-1+deb7u1) ... Setting up libjbig0:amd64 (2.0-2+deb7u1) ... Setting up libtiff4:amd64 (3.9.6-11) ... Setting up libcupsimage2:amd64 (1.5.3-5+deb7u6) ... Setting up libdatrie1:amd64 (0.2.5-3) ... Setting up libpciaccess0:amd64 (0.13.1-2) ... Setting up libdrm-intel1:amd64 (2.4.40-1~deb7u2) ... Setting up libdrm-nouveau1a:amd64 (2.4.40-1~deb7u2) ... Setting up libdrm-radeon1:amd64 (2.4.40-1~deb7u2) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libxpm4:amd64 (1:3.5.10-1) ... Setting up libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Setting up libquadmath0:amd64 (4.7.2-5) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up libglib2.0-0:amd64 (2.33.12+really2.32.4-5) ... No schema files found: doing nothing. Setting up libglu1-mesa:amd64 (8.0.5-4+deb7u2) ... Setting up x11-common (1:7.7+3~deb7u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up libjasper1:amd64 (1.900.1-13+deb7u4) ... Setting up liblcms2-2:amd64 (2.2+git20110628-2.2+deb7u1) ... Setting up libltdl7:amd64 (2.4.2-1.1) ... Setting up mysql-common (5.5.47-0+deb7u1) ... Setting up libmysqlclient18:amd64 (5.5.47-0+deb7u1) ... Setting up ncbi-data (6.1.20120620-2) ... Setting up libncbi6:amd64 (6.1.20120620-2) ... Setting up libthai-data (0.1.18-2) ... Setting up libthai0:amd64 (0.1.18-2) ... Setting up libxft2:amd64 (2.3.1-1) ... Setting up fontconfig (2.9.0-7.1) ... Regenerating fonts cache... done. Setting up libpango1.0-0:amd64 (1.30.0-1) ... Setting up libpaper1:amd64 (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libxt6:amd64 (1:1.1.3-1+deb7u1) ... Setting up libxmu6:amd64 (2:1.1.1-1) ... Setting up libxaw7:amd64 (2:1.0.10-2) ... Setting up libxslt1.1:amd64 (1.1.26-14.1) ... Setting up libyaml-0-2:amd64 (0.1.4-2+deb7u5) ... Setting up libclass-isa-perl (0.36-3) ... Setting up mafft (6.864-1) ... Setting up poppler-data (0.4.5-10) ... Setting up wise (2.4.1-10) ... Setting up libsystemd-login0:amd64 (44-11+deb7u4) ... Setting up adduser (3.113+nmu3) ... Setting up netbase (5.0) ... Setting up procps (1:3.3.3-3) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode invoke-rc.d: policy-rc.d denied execution of start. Setting up file (5.11-2+deb7u8) ... Setting up krb5-locales (1.10.1+dfsg-5+deb7u7) ... Setting up mime-support (3.52-1+deb7u1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up amap-align (2.2-3) ... Setting up libapr1 (1.4.6-3+deb7u1) ... Setting up libaprutil1 (1.4.1-3) ... Setting up libaprutil1-dbd-sqlite3 (1.4.1-3) ... Setting up libaprutil1-ldap (1.4.1-3) ... Setting up apache2.2-bin (2.2.22-13+deb7u6) ... Setting up apache2-utils (2.2.22-13+deb7u6) ... Setting up blast2 (1:2.2.26.20120620-2) ... Setting up bwa (0.6.2-1) ... Setting up openssl (1.0.1e-2+deb7u20) ... Setting up ca-certificates (20130119+deb7u1) ... Setting up clustalw (2.1+lgpl-2) ... Setting up dbus (1.6.8-1+deb7u6) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up dialign (2.2.1-5) ... Setting up libhpdf-2.2.1 (2.2.1-1) ... Setting up libpq5 (9.1.21-0+deb7u1) ... Setting up emboss-lib (6.4.0-2) ... Setting up emboss-data (6.4.0-2) ... Setting up emboss (6.4.0-2) ... Setting up exonerate (2.2.0-6) ... Setting up fonts-droid (20111207+git-1) ... Setting up fonts-liberation (1.07.2-6) ... Setting up libijs-0.35 (0.35-8) ... Setting up libjbig2dec0 (0.11+20120125-1) ... Setting up libgs9-common (9.05~dfsg-6.3+deb7u2) ... Setting up libgs9 (9.05~dfsg-6.3+deb7u2) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Setting up ghostscript (9.05~dfsg-6.3+deb7u2) ... Setting up libcdt4 (2.26.3-14+deb7u2) ... Setting up libcgraph5 (2.26.3-14+deb7u2) ... Setting up libgraph4 (2.26.3-14+deb7u2) ... Setting up libpathplan4 (2.26.3-14+deb7u2) ... Setting up libxdot4 (2.26.3-14+deb7u2) ... Setting up libgvc5 (2.26.3-14+deb7u2) ... Setting up libgvpr1 (2.26.3-14+deb7u2) ... Setting up graphviz (2.26.3-14+deb7u2) ... Setting up hmmer (3.0-4) ... Setting up infernal (1.0.2-2) ... Setting up kalign (1:2.03+20110620-2) ... Setting up libperl5.14 (5.14.2-21+deb7u3) ... Setting up libqhull5 (2009.1-3) ... Setting up libcsiro0 (5.9.9-5) ... Setting up libgl1-mesa-dri:amd64 (8.0.5-4+deb7u2) ... Setting up libglib2.0-data (2.33.12+really2.32.4-5) ... Setting up libgsl0ldbl (1.15+dfsg.2-2) ... Setting up libnuma1 (2.0.8~rc4-1) ... Setting up libossp-uuid16 (1.6.2-1.3) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up libqsastime0 (5.9.9-5) ... Setting up libplplot11 (5.9.9-5) ... Setting up libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Setting up libsasl2-modules:amd64 (2.1.25.dfsg1-6+deb7u1) ... Setting up libibverbs1 (1.1.6-1) ... Setting up libtorque2 (2.4.16+dfsg-1+deb7u4) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up fftw2 (2.1.5-1) ... Setting up libhdf4-0-alt (4.2r4-13) ... Setting up proj-data (4.7.0-2) ... Setting up libproj0 (4.7.0-2) ... Setting up maq (0.7.1-5) ... Setting up muscle (1:3.8.31-1) ... Setting up phyml (2:20110919-1) ... Setting up primer3 (2.2.3-1) ... Setting up probcons (1.12-9) ... Setting up psmisc (22.19-1+deb7u1) ... Setting up ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... update-alternatives: using /usr/bin/gem1.9.1 to provide /usr/bin/gem (gem) in auto mode update-alternatives: using /usr/bin/ruby1.9.1 to provide /usr/bin/ruby (ruby) in auto mode Setting up ruby (1:1.9.3) ... Setting up samtools (0.1.18-1) ... Setting up shared-mime-info (1.0-1+b1) ... Setting up sim4 (0.0.20030921-3) ... Setting up ssl-cert (1.0.32+deb7u1) ... Setting up t-coffee (9.02.r1228-2) ... Setting up tigr-glimmer (3.02-2) ... Setting up tm-align (20120507-1) ... Setting up bowtie (0.12.7-3) ... Setting up lynx-cur (2.8.8dev.12-2) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx (2.8.8dev.12-2) ... Setting up ttf-liberation (1.07.2-6) ... Setting up libswitch-perl (2.16-2) ... Setting up perl-modules (5.14.2-21+deb7u3) ... Setting up perl (5.14.2-21+deb7u3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libyaml-syck-perl (1.20-1) ... Setting up sgml-base (1.26+nmu4) ... Setting up apache2.2-common (2.2.22-13+deb7u6) ... Enabling site default. Enabling module alias. Enabling module autoindex. Enabling module dir. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module status. Enabling module auth_basic. Enabling module deflate. Enabling module authz_default. Enabling module authz_user. Enabling module authz_groupfile. Enabling module authn_file. Enabling module authz_host. Enabling module reqtimeout. Setting up apache2-mpm-worker (2.2.22-13+deb7u6) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up apache2 (2.2.22-13+deb7u6) ... Setting up libio-string-perl (1.08-2) ... Setting up libdata-stag-perl (0.11-2) ... Setting up libbio-perl-perl (1.6.901-3) ... Setting up bioperl (1.6.901-3) ... Setting up libbio-perl-run-perl (1.6.9-1) ... Setting up bioperl-run (1.6.9-1) ... Setting up liberror-perl (0.17-1) ... Setting up libipc-sharelite-perl (0.17-2) ... Setting up libcache-cache-perl (1.06-2) ... Setting up libace-perl (1.92-2+b2) ... Setting up libalgorithm-c3-perl (0.08-1) ... Setting up libalgorithm-diff-perl (1.19.02-2) ... Setting up libalgorithm-diff-xs-perl (0.04-2+b1) ... Setting up libalgorithm-munkres-perl (0.08-2) ... Setting up libdevel-symdump-perl (2.08-4) ... Setting up liburi-perl (1.60-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libtimedate-perl (1.2000-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-2) ... Setting up libhtml-tree-perl (5.02-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.03-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.48-1+b1) ... Setting up libio-socket-ssl-perl (1.76-2) ... Setting up libnet-http-perl (6.03-2) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libwww-perl (6.04-1) ... Setting up libapache2-mod-perl2 (2.0.7-3) ... Enabling module perl. To activate the new configuration, you need to run: service apache2 restart Setting up libdbi-perl (1.622-1+deb7u1) ... Setting up libapache-dbi-perl (1.11-1) ... Setting up libapache2-reload-perl (0.12-1) ... Setting up libparams-util-perl (1.07-1) ... Setting up libsub-install-perl (0.926-1) ... Setting up libdata-optlist-perl (0.107-1) ... Setting up libparams-classify-perl (0.013-4) ... Setting up libmodule-runtime-perl (0.013-1) ... Setting up libtry-tiny-perl (0.11-1) ... Setting up libmodule-implementation-perl (0.06-1) ... Setting up liblist-moreutils-perl (0.33-1+b1) ... Setting up libpackage-deprecationmanager-perl (0.13-1) ... Setting up libpackage-stash-perl (0.33-1) ... Setting up libclass-load-perl (0.17-1) ... Setting up libclass-load-xs-perl (0.04-1) ... Setting up libsub-exporter-perl (0.984-1) ... Setting up libdevel-globaldestruction-perl (0.06-1) ... Setting up libeval-closure-perl (0.08-1) ... Setting up libclass-c3-perl (0.24-1) ... Setting up libmro-compat-perl (0.11-1) ... Setting up libpackage-stash-xs-perl (0.24-1+b1) ... Setting up libsub-name-perl (0.05-1+b2) ... Setting up libtask-weaken-perl (1.03-1) ... Setting up libmoose-perl (2.0603-1) ... Setting up libarray-compare-perl (2.02-1) ... Setting up libvariable-magic-perl (0.50-1) ... Setting up libb-hooks-endofscope-perl (0.11-1) ... Setting up libbio-asn1-entrezgene-perl (1.100-1) ... Setting up libcarp-clan-perl (6.04-1) ... Setting up libbit-vector-perl (7.2-1) ... Setting up libbsd-resource-perl (1.2904-1+b2) ... Setting up libclass-c3-xs-perl (0.13-1+b2) ... Setting up libclass-inspector-perl (1.27-1) ... Setting up libclone-perl (0.31-1+b2) ... Setting up libconvert-binary-c-perl (0.76-1+b2) ... Setting up libconvert-binhex-perl (1.119+pristine-3) ... Setting up libcrypt-ssleay-perl (0.58-1) ... Setting up libdate-calc-perl (6.3-1) ... Setting up libdate-calc-xs-perl (6.3-1) ... Setting up libdate-manip-perl (6.32-1) ... Setting up libdbd-mysql-perl (4.021-1+b1) ... Setting up libdbd-pg-perl (2.19.2-2+deb7u1) ... Setting up libdbd-sqlite3-perl (1.37-1) ... Setting up libsub-identify-perl (0.04-1+b2) ... Setting up libnamespace-clean-perl (0.23-1) ... Setting up libdevel-partialdump-perl (0.15-1) ... Setting up libfcgi-perl (0.74-1+b1) ... Setting up libfont-afm-perl (1.20-1) ... Setting up libfreezethaw-perl (0.5001-1) ... Setting up libheap-perl (0.80-2) ... Setting up libgraph-perl (1:0.91-1) ... Setting up libio-pty-perl (1:1.08-1+b2) ... Setting up libipc-run-perl (0.92-1) ... Setting up libxml-parser-perl (2.41-1+b1) ... Setting up libxml-twig-perl (1:3.39-1) ... Setting up libxml-xpath-perl (1.13-7) ... Setting up libparse-recdescent-perl (1.967009+dfsg-1) ... Setting up libgraphviz-perl (2.10-1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libhtml-format-perl (2.10-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libsocket-perl (2.002-1) ... Setting up libio-socket-ip-perl (0.16-2) ... Setting up libio-stringy-perl (2.110-5) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up libmailtools-perl (2.09-1) ... Setting up libmath-derivative-perl (0.01-6) ... Setting up libmath-spline-perl (0.01-4) ... Setting up libmime-tools-perl (5.503-1) ... Setting up libmldbm-perl (2.04-1) ... Setting up libole-storage-lite-perl (0.19-1) ... Setting up libopengl-perl (0.66+dfsg-1) ... Setting up libossp-uuid-perl (1.6.2-1.3) ... Setting up libpostscript-perl (0.06-2) ... Setting up libsoap-lite-perl (0.714-1) ... Setting up libsort-naturally-perl (1.02-1) ... Setting up libspreadsheet-writeexcel-perl (2.37-1) ... Setting up libunicode-map-perl (0.112-10+b3) ... Setting up libspreadsheet-parseexcel-perl (0.5800-1) ... Setting up libstatistics-descriptive-perl (3.0603-1) ... Setting up libsvg-perl (2.52-1) ... Setting up libtree-dagnode-perl (1.06-1) ... Setting up libsvg-graph-perl (0.02-2) ... Setting up libterm-readkey-perl (2.30-4+b2) ... Setting up libterm-readline-gnu-perl (1.20-2+b1) ... Setting up pdl (1:2.4.11-4) ... Setting up libtfbs-perl (0.5.svn.20100421-1+b1) ... Setting up libtie-ixhash-perl (1.21-2) ... Setting up libxml-perl (0.08-2) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up libxml-dom-perl (1.44-1) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up libxml-dom-xpath-perl (0.14-1) ... Setting up libxml-namespacesupport-perl (1.09-3) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-filter-buffertext-perl (1.01-5) ... Setting up libxml-libxml-perl (2.0001+dfsg-1+deb7u1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxslt-perl (1.77-1) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-sax-writer-perl (0.53-1) ... Setting up libxml-simple-perl (2.20-1) ... Setting up libxml-writer-perl (0.615-1) ... Setting up libyaml-perl (0.81-1) ... Setting up perl-doc (5.14.2-21+deb7u3) ... Setting up perl-tk (1:804.030-1) ... Setting up xml-core (0.13+nmu2) ... Setting up libgd-gd2-perl (1:2.46-3+b1) ... Setting up libset-scalar-perl (1.25-1) ... Setting up liblwp-protocol-https-perl (6.03-1) ... Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 171 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for sgml-base ... 2m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', '-y', 'install', 'libtfbs-perl'] 2m39.5s INFO: Running scripts post_install 2m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_install_exceptions'] 2m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_install_exceptions'] 2m39.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 2m41.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 2m41.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpxPPtK8 to jessie 2m41.3s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ jessie main 2m41.3s INFO: Running scripts pre_distupgrade 2m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m41.3s DUMP: removed `/etc/apt/apt.conf.d/unauthenticated-wheezy' 2m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_distupgrade_exceptions'] 2m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_distupgrade_exceptions'] 2m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', 'update'] 2m46.6s DUMP: Get:1 http://mirror-ubc.debian.org jessie Release.gpg [2420 B] Get:2 http://mirror-ubc.debian.org jessie Release [148 kB] Get:3 http://mirror-ubc.debian.org jessie/main amd64 Packages [6818 kB] Get:4 http://mirror-ubc.debian.org jessie/main Translation-en [4581 kB] Fetched 11.5 MB in 3s (3449 kB/s) Reading package lists... 2m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', 'update'] 2m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', '-yf', 'dist-upgrade'] 4m32.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gcc-4.7-base libgd-gd2-perl libgvc5 libopenmpi1.3 libperl5.14 The following NEW packages will be installed: acl apache2-bin apache2-data clustalo dialign-tx dialign-tx-data dmsetup fonts-dejavu-core gcc-4.9-base init iproute2 isc-dhcp-client isc-dhcp-common javascript-common libarchive-extract-perl libargtable2-0 libaudit-common libaudit1 libauthen-sasl-perl libb-hooks-op-check-perl libbareword-filehandles-perl libcap-ng0 libcap2-bin libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-method-modifiers-perl libclass-tiny-perl libclass-xsaccessor-perl libcpan-meta-perl libcr0 libcrypt-rc4-perl libcryptsetup4 libcupsfilters1 libdata-section-perl libdb5.3 libdebconfclient0 libdevel-caller-perl libdevel-lexalias-perl libdevel-stacktrace-perl libdevmapper1.02.1 libdigest-perl-md5-perl libdist-checkconflicts-perl libdns-export100 libdrm-nouveau2 libedit2 libelf1 libexporter-tiny-perl libffi6 libfile-slurp-tiny-perl libgcrypt20 libgd-perl libgd3 libgmp10 libgnutls-deb0-28 libgomp1 libgraphite2-3 libgvc6 libgvpr2 libharfbuzz0b libhogweed2 libhtml-tableextract-perl libhwloc-plugins libhwloc5 libimport-into-perl libindirect-perl libio-html-perl libio-sessiondata-perl libirs-export91 libisc-export95 libisccfg-export90 libjpeg62-turbo libjs-jquery libkmod2 liblexical-sealrequirehints-perl libllvm3.5 liblog-message-perl liblog-message-simple-perl liblua5.1-0 libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-conflicts-perl libmodule-signature-perl libmoo-perl libmultidimensional-perl libnet-smtp-ssl-perl libnettle4 libopenmpi1.6 libpackage-constants-perl libpadwalker-perl libpam-cap libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangox-1.0-0 libpangoxft-1.0-0 libperl5.20 libpod-latex-perl libpod-readme-perl libprocps3 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libqhull6 libregexp-common-perl librole-tiny-perl libruby2.1 libsasl2-modules-db libsmartcols1 libsoftware-license-perl libstrictures-perl libsub-exporter-progressive-perl libsystemd0 libtasn1-6 libterm-ui-perl libtext-soundex-perl libtext-template-perl libtiff5 libtxc-dxtn-s2tc0 libtype-tiny-perl libtype-tiny-xs-perl libudev1 libvpx1 libxcb-dri2-0 libxcb-dri3-0 libxcb-present0 libxcb-sync1 libxmlrpc-lite-perl libxshmfence1 libxtables10 mustang ncbi-blast+ ocl-icd-libopencl1 poa prank probalign proda python python-minimal python2.7 python2.7-minimal rename ruby2.1 rubygems-integration startpar systemd systemd-sysv udev wise-data xdg-user-dirs The following packages will be upgraded: amap-align apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common apt base-files base-passwd bash bedtools bioperl bioperl-run blast2 bowtie bsdutils bwa ca-certificates clustalw coreutils dash dbus debconf debconf-i18n debian-archive-keyring debianutils dialign diffutils dpkg e2fslibs e2fsprogs emboss emboss-data emboss-lib fftw2 file findutils fontconfig fontconfig-config fonts-droid fonts-liberation freeglut3 ghostscript gnupg gpgv graphviz grep gzip hmmer hostname ifupdown infernal initscripts iproute krb5-locales libace-perl libacl1 libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libapt-pkg4.12 libarray-compare-perl libattr1 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libblkid1 libbsd-resource-perl libbsd0 libbz2-1.0 libc-bin libc6 libcache-cache-perl libcairo2 libcap2 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcomerr2 libconvert-binary-c-perl libconvert-binhex-perl libcrypt-ssleay-perl libcsiro0 libcups2 libcupsimage2 libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-globaldestruction-perl libdevel-partialdump-perl libdevel-symdump-perl libdrm-intel1 libdrm-radeon1 libdrm2 liberror-perl libeval-closure-perl libexpat1 libfcgi-perl libfontconfig1 libfreetype6 libgcc1 libgdbm3 libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libglu1-mesa libgpg-error0 libgpm2 libgraph-perl libgraphviz-perl libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libhdf4-0-alt libhpdf-2.2.1 libhtml-format-perl libhtml-parser-perl libhtml-tree-perl libhttp-cookies-perl libhttp-message-perl libibverbs1 libice6 libidn11 libijs-0.35 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libipc-run-perl libipc-sharelite-perl libjasper1 libjbig0 libjbig2dec0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblist-moreutils-perl liblocale-gettext-perl libltdl7 liblwp-protocol-https-perl liblzma5 libmagic1 libmailtools-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoose-perl libmount1 libmro-compat-perl libmysqlclient18 libnamespace-clean-perl libncbi6 libncurses5 libncursesw5 libnet-http-perl libnet-ssleay-perl libnuma1 libopengl-perl libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-stash-perl libpackage-stash-xs-perl libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpathplan4 libpciaccess0 libpcre3 libpixman-1-0 libpng12-0 libpq5 libproj0 libqsastime0 libquadmath0 libreadline6 libsasl2-2 libsasl2-modules libselinux1 libsemanage-common libsemanage1 libsepol1 libset-scalar-perl libslang2 libsm6 libsoap-lite-perl libsocket-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libss2 libssl1.0.0 libstatistics-descriptive-perl libstdc++6 libsub-exporter-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-perl libswitch-perl libsystemd-login0 libtask-weaken-perl libterm-readkey-perl libterm-readline-gnu-perl libtext-charwidth-perl libtext-iconv-perl libtfbs-perl libthai-data libthai0 libtie-ixhash-perl libtimedate-perl libtinfo5 libtree-dagnode-perl libtry-tiny-perl libunicode-map-perl liburi-perl libusb-0.1-4 libustr-1.0-1 libuuid1 libvariable-magic-perl libwww-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-glx0 libxcb-render0 libxcb-shm0 libxcb1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxi6 libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-writer-perl libxml-twig-perl libxml-writer-perl libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libxxf86vm1 libyaml-0-2 libyaml-perl libyaml-syck-perl login lsb-base lynx lynx-cur mafft mime-support mount multiarch-support mysql-common ncbi-data ncurses-base ncurses-bin netbase openssl passwd pdl perl perl-base perl-doc perl-modules perl-tk phyml poppler-data primer3 procps proj-data psmisc readline-common ruby samtools sed sensible-utils shared-mime-info sim4 ssl-cert sysv-rc sysvinit sysvinit-utils t-coffee tar tigr-glimmer tm-align ttf-dejavu-core ttf-liberation tzdata ucf util-linux wise x11-common xz-utils zlib1g 345 upgraded, 152 newly installed, 5 to remove and 0 not upgraded. Need to get 237 MB of archives. After this operation, 283 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ jessie/main libc6 amd64 2.19-18+deb8u10 [4665 kB] Get:2 http://mirror-ubc.debian.org/debian/ jessie/main libc-bin amd64 2.19-18+deb8u10 [1281 kB] Get:3 http://mirror-ubc.debian.org/debian/ jessie/main gcc-4.9-base amd64 4.9.2-10+deb8u1 [160 kB] Get:4 http://mirror-ubc.debian.org/debian/ jessie/main libstdc++6 amd64 4.9.2-10+deb8u1 [273 kB] Get:5 http://mirror-ubc.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:6 http://mirror-ubc.debian.org/debian/ jessie/main libgcc1 amd64 1:4.9.2-10+deb8u1 [39.5 kB] Get:7 http://mirror-ubc.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:8 http://mirror-ubc.debian.org/debian/ jessie/main libcdt5 amd64 2.38.0-7 [62.7 kB] Get:9 http://mirror-ubc.debian.org/debian/ jessie/main libcgraph6 amd64 2.38.0-7 [85.2 kB] Get:10 http://mirror-ubc.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:11 http://mirror-ubc.debian.org/debian/ jessie/main zlib1g amd64 1:1.2.8.dfsg-2+b1 [88.8 kB] Get:12 http://mirror-ubc.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:13 http://mirror-ubc.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:14 http://mirror-ubc.debian.org/debian/ jessie/main libpcre3 amd64 2:8.35-3.3+deb8u4 [322 kB] Get:15 http://mirror-ubc.debian.org/debian/ jessie/main libselinux1 amd64 2.3-2 [89.8 kB] Get:16 http://mirror-ubc.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:17 http://mirror-ubc.debian.org/debian/ jessie/main dpkg amd64 1.17.27 [2994 kB] Get:18 http://mirror-ubc.debian.org/debian/ jessie/main libdb5.3 amd64 5.3.28-9+deb8u1 [680 kB] Get:19 http://mirror-ubc.debian.org/debian/ jessie/main iproute all 1:3.16.0-2 [15.5 kB] Get:20 http://mirror-ubc.debian.org/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB] Get:21 http://mirror-ubc.debian.org/debian/ jessie/main startpar amd64 0.59-3 [21.8 kB] Get:22 http://mirror-ubc.debian.org/debian/ jessie/main sysvinit-utils amd64 2.88dsf-59 [84.4 kB] Get:23 http://mirror-ubc.debian.org/debian/ jessie/main base-files amd64 8+deb8u11 [78.2 kB] Get:24 http://mirror-ubc.debian.org/debian/ jessie/main sysv-rc all 2.88dsf-59 [82.8 kB] Get:25 http://mirror-ubc.debian.org/debian/ jessie/main libaudit-common all 1:2.4-1 [13.5 kB] Get:26 http://mirror-ubc.debian.org/debian/ jessie/main libaudit1 amd64 1:2.4-1+b1 [44.7 kB] Get:27 http://mirror-ubc.debian.org/debian/ jessie/main libpam0g amd64 1.1.8-3.1+deb8u2+b1 [126 kB] Get:28 http://mirror-ubc.debian.org/debian/ jessie/main libsemanage-common all 2.3-1 [24.6 kB] Get:29 http://mirror-ubc.debian.org/debian/ jessie/main libsemanage1 amd64 2.3-1+b1 [90.2 kB] Get:30 http://mirror-ubc.debian.org/debian/ jessie/main libbz2-1.0 amd64 1.0.6-7+b3 [43.5 kB] Get:31 http://mirror-ubc.debian.org/debian/ jessie/main libsepol1 amd64 2.3-2 [127 kB] Get:32 http://mirror-ubc.debian.org/debian/ jessie/main libustr-1.0-1 amd64 1.0.4-3+b2 [79.6 kB] Get:33 http://mirror-ubc.debian.org/debian/ jessie/main libpam-modules-bin amd64 1.1.8-3.1+deb8u2+b1 [104 kB] Get:34 http://mirror-ubc.debian.org/debian/ jessie/main libpam-modules amd64 1.1.8-3.1+deb8u2+b1 [307 kB] Get:35 http://mirror-ubc.debian.org/debian/ jessie/main sensible-utils all 0.0.9+deb8u1 [10.9 kB] Get:36 http://mirror-ubc.debian.org/debian/ jessie/main debianutils amd64 4.4+b1 [99.1 kB] Get:37 http://mirror-ubc.debian.org/debian/ jessie/main passwd amd64 1:4.2-3+deb8u4 [971 kB] Get:38 http://mirror-ubc.debian.org/debian/ jessie/main libuuid1 amd64 2.25.2-6 [64.7 kB] Get:39 http://mirror-ubc.debian.org/debian/ jessie/main libblkid1 amd64 2.25.2-6 [156 kB] Get:40 http://mirror-ubc.debian.org/debian/ jessie/main libmount1 amd64 2.25.2-6 [164 kB] Get:41 http://mirror-ubc.debian.org/debian/ jessie/main libsmartcols1 amd64 2.25.2-6 [110 kB] Get:42 http://mirror-ubc.debian.org/debian/ jessie/main mount amd64 2.25.2-6 [168 kB] Get:43 http://mirror-ubc.debian.org/debian/ jessie/main lsb-base all 4.1+Debian13+nmu1 [26.7 kB] Get:44 http://mirror-ubc.debian.org/debian/ jessie/main coreutils amd64 8.23-4 [2727 kB] Get:45 http://mirror-ubc.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:46 http://mirror-ubc.debian.org/debian/ jessie/main ifupdown amd64 0.7.53.1 [67.2 kB] Get:47 http://mirror-ubc.debian.org/debian/ jessie/main initscripts amd64 2.88dsf-59 [87.2 kB] Get:48 http://mirror-ubc.debian.org/debian/ jessie/main proj-data amd64 4.8.0-5 [2085 kB] Get:49 http://mirror-ubc.debian.org/debian/ jessie/main libproj0 amd64 4.8.0-5 [144 kB] Get:50 http://mirror-ubc.debian.org/debian/ jessie/main libterm-readkey-perl amd64 2.32-1+b1 [28.0 kB] Get:51 http://mirror-ubc.debian.org/debian/ jessie/main libgsl0ldbl amd64 1.16+dfsg-2 [819 kB] Get:52 http://mirror-ubc.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:53 http://mirror-ubc.debian.org/debian/ jessie/main libhdf4-0-alt amd64 4.2.10-3 [271 kB] Get:54 http://mirror-ubc.debian.org/debian/ jessie/main pdl amd64 1:2.007-4 [3941 kB] Get:55 http://mirror-ubc.debian.org/debian/ jessie/main perl-doc all 5.20.2-3+deb8u11 [7347 kB] Get:56 http://mirror-ubc.