Start: 2018-11-14 16:06:23 UTC [wheezy] Package: med-cloud Source: debian-med Version: 1.13.2 Installed-Size: 62 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-tasks (= 1.13.2), med-config (= 1.13.2) Recommends: autodock, clustalw, python-cogent, raster3d Suggests: bagphenotype, clustalw-mpi, r-other-valdar-bagphenotype.library Description: Debian Med bioinformatics applications usable in cloud computing Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: misc Priority: extra Filename: pool/main/d/debian-med/med-cloud_1.13.2_all.deb Size: 10328 MD5sum: a3a62034edba0a7157ea21ee803e4943 SHA1: 3dba5602fe35a8ba2f2259d2797e11961576cb9c SHA256: 1d4bb0b35a1bbf2e64f2134ea972046380279ddf2af0cbd86092c03138bc1980 [jessie] Package: med-cloud Source: debian-med Version: 2.0 Installed-Size: 62 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-tasks (= 2.0), med-config (= 2.0) Recommends: acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, anfo, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, biomaj, bioperl, bioperl-run, biosquid, blast2, bowtie, bowtie2, boxshade, bwa, cain, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, concavity, datamash, discosnp, disulfinder, dnaclust, dssp, fastdnaml, fastlink, fastqc, fasttree, fastx-toolkit, filo, fitgcp, flexbar, freecontact, gasic, genometools, giira, grinder, idba, infernal, kissplice, last-align, loki, macs, mapsembler2, maq, melting, minia, mipe, mira-assembler, mothur, ncbi-epcr, ncbi-tools-bin, ncoils, parsinsert, perm, phyml, phyutility, picard-tools, plink, primer3, python-cogent, rnahybrid, rtax, samtools, smalt, ssake, tophat, velvet Suggests: abyss, bagpipe, cufflinks Description: Debian Med bioinformatics applications usable in cloud computing Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: misc Priority: extra Filename: pool/main/d/debian-med/med-cloud_2.0_all.deb Size: 12626 MD5sum: 5438d9d8a05ad2b2f9cb232353c11e84 SHA1: ad9c6bec2b1c85762067b095cca812dfe532803b SHA256: d26fbc16c0666a65fe6895f37f6851940fc247726cbc11260c7f49f182f77c42 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B reference-chroot-metadata.dat --apt med-cloud=2.0 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.94~201810311648~0.93-14-gae52ab48 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B reference-chroot-metadata.dat --apt med-cloud=