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:57 http://mirror-ubc.debian.org/debian/ jessie/main libio-socket-ip-perl all 0.32-1 [28.1 kB] Get:58 http://mirror-ubc.debian.org/debian/ jessie/main libsocket-perl amd64 2.016-1 [37.2 kB] Get:59 http://mirror-ubc.debian.org/debian/ jessie/main libapr1 amd64 1.5.1-3 [95.3 kB] Get:60 http://mirror-ubc.debian.org/debian/ jessie/main libaprutil1-ldap amd64 1.5.4-1 [17.2 kB] Get:61 http://mirror-ubc.debian.org/debian/ jessie/main libaprutil1-dbd-sqlite3 amd64 1.5.4-1 [19.1 kB] Get:62 http://mirror-ubc.debian.org/debian/ jessie/main libaprutil1 amd64 1.5.4-1 [86.2 kB] Get:63 http://mirror-ubc.debian.org/debian/ jessie/main liblua5.1-0 amd64 5.1.5-7.1 [108 kB] Get:64 http://mirror-ubc.debian.org/debian/ jessie/main apache2-utils amd64 2.4.10-10+deb8u12 [196 kB] Get:65 http://mirror-ubc.debian.org/debian/ jessie/main libapache2-mod-perl2 amd64 2.0.9~1624218-2+deb8u2 [903 kB] Get:66 http://mirror-ubc.debian.org/debian/ jessie/main libapache2-reload-perl all 0.12-3 [17.3 kB] Get:67 http://mirror-ubc.debian.org/debian/ jessie/main apache2.2-common amd64 2.4.10-10+deb8u12 [126 kB] Get:68 http://mirror-ubc.debian.org/debian/ jessie/main apache2-data all 2.4.10-10+deb8u12 [163 kB] Get:69 http://mirror-ubc.debian.org/debian/ jessie/main apache2 amd64 2.4.10-10+deb8u12 [208 kB] Get:70 http://mirror-ubc.debian.org/debian/ jessie/main apache2-mpm-worker amd64 2.4.10-10+deb8u12 [1522 B] Get:71 http://mirror-ubc.debian.org/debian/ jessie/main apache2.2-bin amd64 2.4.10-10+deb8u12 [1702 B] Get:72 http://mirror-ubc.debian.org/debian/ jessie/main apache2-bin amd64 2.4.10-10+deb8u12 [1042 kB] Get:73 http://mirror-ubc.debian.org/debian/ jessie/main libperl5.20 amd64 5.20.2-3+deb8u11 [1362 B] Get:74 http://mirror-ubc.debian.org/debian/ jessie/main libtext-charwidth-perl amd64 0.04-7+b3 [10.7 kB] Get:75 http://mirror-ubc.debian.org/debian/ jessie/main libpackage-stash-xs-perl amd64 0.28-2+b1 [18.8 kB] Get:76 http://mirror-ubc.debian.org/debian/ jessie/main liblist-moreutils-perl amd64 0.33-2+b1 [44.4 kB] Get:77 http://mirror-ubc.debian.org/debian/ jessie/main libclone-perl amd64 0.37-1+b1 [14.2 kB] Get:78 http://mirror-ubc.debian.org/debian/ jessie/main libbit-vector-perl amd64 7.3-1+b2 [146 kB] Get:79 http://mirror-ubc.debian.org/debian/ jessie/main libdate-calc-xs-perl amd64 6.3-2 [54.0 kB] Get:80 http://mirror-ubc.debian.org/debian/ jessie/main libclass-load-perl all 0.22-1 [15.8 kB] Get:81 http://mirror-ubc.debian.org/debian/ jessie/main libclass-load-xs-perl amd64 0.08-1+b1 [15.0 kB] Get:82 http://mirror-ubc.debian.org/debian/ jessie/main libsub-name-perl amd64 0.12-1 [12.1 kB] Get:83 http://mirror-ubc.debian.org/debian/ jessie/main libio-pty-perl amd64 1:1.08-1+b4 [35.8 kB] Get:84 http://mirror-ubc.debian.org/debian/ jessie/main libipc-sharelite-perl amd64 0.17-3+b2 [24.9 kB] Get:85 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:86 http://mirror-ubc.debian.org/debian/ jessie/main libdbd-sqlite3-perl amd64 1.44-1 [156 kB] Get:87 http://mirror-ubc.debian.org/debian/ jessie/main libbsd-resource-perl amd64 1.2907-1+b2 [33.1 kB] Get:88 http://mirror-ubc.debian.org/debian/ jessie/main perl-base amd64 5.20.2-3+deb8u11 [1230 kB] Get:89 http://mirror-ubc.debian.org/debian/ jessie/main liblocale-gettext-perl amd64 1.05-8+b1 [19.0 kB] Get:90 http://mirror-ubc.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:91 http://mirror-ubc.debian.org/debian/ jessie/main libreadline6 amd64 6.3-8+b3 [143 kB] Get:92 http://mirror-ubc.debian.org/debian/ jessie/main libterm-readline-gnu-perl amd64 1.24-2+b1 [99.1 kB] Get:93 http://mirror-ubc.debian.org/debian/ jessie/main libsub-identify-perl amd64 0.08-1 [11.2 kB] Get:94 http://mirror-ubc.debian.org/debian/ jessie/main libxml-libxslt-perl amd64 1.92-1+b1 [47.7 kB] Get:95 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-diff-xs-perl amd64 0.04-3+b1 [12.2 kB] Get:96 http://mirror-ubc.debian.org/debian/ jessie/main ttf-dejavu-core all 2.34-1 [30.7 kB] Get:97 http://mirror-ubc.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:98 http://mirror-ubc.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:99 http://mirror-ubc.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:100 http://mirror-ubc.debian.org/debian/ jessie/main perl-tk amd64 1:804.032-3+b3 [2031 kB] Get:101 http://mirror-ubc.debian.org/debian/ jessie/main libdbd-mysql-perl amd64 4.028-2+deb8u2 [119 kB] Get:102 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-syck-perl amd64 1.27-2+b2 [80.5 kB] Get:103 http://mirror-ubc.debian.org/debian/ jessie/main libtext-iconv-perl amd64 1.7-5+b2 [16.2 kB] Get:104 http://mirror-ubc.debian.org/debian/ jessie/main libcrypt-ssleay-perl amd64 0.58-1+b2 [45.8 kB] Get:105 http://mirror-ubc.debian.org/debian/ jessie/main libdbd-pg-perl amd64 3.4.2-1 [203 kB] Get:106 http://mirror-ubc.debian.org/debian/ jessie/main libclass-c3-xs-perl amd64 0.13-2+b1 [15.2 kB] Get:107 http://mirror-ubc.debian.org/debian/ jessie/main libconvert-binary-c-perl amd64 0.76-3+b2 [274 kB] Get:108 http://mirror-ubc.debian.org/debian/ jessie/main libossp-uuid-perl amd64 1.6.2-1.5+b1 [30.2 kB] Get:109 http://mirror-ubc.debian.org/debian/ jessie/main libopengl-perl amd64 0.6703+dfsg-1+b1 [319 kB] Get:110 http://mirror-ubc.debian.org/debian/ jessie/main libparams-classify-perl amd64 0.013-4+b2 [24.1 kB] Get:111 http://mirror-ubc.debian.org/debian/ jessie/main libunicode-map-perl amd64 0.112-11+b1 [146 kB] Get:112 http://mirror-ubc.debian.org/debian/ jessie/main libace-perl amd64 1.92-3+b1 [310 kB] Get:113 http://mirror-ubc.debian.org/debian/ jessie/main libvariable-magic-perl amd64 0.55-1 [42.5 kB] Get:114 http://mirror-ubc.debian.org/debian/ jessie/main libfcgi-perl amd64 0.77-1+deb8u1 [39.0 kB] Get:115 http://mirror-ubc.debian.org/debian/ jessie/main libtfbs-perl amd64 0.6.1+dfsg-1+b1 [234 kB] Get:116 http://mirror-ubc.debian.org/debian/ jessie/main libxml-parser-perl amd64 2.41-3 [215 kB] Get:117 http://mirror-ubc.debian.org/debian/ jessie/main libdbi-perl amd64 1.631-3+b1 [816 kB] Get:118 http://mirror-ubc.debian.org/debian/ jessie/main libparams-util-perl amd64 1.07-2+b1 [23.5 kB] Get:119 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-stacktrace-perl all 1.3400-1 [23.9 kB] Get:120 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-runtime-perl all 0.014-1 [17.9 kB] Get:121 http://mirror-ubc.debian.org/debian/ jessie/main libdist-checkconflicts-perl all 0.11-1 [10.8 kB] Get:122 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-runtime-conflicts-perl all 0.001-1 [6846 B] Get:123 http://mirror-ubc.debian.org/debian/ jessie/main libmoose-perl amd64 2.1213-1 [880 kB] Get:124 http://mirror-ubc.debian.org/debian/ jessie/main libxml-libxml-perl amd64 2.0116+dfsg-1+deb8u2 [365 kB] Get:125 http://mirror-ubc.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:126 http://mirror-ubc.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:127 http://mirror-ubc.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:128 http://mirror-ubc.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:129 http://mirror-ubc.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:130 http://mirror-ubc.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:131 http://mirror-ubc.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:132 http://mirror-ubc.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:133 http://mirror-ubc.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:134 http://mirror-ubc.debian.org/debian/ jessie/main libsasl2-modules amd64 2.1.26.dfsg1-13+deb8u1 [101 kB] Get:135 http://mirror-ubc.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:136 http://mirror-ubc.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:137 http://mirror-ubc.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:138 http://mirror-ubc.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u4 [218 kB] Get:139 http://mirror-ubc.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:140 http://mirror-ubc.debian.org/debian/ jessie/main libprocps3 amd64 2:3.3.9-9+deb8u1 [56.7 kB] Get:141 http://mirror-ubc.debian.org/debian/ jessie/main libtinfo5 amd64 5.9+20140913-1+deb8u3 [282 kB] Get:142 http://mirror-ubc.debian.org/debian/ jessie/main libncurses5 amd64 5.9+20140913-1+deb8u3 [96.6 kB] Get:143 http://mirror-ubc.debian.org/debian/ jessie/main libncursesw5 amd64 5.9+20140913-1+deb8u3 [123 kB] Get:144 http://mirror-ubc.debian.org/debian/ jessie/main procps amd64 2:3.3.9-9+deb8u1 [236 kB] Get:145 http://mirror-ubc.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:146 http://mirror-ubc.debian.org/debian/ jessie/main liblzma5 amd64 5.1.1alpha+20120614-2+b3 [194 kB] Get:147 http://mirror-ubc.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:148 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-symdump-perl all 2.12-1 [17.1 kB] Get:149 http://mirror-ubc.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:150 http://mirror-ubc.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:151 http://mirror-ubc.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:152 http://mirror-ubc.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:153 http://mirror-ubc.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:154 http://mirror-ubc.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:155 http://mirror-ubc.debian.org/debian/ jessie/main libsoap-lite-perl all 1.11-1 [272 kB] Get:156 http://mirror-ubc.debian.org/debian/ jessie/main libio-sessiondata-perl all 1.03-1 [5782 B] Get:157 http://mirror-ubc.debian.org/debian/ jessie/main libclass-inspector-perl all 1.28-1 [20.8 kB] Get:158 http://mirror-ubc.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:159 http://mirror-ubc.debian.org/debian/ jessie/main libconvert-binhex-perl all 1.123-2 [30.2 kB] Get:160 http://mirror-ubc.debian.org/debian/ jessie/main libnet-smtp-ssl-perl all 1.01-3 [5996 B] Get:161 http://mirror-ubc.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:162 http://mirror-ubc.debian.org/debian/ jessie/main libmailtools-perl all 2.13-1 [96.6 kB] Get:163 http://mirror-ubc.debian.org/debian/ jessie/main libmime-tools-perl all 5.505-1 [226 kB] Get:164 http://mirror-ubc.debian.org/debian/ jessie/main libossp-uuid16 amd64 1.6.2-1.5+b1 [38.0 kB] Get:165 http://mirror-ubc.debian.org/debian/ jessie/main libtask-weaken-perl all 1.04-1 [7990 B] Get:166 http://mirror-ubc.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u8 [664 kB] Get:167 http://mirror-ubc.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:168 http://mirror-ubc.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:169 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:170 http://mirror-ubc.debian.org/debian/ jessie/main libdate-calc-perl all 6.3-2 [194 kB] Get:171 http://mirror-ubc.debian.org/debian/ jessie/main libsub-install-perl all 0.928-1 [11.4 kB] Get:172 http://mirror-ubc.debian.org/debian/ jessie/main libdata-optlist-perl all 0.109-1 [10.6 kB] Get:173 http://mirror-ubc.debian.org/debian/ jessie/main libtry-tiny-perl all 0.22-1 [19.6 kB] Get:174 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:175 http://mirror-ubc.debian.org/debian/ jessie/main libsub-exporter-progressive-perl all 0.001011-1 [7748 B] Get:176 http://mirror-ubc.debian.org/debian/ jessie/main libb-hooks-endofscope-perl all 0.13-1 [15.4 kB] Get:177 http://mirror-ubc.debian.org/debian/ jessie/main libpackage-stash-perl all 0.37-1 [20.8 kB] Get:178 http://mirror-ubc.debian.org/debian/ jessie/main libnamespace-clean-perl all 0.25-1 [15.4 kB] Get:179 http://mirror-ubc.debian.org/debian/ jessie/main readline-common all 6.3-8 [57.7 kB] Get:180 http://mirror-ubc.debian.org/debian/ jessie/main libgpg-error0 amd64 1.17-3 [94.9 kB] Get:181 http://mirror-ubc.debian.org/debian/ jessie/main libgcrypt20 amd64 1.6.3-2+deb8u4 [392 kB] Get:182 http://mirror-ubc.debian.org/debian/ jessie/main libxslt1.1 amd64 1.1.28-2+deb8u3 [232 kB] Get:183 http://mirror-ubc.debian.org/debian/ jessie/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:184 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-diff-perl all 1.19.02-3 [51.7 kB] Get:185 http://mirror-ubc.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:186 http://mirror-ubc.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:187 http://mirror-ubc.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:188 http://mirror-ubc.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:189 http://mirror-ubc.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:190 http://mirror-ubc.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:191 http://mirror-ubc.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:192 http://mirror-ubc.debian.org/debian/ jessie/main mysql-common all 5.5.60-0+deb8u1 [75.4 kB] Get:193 http://mirror-ubc.debian.org/debian/ jessie/main libmysqlclient18 amd64 5.5.60-0+deb8u1 [671 kB] Get:194 http://mirror-ubc.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:195 http://mirror-ubc.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:196 http://mirror-ubc.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:197 http://mirror-ubc.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:198 http://mirror-ubc.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:199 http://mirror-ubc.debian.org/debian/ jessie/main libcomerr2 amd64 1.42.12-2+b1 [60.7 kB] Get:200 http://mirror-ubc.debian.org/debian/ jessie/main libpq5 amd64 9.4.18-0+deb8u1 [128 kB] Get:201 http://mirror-ubc.debian.org/debian/ jessie/main libgl1-mesa-dri amd64 10.3.2-1+deb8u1 [3384 kB] Get:202 http://mirror-ubc.debian.org/debian/ jessie/main libgl1-mesa-glx amd64 10.3.2-1+deb8u1 [180 kB] Get:203 http://mirror-ubc.debian.org/debian/ jessie/main libglapi-mesa amd64 10.3.2-1+deb8u1 [53.3 kB] Get:204 http://mirror-ubc.debian.org/debian/ jessie/main libxcb-dri2-0 amd64 1.10-3+b1 [12.9 kB] Get:205 http://mirror-ubc.debian.org/debian/ jessie/main libxcb-dri3-0 amd64 1.10-3+b1 [11.1 kB] Get:206 http://mirror-ubc.debian.org/debian/ jessie/main libxcb-present0 amd64 1.10-3+b1 [11.1 kB] Get:207 http://mirror-ubc.debian.org/debian/ jessie/main libxcb-sync1 amd64 1.10-3+b1 [14.4 kB] Get:208 http://mirror-ubc.debian.org/debian/ jessie/main libxshmfence1 amd64 1.1-4 [6736 B] Get:209 http://mirror-ubc.debian.org/debian/ jessie/main libudev1 amd64 215-17+deb8u7 [57.8 kB] Get:210 http://mirror-ubc.debian.org/debian/ jessie/main libdrm2 amd64 2.4.58-2 [29.9 kB] Get:211 http://mirror-ubc.debian.org/debian/ jessie/main libpciaccess0 amd64 0.13.2-3+b1 [47.6 kB] Get:212 http://mirror-ubc.debian.org/debian/ jessie/main libdrm-intel1 amd64 2.4.58-2 [64.9 kB] Get:213 http://mirror-ubc.debian.org/debian/ jessie/main libdrm-nouveau2 amd64 2.4.58-2 [21.6 kB] Get:214 http://mirror-ubc.debian.org/debian/ jessie/main libelf1 amd64 0.159-4.2 [160 kB] Get:215 http://mirror-ubc.debian.org/debian/ jessie/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:216 http://mirror-ubc.debian.org/debian/ jessie/main libedit2 amd64 3.1-20140620-2 [85.1 kB] Get:217 http://mirror-ubc.debian.org/debian/ jessie/main libllvm3.5 amd64 1:3.5-10 [7607 kB] Get:218 http://mirror-ubc.debian.org/debian/ jessie/main libdrm-radeon1 amd64 2.4.58-2 [31.1 kB] Get:219 http://mirror-ubc.debian.org/debian/ jessie/main libx11-xcb1 amd64 2:1.6.2-3+deb8u1 [163 kB] Get:220 http://mirror-ubc.debian.org/debian/ jessie/main libxcb-glx0 amd64 1.10-3+b1 [27.4 kB] Get:221 http://mirror-ubc.debian.org/debian/ jessie/main libxfixes3 amd64 1:5.0.1-2+deb8u1 [21.1 kB] Get:222 http://mirror-ubc.debian.org/debian/ jessie/main libxdamage1 amd64 1:1.1.4-2+b1 [14.7 kB] Get:223 http://mirror-ubc.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:224 http://mirror-ubc.debian.org/debian/ jessie/main libxxf86vm1 amd64 1:1.1.3-1+b1 [19.6 kB] Get:225 http://mirror-ubc.debian.org/debian/ jessie/main libxi6 amd64 2:1.7.4-1+deb8u1 [79.9 kB] Get:226 http://mirror-ubc.debian.org/debian/ jessie/main freeglut3 amd64 2.8.1-2 [124 kB] Get:227 http://mirror-ubc.debian.org/debian/ jessie/main libglu1-mesa amd64 9.0.0-2 [163 kB] Get:228 http://mirror-ubc.debian.org/debian/ jessie/main liberror-perl all 0.17-1.1 [22.4 kB] Get:229 http://mirror-ubc.debian.org/debian/ jessie/main libcache-cache-perl all 1.07-2 [76.2 kB] Get:230 http://mirror-ubc.debian.org/debian/ jessie/main libio-string-perl all 1.08-3 [12.3 kB] Get:231 http://mirror-ubc.debian.org/debian/ jessie/main libdata-stag-perl all 0.13-1 [476 kB] Get:232 http://mirror-ubc.debian.org/debian/ jessie/main bioperl all 1.6.924-1 [419 kB] Get:233 http://mirror-ubc.debian.org/debian/ jessie/main libbio-perl-perl all 1.6.924-1 [4763 kB] Get:234 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-globaldestruction-perl all 0.13-1 [8676 B] Get:235 http://mirror-ubc.debian.org/debian/ jessie/main libsub-exporter-perl all 0.986-1 [49.9 kB] Get:236 http://mirror-ubc.debian.org/debian/ jessie/main libeval-closure-perl all 0.11-1 [11.6 kB] Get:237 http://mirror-ubc.debian.org/debian/ jessie/main libalgorithm-c3-perl all 0.09-1 [11.9 kB] Get:238 http://mirror-ubc.debian.org/debian/ jessie/main libclass-c3-perl all 0.26-1 [22.9 kB] Get:239 http://mirror-ubc.debian.org/debian/ jessie/main libmro-compat-perl all 0.12-1 [13.2 kB] Get:240 http://mirror-ubc.debian.org/debian/ jessie/main debconf all 1.5.56+deb8u1 [167 kB] Get:241 http://mirror-ubc.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] Get:242 http://mirror-ubc.debian.org/debian/ jessie/main fonts-liberation all 1.07.4-1 [835 kB] Get:243 http://mirror-ubc.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:244 http://mirror-ubc.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:245 http://mirror-ubc.debian.org/debian/ jessie/main libvpx1 amd64 1.3.0-3+deb8u1 [600 kB] Get:246 http://mirror-ubc.debian.org/debian/ jessie/main libxpm4 amd64 1:3.5.12-0+deb8u1 [49.2 kB] Get:247 http://mirror-ubc.debian.org/debian/ jessie/main libgd3 amd64 2.1.0-5+deb8u11 [148 kB] Get:248 http://mirror-ubc.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:249 http://mirror-ubc.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:250 http://mirror-ubc.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:251 http://mirror-ubc.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:252 http://mirror-ubc.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:253 http://mirror-ubc.debian.org/debian/ jessie/main libltdl7 amd64 2.4.2-1.11+b1 [45.4 kB] Get:254 http://mirror-ubc.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:255 http://mirror-ubc.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:256 http://mirror-ubc.debian.org/debian/ jessie/main libpango1.0-0 amd64 1.36.8-3 [183 kB] Get:257 http://mirror-ubc.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:258 http://mirror-ubc.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:259 http://mirror-ubc.debian.org/debian/ jessie/main libpangox-1.0-0 amd64 0.0.2-5 [42.0 kB] Get:260 http://mirror-ubc.debian.org/debian/ jessie/main libpangoxft-1.0-0 amd64 1.36.8-3 [195 kB] Get:261 http://mirror-ubc.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:262 http://mirror-ubc.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:263 http://mirror-ubc.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:264 http://mirror-ubc.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:265 http://mirror-ubc.debian.org/debian/ jessie/main libpathplan4 amd64 2.38.0-7 [66.0 kB] Get:266 http://mirror-ubc.debian.org/debian/ jessie/main libxdot4 amd64 2.38.0-7 [58.7 kB] Get:267 http://mirror-ubc.debian.org/debian/ jessie/main graphviz amd64 2.38.0-7 [717 kB] Get:268 http://mirror-ubc.debian.org/debian/ jessie/main libgvc6 amd64 2.38.0-7 [637 kB] Get:269 http://mirror-ubc.debian.org/debian/ jessie/main libgvpr2 amd64 2.38.0-7 [212 kB] Get:270 http://mirror-ubc.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:271 http://mirror-ubc.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:272 http://mirror-ubc.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:273 http://mirror-ubc.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:274 http://mirror-ubc.debian.org/debian/ jessie/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:275 http://mirror-ubc.debian.org/debian/ jessie/main libxaw7 amd64 2:1.0.12-2+b1 [199 kB] Get:276 http://mirror-ubc.debian.org/debian/ jessie/main libnuma1 amd64 2.0.10-1 [32.5 kB] Get:277 http://mirror-ubc.debian.org/debian/ jessie/main libhwloc5 amd64 1.10.0-3 [86.9 kB] Get:278 http://mirror-ubc.debian.org/debian/ jessie/main libcr0 amd64 0.8.5-2.2 [32.7 kB] Get:279 http://mirror-ubc.debian.org/debian/ jessie/main fftw2 amd64 2.1.5-1+b1 [290 kB] Get:280 http://mirror-ubc.debian.org/debian/ jessie/main libibverbs1 amd64 1.1.8-1.1 [32.2 kB] Get:281 http://mirror-ubc.debian.org/debian/ jessie/main libopenmpi1.6 amd64 1.6.5-9.1+deb8u1 [1455 kB] Get:282 http://mirror-ubc.debian.org/debian/ jessie/main bash amd64 4.3-11+deb8u1 [1172 kB] Get:283 http://mirror-ubc.debian.org/debian/ jessie/main libsystemd0 amd64 215-17+deb8u7 [89.4 kB] Get:284 http://mirror-ubc.debian.org/debian/ jessie/main bsdutils amd64 1:2.25.2-6 [94.0 kB] Get:285 http://mirror-ubc.debian.org/debian/ jessie/main dash amd64 0.5.7-4+b1 [109 kB] Get:286 http://mirror-ubc.debian.org/debian/ jessie/main diffutils amd64 1:3.3-1+b1 [267 kB] Get:287 http://mirror-ubc.debian.org/debian/ jessie/main e2fslibs amd64 1.42.12-2+b1 [186 kB] Get:288 http://mirror-ubc.debian.org/debian/ jessie/main e2fsprogs amd64 1.42.12-2+b1 [750 kB] Get:289 http://mirror-ubc.debian.org/debian/ jessie/main findutils amd64 4.4.2-9+b1 [485 kB] Get:290 http://mirror-ubc.debian.org/debian/ jessie/main grep amd64 2.20-4.1 [325 kB] Get:291 http://mirror-ubc.debian.org/debian/ jessie/main gzip amd64 1.6-4 [111 kB] Get:292 http://mirror-ubc.debian.org/debian/ jessie/main hostname amd64 3.15 [13.9 kB] Get:293 http://mirror-ubc.debian.org/debian/ jessie/main tzdata all 2018e-0+deb8u1 [233 kB] Get:294 http://mirror-ubc.debian.org/debian/ jessie/main util-linux amd64 2.25.2-6 [845 kB] Get:295 http://mirror-ubc.debian.org/debian/ jessie/main libdevmapper1.02.1 amd64 2:1.02.90-2.2+deb8u1 [145 kB] Get:296 http://mirror-ubc.debian.org/debian/ jessie/main dmsetup amd64 2:1.02.90-2.2+deb8u1 [69.1 kB] Get:297 http://mirror-ubc.debian.org/debian/ jessie/main libcryptsetup4 amd64 2:1.6.6-5 [103 kB] Get:298 http://mirror-ubc.debian.org/debian/ jessie/main libkmod2 amd64 18-3 [46.2 kB] Get:299 http://mirror-ubc.debian.org/debian/ jessie/main libattr1 amd64 1:2.4.47-2 [18.3 kB] Get:300 http://mirror-ubc.debian.org/debian/ jessie/main libacl1 amd64 2.2.52-2 [27.9 kB] Get:301 http://mirror-ubc.debian.org/debian/ jessie/main udev amd64 215-17+deb8u7 [876 kB] Get:302 http://mirror-ubc.debian.org/debian/ jessie/main acl amd64 2.2.52-2 [58.4 kB] Get:303 http://mirror-ubc.debian.org/debian/ jessie/main libcap2 amd64 1:2.24-8 [15.3 kB] Get:304 http://mirror-ubc.debian.org/debian/ jessie/main libcap2-bin amd64 1:2.24-8 [25.4 kB] Get:305 http://mirror-ubc.debian.org/debian/ jessie/main systemd amd64 215-17+deb8u7 [2545 kB] Get:306 http://mirror-ubc.debian.org/debian/ jessie/main systemd-sysv amd64 215-17+deb8u7 [36.7 kB] Get:307 http://mirror-ubc.debian.org/debian/ jessie/main init amd64 1.22 [4674 B] Get:308 http://mirror-ubc.debian.org/debian/ jessie/main login amd64 1:4.2-3+deb8u4 [722 kB] Get:309 http://mirror-ubc.debian.org/debian/ jessie/main ncurses-bin amd64 5.9+20140913-1+deb8u3 [347 kB] Get:310 http://mirror-ubc.debian.org/debian/ jessie/main sed amd64 4.2.2-4+deb8u1 [243 kB] Get:311 http://mirror-ubc.debian.org/debian/ jessie/main tar amd64 1.27.1-2+deb8u1 [676 kB] Get:312 http://mirror-ubc.debian.org/debian/ jessie/main sysvinit amd64 2.88dsf-59 [99.9 kB] Get:313 http://mirror-ubc.debian.org/debian/ jessie/main libapt-pkg4.12 amd64 1.0.9.8.4 [792 kB] Get:314 http://mirror-ubc.debian.org/debian/ jessie/main gpgv amd64 1.4.18-7+deb8u5 [209 kB] Get:315 http://mirror-ubc.debian.org/debian/ jessie/main debian-archive-keyring all 2017.5~deb8u1 [56.7 kB] Get:316 http://mirror-ubc.debian.org/debian/ jessie/main libusb-0.1-4 amd64 2:0.1.12-25 [21.9 kB] Get:317 http://mirror-ubc.debian.org/debian/ jessie/main gnupg amd64 1.4.18-7+deb8u5 [1150 kB] Get:318 http://mirror-ubc.debian.org/debian/ jessie/main apt amd64 1.0.9.8.4 [1109 kB] Get:319 http://mirror-ubc.debian.org/debian/ jessie/main libdebconfclient0 amd64 0.192 [46.2 kB] Get:320 http://mirror-ubc.debian.org/debian/ jessie/main base-passwd amd64 3.5.37 [64.5 kB] Get:321 http://mirror-ubc.debian.org/debian/ jessie/main ncurses-base all 5.9+20140913-1+deb8u3 [222 kB] Get:322 http://mirror-ubc.debian.org/debian/ jessie/main libslang2 amd64 2.3.0-2 [491 kB] Get:323 http://mirror-ubc.debian.org/debian/ jessie/main libss2 amd64 1.42.12-2+b1 [65.0 kB] Get:324 http://mirror-ubc.debian.org/debian/ jessie/main libgpm2 amd64 1.20.4-6.1+b2 [34.0 kB] Get:325 http://mirror-ubc.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:326 http://mirror-ubc.debian.org/debian/ jessie/main file amd64 1:5.22+15-2+deb8u4 [60.5 kB] Get:327 http://mirror-ubc.debian.org/debian/ jessie/main libmagic1 amd64 1:5.22+15-2+deb8u4 [250 kB] Get:328 http://mirror-ubc.debian.org/debian/ jessie/main libpython2.7-minimal amd64 2.7.9-2+deb8u1 [378 kB] Get:329 http://mirror-ubc.debian.org/debian/ jessie/main python2.7-minimal amd64 2.7.9-2+deb8u1 [1401 kB] Get:330 http://mirror-ubc.debian.org/debian/ jessie/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:331 http://mirror-ubc.debian.org/debian/ jessie/main libpython2.7-stdlib amd64 2.7.9-2+deb8u1 [1847 kB] Get:332 http://mirror-ubc.debian.org/debian/ jessie/main python2.7 amd64 2.7.9-2+deb8u1 [252 kB] Get:333 http://mirror-ubc.debian.org/debian/ jessie/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:334 http://mirror-ubc.debian.org/debian/ jessie/main python amd64 2.7.9-1 [151 kB] Get:335 http://mirror-ubc.debian.org/debian/ jessie/main fonts-droid all 1:4.4.4r2-6 [3729 kB] Get:336 http://mirror-ubc.debian.org/debian/ jessie/main libavahi-common-data amd64 0.6.31-5 [98.6 kB] Get:337 http://mirror-ubc.debian.org/debian/ jessie/main libavahi-common3 amd64 0.6.31-5 [51.1 kB] Get:338 http://mirror-ubc.debian.org/debian/ jessie/main libdbus-1-3 amd64 1.8.22-0+deb8u1 [170 kB] Get:339 http://mirror-ubc.debian.org/debian/ jessie/main libavahi-client3 amd64 0.6.31-5 [54.4 kB] Get:340 http://mirror-ubc.debian.org/debian/ jessie/main libcap-ng0 amd64 0.7.4-2 [13.2 kB] Get:341 http://mirror-ubc.debian.org/debian/ jessie/main libqhull6 amd64 2012.1-5 [183 kB] Get:342 http://mirror-ubc.debian.org/debian/ jessie/main libcsiro0 amd64 5.10.0+dfsg-1 [58.3 kB] Get:343 http://mirror-ubc.debian.org/debian/ jessie/main libcupsfilters1 amd64 1.0.61-5+deb8u3 [106 kB] Get:344 http://mirror-ubc.debian.org/debian/ jessie/main libcupsimage2 amd64 1.7.5-11+deb8u2 [117 kB] Get:345 http://mirror-ubc.debian.org/debian/ jessie/main libcups2 amd64 1.7.5-11+deb8u2 [284 kB] Get:346 http://mirror-ubc.debian.org/debian/ jessie/main libisc-export95 amd64 1:9.9.5.dfsg-9+deb8u15 [141 kB] Get:347 http://mirror-ubc.debian.org/debian/ jessie/main libdns-export100 amd64 1:9.9.5.dfsg-9+deb8u15 [457 kB] Get:348 http://mirror-ubc.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10+deb8u1 [37.8 kB] Get:349 http://mirror-ubc.debian.org/debian/ jessie/main libijs-0.35 amd64 0.35-10 [20.0 kB] Get:350 http://mirror-ubc.debian.org/debian/ jessie/main libisccfg-export90 amd64 1:9.9.5.dfsg-9+deb8u15 [41.5 kB] Get:351 http://mirror-ubc.debian.org/debian/ jessie/main libirs-export91 amd64 1:9.9.5.dfsg-9+deb8u15 [39.2 kB] Get:352 http://mirror-ubc.debian.org/debian/ jessie/main libjasper1 amd64 1.900.1-debian1-2.4+deb8u3 [134 kB] Get:353 http://mirror-ubc.debian.org/debian/ jessie/main liblcms2-2 amd64 2.6-3+deb8u1 [141 kB] Get:354 http://mirror-ubc.debian.org/debian/ jessie/main libncbi6 amd64 6.1.20120620-8 [3769 kB] Get:355 http://mirror-ubc.debian.org/debian/ jessie/main ncbi-data all 6.1.20120620-8 [3320 kB] Get:356 http://mirror-ubc.debian.org/debian/ jessie/main libpam-runtime all 1.1.8-3.1+deb8u2 [212 kB] Get:357 http://mirror-ubc.debian.org/debian/ jessie/main dbus amd64 1.8.22-0+deb8u1 [292 kB] Get:358 http://mirror-ubc.debian.org/debian/ jessie/main libpam-systemd amd64 215-17+deb8u7 [126 kB] Get:359 http://mirror-ubc.debian.org/debian/ jessie/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:360 http://mirror-ubc.debian.org/debian/ jessie/main libqsastime0 amd64 5.10.0+dfsg-1 [43.0 kB] Get:361 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-0-2 amd64 0.1.6-3 [50.4 kB] Get:362 http://mirror-ubc.debian.org/debian/ jessie/main poppler-data all 0.4.7-1 [1491 kB] Get:363 http://mirror-ubc.debian.org/debian/ jessie/main libsystemd-login0 amd64 215-17+deb8u7 [49.8 kB] Get:364 http://mirror-ubc.debian.org/debian/ jessie/main libtxc-dxtn-s2tc0 amd64 0~git20131104-1.1 [51.6 kB] Get:365 http://mirror-ubc.debian.org/debian/ jessie/main ocl-icd-libopencl1 amd64 2.2.3-1+deb8u1 [33.6 kB] Get:366 http://mirror-ubc.debian.org/debian/ jessie/main multiarch-support amd64 2.19-18+deb8u10 [181 kB] Get:367 http://mirror-ubc.debian.org/debian/ jessie/main isc-dhcp-common amd64 4.3.1-6+deb8u3 [211 kB] Get:368 http://mirror-ubc.debian.org/debian/ jessie/main isc-dhcp-client amd64 4.3.1-6+deb8u3 [250 kB] Get:369 http://mirror-ubc.debian.org/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1 [67.6 kB] Get:370 http://mirror-ubc.debian.org/debian/ jessie/main debconf-i18n all 1.5.56+deb8u1 [206 kB] Get:371 http://mirror-ubc.debian.org/debian/ jessie/main krb5-locales all 1.12.1+dfsg-19+deb8u4 [2649 kB] Get:372 http://mirror-ubc.debian.org/debian/ jessie/main libclass-isa-perl all 0.36-5 [10.1 kB] Get:373 http://mirror-ubc.debian.org/debian/ jessie/main libswitch-perl all 2.17-2 [20.5 kB] Get:374 http://mirror-ubc.debian.org/debian/ jessie/main xz-utils amd64 5.1.1alpha+20120614-2+b3 [221 kB] Get:375 http://mirror-ubc.debian.org/debian/ jessie/main amap-align amd64 2.2-4 [132 kB] Get:376 http://mirror-ubc.debian.org/debian/ jessie/main bedtools amd64 2.21.0-1 [608 kB] Get:377 http://mirror-ubc.debian.org/debian/ jessie/main bioperl-run all 1.6.9-2 [44.0 kB] Get:378 http://mirror-ubc.debian.org/debian/ jessie/main libbio-perl-run-perl all 1.6.9-2 [753 kB] Get:379 http://mirror-ubc.debian.org/debian/ jessie/main blast2 amd64 1:2.2.26.20120620-8 [559 kB] Get:380 http://mirror-ubc.debian.org/debian/ jessie/main bwa amd64 0.7.10-1 [169 kB] Get:381 http://mirror-ubc.debian.org/debian/ jessie/main libargtable2-0 amd64 12-1.1 [17.2 kB] Get:382 http://mirror-ubc.debian.org/debian/ jessie/main clustalo amd64 1.2.1-1 [251 kB] Get:383 http://mirror-ubc.debian.org/debian/ jessie/main clustalw amd64 2.1+lgpl-4 [276 kB] Get:384 http://mirror-ubc.debian.org/debian/ jessie/main dialign amd64 2.2.1-7 [135 kB] Get:385 http://mirror-ubc.debian.org/debian/ jessie/main dialign-tx-data all 1.0.2-7 [880 kB] Get:386 http://mirror-ubc.debian.org/debian/ jessie/main dialign-tx amd64 1.0.2-7 [83.0 kB] Get:387 http://mirror-ubc.debian.org/debian/ jessie/main libhpdf-2.2.1 amd64 2.2.1-1.1 [322 kB] Get:388 http://mirror-ubc.debian.org/debian/ jessie/main emboss amd64 6.6.0+dfsg-1 [1023 kB] Get:389 http://mirror-ubc.debian.org/debian/ jessie/main emboss-lib amd64 6.6.0+dfsg-1 [3102 kB] Get:390 http://mirror-ubc.debian.org/debian/ jessie/main emboss-data all 6.6.0+dfsg-1 [60.8 MB] Get:391 http://mirror-ubc.debian.org/debian/ jessie/main libjbig2dec0 amd64 0.13-4~deb8u2 [60.2 kB] Get:392 http://mirror-ubc.debian.org/debian/ jessie/main ghostscript amd64 9.06~dfsg-2+deb8u7 [85.1 kB] Get:393 http://mirror-ubc.debian.org/debian/ jessie/main libgs9 amd64 9.06~dfsg-2+deb8u7 [1918 kB] Get:394 http://mirror-ubc.debian.org/debian/ jessie/main libgs9-common all 9.06~dfsg-2+deb8u7 [1981 kB] Get:395 http://mirror-ubc.debian.org/debian/ jessie/main hmmer amd64 3.1b1-3 [1026 kB] Get:396 http://mirror-ubc.debian.org/debian/ jessie/main infernal amd64 1.1.1-2 [1862 kB] Get:397 http://mirror-ubc.debian.org/debian/ jessie/main javascript-common all 11 [6120 B] Get:398 http://mirror-ubc.debian.org/debian/ jessie/main libapache-dbi-perl all 1.12-1 [54.6 kB] Get:399 http://mirror-ubc.debian.org/debian/ jessie/main libarchive-extract-perl all 0.72-1 [24.8 kB] Get:400 http://mirror-ubc.debian.org/debian/ jessie/main libclass-method-modifiers-perl all 2.11-1 [18.5 kB] Get:401 http://mirror-ubc.debian.org/debian/ jessie/main libimport-into-perl all 1.002004-1 [11.5 kB] Get:402 http://mirror-ubc.debian.org/debian/ jessie/main librole-tiny-perl all 1.003004-1 [19.4 kB] Get:403 http://mirror-ubc.debian.org/debian/ jessie/main libstrictures-perl all 1.005005-1 [13.5 kB] Get:404 http://mirror-ubc.debian.org/debian/ jessie/main libmoo-perl all 1.006001-1 [62.7 kB] Get:405 http://mirror-ubc.debian.org/debian/ jessie/main libexporter-tiny-perl all 0.038-2 [28.7 kB] Get:406 http://mirror-ubc.debian.org/debian/ jessie/main libtype-tiny-perl all 1.000004-1 [269 kB] Get:407 http://mirror-ubc.debian.org/debian/ jessie/main libarray-compare-perl all 2.11-1 [14.2 kB] Get:408 http://mirror-ubc.debian.org/debian/ jessie/main libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:409 http://mirror-ubc.debian.org/debian/ jessie/main libb-hooks-op-check-perl amd64 0.19-2+b1 [11.3 kB] Get:410 http://mirror-ubc.debian.org/debian/ jessie/main liblexical-sealrequirehints-perl amd64 0.007-1+b2 [14.4 kB] Get:411 http://mirror-ubc.debian.org/debian/ jessie/main libbareword-filehandles-perl amd64 0.003-1+b2 [8922 B] Get:412 http://mirror-ubc.debian.org/debian/ jessie/main libbio-asn1-entrezgene-perl all 1.700-1 [40.9 kB] Get:413 http://mirror-ubc.debian.org/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213 kB] Get:414 http://mirror-ubc.debian.org/debian/ jessie/main libcgi-fast-perl all 1:2.04-1 [10.9 kB] Get:415 http://mirror-ubc.debian.org/debian/ jessie/main libclass-tiny-perl all 1.000-1 [17.8 kB] Get:416 http://mirror-ubc.debian.org/debian/ jessie/main libclass-xsaccessor-perl amd64 1.19-2+b4 [39.0 kB] Get:417 http://mirror-ubc.debian.org/debian/ jessie/main libcpan-meta-perl all 2.142690-1 [125 kB] Get:418 http://mirror-ubc.debian.org/debian/ jessie/main libcrypt-rc4-perl all 2.02-2 [8150 B] Get:419 http://mirror-ubc.debian.org/debian/ jessie/main libdata-section-perl all 0.200006-1 [13.4 kB] Get:420 http://mirror-ubc.debian.org/debian/ jessie/main libdate-manip-perl all 6.47-1 [923 kB] Get:421 http://mirror-ubc.debian.org/debian/ jessie/main libpadwalker-perl amd64 1.98-1+b1 [20.7 kB] Get:422 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-caller-perl amd64 2.06-1+b2 [12.7 kB] Get:423 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-lexalias-perl amd64 0.05-1+b2 [9686 B] Get:424 http://mirror-ubc.debian.org/debian/ jessie/main libdevel-partialdump-perl all 0.17-1 [14.5 kB] Get:425 http://mirror-ubc.debian.org/debian/ jessie/main libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:426 http://mirror-ubc.debian.org/debian/ jessie/main libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:427 http://mirror-ubc.debian.org/debian/ jessie/main libglib2.0-data all 2.42.1-1 [2173 kB] Get:428 http://mirror-ubc.debian.org/debian/ jessie/main libgraph-perl all 1:0.96-1.1 [126 kB] Get:429 http://mirror-ubc.debian.org/debian/ jessie/main libipc-run-perl all 0.92-1+deb8u1 [101 kB] Get:430 http://mirror-ubc.debian.org/debian/ jessie/main libxml-twig-perl all 1:3.48-1 [178 kB] Get:431 http://mirror-ubc.debian.org/debian/ jessie/main libgraphviz-perl all 2.16-1 [111 kB] Get:432 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-format-perl all 2.11-1 [43.1 kB] Get:433 http://mirror-ubc.debian.org/debian/ jessie/main libhtml-tableextract-perl all 2.11-1 [32.0 kB] Get:434 http://mirror-ubc.debian.org/debian/ jessie/main libindirect-perl amd64 0.33-1 [26.4 kB] Get:435 http://mirror-ubc.debian.org/debian/ jessie/main libjs-jquery all 1.7.2+dfsg-3.2 [97.5 kB] Get:436 http://mirror-ubc.debian.org/debian/ jessie/main liblog-message-perl all 0.8-1 [26.0 kB] Get:437 http://mirror-ubc.debian.org/debian/ jessie/main liblog-message-simple-perl all 0.10-2 [8126 B] Get:438 http://mirror-ubc.debian.org/debian/ jessie/main libmath-spline-perl all 0.02-1 [7992 B] Get:439 http://mirror-ubc.debian.org/debian/ jessie/main libmldbm-perl all 2.05-1 [18.3 kB] Get:440 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-build-perl all 0.421000-2+deb8u1 [265 kB] Get:441 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-pluggable-perl all 5.1-1 [25.0 kB] Get:442 http://mirror-ubc.debian.org/debian/ jessie/main libmodule-signature-perl all 0.73-1+deb8u2 [30.4 kB] Get:443 http://mirror-ubc.debian.org/debian/ jessie/main libmultidimensional-perl amd64 0.010-1+b2 [8506 B] Get:444 http://mirror-ubc.debian.org/debian/ jessie/main libpackage-constants-perl all 0.04-1 [5820 B] Get:445 http://mirror-ubc.debian.org/debian/ jessie/main libpam-cap amd64 1:2.24-8 [12.5 kB] Get:446 http://mirror-ubc.debian.org/debian/ jessie/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:447 http://mirror-ubc.debian.org/debian/ jessie/main libpod-latex-perl all 0.61-1 [34.7 kB] Get:448 http://mirror-ubc.debian.org/debian/ jessie/main libregexp-common-perl all 2013031301-1 [173 kB] Get:449 http://mirror-ubc.debian.org/debian/ jessie/main libpod-readme-perl all 0.11-1 [15.3 kB] Get:450 http://mirror-ubc.debian.org/debian/ jessie/main libtext-template-perl all 1.46-1 [53.1 kB] Get:451 http://mirror-ubc.debian.org/debian/ jessie/main libsoftware-license-perl all 0.103010-3 [119 kB] Get:452 http://mirror-ubc.debian.org/debian/ jessie/main libsort-naturally-perl all 1.03-1 [13.9 kB] Get:453 http://mirror-ubc.debian.org/debian/ jessie/main libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:454 http://mirror-ubc.debian.org/debian/ jessie/main libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:455 http://mirror-ubc.debian.org/debian/ jessie/main libstatistics-descriptive-perl all 3.0607-1 [41.4 kB] Get:456 http://mirror-ubc.debian.org/debian/ jessie/main libsvg-perl all 2.59-1 [75.2 kB] Get:457 http://mirror-ubc.debian.org/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1 kB] Get:458 http://mirror-ubc.debian.org/debian/ jessie/main libtext-soundex-perl amd64 3.4-1+b2 [13.7 kB] Get:459 http://mirror-ubc.debian.org/debian/ jessie/main libtie-ixhash-perl all 1.23-1 [12.2 kB] Get:460 http://mirror-ubc.debian.org/debian/ jessie/main libtree-dagnode-perl all 1.22-1 [59.5 kB] Get:461 http://mirror-ubc.debian.org/debian/ jessie/main libtype-tiny-xs-perl amd64 0.010-1 [27.1 kB] Get:462 http://mirror-ubc.debian.org/debian/ jessie/main libxml-sax-writer-perl all 0.54-1 [23.4 kB] Get:463 http://mirror-ubc.debian.org/debian/ jessie/main libxml-writer-perl all 0.625-1 [29.7 kB] Get:464 http://mirror-ubc.debian.org/debian/ jessie/main libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:465 http://mirror-ubc.debian.org/debian/ jessie/main libyaml-perl all 1.13-1 [69.7 kB] Get:466 http://mirror-ubc.debian.org/debian/ jessie/main mafft amd64 7.205-1 [775 kB] Get:467 http://mirror-ubc.debian.org/debian/ jessie/main mustang amd64 3.2.2-1 [112 kB] Get:468 http://mirror-ubc.debian.org/debian/ jessie/main ncbi-blast+ amd64 2.2.29-3 [7965 kB] Get:469 http://mirror-ubc.debian.org/debian/ jessie/main phyml amd64 2:20120412-2 [939 kB] Get:470 http://mirror-ubc.debian.org/debian/ jessie/main poa amd64 2.0+20060928-3 [50.8 kB] Get:471 http://mirror-ubc.debian.org/debian/ jessie/main prank amd64 0.0.140110-1 [327 kB] Get:472 http://mirror-ubc.debian.org/debian/ jessie/main primer3 amd64 2.3.6-1 [168 kB] Get:473 http://mirror-ubc.debian.org/debian/ jessie/main probalign amd64 1.4-3 [67.9 kB] Get:474 http://mirror-ubc.debian.org/debian/ jessie/main proda amd64 1.0-8 [58.3 kB] Get:475 http://mirror-ubc.debian.org/debian/ jessie/main psmisc amd64 22.21-2 [119 kB] Get:476 http://mirror-ubc.debian.org/debian/ jessie/main rename all 0.20-3 [12.4 kB] Get:477 http://mirror-ubc.debian.org/debian/ jessie/main rubygems-integration all 1.8 [4514 B] Get:478 http://mirror-ubc.debian.org/debian/ jessie/main libruby2.1 amd64 2.1.5-2+deb8u3 [3290 kB] Get:479 http://mirror-ubc.debian.org/debian/ jessie/main ruby2.1 amd64 2.1.5-2+deb8u3 [276 kB] Get:480 http://mirror-ubc.debian.org/debian/ jessie/main ruby all 1:2.1.5+deb8u2 [9688 B] Get:481 http://mirror-ubc.debian.org/debian/ jessie/main samtools amd64 0.1.19-1 [563 kB] Get:482 http://mirror-ubc.debian.org/debian/ jessie/main shared-mime-info amd64 1.3-1 [634 kB] Get:483 http://mirror-ubc.debian.org/debian/ jessie/main sim4 amd64 0.0.20121010-1 [49.8 kB] Get:484 http://mirror-ubc.debian.org/debian/ jessie/main ssl-cert all 1.0.35 [20.9 kB] Get:485 http://mirror-ubc.debian.org/debian/ jessie/main t-coffee amd64 11.00.8cbe486-1 [921 kB] Get:486 http://mirror-ubc.debian.org/debian/ jessie/main tigr-glimmer amd64 3.02-3 [276 kB] Get:487 http://mirror-ubc.debian.org/debian/ jessie/main tm-align amd64 20140601+dfsg-1 [49.7 kB] Get:488 http://mirror-ubc.debian.org/debian/ jessie/main wise-data all 2.4.1-17 [108 kB] Get:489 http://mirror-ubc.debian.org/debian/ jessie/main wise amd64 2.4.1-17 [961 kB] Get:490 http://mirror-ubc.debian.org/debian/ jessie/main xdg-user-dirs amd64 0.15-2 [52.1 kB] Get:491 http://mirror-ubc.debian.org/debian/ jessie/main bowtie amd64 1.1.1-2 [1369 kB] Get:492 http://mirror-ubc.debian.org/debian/ jessie/main libgd-perl amd64 2.53-1+b1 [180 kB] Get:493 http://mirror-ubc.debian.org/debian/ jessie/main libhwloc-plugins amd64 1.10.0-3 [15.2 kB] Get:494 http://mirror-ubc.debian.org/debian/ jessie/main libset-scalar-perl all 1.29-1 [35.3 kB] Get:495 http://mirror-ubc.debian.org/debian/ jessie/main lynx-cur amd64 2.8.9dev1-2+deb8u1 [1623 kB] Get:496 http://mirror-ubc.debian.org/debian/ jessie/main lynx all 2.8.9dev1-2+deb8u1 [232 kB] Get:497 http://mirror-ubc.debian.org/debian/ jessie/main ttf-liberation all 1.07.4-1 [9540 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 237 MB in 12s (18.8 MB/s) (Reading database ... 27671 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Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.19-18+deb8u10_amd64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.19-18+deb8u10) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. (Reading database ... 27674 files and directories currently installed.) Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.19-18+deb8u10_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.19-18+deb8u10) ... Installing new version of config file /etc/bindresvport.blacklist ... Installing new version of config file /etc/gai.conf ... dpkg: gcc-4.7-base:amd64: dependency problems, but removing anyway as you requested: libstdc++6:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgfortran3:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgcc1:amd64 depends on gcc-4.7-base (= 4.7.2-5). libquadmath0:amd64 depends on gcc-4.7-base (= 4.7.2-5). (Reading database ... 27664 files and directories currently installed.) Removing gcc-4.7-base:amd64 ... Selecting previously unselected package gcc-4.9-base:amd64. (Reading database ... 27655 files and directories currently installed.) Unpacking gcc-4.9-base:amd64 (from .../gcc-4.9-base_4.9.2-10+deb8u1_amd64.deb) ... Setting up gcc-4.9-base:amd64 (4.9.2-10+deb8u1) ... (Reading database ... 27664 files and directories currently installed.) Preparing to replace libstdc++6:amd64 4.7.2-5 (using .../libstdc++6_4.9.2-10+deb8u1_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.9.2-10+deb8u1) ... 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Preparing to unpack .../libdb5.3_5.3.28-9+deb8u1_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28-9+deb8u1) ... Setting up libdb5.3:amd64 (5.3.28-9+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 27644 files and directories currently installed.) Preparing to unpack .../iproute_1%3a3.16.0-2_all.deb ... Unpacking iproute (1:3.16.0-2) over (20120521-3+b3) ... dpkg: warning: unable to delete old directory '/etc/iproute2': Directory not empty Selecting previously unselected package iproute2. Preparing to unpack .../iproute2_3.16.0-2_amd64.deb ... Unpacking iproute2 (3.16.0-2) ... Preparing to unpack .../sysvinit-utils_2.88dsf-59_amd64.deb ... Unpacking sysvinit-utils (2.88dsf-59) over (2.88dsf-41+deb7u1) ... Selecting previously unselected package startpar. Preparing to unpack .../startpar_0.59-3_amd64.deb ... Unpacking startpar (0.59-3) ... Setting up startpar (0.59-3) ... Installing new version of config file /etc/init/startpar-bridge.conf ... 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Selecting previously unselected package libfile-slurp-tiny-perl. Preparing to unpack .../libfile-slurp-tiny-perl_0.003-1_all.deb ... Unpacking libfile-slurp-tiny-perl (0.003-1) ... Preparing to unpack .../libglib2.0-data_2.42.1-1_all.deb ... Unpacking libglib2.0-data (2.42.1-1) over (2.33.12+really2.32.4-5) ... Preparing to unpack .../libgraph-perl_1%3a0.96-1.1_all.deb ... Unpacking libgraph-perl (1:0.96-1.1) over (1:0.91-1) ... Preparing to unpack .../libipc-run-perl_0.92-1+deb8u1_all.deb ... Unpacking libipc-run-perl (0.92-1+deb8u1) over (0.92-1) ... Preparing to unpack .../libxml-twig-perl_1%3a3.48-1_all.deb ... Unpacking libxml-twig-perl (1:3.48-1) over (1:3.39-1) ... Preparing to unpack .../libgraphviz-perl_2.16-1_all.deb ... Unpacking libgraphviz-perl (2.16-1) over (2.10-1) ... Preparing to unpack .../libhtml-format-perl_2.11-1_all.deb ... Unpacking libhtml-format-perl (2.11-1) over (2.10-1) ... Selecting previously unselected package libhtml-tableextract-perl. 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Unpacking libmldbm-perl (2.05-1) over (2.04-1) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../libmodule-build-perl_0.421000-2+deb8u1_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.421000-2+deb8u1) ... Selecting previously unselected package libmodule-pluggable-perl. Preparing to unpack .../libmodule-pluggable-perl_5.1-1_all.deb ... Unpacking libmodule-pluggable-perl (5.1-1) ... Selecting previously unselected package libmodule-signature-perl. Preparing to unpack .../libmodule-signature-perl_0.73-1+deb8u2_all.deb ... Unpacking libmodule-signature-perl (0.73-1+deb8u2) ... Selecting previously unselected package libmultidimensional-perl. Preparing to unpack .../libmultidimensional-perl_0.010-1+b2_amd64.deb ... Unpacking libmultidimensional-perl (0.010-1+b2) ... Selecting previously unselected package libpackage-constants-perl. Preparing to unpack .../libpackage-constants-perl_0.04-1_all.deb ... Unpacking libpackage-constants-perl (0.04-1) ... Selecting previously unselected package libpam-cap:amd64. Preparing to unpack .../libpam-cap_1%3a2.24-8_amd64.deb ... Unpacking libpam-cap:amd64 (1:2.24-8) ... Preparing to unpack .../libpaper-utils_1.1.24+nmu4_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu4) over (1.1.24+nmu2) ... Selecting previously unselected package libpod-latex-perl. Preparing to unpack .../libpod-latex-perl_0.61-1_all.deb ... Adding 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Adding 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Unpacking libpod-latex-perl (0.61-1) ... Selecting previously unselected package libregexp-common-perl. 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Unpacking libspreadsheet-parseexcel-perl (0.6500-1) over (0.5800-1) ... Preparing to unpack .../libstatistics-descriptive-perl_3.0607-1_all.deb ... Unpacking libstatistics-descriptive-perl (3.0607-1) over (3.0603-1) ... Preparing to unpack .../libsvg-perl_2.59-1_all.deb ... Unpacking libsvg-perl (2.59-1) over (2.52-1) ... Selecting previously unselected package libterm-ui-perl. Preparing to unpack .../libterm-ui-perl_0.42-1_all.deb ... Unpacking libterm-ui-perl (0.42-1) ... Selecting previously unselected package libtext-soundex-perl. Preparing to unpack .../libtext-soundex-perl_3.4-1+b2_amd64.deb ... Unpacking libtext-soundex-perl (3.4-1+b2) ... Preparing to unpack .../libtie-ixhash-perl_1.23-1_all.deb ... Unpacking libtie-ixhash-perl (1.23-1) over (1.21-2) ... Preparing to unpack .../libtree-dagnode-perl_1.22-1_all.deb ... Unpacking libtree-dagnode-perl (1.22-1) over (1.06-1) ... Selecting previously unselected package libtype-tiny-xs-perl. 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Unpacking ncbi-blast+ (2.2.29-3) ... Preparing to unpack .../phyml_2%3a20120412-2_amd64.deb ... Unpacking phyml (2:20120412-2) over (2:20110919-1) ... Selecting previously unselected package poa. Preparing to unpack .../poa_2.0+20060928-3_amd64.deb ... Unpacking poa (2.0+20060928-3) ... Selecting previously unselected package prank. Preparing to unpack .../prank_0.0.140110-1_amd64.deb ... Unpacking prank (0.0.140110-1) ... Preparing to unpack .../primer3_2.3.6-1_amd64.deb ... Unpacking primer3 (2.3.6-1) over (2.2.3-1) ... Selecting previously unselected package probalign. Preparing to unpack .../probalign_1.4-3_amd64.deb ... Unpacking probalign (1.4-3) ... Selecting previously unselected package proda. Preparing to unpack .../archives/proda_1.0-8_amd64.deb ... Unpacking proda (1.0-8) ... Preparing to unpack .../psmisc_22.21-2_amd64.deb ... Unpacking psmisc (22.21-2) over (22.19-1+deb7u1) ... Selecting previously unselected package rename. 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Unpacking sim4 (0.0.20121010-1) over (0.0.20030921-3) ... Preparing to unpack .../ssl-cert_1.0.35_all.deb ... Unpacking ssl-cert (1.0.35) over (1.0.32+deb7u1) ... Preparing to unpack .../t-coffee_11.00.8cbe486-1_amd64.deb ... Unpacking t-coffee (11.00.8cbe486-1) over (9.02.r1228-2) ... Preparing to unpack .../tigr-glimmer_3.02-3_amd64.deb ... Unpacking tigr-glimmer (3.02-3) over (3.02-2) ... Preparing to unpack .../tm-align_20140601+dfsg-1_amd64.deb ... Unpacking tm-align (20140601+dfsg-1) over (20120507-1) ... Selecting previously unselected package wise-data. Preparing to unpack .../wise-data_2.4.1-17_all.deb ... Unpacking wise-data (2.4.1-17) ... Preparing to unpack .../wise_2.4.1-17_amd64.deb ... Unpacking wise (2.4.1-17) over (2.4.1-10) ... Selecting previously unselected package xdg-user-dirs. Preparing to unpack .../xdg-user-dirs_0.15-2_amd64.deb ... Unpacking xdg-user-dirs (0.15-2) ... Preparing to unpack .../bowtie_1.1.1-2_amd64.deb ... Unpacking bowtie (1.1.1-2) over (0.12.7-3) ... Selecting previously unselected package libgd-perl. Preparing to unpack .../libgd-perl_2.53-1+b1_amd64.deb ... Unpacking libgd-perl (2.53-1+b1) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../libhwloc-plugins_1.10.0-3_amd64.deb ... Unpacking libhwloc-plugins (1.10.0-3) ... Preparing to unpack .../libset-scalar-perl_1.29-1_all.deb ... Unpacking libset-scalar-perl (1.29-1) over (1.25-1) ... Preparing to unpack .../lynx-cur_2.8.9dev1-2+deb8u1_amd64.deb ... Unpacking lynx-cur (2.8.9dev1-2+deb8u1) over (2.8.8dev.12-2) ... Preparing to unpack .../lynx_2.8.9dev1-2+deb8u1_all.deb ... Unpacking lynx (2.8.9dev1-2+deb8u1) over (2.8.8dev.12-2) ... Preparing to unpack .../ttf-liberation_1.07.4-1_all.deb ... Unpacking ttf-liberation (1.07.4-1) over (1.07.2-6) ... Setting up libquadmath0:amd64 (4.9.2-10+deb8u1) ... Setting up libgfortran3:amd64 (4.9.2-10+deb8u1) ... Setting up libcdt5 (2.38.0-7) ... Setting up libcgraph6 (2.38.0-7) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up ucf (3.0030) ... Setting up fonts-dejavu-core (2.34-1) ... Setting up fonts-liberation (1.07.4-1) ... Setting up fontconfig-config (2.11.0-6.3+deb8u1) ... Installing new version of config file /etc/fonts/conf.d/README ... Installing new version of config file /etc/fonts/fonts.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-autohint.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-no-sub-pixel.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-sub-pixel-bgr.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-sub-pixel-rgb.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-sub-pixel-vbgr.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-sub-pixel-vrgb.conf ... Removing obsolete conffile /etc/fonts/conf.avail/10-unhinted.conf ... Removing obsolete conffile /etc/fonts/conf.avail/11-lcdfilter-default.conf ... Removing obsolete conffile /etc/fonts/conf.avail/11-lcdfilter-legacy.conf ... Removing obsolete conffile /etc/fonts/conf.avail/11-lcdfilter-light.conf ... Removing obsolete conffile /etc/fonts/conf.avail/20-fix-globaladvance.conf ... Removing obsolete conffile /etc/fonts/conf.avail/20-unhint-small-vera.conf ... Removing obsolete conffile /etc/fonts/conf.avail/25-unhint-nonlatin.conf ... Removing obsolete conffile /etc/fonts/conf.avail/30-metric-aliases.conf ... Removing obsolete conffile /etc/fonts/conf.avail/30-urw-aliases.conf ... Removing obsolete conffile /etc/fonts/conf.avail/40-nonlatin.conf ... Removing obsolete conffile /etc/fonts/conf.avail/45-latin.conf ... Removing obsolete conffile /etc/fonts/conf.avail/49-sansserif.conf ... Removing obsolete conffile /etc/fonts/conf.avail/50-user.conf ... Removing obsolete conffile /etc/fonts/conf.avail/51-local.conf ... Removing obsolete conffile /etc/fonts/conf.avail/60-latin.conf ... Removing obsolete conffile /etc/fonts/conf.avail/65-fonts-persian.conf ... Removing obsolete conffile /etc/fonts/conf.avail/65-khmer.conf ... Removing obsolete conffile /etc/fonts/conf.avail/65-nonlatin.conf ... Removing obsolete conffile /etc/fonts/conf.avail/69-unifont.conf ... Removing obsolete conffile /etc/fonts/conf.avail/70-force-bitmaps.conf ... Removing obsolete conffile /etc/fonts/conf.avail/70-no-bitmaps.conf ... Removing obsolete conffile /etc/fonts/conf.avail/70-yes-bitmaps.conf ... Removing obsolete conffile /etc/fonts/conf.avail/80-delicious.conf ... Removing obsolete conffile /etc/fonts/conf.avail/90-synthetic.conf ... Removing obsolete conffile /etc/fonts/fonts.dtd ... Setting up libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Setting up fontconfig (2.11.0-6.3+deb8u1) ... Regenerating fonts cache... done. Setting up iproute2 (3.16.0-2) ... Installing new version of config file /etc/iproute2/ematch_map ... Setting up iproute (1:3.16.0-2) ... Setting up netbase (5.3) ... Installing new version of config file /etc/protocols ... Installing new version of config file /etc/services ... Setting up ifupdown (0.7.53.1) ... Installing new version of config file /etc/init.d/networking ... Installing new version of config file /etc/init/network-interface-container.conf ... Installing new version of config file /etc/init/network-interface-security.conf ... Installing new version of config file /etc/init/network-interface.conf ... Installing new version of config file /etc/init/networking.conf ... Setting up proj-data (4.8.0-5) ... Setting up libproj0 (4.8.0-5) ... Setting up perl-modules (5.20.2-3+deb8u11) ... Setting up libgdbm3:amd64 (1.8.3-13.1) ... Setting up perl (5.20.2-3+deb8u11) ... Setting up libterm-readkey-perl (2.32-1+b1) ... Setting up libgsl0ldbl (1.16+dfsg-2) ... Setting up libjpeg62-turbo:amd64 (1:1.3.1-12) ... Setting up libhdf4-0-alt (4.2.10-3) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Setting up libvpx1:amd64 (1.3.0-3+deb8u1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Setting up libgd3:amd64 (2.1.0-5+deb8u11) ... Setting up pdl (1:2.007-4) ... Setting up perl-doc (5.20.2-3+deb8u11) ... Setting up libsocket-perl (2.016-1) ... Setting up libio-socket-ip-perl (0.32-1) ... Setting up libapr1:amd64 (1.5.1-3) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Checking for services that may need to be restarted...done. Checking for services that may need to be restarted...done. Setting up libaprutil1:amd64 (1.5.4-1) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-6) ... Setting up libnettle4:amd64 (2.7.1-5+deb8u2) ... Setting up libhogweed2:amd64 (2.7.1-5+deb8u2) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u3) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Setting up libaprutil1-ldap:amd64 (1.5.4-1) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Setting up liblua5.1-0:amd64 (5.1.5-7.1) ... Setting up apache2-utils (2.4.10-10+deb8u12) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Setting up apache2-bin (2.4.10-10+deb8u12) ... Setting up libperl5.20 (5.20.2-3+deb8u11) ... Setting up libdevel-symdump-perl (2.12-1) ... Setting up liburi-perl (1.64-1) ... Setting up openssl (1.0.1t-1+deb8u8) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 39 added, 36 removed; done. Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libnet-http-perl (6.07-1) ... Setting up mime-support (3.58) ... Installing new version of config file /etc/mime.types ... Setting up apache2-data (2.4.10-10+deb8u12) ... Setting up apache2 (2.4.10-10+deb8u12) ... Installing new version of config file /etc/apache2/apache2.conf ... Installing new version of config file /etc/apache2/envvars ... Installing new version of config file /etc/apache2/mods-available/actions.conf ... Installing new version of config file /etc/apache2/mods-available/alias.conf ... Installing new version of config file /etc/apache2/mods-available/asis.load ... Installing new version of config file /etc/apache2/mods-available/auth_basic.load ... Installing new version of config file /etc/apache2/mods-available/auth_digest.load ... Installing new version of config file /etc/apache2/mods-available/authz_dbm.load ... Installing new version of config file /etc/apache2/mods-available/authz_groupfile.load ... Installing new version of config file /etc/apache2/mods-available/authz_host.load ... Installing new version of config file /etc/apache2/mods-available/authz_user.load ... Installing new version of config file /etc/apache2/mods-available/autoindex.conf ... Installing new version of config file /etc/apache2/mods-available/cgid.conf ... Installing new version of config file /etc/apache2/mods-available/dav_fs.conf ... Installing new version of config file /etc/apache2/mods-available/deflate.conf ... Installing new version of config file /etc/apache2/mods-available/deflate.load ... Installing new version of config file /etc/apache2/mods-available/dir.conf ... Installing new version of config file /etc/apache2/mods-available/include.load ... Installing new version of config file /etc/apache2/mods-available/info.conf ... Installing new version of config file /etc/apache2/mods-available/ldap.conf ... Installing new version of config file /etc/apache2/mods-available/mime.conf ... Installing new version of config file /etc/apache2/mods-available/mime_magic.conf ... Installing new version of config file /etc/apache2/mods-available/negotiation.conf ... Installing new version of config file /etc/apache2/mods-available/proxy.conf ... Installing new version of config file /etc/apache2/mods-available/proxy_balancer.conf ... Installing new version of config file /etc/apache2/mods-available/proxy_balancer.load ... Installing new version of config file /etc/apache2/mods-available/proxy_ftp.conf ... Installing new version of config file /etc/apache2/mods-available/reqtimeout.conf ... Installing new version of config file /etc/apache2/mods-available/setenvif.conf ... Installing new version of config file /etc/apache2/mods-available/ssl.conf ... Installing new version of config file /etc/apache2/mods-available/ssl.load ... Installing new version of config file /etc/apache2/mods-available/status.conf ... Installing new version of config file /etc/apache2/mods-available/userdir.conf ... Installing new version of config file /etc/apache2/ports.conf ... Installing new version of config file /etc/cron.daily/apache2 ... Installing new version of config file /etc/default/apache2 ... Installing new version of config file /etc/init.d/apache2 ... Installing new version of config file /etc/logrotate.d/apache2 ... Removing obsolete conffile /etc/apache2/mods-available/authz_default.load ... Removing obsolete conffile /etc/apache2/mods-available/authn_default.load ... Removing obsolete conffile /etc/apache2/mods-available/mem_cache.load ... Removing obsolete conffile /etc/apache2/mods-available/mem_cache.conf ... Removing obsolete conffile /etc/apache2/mods-available/authn_alias.load ... Removing obsolete conffile /etc/apache2/mods-available/cern_meta.load ... Removing obsolete conffile /etc/apache2/mods-available/disk_cache.load ... Removing obsolete conffile /etc/apache2/mods-available/disk_cache.conf ... Removing obsolete conffile /etc/apache2/mods-available/imagemap.load ... Removing obsolete directory /etc/apache2/conf.d Enabling module mpm_worker. Enabling module authn_core. disable obsolete module authz_default Enabling module authz_core. Enabling module filter. Enabling module access_compat. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. invoke-rc.d: policy-rc.d denied execution of restart. Setting up apache2.2-common (2.4.10-10+deb8u12) ... Setting up apache2-mpm-worker (2.4.10-10+deb8u12) ... Setting up apache2.2-bin (2.4.10-10+deb8u12) ... Setting up libtext-charwidth-perl (0.04-7+b3) ... Setting up libpackage-stash-xs-perl (0.28-2+b1) ... Setting up liblist-moreutils-perl (0.33-2+b1) ... Setting up libclone-perl (0.37-1+b1) ... Setting up libbit-vector-perl (7.3-1+b2) ... Setting up libdate-calc-perl (6.3-2) ... Setting up libdate-calc-xs-perl (6.3-2) ... Setting up libparams-util-perl (1.07-2+b1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libdata-optlist-perl (0.109-1) ... Setting up libparams-classify-perl (0.013-4+b2) ... Setting up libmodule-runtime-perl (0.014-1) ... Setting up libtry-tiny-perl (0.22-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libsub-exporter-progressive-perl (0.001011-1) ... Setting up libvariable-magic-perl (0.55-1) ... Setting up libb-hooks-endofscope-perl (0.13-1) ... Setting up libpackage-stash-perl (0.37-1) ... Setting up libsub-identify-perl (0.08-1) ... Setting up libsub-name-perl (0.12-1) ... Setting up libnamespace-clean-perl (0.25-1) ... Setting up libclass-load-perl (0.22-1) ... Setting up libclass-load-xs-perl (0.08-1+b1) ... Setting up libio-pty-perl (1:1.08-1+b4) ... Setting up libipc-sharelite-perl (0.17-3+b2) ... Setting up libdbi-perl (1.631-3+b1) ... Setting up libdbd-sqlite3-perl (1.44-1) ... Setting up libbsd-resource-perl (1.2907-1+b2) ... Setting up liblocale-gettext-perl (1.05-8+b1) ... Setting up libterm-readline-gnu-perl (1.24-2+b1) ... Setting up libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxslt-perl (1.92-1+b1) ... Setting up libalgorithm-diff-perl (1.19.02-3) ... Setting up libalgorithm-diff-xs-perl (0.04-3+b1) ... Setting up ttf-dejavu-core (2.34-1) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up perl-tk (1:804.032-3+b3) ... Setting up mysql-common (5.5.60-0+deb8u1) ... Installing new version of config file /etc/mysql/my.cnf ... Setting up libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Setting up libdbd-mysql-perl (4.028-2+deb8u2) ... Setting up libyaml-syck-perl (1.27-2+b2) ... Setting up libtext-iconv-perl (1.7-5+b2) ... Setting up libcrypt-ssleay-perl (0.58-1+b2) ... Setting up libkeyutils1:amd64 (1.5.9-5+b1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libpq5:amd64 (9.4.18-0+deb8u1) ... Setting up libdbd-pg-perl (3.4.2-1) ... Setting up libclass-c3-xs-perl (0.13-2+b1) ... Setting up libconvert-binary-c-perl (0.76-3+b2) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b1) ... Setting up libdrm2:amd64 (2.4.58-2) ... Setting up libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Setting up libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-dri2-0:amd64 (1.10-3+b1) ... Setting up libxcb-dri3-0:amd64 (1.10-3+b1) ... Setting up libxcb-glx0:amd64 (1.10-3+b1) ... Setting up libxcb-present0:amd64 (1.10-3+b1) ... Setting up libxcb-sync1:amd64 (1.10-3+b1) ... Setting up libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxshmfence1:amd64 (1.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Setting up libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Setting up libxi6:amd64 (2:1.7.4-1+deb8u1) ... Setting up freeglut3:amd64 (2.8.1-2) ... Setting up libglu1-mesa:amd64 (9.0.0-2) ... Setting up libopengl-perl (0.6703+dfsg-1+b1) ... Setting up libunicode-map-perl (0.112-11+b1) ... Setting up liberror-perl (0.17-1.1) ... Setting up libcache-cache-perl (1.07-2) ... Setting up libace-perl (1.92-3+b1) ... Setting up libfcgi-perl (0.77-1+deb8u1) ... Setting up libio-string-perl (1.08-3) ... Setting up libdata-stag-perl (0.13-1) ... Setting up libbio-perl-perl (1.6.924-1) ... Setting up bioperl (1.6.924-1) ... Setting up libdevel-stacktrace-perl (1.3400-1) ... Setting up libdist-checkconflicts-perl (0.11-1) ... Setting up libmodule-runtime-conflicts-perl (0.001-1) ... Setting up libdevel-globaldestruction-perl (0.13-1) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up libeval-closure-perl (0.11-1) ... Setting up libalgorithm-c3-perl (0.09-1) ... Setting up libclass-c3-perl (0.26-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up libmoose-perl (2.1213-1) ... Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libclass-inspector-perl (1.28-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libconvert-binhex-perl (1.123-2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libnet-smtp-ssl-perl (1.01-3) ... Setting up libmailtools-perl (2.13-1) ... Setting up libmime-tools-perl (5.505-1) ... Setting up libpciaccess0:amd64 (0.13.2-3+b1) ... Setting up libdrm-intel1:amd64 (2.4.58-2) ... Setting up libdrm-nouveau2:amd64 (2.4.58-2) ... Setting up libdrm-radeon1:amd64 (2.4.58-2) ... Setting up libelf1:amd64 (0.159-4.2) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libedit2:amd64 (3.1-20140620-2) ... Setting up libllvm3.5:amd64 (1:3.5-10) ... Setting up libgl1-mesa-dri:amd64 (10.3.2-1+deb8u1) ... Installing new version of config file /etc/drirc ... Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxcb-render0:amd64 (1.10-3+b1) ... Setting up libxcb-shm0:amd64 (1.10-3+b1) ... Setting up libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Setting up libglib2.0-0:amd64 (2.42.1-1+b1) ... No schema files found: doing nothing. Setting up libltdl7:amd64 (2.4.2-1.11+b1) ... Setting up libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Setting up libharfbuzz0b:amd64 (0.9.35-2) ... Setting up libthai-data (0.1.21-1) ... Setting up libdatrie1:amd64 (0.2.8-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up libpango-1.0-0:amd64 (1.36.8-3) ... Setting up libpangoft2-1.0-0:amd64 (1.36.8-3) ... Setting up libpangocairo-1.0-0:amd64 (1.36.8-3) ... Setting up libpangox-1.0-0:amd64 (0.0.2-5) ... Setting up libpangoxft-1.0-0:amd64 (1.36.8-3) ... Setting up libpango1.0-0:amd64 (1.36.8-3) ... Setting up libpathplan4 (2.38.0-7) ... Setting up libxdot4 (2.38.0-7) ... Setting up libgvc6 (2.38.0-7) ... Setting up libgvpr2 (2.38.0-7) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libxaw7:amd64 (2:1.0.12-2+b1) ... Setting up graphviz (2.38.0-7) ... Setting up libnuma1:amd64 (2.0.10-1) ... Setting up libhwloc5:amd64 (1.10.0-3) ... Setting up libcr0 (0.8.5-2.2) ... Setting up libibverbs1 (1.1.8-1.1) ... Setting up libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Setting up fftw2 (2.1.5-1+b1) ... Setting up libgpm2:amd64 (1.20.4-6.1+b2) ... Setting up libidn11:amd64 (1.29-1+deb8u2) ... Setting up libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Setting up file (1:5.22+15-2+deb8u4) ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7 (2.7.9-2+deb8u1) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up fonts-droid (1:4.4.4r2-6) ... Removing obsolete conffile /etc/fonts/conf.avail/65-droid-sans-fonts.conf ... Setting up libavahi-common-data:amd64 (0.6.31-5) ... Setting up libavahi-common3:amd64 (0.6.31-5) ... Setting up libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Setting up libavahi-client3:amd64 (0.6.31-5) ... Setting up libcap-ng0:amd64 (0.7.4-2) ... Setting up libqhull6:amd64 (2012.1-5) ... Setting up libcsiro0:amd64 (5.10.0+dfsg-1) ... Setting up libcups2:amd64 (1.7.5-11+deb8u2) ... Setting up libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libgomp1:amd64 (4.9.2-10+deb8u1) ... Setting up libijs-0.35:amd64 (0.35-10) ... Setting up libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Setting up liblcms2-2:amd64 (2.6-3+deb8u1) ... Setting up ncbi-data (6.1.20120620-8) ... Setting up libncbi6:amd64 (6.1.20120620-8) ... Setting up dbus (1.8.22-0+deb8u1) ... Installing new version of config file /etc/dbus-1/session.conf ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libpam-systemd:amd64 (215-17+deb8u7) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Setting up libqsastime0:amd64 (5.10.0+dfsg-1) ... Setting up libyaml-0-2:amd64 (0.1.6-3) ... Setting up poppler-data (0.4.7-1) ... Installing new version of config file /etc/ghostscript/cidfmap.d/90gs-cjk-resource-korea1.conf ... Setting up libsystemd-login0:amd64 (215-17+deb8u7) ... Setting up libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libtxc_dxtn_s2tc.so.0 to provide /usr/lib/x86_64-linux-gnu/libtxc_dxtn.so (libtxc-dxtn-x86_64-linux-gnu) in auto mode Setting up ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... Setting up isc-dhcp-common (4.3.1-6+deb8u3) ... Setting up isc-dhcp-client (4.3.1-6+deb8u3) ... Setting up libxtables10 (1.4.21-2+b1) ... Setting up debconf-i18n (1.5.56+deb8u1) ... Setting up krb5-locales (1.12.1+dfsg-19+deb8u4) ... Setting up libclass-isa-perl (0.36-5) ... Setting up libswitch-perl (2.17-2) ... Setting up xz-utils (5.1.1alpha+20120614-2+b3) ... Setting up amap-align (2.2-4) ... Setting up bedtools (2.21.0-1) ... Setting up libbio-perl-run-perl (1.6.9-2) ... Setting up bioperl-run (1.6.9-2) ... Setting up blast2 (1:2.2.26.20120620-8) ... Setting up bwa (0.7.10-1) ... Setting up libargtable2-0 (12-1.1) ... Setting up clustalo (1.2.1-1) ... Setting up clustalw (2.1+lgpl-4) ... Setting up dialign (2.2.1-7) ... Setting up dialign-tx-data (1.0.2-7) ... Setting up dialign-tx (1.0.2-7) ... Setting up libhpdf-2.2.1 (2.2.1-1.1) ... Setting up emboss-lib (6.6.0+dfsg-1) ... Setting up emboss-data (6.6.0+dfsg-1) ... Setting up emboss (6.6.0+dfsg-1) ... Setting up libjbig2dec0 (0.13-4~deb8u2) ... Setting up libgs9-common (9.06~dfsg-2+deb8u7) ... Setting up hmmer (3.1b1-3) ... Setting up infernal (1.1.1-2) ... Setting up javascript-common (11) ... apache2_invoke: Enable configuration javascript-common invoke-rc.d: policy-rc.d denied execution of reload. Setting up libarchive-extract-perl (0.72-1) ... Setting up libclass-method-modifiers-perl (2.11-1) ... Setting up libimport-into-perl (1.002004-1) ... Setting up librole-tiny-perl (1.003004-1) ... Setting up libstrictures-perl (1.005005-1) ... Setting up libmoo-perl (1.006001-1) ... Setting up libexporter-tiny-perl (0.038-2) ... Setting up libtype-tiny-perl (1.000004-1) ... Setting up libarray-compare-perl (2.11-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libb-hooks-op-check-perl (0.19-2+b1) ... Setting up liblexical-sealrequirehints-perl (0.007-1+b2) ... Setting up libbareword-filehandles-perl (0.003-1+b2) ... Setting up libbio-asn1-entrezgene-perl (1.700-1) ... Setting up libcgi-pm-perl (4.09-1) ... Setting up libcgi-fast-perl (1:2.04-1) ... Setting up libclass-tiny-perl (1.000-1) ... Setting up libclass-xsaccessor-perl (1.19-2+b4) ... Setting up libcpan-meta-perl (2.142690-1) ... Setting up libcrypt-rc4-perl (2.02-2) ... Setting up libdata-section-perl (0.200006-1) ... Setting up libdate-manip-perl (6.47-1) ... Setting up libpadwalker-perl (1.98-1+b1) ... Setting up libdevel-caller-perl (2.06-1+b2) ... Setting up libdevel-lexalias-perl (0.05-1+b2) ... Setting up libdevel-partialdump-perl (0.17-1) ... Setting up libdigest-perl-md5-perl (1.9-1) ... Setting up libfile-slurp-tiny-perl (0.003-1) ... Setting up libglib2.0-data (2.42.1-1) ... Setting up libgraph-perl (1:0.96-1.1) ... Setting up libipc-run-perl (0.92-1+deb8u1) ... Setting up libhtml-format-perl (2.11-1) ... Setting up libhtml-tableextract-perl (2.11-1) ... Setting up libindirect-perl (0.33-1) ... Setting up libjs-jquery (1.7.2+dfsg-3.2) ... Setting up liblog-message-perl (0.8-1) ... Setting up liblog-message-simple-perl (0.10-2) ... Setting up libmath-spline-perl (0.02-1) ... Setting up libmldbm-perl (2.05-1) ... Setting up libmodule-build-perl (0.421000-2+deb8u1) ... Setting up libmodule-pluggable-perl (5.1-1) ... Setting up libmodule-signature-perl (0.73-1+deb8u2) ... Setting up libmultidimensional-perl (0.010-1+b2) ... Setting up libpackage-constants-perl (0.04-1) ... Setting up libpam-cap:amd64 (1:2.24-8) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libpod-latex-perl (0.61-1) ... Setting up libregexp-common-perl (2013031301-1) ... Setting up libpod-readme-perl (0.11-1) ... Setting up libtext-template-perl (1.46-1) ... Setting up libsoftware-license-perl (0.103010-3) ... Setting up libsort-naturally-perl (1.03-1) ... Setting up libspreadsheet-writeexcel-perl (2.40-1) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1) ... Setting up libstatistics-descriptive-perl (3.0607-1) ... Setting up libsvg-perl (2.59-1) ... Setting up libterm-ui-perl (0.42-1) ... Setting up libtext-soundex-perl (3.4-1+b2) ... Setting up libtie-ixhash-perl (1.23-1) ... Setting up libtree-dagnode-perl (1.22-1) ... Setting up libtype-tiny-xs-perl (0.010-1) ... Setting up libxml-sax-writer-perl (0.54-1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libyaml-perl (1.13-1) ... Setting up mafft (7.205-1) ... Setting up mustang (3.2.2-1) ... Setting up ncbi-blast+ (2.2.29-3) ... Setting up phyml (2:20120412-2) ... Setting up poa (2.0+20060928-3) ... Setting up prank (0.0.140110-1) ... Setting up primer3 (2.3.6-1) ... Setting up probalign (1.4-3) ... Setting up proda (1.0-8) ... Setting up psmisc (22.21-2) ... Setting up rename (0.20-3) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up rubygems-integration (1.8) ... Setting up libruby2.1:amd64 (2.1.5-2+deb8u3) ... Setting up ruby2.1 (2.1.5-2+deb8u3) ... Setting up ruby (1:2.1.5+deb8u2) ... Setting up samtools (0.1.19-1) ... Setting up shared-mime-info (1.3-1) ... Setting up sim4 (0.0.20121010-1) ... Setting up ssl-cert (1.0.35) ... Setting up t-coffee (11.00.8cbe486-1) ... Setting up tigr-glimmer (3.02-3) ... Setting up tm-align (20140601+dfsg-1) ... Setting up wise-data (2.4.1-17) ... Setting up wise (2.4.1-17) ... Setting up xdg-user-dirs (0.15-2) ... Setting up bowtie (1.1.1-2) ... Setting up libgd-perl (2.53-1+b1) ... Setting up libhwloc-plugins (1.10.0-3) ... Setting up libset-scalar-perl (1.29-1) ... Setting up lynx-cur (2.8.9dev1-2+deb8u1) ... Installing new version of config file /etc/lynx-cur/lynx.cfg ... Setting up lynx (2.8.9dev1-2+deb8u1) ... Setting up ttf-liberation (1.07.4-1) ... Setting up libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Setting up libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Setting up libgs9 (9.06~dfsg-2+deb8u7) ... Setting up ghostscript (9.06~dfsg-2+deb8u7) ... Setting up libwww-perl (6.08-1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... apache2_invoke perl: already enabled invoke-rc.d: policy-rc.d denied execution of restart. Setting up libapache2-reload-perl (0.12-3) ... Setting up libtfbs-perl (0.6.1+dfsg-1+b1) ... Setting up libxml-parser-perl (2.41-3) ... Setting up libsoap-lite-perl (1.11-1) ... Setting up libapache-dbi-perl (1.12-1) ... Setting up libxml-twig-perl (1:3.48-1) ... Setting up libgraphviz-perl (2.16-1) ... Setting up libxmlrpc-lite-perl (0.717-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. 4m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', '-yf', 'dist-upgrade'] 4m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 4m33.8s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 4m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 4m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 4m33.8s DUMP: Package: libtfbs-perl Source: libtfbs-perl (0.6.1+dfsg-1) Version: 0.6.1+dfsg-1+b1 Installed-Size: 720 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.20.0-4), perlapi-5.20.0, libc6 (>= 2.14), pdl, bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description-en: scanning DNA sequence with a position weight matrix The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences. . If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136". Description-md5: 09989d886916236509d34feced92018d Homepage: http://tfbs.genereg.net Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, role::devel-lib Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.6.1+dfsg-1+b1_amd64.deb Size: 233510 MD5sum: c468df37a477f4d1431542623e00ce16 SHA1: 892679ae52b122c5534da12151e28cf9e238823f SHA256: b5f53c9c7d1bc7cdf40f8b76bd264cb142de6fbafbfbb30ca9cec5dbd39fbbe6 4m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 4m33.8s INFO: apt-cache knows about the following packages: libtfbs-perl 4m33.8s INFO: Running scripts pre_install 4m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_database-server'] 4m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_database-server'] 4m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_exceptions'] 4m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_exceptions'] 4m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_extras'] 4m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_extras'] 4m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_foreign_architecture'] 4m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_foreign_architecture'] 4m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'policy'] 4m33.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ jessie/main Translation-en 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 4m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'policy'] 4m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'policy', 'libtfbs-perl'] 4m33.9s DUMP: libtfbs-perl: Installed: 0.6.1+dfsg-1+b1 Candidate: 0.6.1+dfsg-1+b1 Version table: *** 0.6.1+dfsg-1+b1 0 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 4m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'policy', 'libtfbs-perl'] 4m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', '-y', 'install', 'libtfbs-perl'] 4m34.3s DUMP: Reading package lists... Building dependency tree... Reading state information... libtfbs-perl is already the newest version. The following packages were automatically installed and are no longer required: apache2.2-bin apache2.2-common fftw2 libb-hooks-endofscope-perl libcdt4 libcgraph5 libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclass-tiny-perl libcsiro0 libdevel-partialdump-perl libdist-checkconflicts-perl libdrm-nouveau1a libeval-closure-perl libffi5 libgcrypt11 libgd2-xpm libgnutls26 libgraph4 libgvpr1 libjpeg8 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmoose-perl libnamespace-clean-perl libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango1.0-0 libplplot11 libprocps0 libqhull5 libqhull6 libqsastime0 libruby1.9.1 libsub-identify-perl libswitch-perl libsystemd-login0 libtasn1-3 libtiff4 libtorque2 libtry-tiny-perl libvariable-magic-perl ruby1.9.1 ttf-dejavu-core ttf-liberation Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', '-y', 'install', 'libtfbs-perl'] 4m34.3s INFO: Running scripts post_install 4m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_install_exceptions'] 4m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_install_exceptions'] 4m34.3s INFO: Running scripts post_distupgrade 4m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_distupgrade_base_cleanup'] 4m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_distupgrade_base_cleanup'] 4m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_distupgrade_exceptions'] 4m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_distupgrade_exceptions'] 4m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 4m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 4m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_distupgrade_squeeze-backports'] 4m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_distupgrade_squeeze-backports'] 4m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_distupgrade_zz_backports'] 4m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_distupgrade_zz_backports'] 4m34.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 4m36.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 4m36.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 4m38.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 4m38.2s INFO: Running scripts pre_install 4m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_database-server'] 4m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_database-server'] 4m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_exceptions'] 4m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_exceptions'] 4m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_extras'] 4m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_extras'] 4m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_foreign_architecture'] 4m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_foreign_architecture'] 4m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'policy'] 4m38.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ jessie/main Translation-en 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 4m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'policy'] 4m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'policy', 'libtfbs-perl'] 4m38.3s DUMP: libtfbs-perl: Installed: 0.6.1+dfsg-1+b1 Candidate: 0.6.1+dfsg-1+b1 Version table: *** 0.6.1+dfsg-1+b1 0 500 http://mirror-ubc.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 4m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-cache', 'policy', 'libtfbs-perl'] 4m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', '-y', 'install', 'libtfbs-perl=0.6.1+dfsg-1+b1'] 4m38.7s DUMP: Reading package lists... Building dependency tree... Reading state information... libtfbs-perl is already the newest version. The following packages were automatically installed and are no longer required: apache2.2-bin apache2.2-common fftw2 libb-hooks-endofscope-perl libcdt4 libcgraph5 libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclass-tiny-perl libcsiro0 libdevel-partialdump-perl libdist-checkconflicts-perl libdrm-nouveau1a libeval-closure-perl libffi5 libgcrypt11 libgd2-xpm libgnutls26 libgraph4 libgvpr1 libjpeg8 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmoose-perl libnamespace-clean-perl libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango1.0-0 libplplot11 libprocps0 libqhull5 libqhull6 libqsastime0 libruby1.9.1 libsub-identify-perl libswitch-perl libsystemd-login0 libtasn1-3 libtiff4 libtorque2 libtry-tiny-perl libvariable-magic-perl ruby1.9.1 ttf-dejavu-core ttf-liberation Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', '-y', 'install', 'libtfbs-perl=0.6.1+dfsg-1+b1'] 4m38.7s INFO: Running scripts post_install 4m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_install_exceptions'] 4m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_install_exceptions'] 4m38.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 4m40.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 4m40.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 4m40.7s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed amap-align amap-align 2.2-4 install ok installed apache2 apache2 2.4.10-10+deb8u12 install ok installed apache2-bin apache2-bin 2.4.10-10+deb8u12 install ok installed apache2-data apache2-data 2.4.10-10+deb8u12 install ok installed apache2-mpm-worker apache2-mpm-worker 2.4.10-10+deb8u12 install ok installed apache2-utils apache2-utils 2.4.10-10+deb8u12 install ok installed apache2.2-bin apache2.2-bin 2.4.10-10+deb8u12 install ok installed apache2.2-common apache2.2-common 2.4.10-10+deb8u12 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bedtools bedtools 2.21.0-1 install ok installed bioperl bioperl 1.6.924-1 install ok installed bioperl-run bioperl-run 1.6.9-2 install ok installed blast2 blast2 1:2.2.26.20120620-8 install ok installed bowtie bowtie 1.1.1-2 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed bwa bwa 0.7.10-1 install ok installed ca-certificates ca-certificates 20141019+deb8u3 install ok installed clustalo clustalo 1.2.1-1 install ok installed clustalw clustalw 2.1+lgpl-4 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed dbus dbus 1.8.22-0+deb8u1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed dialign dialign 2.2.1-7 install ok installed dialign-tx dialign-tx 1.0.2-7 install ok installed dialign-tx-data dialign-tx-data 1.0.2-7 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed emboss emboss 6.6.0+dfsg-1 install ok installed emboss-data emboss-data 6.6.0+dfsg-1 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-1 install ok installed exonerate exonerate 2.2.0-6 install ok installed fftw2 fftw2 2.1.5-1+b1 install ok installed file file 1:5.22+15-2+deb8u4 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fontconfig fontconfig 2.11.0-6.3+deb8u1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed fonts-droid fonts-droid 1:4.4.4r2-6 install ok installed fonts-liberation fonts-liberation 1.07.4-1 install ok installed freeglut3:amd64 freeglut3 2.8.1-2 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed ghostscript ghostscript 9.06~dfsg-2+deb8u7 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed graphviz graphviz 2.38.0-7 install ok installed grep grep 2.20-4.1 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.2 install ok installed gzip gzip 1.6-4 install ok installed hmmer hmmer 3.1b1-3 install ok installed hostname hostname 3.15 install ok installed ifupdown ifupdown 0.7.53.1 install ok installed infernal infernal 1.1.1-2 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed iproute iproute 1:3.16.0-2 install ok installed iproute2 iproute2 3.16.0-2 install ok installed isc-dhcp-client isc-dhcp-client 4.3.1-6+deb8u3 install ok installed isc-dhcp-common isc-dhcp-common 4.3.1-6+deb8u3 install ok installed javascript-common javascript-common 11 install ok installed kalign kalign 1:2.03+20110620-2 install ok installed krb5-locales krb5-locales 1.12.1+dfsg-19+deb8u4 install ok installed libace-perl libace-perl 1.92-3+b1 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.09-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.02-3 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-3+b1 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-2 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-1 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.9~1624218-2+deb8u2 install ok installed libapache2-reload-perl libapache2-reload-perl 0.12-3 install ok installed libapr1:amd64 libapr1 1.5.1-3 install ok installed libaprutil1:amd64 libaprutil1 1.5.4-1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.5.4-1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.5.4-1 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libarchive-extract-perl libarchive-extract-perl 0.72-1 install ok installed libargtable2-0 libargtable2-0 12-1.1 install ok installed libarray-compare-perl libarray-compare-perl 2.11-1 install ok installed libatm1:amd64 libatm1 1:2.5.1-1.5 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.31-5 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.31-5 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.31-5 install ok installed libb-hooks-endofscope-perl libb-hooks-endofscope-perl 0.13-1 install ok installed libb-hooks-op-check-perl libb-hooks-op-check-perl 0.19-2+b1 install ok installed libbareword-filehandles-perl libbareword-filehandles-perl 0.003-1+b2 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.700-1 install ok installed libbio-perl-perl libbio-perl-perl 1.6.924-1 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.6.9-2 install ok installed libbit-vector-perl libbit-vector-perl 7.3-1+b2 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2907-1+b2 install ok installed libbsd0:amd64 libbsd0 0.7.0-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcache-cache-perl libcache-cache-perl 1.07-2 install ok installed libcairo2:amd64 libcairo2 1.14.0-2.1+deb8u2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.4-2 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcarp-clan-perl libcarp-clan-perl 6.04-1 install ok installed libcdt4 libcdt4 2.26.3-14+deb7u2 install ok installed libcdt5 libcdt5 2.38.0-7 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.04-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.09-1 install ok installed libcgraph5 libcgraph5 2.26.3-14+deb7u2 install ok installed libcgraph6 libcgraph6 2.38.0-7 install ok installed libclass-c3-perl libclass-c3-perl 0.26-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.13-2+b1 install ok installed libclass-inspector-perl libclass-inspector-perl 1.28-1 install ok installed libclass-isa-perl libclass-isa-perl 0.36-5 install ok installed libclass-load-perl libclass-load-perl 0.22-1 install ok installed libclass-load-xs-perl libclass-load-xs-perl 0.08-1+b1 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.11-1 install ok installed libclass-tiny-perl libclass-tiny-perl 1.000-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-2+b4 install ok installed libclone-perl libclone-perl 0.37-1+b1 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.76-3+b2 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.123-2 install ok installed libcpan-meta-perl libcpan-meta-perl 2.142690-1 install ok installed libcr0 libcr0 0.8.5-2.2 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-2 install ok installed libcrypt-ssleay-perl libcrypt-ssleay-perl 0.58-1+b2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libcsiro0:amd64 libcsiro0 5.10.0+dfsg-1 install ok installed libcups2:amd64 libcups2 1.7.5-11+deb8u2 install ok installed libcupsfilters1:amd64 libcupsfilters1 1.0.61-5+deb8u3 install ok installed libcupsimage2:amd64 libcupsimage2 1.7.5-11+deb8u2 install ok installed libdata-optlist-perl libdata-optlist-perl 0.109-1 install ok installed libdata-section-perl libdata-section-perl 0.200006-1 install ok installed libdata-stag-perl libdata-stag-perl 0.13-1 install ok installed libdate-calc-perl libdate-calc-perl 6.3-2 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.3-2 install ok installed libdate-manip-perl libdate-manip-perl 6.47-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.8-1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdbd-mysql-perl libdbd-mysql-perl 4.028-2+deb8u2 install ok installed libdbd-pg-perl libdbd-pg-perl 3.4.2-1 install ok installed libdbd-sqlite3-perl libdbd-sqlite3-perl 1.44-1 install ok installed libdbi-perl libdbi-perl 1.631-3+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.8.22-0+deb8u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevel-caller-perl libdevel-caller-perl 2.06-1+b2 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.13-1 install ok installed libdevel-lexalias-perl libdevel-lexalias-perl 0.05-1+b2 install ok installed libdevel-partialdump-perl libdevel-partialdump-perl 0.17-1 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 1.3400-1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.12-1 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1 install ok installed libdist-checkconflicts-perl libdist-checkconflicts-perl 0.11-1 install ok installed libdns-export100 libdns-export100 1:9.9.5.dfsg-9+deb8u15 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.58-2 install ok installed libdrm-nouveau1a:amd64 libdrm-nouveau1a 2.4.40-1~deb7u2 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.58-2 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.58-2 install ok installed libdrm2:amd64 libdrm2 2.4.58-2 install ok installed libedit2:amd64 libedit2 3.1-20140620-2 install ok installed libelf1:amd64 libelf1 0.159-4.2 install ok installed libencode-locale-perl libencode-locale-perl 1.03-1 install ok installed liberror-perl liberror-perl 0.17-1.1 install ok installed libeval-closure-perl libeval-closure-perl 0.11-1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u4 install ok installed libexporter-tiny-perl libexporter-tiny-perl 0.038-2 install ok installed libfcgi-perl libfcgi-perl 0.77-1+deb8u1 install ok installed libffi5:amd64 libffi5 3.0.10-3 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.003-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u2 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt11:amd64 libgcrypt11 1.5.0-5+deb7u4 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgd-perl libgd-perl 2.53-1+b1 install ok installed libgd2-xpm:amd64 libgd2-xpm 2.0.36~rc1~dfsg-6.1+deb7u2 install ok installed libgd3:amd64 libgd3 2.1.0-5+deb8u11 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-13.1 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 10.3.2-1+deb8u1 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 10.3.2-1+deb8u1 install ok installed libglapi-mesa:amd64 libglapi-mesa 10.3.2-1+deb8u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.42.1-1+b1 install ok installed libglib2.0-data libglib2.0-data 2.42.1-1 install ok installed libglu1-mesa:amd64 libglu1-mesa 9.0.0-2 install ok installed libgmp10:amd64 libgmp10 2:6.0.0+dfsg-6 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgnutls26:amd64 libgnutls26 2.12.20-8+deb7u5 install ok installed libgomp1:amd64 libgomp1 4.9.2-10+deb8u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libgpm2:amd64 libgpm2 1.20.4-6.1+b2 install ok installed libgraph-perl libgraph-perl 1:0.96-1.1 install ok installed libgraph4 libgraph4 2.26.3-14+deb7u2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1~deb8u1 install ok installed libgraphviz-perl libgraphviz-perl 2.16-1 install ok installed libgs9 libgs9 9.06~dfsg-2+deb8u7 install ok installed libgs9-common libgs9-common 9.06~dfsg-2+deb8u7 install ok installed libgsl0ldbl libgsl0ldbl 1.16+dfsg-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.12.1+dfsg-19+deb8u4 deinstall ok config-files libgvc5 libgvc5 2.26.3-14+deb7u2 install ok installed libgvc6 libgvc6 2.38.0-7 install ok installed libgvpr1 libgvpr1 2.26.3-14+deb7u2 install ok installed libgvpr2 libgvpr2 2.38.0-7 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 0.9.35-2 install ok installed libhdf4-0-alt libhdf4-0-alt 4.2.10-3 install ok installed libheap-perl libheap-perl 0.80-2 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhpdf-2.2.1 libhpdf-2.2.1 2.2.1-1.1 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.11-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.71-1+b3 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.11-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-2 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.06-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libhwloc-plugins libhwloc-plugins 1.10.0-3 install ok installed libhwloc5:amd64 libhwloc5 1.10.0-3 install ok installed libibverbs1 libibverbs1 1.1.8-1.1 install ok installed libice6:amd64 libice6 2:1.0.9-1+b1 install ok installed libidn11:amd64 libidn11 1.29-1+deb8u2 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-10 install ok installed libimport-into-perl libimport-into-perl 1.002004-1 install ok installed libindirect-perl libindirect-perl 0.33-1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1+b4 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ip-perl libio-socket-ip-perl 0.32-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.002-2+deb8u3 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libio-stringy-perl libio-stringy-perl 2.110-5 install ok installed libipc-run-perl libipc-run-perl 0.92-1+deb8u1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-3+b2 install ok installed libirs-export91 libirs-export91 1:9.9.5.dfsg-9+deb8u15 install ok installed libisc-export95 libisc-export95 1:9.9.5.dfsg-9+deb8u15 install ok installed libisccfg-export90 libisccfg-export90 1:9.9.5.dfsg-9+deb8u15 install ok installed libjasper1:amd64 libjasper1 1.900.1-debian1-2.4+deb8u3 install ok installed libjbig0:amd64 libjbig0 2.1-3.1 install ok installed libjbig2dec0 libjbig2dec0 0.13-4~deb8u2 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.3.1-12 install ok installed libjpeg8:amd64 libjpeg8 8d-1+deb7u1 install ok installed libjs-jquery libjs-jquery 1.7.2+dfsg-3.2 install ok installed libk5crypto3:amd64 libk5crypto3 1.12.1+dfsg-19+deb8u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-5+b1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.12.1+dfsg-19+deb8u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.12.1+dfsg-19+deb8u4 install ok installed liblcms2-2:amd64 liblcms2-2 2.6-3+deb8u1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.40+dfsg-1+deb8u4 install ok installed liblexical-sealrequirehints-perl liblexical-sealrequirehints-perl 0.007-1+b2 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.33-2+b1 install ok installed libllvm3.5:amd64 libllvm3.5 1:3.5-10 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblog-message-perl liblog-message-perl 0.8-1 install ok installed liblog-message-simple-perl liblog-message-simple-perl 0.10-2 install ok installed libltdl7:amd64 libltdl7 2.4.2-1.11+b1 install ok installed liblua5.1-0:amd64 liblua5.1-0 5.1.5-7.1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmagic1:amd64 libmagic1 1:5.22+15-2+deb8u4 install ok installed libmailtools-perl libmailtools-perl 2.13-1 install ok installed libmath-derivative-perl libmath-derivative-perl 0.01-6 install ok installed libmath-spline-perl libmath-spline-perl 0.02-1 install ok installed libmime-tools-perl libmime-tools-perl 5.505-1 install ok installed libmldbm-perl libmldbm-perl 2.05-1 install ok installed libmodule-build-perl libmodule-build-perl 0.421000-2+deb8u1 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-1 install ok installed libmodule-pluggable-perl libmodule-pluggable-perl 5.1-1 install ok installed libmodule-runtime-conflicts-perl libmodule-runtime-conflicts-perl 0.001-1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.014-1 install ok installed libmodule-signature-perl libmodule-signature-perl 0.73-1+deb8u2 install ok installed libmoo-perl libmoo-perl 1.006001-1 install ok installed libmoose-perl libmoose-perl 2.1213-1 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libmro-compat-perl libmro-compat-perl 0.12-1 install ok installed libmultidimensional-perl libmultidimensional-perl 0.010-1+b2 install ok installed libmysqlclient18:amd64 libmysqlclient18 5.5.60-0+deb8u1 install ok installed libnamespace-clean-perl libnamespace-clean-perl 0.25-1 install ok installed libncbi6:amd64 libncbi6 6.1.20120620-8 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libnet-http-perl libnet-http-perl 6.07-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.01-3 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.65-1+deb8u1 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libnuma1:amd64 libnuma1 2.0.10-1 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.19-1 install ok installed libopengl-perl libopengl-perl 0.6703+dfsg-1+b1 deinstall ok config-files libopenmpi1.3 libopenmpi1.3 1.4.5-1 install ok installed libopenmpi1.6 libopenmpi1.6 1.6.5-9.1+deb8u1 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b1 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.20.7-1 install ok installed libpackage-constants-perl libpackage-constants-perl 0.04-1 install ok installed libpackage-deprecationmanager-perl libpackage-deprecationmanager-perl 0.13-1 install ok installed libpackage-stash-perl libpackage-stash-perl 0.37-1 install ok installed libpackage-stash-xs-perl libpackage-stash-xs-perl 0.28-2+b1 install ok installed libpadwalker-perl libpadwalker-perl 1.98-1+b1 install ok installed libpam-cap:amd64 libpam-cap 1:2.24-8 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam-systemd:amd64 libpam-systemd 215-17+deb8u7 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.36.8-3 install ok installed libpango1.0-0:amd64 libpango1.0-0 1.36.8-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.36.8-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.36.8-3 install ok installed libpangox-1.0-0:amd64 libpangox-1.0-0 0.0.2-5 install ok installed libpangoxft-1.0-0:amd64 libpangoxft-1.0-0 1.36.8-3 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu4 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu4 install ok installed libparams-classify-perl libparams-classify-perl 0.013-4+b2 install ok installed libparams-util-perl libparams-util-perl 1.07-2+b1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967009+dfsg-1 install ok installed libpathplan4 libpathplan4 2.38.0-7 install ok installed libpciaccess0:amd64 libpciaccess0 0.13.2-3+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libperl5.20 libperl5.20 5.20.2-3+deb8u11 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.32.6-3 install ok installed libplplot11 libplplot11 5.9.9-5 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libpod-latex-perl libpod-latex-perl 0.61-1 install ok installed libpod-readme-perl libpod-readme-perl 0.11-1 install ok installed libpostscript-perl libpostscript-perl 0.06-2 install ok installed libpq5:amd64 libpq5 9.4.18-0+deb8u1 install ok installed libprocps0:amd64 libprocps0 1:3.3.3-3 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libproj0 libproj0 4.8.0-5 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.9-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.9-2+deb8u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.9-2+deb8u1 install ok installed libqhull5 libqhull5 2009.1-3 install ok installed libqhull6:amd64 libqhull6 2012.1-5 install ok installed libqsastime0:amd64 libqsastime0 5.10.0+dfsg-1 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libregexp-common-perl libregexp-common-perl 2013031301-1 install ok installed librole-tiny-perl librole-tiny-perl 1.003004-1 install ok installed libruby1.9.1 libruby1.9.1 1.9.3.194-8.1+deb7u5 install ok installed libruby2.1:amd64 libruby2.1 2.1.5-2+deb8u3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.26.dfsg1-13+deb8u1 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libset-scalar-perl libset-scalar-perl 1.29-1 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsoap-lite-perl libsoap-lite-perl 1.11-1 install ok installed libsocket-perl libsocket-perl 2.016-1 install ok installed libsoftware-license-perl libsoftware-license-perl 0.103010-3 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-1 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u2 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u8 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0607-1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libstrictures-perl libstrictures-perl 1.005005-1 install ok installed libsub-exporter-perl libsub-exporter-perl 0.986-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001011-1 install ok installed libsub-identify-perl libsub-identify-perl 0.08-1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsub-name-perl libsub-name-perl 0.12-1 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-2 install ok installed libsvg-perl libsvg-perl 2.59-1 install ok installed libswitch-perl libswitch-perl 2.17-2 install ok installed libsystemd-login0:amd64 libsystemd-login0 215-17+deb8u7 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtask-weaken-perl libtask-weaken-perl 1.04-1 install ok installed libtasn1-3:amd64 libtasn1-3 2.13-2+deb7u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.2-3+deb8u3 install ok installed libterm-readkey-perl libterm-readkey-perl 2.32-1+b1 install ok installed libterm-readline-gnu-perl libterm-readline-gnu-perl 1.24-2+b1 install ok installed libterm-ui-perl libterm-ui-perl 0.42-1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-soundex-perl libtext-soundex-perl 3.4-1+b2 install ok installed libtext-template-perl libtext-template-perl 1.46-1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtfbs-perl libtfbs-perl 0.6.1+dfsg-1+b1 install ok installed libthai-data libthai-data 0.1.21-1 install ok installed libthai0:amd64 libthai0 0.1.21-1 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-1 install ok installed libtiff4:amd64 libtiff4 3.9.6-11 install ok installed libtiff5:amd64 libtiff5 4.0.3-12.3+deb8u5 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libtorque2 libtorque2 2.4.16+dfsg-1+deb7u4 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.22-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.22-1 install ok installed libtxc-dxtn-s2tc0:amd64 libtxc-dxtn-s2tc0 0~git20131104-1.1 install ok installed libtype-tiny-perl libtype-tiny-perl 1.000004-1 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.010-1 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libunicode-map-perl libunicode-map-perl 0.112-11+b1 install ok installed liburi-perl liburi-perl 1.64-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libvariable-magic-perl libvariable-magic-perl 0.55-1 install ok installed libvpx1:amd64 libvpx1 1.3.0-3+deb8u1 install ok installed libwww-perl libwww-perl 6.08-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u1 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u1 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.2-3+deb8u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.12-2+b1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.10-3+b1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.10-3+b1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.10-3+b1 install ok installed libxcb-present0:amd64 libxcb-present0 1.10-3+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.10-3+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.10-3+b1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.10-3+b1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+b1 install ok installed libxdot4 libxdot4 2.38.0-7 install ok installed libxext6:amd64 libxext6 2:1.3.3-1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.1-2+deb8u1 install ok installed libxft2:amd64 libxft2 2.3.2-1 install ok installed libxi6:amd64 libxi6 2:1.7.4-1+deb8u1 install ok installed libxml-dom-perl libxml-dom-perl 1.44-1 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-1 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-5 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0116+dfsg-1+deb8u2 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.92-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.11-1 install ok installed libxml-parser-perl libxml-parser-perl 2.41-3 install ok installed libxml-perl libxml-perl 0.08-2 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.07-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.40-2 install ok installed libxml-sax-perl libxml-sax-perl 0.99+dfsg-2 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.54-1 install ok installed libxml-simple-perl libxml-simple-perl 2.20-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.48-1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.13-7 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.13-1 install ok installed libxml2:amd64 libxml2 2.9.1+dfsg1-5+deb8u6 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-1 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-0+deb8u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.8-1+b1 install ok installed libxshmfence1:amd64 libxshmfence1 1.1-4 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.28-2+deb8u3 install ok installed libxt6:amd64 libxt6 1:1.1.4-1+b1 install ok installed libxtables10 libxtables10 1.4.21-2+b1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.3-1+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.1.6-3 install ok installed libyaml-perl libyaml-perl 1.13-1 install ok installed libyaml-syck-perl libyaml-syck-perl 1.27-2+b2 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed lynx lynx 2.8.9dev1-2+deb8u1 install ok installed lynx-cur lynx-cur 2.8.9dev1-2+deb8u1 install ok installed mafft mafft 7.205-1 install ok installed maq maq 0.7.1-5 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.58 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed muscle muscle 1:3.8.31-1 install ok installed mustang mustang 3.2.2-1 install ok installed mysql-common mysql-common 5.5.60-0+deb8u1 install ok installed ncbi-blast+ ncbi-blast+ 2.2.29-3 install ok installed ncbi-data ncbi-data 6.1.20120620-8 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed netbase netbase 5.3 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.3-1+deb8u1 install ok installed openssl openssl 1.0.1t-1+deb8u8 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed pdl pdl 1:2.007-4 install ok installed perl perl 5.20.2-3+deb8u11 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed perl-doc perl-doc 5.20.2-3+deb8u11 install ok installed perl-modules perl-modules 5.20.2-3+deb8u11 install ok installed perl-tk perl-tk 1:804.032-3+b3 install ok installed phyml phyml 2:20120412-2 install ok installed poa poa 2.0+20060928-3 install ok installed poppler-data poppler-data 0.4.7-1 install ok installed prank prank 0.0.140110-1 install ok installed primer3 primer3 2.3.6-1 install ok installed probalign probalign 1.4-3 install ok installed probcons probcons 1.12-9 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed proda proda 1.0-8 install ok installed proj-data proj-data 4.8.0-5 install ok installed psmisc psmisc 22.21-2 install ok installed python python 2.7.9-1 install ok installed python-minimal python-minimal 2.7.9-1 install ok installed python2.7 python2.7 2.7.9-2+deb8u1 install ok installed python2.7-minimal python2.7-minimal 2.7.9-2+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed rename rename 0.20-3 install ok installed ruby ruby 1:2.1.5+deb8u2 install ok installed ruby1.9.1 ruby1.9.1 1.9.3.194-8.1+deb7u5 install ok installed ruby2.1 ruby2.1 2.1.5-2+deb8u3 install ok installed rubygems-integration rubygems-integration 1.8 install ok installed samtools samtools 0.1.19-1 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed sgml-base sgml-base 1.26+nmu4 install ok installed shared-mime-info shared-mime-info 1.3-1 install ok installed sim4 sim4 0.0.20121010-1 install ok installed ssl-cert ssl-cert 1.0.35 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit sysvinit 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed t-coffee t-coffee 11.00.8cbe486-1 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tigr-glimmer tigr-glimmer 3.02-3 install ok installed tm-align tm-align 20140601+dfsg-1 install ok installed ttf-dejavu-core ttf-dejavu-core 2.34-1 install ok installed ttf-liberation ttf-liberation 1.07.4-1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed wise wise 2.4.1-17 install ok installed wise-data wise-data 2.4.1-17 install ok installed x11-common x11-common 1:7.7+7 install ok installed xdg-user-dirs xdg-user-dirs 0.15-2 install ok installed xml-core xml-core 0.13+nmu2 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2+b3 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 4m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 4m42.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', '-ac', '--ignore-obsolete'] 4m46.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', '-ac', '--ignore-obsolete'] 4m46.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 4m46.9s DUMP: 0.15.1 4m46.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 4m46.9s INFO: Running adequate version 0.15.1 now. 4m46.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'libtfbs-perl'] 4m47.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'libtfbs-perl'] 4m47.1s INFO: Running scripts pre_remove 4m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 4m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 4m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 4m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 4m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 4m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 4m55.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 4m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 4m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 4m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 4m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_remove_exceptions'] 4m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/pre_remove_exceptions'] 4m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', 'remove', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libdrm-nouveau2:amd64', 'libyaml-perl', 'libelf1:amd64', 'emboss', 'libproj0', 'libpangoxft-1.0-0:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libmro-compat-perl', 'libxdamage1:amd64', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libtorque2', 'libfile-listing-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'libmath-spline-perl', 'libxml-sax-perl', 'libprocps0:amd64', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'ruby1.9.1', 'libdrm2:amd64', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libhwloc5:amd64', 'libgraph4', 'libgd3:amd64', 'libgsl0ldbl', 'libhtml-format-perl', 'libeval-closure-perl', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'libgl1-mesa-glx:amd64', 'python-minimal', 'libxft2:amd64', 'bwa', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libqhull6:amd64', 'libcupsimage2:amd64', 'libnamespace-clean-perl', 'libdigest-perl-md5-perl', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'ttf-liberation', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libfile-slurp-tiny-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'libxcb-dri3-0:amd64', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libpixman-1-0:amd64', 'proda', 'bedtools', 'primer3', 'libsocket-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libmodule-runtime-perl', 'maq', 'libxxf86vm1:amd64', 'libxslt1.1:amd64', 'libqhull5', 'libmysqlclient18:amd64', 'libidn11:amd64', 'libxml-libxslt-perl', 'libjcode-pm-perl', 'libkrb5support0:amd64', 'libmoose-perl', 'libterm-readline-gnu-perl', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libmodule-runtime-conflicts-perl', 'libjs-jquery', 'libheap-perl', 'libbio-asn1-entrezgene-perl', 'libgmp10:amd64', 'libssl1.0.0:amd64', 'libnettle4:amd64', 'ocl-icd-libopencl1:amd64', 'libdrm-nouveau1a:amd64', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'libp11-kit0:amd64', 'libsoftware-license-perl', 'libpackage-stash-perl', 'libgomp1:amd64', 'libcr0', 'libthai0:amd64', 'libxml-writer-perl', 'hmmer', 'libmagic1:amd64', 'libplplot11', 'libwww-perl', 'apache2-mpm-worker', 'apache2.2-common', 'libmath-derivative-perl', 'libdevel-stacktrace-perl', 'libxml-sax-base-perl', 'libsasl2-modules-db:amd64', 'poppler-data', 'libopengl-perl', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'dialign-tx-data', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'libxml-dom-perl', 'openssl', 'fontconfig-config', 'libhwloc-plugins', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libhdf4-0-alt', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'fftw2', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'libalgorithm-munkres-perl', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'ncbi-blast+', 'clustalw', 'libncbi6:amd64', 'libcsiro0:amd64', 'libgvpr1', 'libgvpr2', 'libisccfg-export90', 'phyml', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'libglapi-mesa:amd64', 'libapache2-mod-perl2', 'libpackage-deprecationmanager-perl', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'libdrm-radeon1:amd64', 'fonts-liberation', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libxau6:amd64', 'libclass-load-perl', 'iproute2', 'krb5-locales', 'exonerate', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libnuma1:amd64', 'libparams-util-perl', 'iproute', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'apache2.2-bin', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libdrm-intel1:amd64', 'libgdbm3:amd64', 'fontconfig', 'libace-perl', 'infernal', 'libclass-c3-xs-perl', 'libpciaccess0:amd64', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libxext6:amd64', 'libbsd0:amd64', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'mafft', 'apache2-utils', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'libllvm3.5:amd64', 'libjpeg8:amd64', 'libtype-tiny-xs-perl', 'emboss-lib', 'libswitch-perl', 'libhttp-message-perl', 'libsub-exporter-perl', 'blast2', 'libio-sessiondata-perl', 'sgml-base', 'libhtml-parser-perl', 'libpod-readme-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libgnutls-deb0-28:amd64', 'libpangox-1.0-0:amd64', 'mime-support', 'libpango1.0-0:amd64', 'libvariable-magic-perl', 'libxcb-sync1:amd64', 'ncbi-data', 'libharfbuzz0b:amd64', 'pdl', 'perl-tk', 'libpangoft2-1.0-0:amd64', 'libxcb-present0:amd64', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libsm6:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'proj-data', 'libqsastime0:amd64', 'libsub-identify-perl', 'libio-socket-ip-perl', 'libpaper-utils', 'libxcb-glx0:amd64', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxt6:amd64', 'kalign', 'libffi6:amd64', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'freeglut3:amd64', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libffi5:amd64', 'libgl1-mesa-dri:amd64', 'libindirect-perl', 'libxml-regexp-perl', 'libjbig2dec0', 'samtools', 'libxtables10', 'libtiff4:amd64', 'probalign', 'libio-pty-perl', 'libpathplan4', 'libcrypt-rc4-perl', 'libcgraph6', 'libx11-xcb1:amd64', 'libyaml-syck-perl', 'libcgraph5', 'libibverbs1', 'libgvc5', 'libgvc6', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libxml-sax-expat-perl', 'libbit-vector-perl', 'libdbi-perl', 'libmailtools-perl', 't-coffee', 'libdist-checkconflicts-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'libxml-sax-writer-perl', 'libmultidimensional-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'libterm-readkey-perl', 'apache2-bin', 'libsystemd-login0:amd64', 'libedit2:amd64', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'shared-mime-info', 'libxml2:amd64', 'libsoap-lite-perl', 'libxi6:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libtree-dagnode-perl', 'tigr-glimmer', 'mustang', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'libperl5.20', 'libparams-classify-perl', 'dialign-tx', 'libclass-tiny-perl', 'libxml-twig-perl', 'libxdmcp6:amd64', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libxml-parser-perl', 'libregexp-common-perl', 'libclass-load-xs-perl', 'libgs9', 'libfreetype6:amd64', 'libxml-perl', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'libbsd-resource-perl', 'perl', 'libatm1:amd64', 'libxshmfence1:amd64', 'libhttp-daemon-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'netbase', 'libxrender1:amd64', 'libxaw7:amd64', 'libjbig0:amd64', 'libruby1.9.1', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-partialdump-perl', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libtxc-dxtn-s2tc0:amd64', 'libhttp-negotiate-perl', 'libopenmpi1.3', 'libunicode-map-perl', 'libopenmpi1.6', 'libaprutil1:amd64', 'file', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'libxfixes3:amd64', 'emboss-data', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libxcb-dri2-0:amd64', 'libsvg-perl', 'libdevel-caller-perl', 'liblwp-protocol-https-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'libsasl2-2:amd64', 'libcdt5', 'libcdt4', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl', 'libtfbs-perl'] 5m2.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libgvc5' is not installed, so not removed Package 'libopenmpi1.3' is not installed, so not removed The following packages will be REMOVED: amap-align apache2 apache2-bin apache2-data apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common bedtools bioperl bioperl-run blast2 bowtie bwa ca-certificates clustalo clustalw dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate fftw2 file fontconfig fontconfig-config fonts-dejavu-core fonts-droid fonts-liberation freeglut3 ghostscript graphviz gsfonts hmmer ifupdown infernal iproute iproute2 isc-dhcp-client isc-dhcp-common javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libatm1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbareword-filehandles-perl libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcarp-clan-perl libcdt4 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph5 libcgraph6 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclass-method-modifiers-perl libclass-tiny-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcr0 libcrypt-rc4-perl libcrypt-ssleay-perl libcsiro0 libcups2 libcupsfilters1 libcupsimage2 libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdb5.1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-partialdump-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdist-checkconflicts-perl libdns-export100 libdrm-intel1 libdrm-nouveau1a libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl liberror-perl libeval-closure-perl libexporter-tiny-perl libfcgi-perl libffi5 libffi6 libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgcrypt11 libgd-perl libgd2-xpm libgd3 libgdbm3 libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libglu1-mesa libgmp10 libgnutls-deb0-28 libgnutls26 libgomp1 libgraph-perl libgraph4 libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libgvc6 libgvpr1 libgvpr2 libharfbuzz0b libhdf4-0-alt libheap-perl libhogweed2 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libice6 libidn11 libijs-0.35 libimport-into-perl libindirect-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libjasper1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjpeg8 libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-moreutils-perl libllvm3.5 liblog-message-perl liblog-message-simple-perl libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmailtools-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-build-perl libmodule-implementation-perl libmodule-pluggable-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmoose-perl libmro-compat-perl libmultidimensional-perl libmysqlclient18 libnamespace-clean-perl libncbi6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnuma1 libole-storage-lite-perl libopengl-perl libopenmpi1.6 libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpadwalker-perl libpango-1.0-0 libpango1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangox-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libperl5.20 libpixman-1-0 libplplot11 libpng12-0 libpod-latex-perl libpod-readme-perl libpostscript-perl libpq5 libprocps0 libproj0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libqhull5 libqhull6 libqsastime0 libquadmath0 libregexp-common-perl librole-tiny-perl libruby1.9.1 libruby2.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsm6 libsoap-lite-perl libsocket-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libswitch-perl libsystemd-login0 libtask-weaken-perl libtasn1-3 libtasn1-6 libterm-readkey-perl libterm-readline-gnu-perl libterm-ui-perl libtext-soundex-perl libtext-template-perl libtfbs-perl libthai-data libthai0 libtie-ixhash-perl libtiff4 libtiff5 libtimedate-perl libtorque2 libtree-dagnode-perl libtry-tiny-perl libtxc-dxtn-s2tc0 libtype-tiny-perl libtype-tiny-xs-perl libunicode-map-perl liburi-perl libvariable-magic-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxi6 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxshmfence1 libxslt1.1 libxt6 libxtables10 libxxf86vm1 libyaml-0-2 libyaml-perl libyaml-syck-perl lynx lynx-cur mafft maq mime-support muscle mustang mysql-common ncbi-blast+ ncbi-data netbase ocl-icd-libopencl1 openssl pdl perl perl-doc perl-modules perl-tk phyml poa poppler-data prank primer3 probalign probcons proda proj-data python python-minimal python2.7 python2.7-minimal rename ruby ruby1.9.1 ruby2.1 rubygems-integration samtools sgml-base shared-mime-info sim4 ssl-cert t-coffee tigr-glimmer tm-align ttf-dejavu-core ttf-liberation wise wise-data x11-common xdg-user-dirs xml-core 0 upgraded, 0 newly installed, 451 to remove and 0 not upgraded. After this operation, 1068 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30974 files and directories currently installed.) Removing amap-align (2.2-4) ... Removing apache2.2-common (2.4.10-10+deb8u12) ... Removing apache2-mpm-worker (2.4.10-10+deb8u12) ... Removing apache2 (2.4.10-10+deb8u12) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing apache2.2-bin (2.4.10-10+deb8u12) ... Removing libapache2-reload-perl (0.12-3) ... Removing libapache-dbi-perl (1.12-1) ... Removing libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... Removing apache2-bin (2.4.10-10+deb8u12) ... Removing apache2-data (2.4.10-10+deb8u12) ... Removing apache2-utils (2.4.10-10+deb8u12) ... Removing bedtools (2.21.0-1) ... Removing libtfbs-perl (0.6.1+dfsg-1+b1) ... Removing bioperl-run (1.6.9-2) ... Removing bioperl (1.6.924-1) ... Removing blast2 (1:2.2.26.20120620-8) ... Removing bowtie (1.1.1-2) ... Removing bwa (0.7.10-1) ... Removing ruby (1:2.1.5+deb8u2) ... Removing ruby2.1 (2.1.5-2+deb8u3) ... Removing rubygems-integration (1.8) ... Removing libgraphviz-perl (2.16-1) ... Removing libxml-xpath-perl (1.13-7) ... Removing clustalo (1.2.1-1) ... Removing clustalw (2.1+lgpl-4) ... Removing dialign (2.2.1-7) ... Removing dialign-tx (1.0.2-7) ... Removing dialign-tx-data (1.0.2-7) ... Removing emboss (6.6.0+dfsg-1) ... Removing emboss-data (6.6.0+dfsg-1) ... Removing emboss-lib (6.6.0+dfsg-1) ... Removing exonerate (2.2.0-6) ... Removing fftw2 (2.1.5-1+b1) ... Removing file (1:5.22+15-2+deb8u4) ... Removing libpango1.0-0:amd64 (1.36.8-3) ... Removing libpangox-1.0-0:amd64 (0.0.2-5) ... Removing libpangoxft-1.0-0:amd64 (1.36.8-3) ... Removing libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Removing perl-tk (1:804.032-3+b3) ... Removing libxft2:amd64 (2.3.2-1) ... Removing ttf-dejavu-core (2.34-1) ... Removing fonts-dejavu-core (2.34-1) ... Removing fonts-droid (1:4.4.4r2-6) ... Removing ttf-liberation (1.07.4-1) ... Removing libopengl-perl (0.6703+dfsg-1+b1) ... Removing freeglut3:amd64 (2.8.1-2) ... Removing ghostscript (9.06~dfsg-2+deb8u7) ... Removing graphviz (2.38.0-7) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Removing hmmer (3.1b1-3) ... Removing ifupdown (0.7.53.1) ... Removing infernal (1.1.1-2) ... Removing iproute (1:3.16.0-2) ... Removing isc-dhcp-client (4.3.1-6+deb8u3) ... Removing iproute2 (3.16.0-2) ... Removing isc-dhcp-common (4.3.1-6+deb8u3) ... Removing javascript-common (11) ... Removing kalign (1:2.03+20110620-2) ... Removing krb5-locales (1.12.1+dfsg-19+deb8u4) ... Removing libace-perl (1.92-3+b1) ... Removing libmoose-perl (2.1213-1) ... Removing libsoftware-license-perl (0.103010-3) ... Removing libdata-section-perl (0.200006-1) ... Removing libmro-compat-perl (0.12-1) ... Removing libclass-c3-perl (0.26-1) ... Removing libalgorithm-c3-perl (0.09-1) ... Removing libalgorithm-diff-xs-perl (0.04-3+b1) ... Removing libalgorithm-diff-perl (1.19.02-3) ... Removing libalgorithm-munkres-perl (0.08-2) ... Removing libaprutil1-ldap:amd64 (1.5.4-1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Removing libaprutil1:amd64 (1.5.4-1) ... Removing libapr1:amd64 (1.5.1-3) ... Removing libarchive-extract-perl (0.72-1) ... Removing libargtable2-0 (12-1.1) ... Removing libarray-compare-perl (2.11-1) ... Removing libatm1:amd64 (1:2.5.1-1.5) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing libgs9 (9.06~dfsg-2+deb8u7) ... Removing libdevel-partialdump-perl (0.17-1) ... Removing libclass-load-xs-perl (0.08-1+b1) ... Removing libclass-load-perl (0.22-1) ... Removing libnamespace-clean-perl (0.25-1) ... Removing libb-hooks-endofscope-perl (0.13-1) ... Removing libmultidimensional-perl (0.010-1+b2) ... Removing libbareword-filehandles-perl (0.003-1+b2) ... Removing libb-hooks-op-check-perl (0.19-2+b1) ... Removing libbio-asn1-entrezgene-perl (1.700-1) ... Removing libbio-perl-run-perl (1.6.9-2) ... Removing libbio-perl-perl (1.6.924-1) ... Removing libdate-calc-xs-perl (6.3-2) ... Removing libdate-calc-perl (6.3-2) ... Removing libbit-vector-perl (7.3-1+b2) ... Removing libbsd-resource-perl (1.2907-1+b2) ... Removing lynx (2.8.9dev1-2+deb8u1) ... Removing lynx-cur (2.8.9dev1-2+deb8u1) ... Removing libgl1-mesa-dri:amd64 (10.3.2-1+deb8u1) ... Removing libllvm3.5:amd64 (1:3.5-10) ... Removing libedit2:amd64 (3.1-20140620-2) ... Removing libbsd0:amd64 (0.7.0-2) ... Removing libcache-cache-perl (1.07-2) ... Removing libgvc6 (2.38.0-7) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libcarp-clan-perl (6.04-1) ... Removing libgvpr1 (2.26.3-14+deb7u2) ... Removing libcgraph5 (2.26.3-14+deb7u2) ... Removing libgvpr2 (2.38.0-7) ... Removing libcgraph6 (2.38.0-7) ... Removing libcdt5 (2.38.0-7) ... Removing libcgi-fast-perl (1:2.04-1) ... Removing libcgi-pm-perl (4.09-1) ... Removing libclass-c3-xs-perl (0.13-2+b1) ... Removing libxmlrpc-lite-perl (0.717-1) ... Removing libsoap-lite-perl (1.11-1) ... Removing libclass-inspector-perl (1.28-1) ... Removing libclass-isa-perl (0.36-5) ... Removing libmoo-perl (1.006001-1) ... Removing librole-tiny-perl (1.003004-1) ... Removing libclass-method-modifiers-perl (2.11-1) ... Removing libclass-tiny-perl (1.000-1) ... Removing libclass-xsaccessor-perl (1.19-2+b4) ... Removing libclone-perl (0.37-1+b1) ... Removing libconvert-binary-c-perl (0.76-3+b2) ... Removing libmime-tools-perl (5.505-1) ... Removing libconvert-binhex-perl (1.123-2) ... Removing libmodule-build-perl (0.421000-2+deb8u1) ... Removing 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Removing 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Removing libcpan-meta-perl (2.142690-1) ... Removing libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Removing libcr0 (0.8.5-2.2) ... Removing libspreadsheet-parseexcel-perl (0.6500-1) ... Removing libcrypt-rc4-perl (2.02-2) ... Removing libcrypt-ssleay-perl (0.58-1+b2) ... Removing libplplot11 (5.9.9-5) ... Removing libcsiro0:amd64 (5.10.0+dfsg-1) ... Removing libeval-closure-perl (0.11-1) ... Removing libsub-exporter-perl (0.986-1) ... Removing libdata-optlist-perl (0.109-1) ... Removing libdata-stag-perl (0.13-1) ... Removing libdate-manip-perl (6.47-1) ... Removing libdb5.1:amd64 (5.1.29-5) ... Removing libdbd-mysql-perl (4.028-2+deb8u2) ... Removing libdbd-pg-perl (3.4.2-1) ... Removing libdbd-sqlite3-perl (1.44-1) ... Removing libdbi-perl (1.631-3+b1) ... Removing libdevel-lexalias-perl (0.05-1+b2) ... Removing libdevel-caller-perl (2.06-1+b2) ... Removing libdevel-globaldestruction-perl (0.13-1) ... Removing libdevel-stacktrace-perl (1.3400-1) ... Removing libdevel-symdump-perl (2.12-1) ... Removing libdigest-perl-md5-perl (1.9-1) ... Removing libmodule-runtime-conflicts-perl (0.001-1) ... Removing libdist-checkconflicts-perl (0.11-1) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdrm-intel1:amd64 (2.4.58-2) ... Removing libdrm-nouveau1a:amd64 (2.4.40-1~deb7u2) ... Removing libdrm-nouveau2:amd64 (2.4.58-2) ... Removing libdrm-radeon1:amd64 (2.4.58-2) ... Removing libglu1-mesa:amd64 (9.0.0-2) ... Removing libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Removing libdrm2:amd64 (2.4.58-2) ... Removing libelf1:amd64 (0.159-4.2) ... Removing liberror-perl (0.17-1.1) ... Removing libtype-tiny-perl (1.000004-1) ... Removing libexporter-tiny-perl (0.038-2) ... Removing libfcgi-perl (0.77-1+deb8u1) ... Removing ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Removing libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Removing libffi5:amd64 (3.0.10-3) ... Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Removing ncbi-blast+ (2.2.29-3) ... Removing python (2.7.9-1) ... Removing python2.7 (2.7.9-2+deb8u1) ... Removing libsvg-graph-perl (0.02-2) ... Removing libtree-dagnode-perl (1.22-1) ... Removing libfile-slurp-tiny-perl (0.003-1) ... Removing libhtml-format-perl (2.11-1) ... Removing libfont-afm-perl (1.20-1) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Removing libfreezethaw-perl (0.5001-1) ... Removing libgnutls26:amd64 (2.12.20-8+deb7u5) ... Removing libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Removing libgd-perl (2.53-1+b1) ... Removing pdl (1:2.007-4) ... Removing libgd3:amd64 (2.1.0-5+deb8u11) ... Removing xml-core (0.13+nmu2) ... Removing sgml-base (1.26+nmu4) ... Removing rename (0.20-3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing tm-align (20140601+dfsg-1) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Removing wise (2.4.1-17) ... Removing shared-mime-info (1.3-1) ... Removing libglib2.0-data (2.42.1-1) ... Removing libpq5:amd64 (9.4.18-0+deb8u1) ... Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Removing libgomp1:amd64 (4.9.2-10+deb8u1) ... Removing libgraph-perl (1:0.96-1.1) ... Removing libgraph4 (2.26.3-14+deb7u2) ... Removing libharfbuzz0b:amd64 (0.9.35-2) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing libgs9-common (9.06~dfsg-2+deb8u7) ... Removing libgsl0ldbl (1.16+dfsg-2) ... Removing libhdf4-0-alt (4.2.10-3) ... Removing libheap-perl (0.80-2) ... Removing libhpdf-2.2.1 (2.2.1-1.1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhtml-tableextract-perl (2.11-1) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libhwloc-plugins (1.10.0-3) ... Removing libhwloc5:amd64 (1.10.0-3) ... Removing libibverbs1 (1.1.8-1.1) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Removing libxmu6:amd64 (2:1.1.2-1) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Removing libice6:amd64 (2:1.0.9-1+b1) ... Removing libidn11:amd64 (1.29-1+deb8u2) ... Removing libijs-0.35:amd64 (0.35-10) ... Removing libimport-into-perl (1.002004-1) ... Removing libindirect-perl (0.33-1) ... Removing libipc-run-perl (0.92-1+deb8u1) ... Removing libio-pty-perl (1:1.08-1+b4) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libio-socket-ip-perl (0.32-1) ... Removing libmailtools-perl (2.13-1) ... Removing libnet-smtp-ssl-perl (1.01-3) ... Removing libio-string-perl (1.08-3) ... Removing libole-storage-lite-perl (0.19-1) ... Removing libio-stringy-perl (2.110-5) ... Removing libipc-sharelite-perl (0.17-3+b2) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Removing libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Removing libtiff4:amd64 (3.9.6-11) ... Removing libjbig2dec0 (0.13-4~deb8u2) ... Removing libjcode-pm-perl (2.06-1) ... Removing libjpeg8:amd64 (8d-1+deb7u1) ... Removing libjs-jquery (1.7.2+dfsg-3.2) ... Removing liblcms2-2:amd64 (2.6-3+deb8u1) ... Removing liblexical-sealrequirehints-perl (0.007-1+b2) ... Removing libstatistics-descriptive-perl (3.0607-1) ... Removing libpackage-deprecationmanager-perl (0.13-1) ... Removing liblist-moreutils-perl (0.33-2+b1) ... Removing libterm-ui-perl (0.42-1) ... Removing liblog-message-simple-perl (0.10-2) ... Removing liblog-message-perl (0.8-1) ... Removing liblua5.1-0:amd64 (5.1.5-7.1) ... Removing libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Removing libmath-spline-perl (0.02-1) ... Removing libmath-derivative-perl (0.01-6) ... Removing libmldbm-perl (2.05-1) ... Removing libpackage-stash-perl (0.37-1) ... Removing libmodule-implementation-perl (0.09-1) ... Removing libmodule-pluggable-perl (5.1-1) ... Removing libmodule-runtime-perl (0.014-1) ... Removing libmodule-signature-perl (0.73-1+deb8u2) ... Removing libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Removing libncbi6:amd64 (6.1.20120620-8) ... Removing libnuma1:amd64 (2.0.10-1) ... Removing libossp-uuid-perl (1.6.2-1.5+b1) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Removing libpackage-constants-perl (0.04-1) ... Removing libpackage-stash-xs-perl (0.28-2+b1) ... Removing libpadwalker-perl (1.98-1+b1) ... Removing libpaper-utils (1.1.24+nmu4) ... Removing libpaper1:amd64 (1.1.24+nmu4) ... Removing libparams-classify-perl (0.013-4+b2) ... Removing libparams-util-perl (1.07-2+b1) ... Removing libspreadsheet-writeexcel-perl (2.40-1) ... Removing libparse-recdescent-perl (1.967009+dfsg-1) ... Removing libpathplan4 (2.38.0-7) ... Removing libpciaccess0:amd64 (0.13.2-3+b1) ... Removing libperl5.20 (5.20.2-3+deb8u11) ... Removing libpixman-1-0:amd64 (0.32.6-3) ... Removing libpod-latex-perl (0.61-1) ... Removing 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Removing 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Removing libpod-readme-perl (0.11-1) ... Removing libpostscript-perl (0.06-2) ... Removing libprocps0:amd64 (1:3.3.3-3) ... Removing libproj0 (4.8.0-5) ... Removing libpython-stdlib:amd64 (2.7.9-1) ... Removing python-minimal (2.7.9-1) ... Removing python2.7-minimal (2.7.9-2+deb8u1) ... Removing libqhull5 (2009.1-3) ... Removing libqhull6:amd64 (2012.1-5) ... Removing libqsastime0:amd64 (5.10.0+dfsg-1) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Removing libregexp-common-perl (2013031301-1) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libset-scalar-perl (1.29-1) ... Removing libsocket-perl (2.016-1) ... Removing libsort-naturally-perl (1.03-1) ... Removing ssl-cert (1.0.35) ... Removing libstrictures-perl (1.005005-1) ... Removing libsub-exporter-progressive-perl (0.001011-1) ... Removing libsub-identify-perl (0.08-1) ... Removing libsub-install-perl (0.928-1) ... Removing libsub-name-perl (0.12-1) ... Removing libsvg-perl (2.59-1) ... Removing libswitch-perl (2.17-2) ... Removing libsystemd-login0:amd64 (215-17+deb8u7) ... Removing libtask-weaken-perl (1.04-1) ... Removing libtasn1-3:amd64 (2.13-2+deb7u2) ... Removing libterm-readkey-perl (2.32-1+b1) ... Removing libterm-readline-gnu-perl (1.24-2+b1) ... Removing libtext-soundex-perl (3.4-1+b2) ... Removing libtext-template-perl (1.46-1) ... Removing libtie-ixhash-perl (1.23-1) ... Removing libtorque2 (2.4.16+dfsg-1+deb7u4) ... Removing libtry-tiny-perl (0.22-1) ... Removing libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... Removing libtype-tiny-xs-perl (0.010-1) ... Removing libunicode-map-perl (0.112-11+b1) ... Removing libvariable-magic-perl (0.55-1) ... Removing libvpx1:amd64 (1.3.0-3+deb8u1) ... Removing libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Removing libxcb-sync1:amd64 (1.10-3+b1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxcb-dri2-0:amd64 (1.10-3+b1) ... Removing libxcb-dri3-0:amd64 (1.10-3+b1) ... Removing libxcb-glx0:amd64 (1.10-3+b1) ... Removing libxcb-present0:amd64 (1.10-3+b1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Removing libxdamage1:amd64 (1:1.1.4-2+b1) ... Removing libxdot4 (2.38.0-7) ... Removing libxi6:amd64 (2:1.7.4-1+deb8u1) ... Removing libxext6:amd64 (2:1.3.3-1) ... Removing libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Removing libxml-dom-xpath-perl (0.14-1) ... Removing libxml-dom-perl (1.44-1) ... Removing libxml-sax-writer-perl (0.54-1) ... Removing libxml-filter-buffertext-perl (1.01-5) ... Removing libxml-simple-perl (2.20-1) ... Removing libxml-libxslt-perl (1.92-1+b1) ... Removing libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.11-1) ... Removing libxml-perl (0.08-2) ... Removing libxml-regexp-perl (0.04-1) ... Removing libxml-sax-base-perl (1.07-1) ... Removing libxml-twig-perl (1:3.48-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libxml-xpathengine-perl (0.13-1) ... Removing libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libxshmfence1:amd64 (1.1-4) ... Removing libxtables10 (1.4.21-2+b1) ... Removing libyaml-0-2:amd64 (0.1.6-3) ... Removing libyaml-perl (1.13-1) ... Removing libyaml-syck-perl (1.27-2+b2) ... Removing mafft (7.205-1) ... Removing maq (0.7.1-5) ... Removing muscle (1:3.8.31-1) ... Removing mustang (3.2.2-1) ... Removing mysql-common (5.5.60-0+deb8u1) ... Removing ncbi-data (6.1.20120620-8) ... Removing ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... Removing perl-doc (5.20.2-3+deb8u11) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing phyml (2:20120412-2) ... Removing poa (2.0+20060928-3) ... Removing poppler-data (0.4.7-1) ... Removing prank (0.0.140110-1) ... Removing primer3 (2.3.6-1) ... Removing probalign (1.4-3) ... Removing probcons (1.12-9) ... Removing proda (1.0-8) ... Removing proj-data (4.8.0-5) ... Removing samtools (0.1.19-1) ... Removing sim4 (0.0.20121010-1) ... Removing t-coffee (11.00.8cbe486-1) ... Removing tigr-glimmer (3.02-3) ... Removing wise-data (2.4.1-17) ... Removing x11-common (1:7.7+7) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-user-dirs (0.15-2) ... Removing libxml-parser-perl (2.41-3) ... Removing libpango-1.0-0:amd64 (1.36.8-3) ... Removing fontconfig (2.11.0-6.3+deb8u1) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-liberation (1.07.4-1) ... Removing libcdt4 (2.26.3-14+deb7u2) ... Removing libthai0:amd64 (0.1.21-1) ... Removing libdatrie1:amd64 (0.2.8-1) ... Removing libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Removing libglib2.0-0:amd64 (2.42.1-1+b1) ... Removing libltdl7:amd64 (2.4.2-1.11+b1) ... Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing libthai-data (0.1.21-1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Removing libx11-data (2:1.6.2-3+deb8u1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Removing mime-support (3.58) ... Removing libwww-perl (6.08-1) ... Removing libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-1) ... Removing libhtml-parser-perl (3.71-1+b3) ... Removing libhtml-tagset-perl (3.20-2) ... Removing libhttp-cookies-perl (6.01-1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libnet-http-perl (6.07-1) ... Removing libio-socket-ssl-perl (2.002-2+deb8u3) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Removing libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12) ... Removing libnet-ssleay-perl (1.65-1+deb8u1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libwww-robotrules-perl (6.01-1) ... Removing netbase (5.3) ... Removing ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Removing libcups2:amd64 (1.7.5-11+deb8u2) ... Removing libavahi-client3:amd64 (0.6.31-5) ... Removing libavahi-common3:amd64 (0.6.31-5) ... Removing libavahi-common-data:amd64 (0.6.31-5) ... Removing libhttp-message-perl (6.06-1) ... Removing libencode-locale-perl (1.03-1) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Removing openssl (1.0.1t-1+deb8u8) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Removing libtimedate-perl (2.3000-2) ... Removing liburi-perl (1.64-1) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing perl (5.20.2-3+deb8u11) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Removing perl-modules (5.20.2-3+deb8u11) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 5m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', 'remove', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libdrm-nouveau2:amd64', 'libyaml-perl', 'libelf1:amd64', 'emboss', 'libproj0', 'libpangoxft-1.0-0:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libmro-compat-perl', 'libxdamage1:amd64', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libtorque2', 'libfile-listing-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'libmath-spline-perl', 'libxml-sax-perl', 'libprocps0:amd64', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'ruby1.9.1', 'libdrm2:amd64', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libhwloc5:amd64', 'libgraph4', 'libgd3:amd64', 'libgsl0ldbl', 'libhtml-format-perl', 'libeval-closure-perl', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'libgl1-mesa-glx:amd64', 'python-minimal', 'libxft2:amd64', 'bwa', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libqhull6:amd64', 'libcupsimage2:amd64', 'libnamespace-clean-perl', 'libdigest-perl-md5-perl', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'ttf-liberation', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libfile-slurp-tiny-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'libxcb-dri3-0:amd64', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libpixman-1-0:amd64', 'proda', 'bedtools', 'primer3', 'libsocket-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libmodule-runtime-perl', 'maq', 'libxxf86vm1:amd64', 'libxslt1.1:amd64', 'libqhull5', 'libmysqlclient18:amd64', 'libidn11:amd64', 'libxml-libxslt-perl', 'libjcode-pm-perl', 'libkrb5support0:amd64', 'libmoose-perl', 'libterm-readline-gnu-perl', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libmodule-runtime-conflicts-perl', 'libjs-jquery', 'libheap-perl', 'libbio-asn1-entrezgene-perl', 'libgmp10:amd64', 'libssl1.0.0:amd64', 'libnettle4:amd64', 'ocl-icd-libopencl1:amd64', 'libdrm-nouveau1a:amd64', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'libp11-kit0:amd64', 'libsoftware-license-perl', 'libpackage-stash-perl', 'libgomp1:amd64', 'libcr0', 'libthai0:amd64', 'libxml-writer-perl', 'hmmer', 'libmagic1:amd64', 'libplplot11', 'libwww-perl', 'apache2-mpm-worker', 'apache2.2-common', 'libmath-derivative-perl', 'libdevel-stacktrace-perl', 'libxml-sax-base-perl', 'libsasl2-modules-db:amd64', 'poppler-data', 'libopengl-perl', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'dialign-tx-data', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'libxml-dom-perl', 'openssl', 'fontconfig-config', 'libhwloc-plugins', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libhdf4-0-alt', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'fftw2', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'libalgorithm-munkres-perl', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'ncbi-blast+', 'clustalw', 'libncbi6:amd64', 'libcsiro0:amd64', 'libgvpr1', 'libgvpr2', 'libisccfg-export90', 'phyml', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'libglapi-mesa:amd64', 'libapache2-mod-perl2', 'libpackage-deprecationmanager-perl', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'libdrm-radeon1:amd64', 'fonts-liberation', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libxau6:amd64', 'libclass-load-perl', 'iproute2', 'krb5-locales', 'exonerate', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libnuma1:amd64', 'libparams-util-perl', 'iproute', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'apache2.2-bin', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libdrm-intel1:amd64', 'libgdbm3:amd64', 'fontconfig', 'libace-perl', 'infernal', 'libclass-c3-xs-perl', 'libpciaccess0:amd64', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libxext6:amd64', 'libbsd0:amd64', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'mafft', 'apache2-utils', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'libllvm3.5:amd64', 'libjpeg8:amd64', 'libtype-tiny-xs-perl', 'emboss-lib', 'libswitch-perl', 'libhttp-message-perl', 'libsub-exporter-perl', 'blast2', 'libio-sessiondata-perl', 'sgml-base', 'libhtml-parser-perl', 'libpod-readme-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libgnutls-deb0-28:amd64', 'libpangox-1.0-0:amd64', 'mime-support', 'libpango1.0-0:amd64', 'libvariable-magic-perl', 'libxcb-sync1:amd64', 'ncbi-data', 'libharfbuzz0b:amd64', 'pdl', 'perl-tk', 'libpangoft2-1.0-0:amd64', 'libxcb-present0:amd64', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libsm6:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'proj-data', 'libqsastime0:amd64', 'libsub-identify-perl', 'libio-socket-ip-perl', 'libpaper-utils', 'libxcb-glx0:amd64', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxt6:amd64', 'kalign', 'libffi6:amd64', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'freeglut3:amd64', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libffi5:amd64', 'libgl1-mesa-dri:amd64', 'libindirect-perl', 'libxml-regexp-perl', 'libjbig2dec0', 'samtools', 'libxtables10', 'libtiff4:amd64', 'probalign', 'libio-pty-perl', 'libpathplan4', 'libcrypt-rc4-perl', 'libcgraph6', 'libx11-xcb1:amd64', 'libyaml-syck-perl', 'libcgraph5', 'libibverbs1', 'libgvc5', 'libgvc6', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libxml-sax-expat-perl', 'libbit-vector-perl', 'libdbi-perl', 'libmailtools-perl', 't-coffee', 'libdist-checkconflicts-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'libxml-sax-writer-perl', 'libmultidimensional-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'libterm-readkey-perl', 'apache2-bin', 'libsystemd-login0:amd64', 'libedit2:amd64', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'shared-mime-info', 'libxml2:amd64', 'libsoap-lite-perl', 'libxi6:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libtree-dagnode-perl', 'tigr-glimmer', 'mustang', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'libperl5.20', 'libparams-classify-perl', 'dialign-tx', 'libclass-tiny-perl', 'libxml-twig-perl', 'libxdmcp6:amd64', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libxml-parser-perl', 'libregexp-common-perl', 'libclass-load-xs-perl', 'libgs9', 'libfreetype6:amd64', 'libxml-perl', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'libbsd-resource-perl', 'perl', 'libatm1:amd64', 'libxshmfence1:amd64', 'libhttp-daemon-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'netbase', 'libxrender1:amd64', 'libxaw7:amd64', 'libjbig0:amd64', 'libruby1.9.1', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-partialdump-perl', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libtxc-dxtn-s2tc0:amd64', 'libhttp-negotiate-perl', 'libopenmpi1.3', 'libunicode-map-perl', 'libopenmpi1.6', 'libaprutil1:amd64', 'file', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'libxfixes3:amd64', 'emboss-data', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libxcb-dri2-0:amd64', 'libsvg-perl', 'libdevel-caller-perl', 'liblwp-protocol-https-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'libsasl2-2:amd64', 'libcdt5', 'libcdt4', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl', 'libtfbs-perl'] 5m2.0s INFO: Running scripts post_remove 5m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_remove_exceptions'] 5m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_remove_exceptions'] 5m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg', '--purge', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libdrm-nouveau2:amd64', 'libyaml-perl', 'libelf1:amd64', 'emboss', 'libproj0', 'libpangoxft-1.0-0:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libmro-compat-perl', 'libxdamage1:amd64', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libtorque2', 'libfile-listing-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'libmath-spline-perl', 'libxml-sax-perl', 'libprocps0:amd64', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'ruby1.9.1', 'libdrm2:amd64', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libhwloc5:amd64', 'libgraph4', 'libgd3:amd64', 'libgsl0ldbl', 'libhtml-format-perl', 'libeval-closure-perl', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'libgl1-mesa-glx:amd64', 'python-minimal', 'libxft2:amd64', 'bwa', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libqhull6:amd64', 'libcupsimage2:amd64', 'libnamespace-clean-perl', 'libdigest-perl-md5-perl', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'ttf-liberation', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libfile-slurp-tiny-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'libxcb-dri3-0:amd64', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libpixman-1-0:amd64', 'proda', 'bedtools', 'primer3', 'libsocket-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libmodule-runtime-perl', 'maq', 'libxxf86vm1:amd64', 'libxslt1.1:amd64', 'libqhull5', 'libmysqlclient18:amd64', 'libidn11:amd64', 'libxml-libxslt-perl', 'libjcode-pm-perl', 'libkrb5support0:amd64', 'libmoose-perl', 'libterm-readline-gnu-perl', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libmodule-runtime-conflicts-perl', 'libjs-jquery', 'libheap-perl', 'libbio-asn1-entrezgene-perl', 'libgmp10:amd64', 'libssl1.0.0:amd64', 'libnettle4:amd64', 'ocl-icd-libopencl1:amd64', 'libdrm-nouveau1a:amd64', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'libp11-kit0:amd64', 'libsoftware-license-perl', 'libpackage-stash-perl', 'libgomp1:amd64', 'libcr0', 'libthai0:amd64', 'libxml-writer-perl', 'hmmer', 'libmagic1:amd64', 'libplplot11', 'libwww-perl', 'apache2-mpm-worker', 'apache2.2-common', 'libmath-derivative-perl', 'libdevel-stacktrace-perl', 'libxml-sax-base-perl', 'libsasl2-modules-db:amd64', 'poppler-data', 'libopengl-perl', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'dialign-tx-data', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'libxml-dom-perl', 'openssl', 'fontconfig-config', 'libhwloc-plugins', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libhdf4-0-alt', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'fftw2', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'libalgorithm-munkres-perl', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'ncbi-blast+', 'clustalw', 'libncbi6:amd64', 'libcsiro0:amd64', 'libgvpr1', 'libgvpr2', 'libisccfg-export90', 'phyml', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'libglapi-mesa:amd64', 'libapache2-mod-perl2', 'libpackage-deprecationmanager-perl', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'libdrm-radeon1:amd64', 'fonts-liberation', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libxau6:amd64', 'libclass-load-perl', 'iproute2', 'krb5-locales', 'exonerate', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libnuma1:amd64', 'libparams-util-perl', 'iproute', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'apache2.2-bin', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libdrm-intel1:amd64', 'libgdbm3:amd64', 'fontconfig', 'libace-perl', 'infernal', 'libclass-c3-xs-perl', 'libpciaccess0:amd64', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libxext6:amd64', 'libbsd0:amd64', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'mafft', 'apache2-utils', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'libllvm3.5:amd64', 'libjpeg8:amd64', 'libtype-tiny-xs-perl', 'emboss-lib', 'libswitch-perl', 'libhttp-message-perl', 'libsub-exporter-perl', 'blast2', 'libio-sessiondata-perl', 'sgml-base', 'libhtml-parser-perl', 'libpod-readme-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libgnutls-deb0-28:amd64', 'libpangox-1.0-0:amd64', 'mime-support', 'libpango1.0-0:amd64', 'libvariable-magic-perl', 'libxcb-sync1:amd64', 'ncbi-data', 'libharfbuzz0b:amd64', 'pdl', 'perl-tk', 'libpangoft2-1.0-0:amd64', 'libxcb-present0:amd64', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libsm6:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'proj-data', 'libqsastime0:amd64', 'libsub-identify-perl', 'libio-socket-ip-perl', 'libpaper-utils', 'libxcb-glx0:amd64', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxt6:amd64', 'kalign', 'libffi6:amd64', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'freeglut3:amd64', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libffi5:amd64', 'libgl1-mesa-dri:amd64', 'libindirect-perl', 'libxml-regexp-perl', 'libjbig2dec0', 'samtools', 'libxtables10', 'libtiff4:amd64', 'probalign', 'libio-pty-perl', 'libpathplan4', 'libcrypt-rc4-perl', 'libcgraph6', 'libx11-xcb1:amd64', 'libyaml-syck-perl', 'libcgraph5', 'libibverbs1', 'libgvc5', 'libgvc6', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libxml-sax-expat-perl', 'libbit-vector-perl', 'libdbi-perl', 'libmailtools-perl', 't-coffee', 'libdist-checkconflicts-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'libxml-sax-writer-perl', 'libmultidimensional-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'libterm-readkey-perl', 'apache2-bin', 'libsystemd-login0:amd64', 'libedit2:amd64', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'shared-mime-info', 'libxml2:amd64', 'libsoap-lite-perl', 'libxi6:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libtree-dagnode-perl', 'tigr-glimmer', 'mustang', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'libperl5.20', 'libparams-classify-perl', 'dialign-tx', 'libclass-tiny-perl', 'libxml-twig-perl', 'libxdmcp6:amd64', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libxml-parser-perl', 'libregexp-common-perl', 'libclass-load-xs-perl', 'libgs9', 'libfreetype6:amd64', 'libxml-perl', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'libbsd-resource-perl', 'perl', 'libatm1:amd64', 'libxshmfence1:amd64', 'libhttp-daemon-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'netbase', 'libxrender1:amd64', 'libxaw7:amd64', 'libjbig0:amd64', 'libruby1.9.1', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-partialdump-perl', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libtxc-dxtn-s2tc0:amd64', 'libhttp-negotiate-perl', 'libopenmpi1.3', 'libunicode-map-perl', 'libopenmpi1.6', 'libaprutil1:amd64', 'file', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'libxfixes3:amd64', 'emboss-data', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libxcb-dri2-0:amd64', 'libsvg-perl', 'libdevel-caller-perl', 'liblwp-protocol-https-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'libsasl2-2:amd64', 'libcdt5', 'libcdt4', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl'] 5m4.0s DUMP: (Reading database ... 7976 files and directories currently installed.) Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed Removing libdrm-nouveau2:amd64 (2.4.58-2) ... Purging configuration files for libdrm-nouveau2:amd64 (2.4.58-2) ... dpkg: warning: ignoring request to remove libyaml-perl which isn't installed Removing libelf1:amd64 (0.159-4.2) ... Purging configuration files for libelf1:amd64 (0.159-4.2) ... dpkg: warning: ignoring request to remove emboss which isn't installed Removing libproj0 (4.8.0-5) ... Purging configuration files for libproj0 (4.8.0-5) ... Removing libpangoxft-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpangoxft-1.0-0:amd64 (1.36.8-3) ... Removing libargtable2-0 (12-1.1) ... Purging configuration files for libargtable2-0 (12-1.1) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u5) ... 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Purging configuration files for libdrm-nouveau1a:amd64 (2.4.40-1~deb7u2) ... Removing python (2.7.9-1) ... Purging configuration files for python (2.7.9-1) ... Removing libpango-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpango-1.0-0:amd64 (1.36.8-3) ... dpkg: warning: ignoring request to remove libio-html-perl which isn't installed Removing libp11-kit0:amd64 (0.20.7-1) ... Purging configuration files for libp11-kit0:amd64 (0.20.7-1) ... dpkg: warning: ignoring request to remove libsoftware-license-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-perl which isn't installed Removing libgomp1:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libgomp1:amd64 (4.9.2-10+deb8u1) ... Removing libcr0 (0.8.5-2.2) ... Purging configuration files for libcr0 (0.8.5-2.2) ... Removing libthai0:amd64 (0.1.21-1) ... 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Purging configuration files for apache2.2-common (2.4.10-10+deb8u12) ... dpkg: warning: ignoring request to remove libmath-derivative-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-stacktrace-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Removing poppler-data (0.4.7-1) ... Purging configuration files for poppler-data (0.4.7-1) ... dpkg: warning: ignoring request to remove libopengl-perl which isn't installed dpkg: warning: ignoring request to remove libgraph-perl which isn't installed dpkg: warning: ignoring request to remove libcpan-meta-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed Removing libxcb-shm0:amd64 (1.10-3+b1) ... 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Purging configuration files for libdrm-radeon1:amd64 (2.4.58-2) ... dpkg: warning: ignoring request to remove fonts-liberation which isn't installed dpkg: warning: ignoring request to remove libimport-into-perl which isn't installed dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't installed dpkg: warning: ignoring request to remove libpadwalker-perl which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed Removing libxau6:amd64 (1:1.0.8-1) ... Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... dpkg: warning: ignoring request to remove libclass-load-perl which isn't installed Removing iproute2 (3.16.0-2) ... 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Purging configuration files for mysql-common (5.5.60-0+deb8u1) ... dpkg: warning: ignoring request to remove libstrictures-perl which isn't installed dpkg: warning: ignoring request to remove libterm-ui-perl which isn't installed dpkg: warning: ignoring request to remove liblog-message-perl which isn't installed Removing apache2.2-bin (2.4.10-10+deb8u12) ... Purging configuration files for apache2.2-bin (2.4.10-10+deb8u12) ... Removing lynx-cur (2.8.9dev1-2+deb8u1) ... Purging configuration files for lynx-cur (2.8.9dev1-2+deb8u1) ... dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed Removing libdrm-intel1:amd64 (2.4.58-2) ... Purging configuration files for libdrm-intel1:amd64 (2.4.58-2) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Purging configuration files for libgdbm3:amd64 (1.8.3-13.1) ... Removing fontconfig (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig (2.11.0-6.3+deb8u1) ... dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove infernal which isn't installed dpkg: warning: ignoring request to remove libclass-c3-xs-perl which isn't installed Removing libpciaccess0:amd64 (0.13.2-3+b1) ... Purging configuration files for libpciaccess0:amd64 (0.13.2-3+b1) ... dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-c3-perl which isn't installed Removing libglib2.0-0:amd64 (2.42.1-1+b1) ... Purging configuration files for libglib2.0-0:amd64 (2.42.1-1+b1) ... Removing graphviz (2.38.0-7) ... Purging configuration files for graphviz (2.38.0-7) ... Removing libxext6:amd64 (2:1.3.3-1) ... Purging configuration files for libxext6:amd64 (2:1.3.3-1) ... Removing libbsd0:amd64 (0.7.0-2) ... Purging configuration files for libbsd0:amd64 (0.7.0-2) ... dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... dpkg: warning: ignoring request to remove liblexical-sealrequirehints-perl which isn't installed Removing libgnutls26:amd64 (2.12.20-8+deb7u5) ... Purging configuration files for libgnutls26:amd64 (2.12.20-8+deb7u5) ... dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove apache2-utils which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed Removing libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Purging configuration files for libgcrypt11:amd64 (1.5.0-5+deb7u4) ... dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed Removing libxdot4 (2.38.0-7) ... Purging configuration files for libxdot4 (2.38.0-7) ... dpkg: warning: ignoring request to remove libdevel-lexalias-perl which isn't installed Removing libllvm3.5:amd64 (1:3.5-10) ... Purging configuration files for libllvm3.5:amd64 (1:3.5-10) ... dpkg: warning: ignoring request to remove libjpeg8 which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-xs-perl which isn't installed Removing emboss-lib (6.6.0+dfsg-1) ... Purging configuration files for emboss-lib (6.6.0+dfsg-1) ... dpkg: warning: ignoring request to remove libswitch-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-perl which isn't installed Removing blast2 (1:2.2.26.20120620-8) ... Purging configuration files for blast2 (1:2.2.26.20120620-8) ... dpkg: warning: ignoring request to remove libio-sessiondata-perl which isn't installed Removing sgml-base (1.26+nmu4) ... Purging configuration files for sgml-base (1.26+nmu4) ... dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libpod-readme-perl which isn't installed Removing python2.7 (2.7.9-2+deb8u1) ... Purging configuration files for python2.7 (2.7.9-2+deb8u1) ... dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdate-manip-perl which isn't installed Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Purging configuration files for libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libpangox-1.0-0:amd64 (0.0.2-5) ... Purging configuration files for libpangox-1.0-0:amd64 (0.0.2-5) ... Removing mime-support (3.58) ... Purging configuration files for mime-support (3.58) ... dpkg: warning: ignoring request to remove libpango1.0-0 which isn't installed dpkg: warning: ignoring request to remove libvariable-magic-perl which isn't installed Removing libxcb-sync1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-sync1:amd64 (1.10-3+b1) ... Removing ncbi-data (6.1.20120620-8) ... Purging configuration files for ncbi-data (6.1.20120620-8) ... Removing libharfbuzz0b:amd64 (0.9.35-2) ... Purging configuration files for libharfbuzz0b:amd64 (0.9.35-2) ... Removing pdl (1:2.007-4) ... Purging configuration files for pdl (1:2.007-4) ... dpkg: warning: ignoring request to remove perl-tk which isn't installed Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Purging configuration files for libpangoft2-1.0-0:amd64 (1.36.8-3) ... Removing libxcb-present0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-present0:amd64 (1.10-3+b1) ... dpkg: warning: ignoring request to remove isc-dhcp-common which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Purging configuration files for libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed dpkg: warning: ignoring request to remove libxml-dom-xpath-perl which isn't installed Removing libsm6:amd64 (2:1.2.2-1+b1) ... Purging configuration files for libsm6:amd64 (2:1.2.2-1+b1) ... dpkg: warning: ignoring request to remove libdevel-globaldestruction-perl which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed Removing ifupdown (0.7.53.1) ... Purging configuration files for ifupdown (0.7.53.1) ... dpkg: warning: ignoring request to remove proj-data which isn't installed Removing libqsastime0:amd64 (5.10.0+dfsg-1) ... Purging configuration files for libqsastime0:amd64 (5.10.0+dfsg-1) ... dpkg: warning: ignoring request to remove libsub-identify-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ip-perl which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Removing libxcb-glx0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-glx0:amd64 (1.10-3+b1) ... Removing libpod-latex-perl (0.61-1) ... Purging configuration files for libpod-latex-perl (0.61-1) ... dpkg: warning: ignoring request to remove apache2-data which isn't installed dpkg: warning: ignoring request to remove libipc-run-perl which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-writeexcel-perl which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove libdata-optlist-perl which isn't installed dpkg: warning: ignoring request to remove libgs9-common which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove ttf-dejavu-core which isn't installed Removing libxt6:amd64 (1:1.1.4-1+b1) ... Purging configuration files for libxt6:amd64 (1:1.1.4-1+b1) ... Removing kalign (1:2.03+20110620-2) ... Purging configuration files for kalign (1:2.03+20110620-2) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... Removing libijs-0.35:amd64 (0.35-10) ... Purging configuration files for libijs-0.35:amd64 (0.35-10) ... dpkg: warning: ignoring request to remove libhtml-tableextract-perl which isn't installed Removing freeglut3:amd64 (2.8.1-2) ... Purging configuration files for freeglut3:amd64 (2.8.1-2) ... Removing libavahi-common3:amd64 (0.6.31-5) ... Purging configuration files for libavahi-common3:amd64 (0.6.31-5) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-render0:amd64 (1.10-3+b1) ... dpkg: warning: ignoring request to remove rename which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed Removing libffi5:amd64 (3.0.10-3) ... Purging configuration files for libffi5:amd64 (3.0.10-3) ... Removing libgl1-mesa-dri:amd64 (10.3.2-1+deb8u1) ... Purging configuration files for libgl1-mesa-dri:amd64 (10.3.2-1+deb8u1) ... dpkg: warning: ignoring request to remove libindirect-perl which isn't installed dpkg: warning: ignoring request to remove libxml-regexp-perl which isn't installed Removing libjbig2dec0 (0.13-4~deb8u2) ... Purging configuration files for libjbig2dec0 (0.13-4~deb8u2) ... Removing samtools (0.1.19-1) ... Purging configuration files for samtools (0.1.19-1) ... Removing libxtables10 (1.4.21-2+b1) ... Purging configuration files for libxtables10 (1.4.21-2+b1) ... Removing libtiff4:amd64 (3.9.6-11) ... Purging configuration files for libtiff4:amd64 (3.9.6-11) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove libio-pty-perl which isn't installed Removing libpathplan4 (2.38.0-7) ... Purging configuration files for libpathplan4 (2.38.0-7) ... dpkg: warning: ignoring request to remove libcrypt-rc4-perl which isn't installed Removing libcgraph6 (2.38.0-7) ... Purging configuration files for libcgraph6 (2.38.0-7) ... Removing libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Purging configuration files for libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... dpkg: warning: ignoring request to remove libyaml-syck-perl which isn't installed Removing libcgraph5 (2.26.3-14+deb7u2) ... Purging configuration files for libcgraph5 (2.26.3-14+deb7u2) ... Removing libibverbs1 (1.1.8-1.1) ... Purging configuration files for libibverbs1 (1.1.8-1.1) ... Removing libgvc5 (2.26.3-14+deb7u2) ... Purging configuration files for libgvc5 (2.26.3-14+deb7u2) ... Removing libgvc6 (2.38.0-7) ... Purging configuration files for libgvc6 (2.38.0-7) ... dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Removing libpaper1:amd64 (1.1.24+nmu4) ... Purging configuration files for libpaper1:amd64 (1.1.24+nmu4) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Purging configuration files for libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Purging configuration files for libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing javascript-common (11) ... Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed Removing python2.7-minimal (2.7.9-2+deb8u1) ... Purging configuration files for python2.7-minimal (2.7.9-2+deb8u1) ... Removing libcups2:amd64 (1.7.5-11+deb8u2) ... Purging configuration files for libcups2:amd64 (1.7.5-11+deb8u2) ... dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed dpkg: warning: ignoring request to remove libbit-vector-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove libdist-checkconflicts-perl which isn't installed Removing libdatrie1:amd64 (0.2.8-1) ... Purging configuration files for libdatrie1:amd64 (0.2.8-1) ... Removing libmodule-build-perl (0.421000-2+deb8u1) ... Purging configuration files for libmodule-build-perl (0.421000-2+deb8u1) ... Removing apache2 (2.4.10-10+deb8u12) ... Purging configuration files for apache2 (2.4.10-10+deb8u12) ... dpkg: warning: while removing apache2, directory '/var/www' not empty so not removed Removing libxcb1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb1:amd64 (1.10-3+b1) ... dpkg: warning: ignoring request to remove libxml-sax-writer-perl which isn't installed dpkg: warning: ignoring request to remove libmultidimensional-perl which isn't installed dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove libbareword-filehandles-perl which isn't installed dpkg: warning: ignoring request to remove libtext-soundex-perl which isn't installed Removing ca-certificates (20141019+deb8u3) ... Purging configuration files for ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed Removing apache2-bin (2.4.10-10+deb8u12) ... Purging configuration files for apache2-bin (2.4.10-10+deb8u12) ... Removing libsystemd-login0:amd64 (215-17+deb8u7) ... Purging configuration files for libsystemd-login0:amd64 (215-17+deb8u7) ... Removing libedit2:amd64 (3.1-20140620-2) ... Purging configuration files for libedit2:amd64 (3.1-20140620-2) ... dpkg: warning: ignoring request to remove liblog-message-simple-perl which isn't installed Removing libavahi-client3:amd64 (0.6.31-5) ... Purging configuration files for libavahi-client3:amd64 (0.6.31-5) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Purging configuration files for libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing shared-mime-info (1.3-1) ... Purging configuration files for shared-mime-info (1.3-1) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Purging configuration files for libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed Removing libxi6:amd64 (2:1.7.4-1+deb8u1) ... Purging configuration files for libxi6:amd64 (2:1.7.4-1+deb8u1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Purging configuration files for libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Removing libglu1-mesa:amd64 (9.0.0-2) ... Purging configuration files for libglu1-mesa:amd64 (9.0.0-2) ... dpkg: warning: ignoring request to remove libtree-dagnode-perl which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-xs-perl which isn't installed Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove libperl5.20 which isn't installed dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove libclass-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+b1) ... dpkg: warning: ignoring request to remove libsvg-graph-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libregexp-common-perl which isn't installed dpkg: warning: ignoring request to remove libclass-load-xs-perl which isn't installed Removing libgs9 (9.06~dfsg-2+deb8u7) ... Purging configuration files for libgs9 (9.06~dfsg-2+deb8u7) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Purging configuration files for libfreetype6:amd64 (2.5.2-3+deb8u2) ... dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libpostscript-perl which isn't installed Removing xml-core (0.13+nmu2) ... Purging configuration files for xml-core (0.13+nmu2) ... dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove perl which isn't installed Removing libatm1:amd64 (1:2.5.1-1.5) ... Purging configuration files for libatm1:amd64 (1:2.5.1-1.5) ... Removing libxshmfence1:amd64 (1.1-4) ... Purging configuration files for libxshmfence1:amd64 (1.1-4) ... dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove ruby2.1 which isn't installed Removing x11-common (1:7.7+7) ... Purging configuration files for x11-common (1:7.7+7) ... dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed Removing liblua5.1-0:amd64 (5.1.5-7.1) ... Purging configuration files for liblua5.1-0:amd64 (5.1.5-7.1) ... Removing netbase (5.3) ... Purging configuration files for netbase (5.3) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Purging configuration files for libxrender1:amd64 (1:0.9.8-1+b1) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Purging configuration files for libxaw7:amd64 (2:1.0.12-2+b1) ... Removing libjbig0:amd64 (2.1-3.1) ... Purging configuration files for libjbig0:amd64 (2.1-3.1) ... Removing libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Purging configuration files for libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove librole-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed Removing libice6:amd64 (2:1.0.9-1+b1) ... Purging configuration files for libice6:amd64 (2:1.0.9-1+b1) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove libdevel-partialdump-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove lynx which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed Removing libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... Purging configuration files for libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed Removing libopenmpi1.3 (1.4.5-1) ... Purging configuration files for libopenmpi1.3 (1.4.5-1) ... dpkg: warning: ignoring request to remove libunicode-map-perl which isn't installed Removing libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Purging configuration files for libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Removing libaprutil1:amd64 (1.5.4-1) ... Purging configuration files for libaprutil1:amd64 (1.5.4-1) ... dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Purging configuration files for libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed Removing perl-modules (5.20.2-3+deb8u11) ... Purging configuration files for perl-modules (5.20.2-3+deb8u11) ... Removing libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Purging configuration files for libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed Removing libxcb-dri2-0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-dri2-0:amd64 (1.10-3+b1) ... dpkg: warning: ignoring request to remove libsvg-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-caller-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libsort-naturally-perl which isn't installed Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Purging configuration files for libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libcdt5 (2.38.0-7) ... Purging configuration files for libcdt5 (2.38.0-7) ... Removing libcdt4 (2.26.3-14+deb7u2) ... Purging configuration files for libcdt4 (2.26.3-14+deb7u2) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libspreadsheet-parseexcel-perl which isn't installed 5m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg', '--purge', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libdrm-nouveau2:amd64', 'libyaml-perl', 'libelf1:amd64', 'emboss', 'libproj0', 'libpangoxft-1.0-0:amd64', 'libargtable2-0', 'libtiff5:amd64', 'libclass-c3-perl', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libmro-compat-perl', 'libxdamage1:amd64', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'libpq5:amd64', 'libkrb5-3:amd64', 'libtext-template-perl', 'libtorque2', 'libfile-listing-perl', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'libmath-spline-perl', 'libxml-sax-perl', 'libprocps0:amd64', 'dialign', 'libsub-install-perl', 'libbio-perl-perl', 'libclone-perl', 'ruby1.9.1', 'libdrm2:amd64', 'libdbd-pg-perl', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libhwloc5:amd64', 'libgraph4', 'libgd3:amd64', 'libgsl0ldbl', 'libhtml-format-perl', 'libeval-closure-perl', 'libossp-uuid-perl', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'wise-data', 'libipc-sharelite-perl', 'libtype-tiny-perl', 'libset-scalar-perl', 'libgl1-mesa-glx:amd64', 'python-minimal', 'libxft2:amd64', 'bwa', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'bioperl-run', 'libhtml-tagset-perl', 'ssl-cert', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libqhull6:amd64', 'libcupsimage2:amd64', 'libnamespace-clean-perl', 'libdigest-perl-md5-perl', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'ttf-liberation', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libnet-smtp-ssl-perl', 'libfreezethaw-perl', 'libfile-slurp-tiny-perl', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'libwww-robotrules-perl', 'libxcb-dri3-0:amd64', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libarchive-extract-perl', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'libpython2.7-minimal:amd64', 'libpixman-1-0:amd64', 'proda', 'bedtools', 'primer3', 'libsocket-perl', 'libjasper1:amd64', 'libmodule-signature-perl', 'libmodule-runtime-perl', 'maq', 'libxxf86vm1:amd64', 'libxslt1.1:amd64', 'libqhull5', 'libmysqlclient18:amd64', 'libidn11:amd64', 'libxml-libxslt-perl', 'libjcode-pm-perl', 'libkrb5support0:amd64', 'libmoose-perl', 'libterm-readline-gnu-perl', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libmodule-runtime-conflicts-perl', 'libjs-jquery', 'libheap-perl', 'libbio-asn1-entrezgene-perl', 'libgmp10:amd64', 'libssl1.0.0:amd64', 'libnettle4:amd64', 'ocl-icd-libopencl1:amd64', 'libdrm-nouveau1a:amd64', 'python', 'libpango-1.0-0:amd64', 'libio-html-perl', 'libp11-kit0:amd64', 'libsoftware-license-perl', 'libpackage-stash-perl', 'libgomp1:amd64', 'libcr0', 'libthai0:amd64', 'libxml-writer-perl', 'hmmer', 'libmagic1:amd64', 'libplplot11', 'libwww-perl', 'apache2-mpm-worker', 'apache2.2-common', 'libmath-derivative-perl', 'libdevel-stacktrace-perl', 'libxml-sax-base-perl', 'libsasl2-modules-db:amd64', 'poppler-data', 'libopengl-perl', 'libgraph-perl', 'libcpan-meta-perl', 'libhtml-form-perl', 'dialign-tx-data', 'libxcb-shm0:amd64', 'libclass-inspector-perl', 'libxml-dom-perl', 'openssl', 'fontconfig-config', 'libhwloc-plugins', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libhdf4-0-alt', 'libthai-data', 'libdata-section-perl', 'libxml-simple-perl', 'prank', 'libalgorithm-diff-xs-perl', 'libxml-filter-buffertext-perl', 'gsfonts', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'fftw2', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'libalgorithm-munkres-perl', 'libhttp-cookies-perl', 'libfcgi-perl', 'libmodule-pluggable-perl', 'ncbi-blast+', 'clustalw', 'libncbi6:amd64', 'libcsiro0:amd64', 'libgvpr1', 'libgvpr2', 'libisccfg-export90', 'phyml', 'clustalo', 'libdate-calc-perl', 'libb-hooks-endofscope-perl', 'libglapi-mesa:amd64', 'libapache2-mod-perl2', 'libpackage-deprecationmanager-perl', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'libdrm-radeon1:amd64', 'fonts-liberation', 'libimport-into-perl', 'libparse-recdescent-perl', 'libpadwalker-perl', 'libnet-http-perl', 'libxau6:amd64', 'libclass-load-perl', 'iproute2', 'krb5-locales', 'exonerate', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'amap-align', 'libnuma1:amd64', 'libparams-util-perl', 'iproute', 'mysql-common', 'libstrictures-perl', 'libterm-ui-perl', 'liblog-message-perl', 'apache2.2-bin', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'libdrm-intel1:amd64', 'libgdbm3:amd64', 'fontconfig', 'libace-perl', 'infernal', 'libclass-c3-xs-perl', 'libpciaccess0:amd64', 'liburi-perl', 'libalgorithm-c3-perl', 'libglib2.0-0:amd64', 'graphviz', 'libxext6:amd64', 'libbsd0:amd64', 'libxml-namespacesupport-perl', 'libk5crypto3:amd64', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'mafft', 'apache2-utils', 'libio-socket-ssl-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'libllvm3.5:amd64', 'libjpeg8:amd64', 'libtype-tiny-xs-perl', 'emboss-lib', 'libswitch-perl', 'libhttp-message-perl', 'libsub-exporter-perl', 'blast2', 'libio-sessiondata-perl', 'sgml-base', 'libhtml-parser-perl', 'libpod-readme-perl', 'python2.7', 'libdata-stag-perl', 'libdate-manip-perl', 'libgnutls-deb0-28:amd64', 'libpangox-1.0-0:amd64', 'mime-support', 'libpango1.0-0:amd64', 'libvariable-magic-perl', 'libxcb-sync1:amd64', 'ncbi-data', 'libharfbuzz0b:amd64', 'pdl', 'perl-tk', 'libpangoft2-1.0-0:amd64', 'libxcb-present0:amd64', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libfontconfig1:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libsm6:amd64', 'libdevel-globaldestruction-perl', 'poa', 'ifupdown', 'proj-data', 'libqsastime0:amd64', 'libsub-identify-perl', 'libio-socket-ip-perl', 'libpaper-utils', 'libxcb-glx0:amd64', 'libpod-latex-perl', 'apache2-data', 'libipc-run-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxt6:amd64', 'kalign', 'libffi6:amd64', 'libijs-0.35:amd64', 'libhtml-tableextract-perl', 'freeglut3:amd64', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'rename', 'libgd-perl', 'libsub-exporter-progressive-perl', 'libffi5:amd64', 'libgl1-mesa-dri:amd64', 'libindirect-perl', 'libxml-regexp-perl', 'libjbig2dec0', 'samtools', 'libxtables10', 'libtiff4:amd64', 'probalign', 'libio-pty-perl', 'libpathplan4', 'libcrypt-rc4-perl', 'libcgraph6', 'libx11-xcb1:amd64', 'libyaml-syck-perl', 'libcgraph5', 'libibverbs1', 'libgvc5', 'libgvc6', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'libhttp-date-perl', 'python2.7-minimal', 'libcups2:amd64', 'muscle', 'libexporter-tiny-perl', 'libxml-sax-expat-perl', 'libbit-vector-perl', 'libdbi-perl', 'libmailtools-perl', 't-coffee', 'libdist-checkconflicts-perl', 'libdatrie1:amd64', 'libmodule-build-perl', 'apache2', 'libxcb1:amd64', 'libxml-sax-writer-perl', 'libmultidimensional-perl', 'sim4', 'libbareword-filehandles-perl', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'libterm-readkey-perl', 'apache2-bin', 'libsystemd-login0:amd64', 'libedit2:amd64', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'shared-mime-info', 'libxml2:amd64', 'libsoap-lite-perl', 'libxi6:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libtree-dagnode-perl', 'tigr-glimmer', 'mustang', 'libpackage-stash-xs-perl', 'libquadmath0:amd64', 'libperl5.20', 'libparams-classify-perl', 'dialign-tx', 'libclass-tiny-perl', 'libxml-twig-perl', 'libxdmcp6:amd64', 'libsvg-graph-perl', 'libcgi-fast-perl', 'probcons', 'libxml-parser-perl', 'libregexp-common-perl', 'libclass-load-xs-perl', 'libgs9', 'libfreetype6:amd64', 'libxml-perl', 'libpostscript-perl', 'xml-core', 'libtie-ixhash-perl', 'libbsd-resource-perl', 'perl', 'libatm1:amd64', 'libxshmfence1:amd64', 'libhttp-daemon-perl', 'ruby2.1', 'x11-common', 'libdbd-mysql-perl', 'liblua5.1-0:amd64', 'netbase', 'libxrender1:amd64', 'libxaw7:amd64', 'libjbig0:amd64', 'libruby1.9.1', 'libbio-perl-run-perl', 'libtask-weaken-perl', 'librole-tiny-perl', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'libdevel-partialdump-perl', 'libdevel-symdump-perl', 'lynx', 'libio-string-perl', 'libalgorithm-diff-perl', 'libclass-method-modifiers-perl', 'libx11-data', 'libtxc-dxtn-s2tc0:amd64', 'libhttp-negotiate-perl', 'libopenmpi1.3', 'libunicode-map-perl', 'libopenmpi1.6', 'libaprutil1:amd64', 'file', 'libxml-xpath-perl', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'libxfixes3:amd64', 'emboss-data', 'libtimedate-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libxcb-dri2-0:amd64', 'libsvg-perl', 'libdevel-caller-perl', 'liblwp-protocol-https-perl', 'libmodule-implementation-perl', 'libsort-naturally-perl', 'libsasl2-2:amd64', 'libcdt5', 'libcdt4', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl'] 5m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg', '--purge', 'libtfbs-perl'] 5m4.1s DUMP: dpkg: warning: ignoring request to remove libtfbs-perl which isn't installed 5m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg', '--purge', 'libtfbs-perl'] 5m4.1s INFO: Running scripts post_purge 5m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_purge_exceptions'] 5m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_purge_exceptions'] 5m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg', '--purge', '--pending'] 5m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg', '--purge', '--pending'] 5m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg', '--remove', '--pending'] 5m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg', '--remove', '--pending'] 5m4.1s INFO: Running scripts post_test 5m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_test_exceptions'] 5m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'tmp/scripts/post_test_exceptions'] 5m4.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 5m4.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 5m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg-divert', '--list'] 5m4.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 5m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'dpkg-divert', '--list'] 5m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', 'clean'] 5m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxPPtK8', 'apt-get', 'clean'] 5m4.8s DEBUG: Recording chroot state 5m6.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/run/shm'] 5m6.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/run/shm'] 5m6.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/console'] 5m6.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/console'] 5m6.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/ptmx'] 5m6.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/ptmx'] 5m6.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/pts'] 5m6.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/dev/pts'] 5m6.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/proc'] 5m6.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxPPtK8/proc'] 5m6.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 5m6.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxPPtK8'] 5m6.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpxPPtK8 5m6.5s INFO: PASS: Upgrading between Debian distributions. 5m6.5s INFO: PASS: All tests. 5m6.5s INFO: piuparts run ends. ret=0 End: 2019-04-27 10:49:27 UTC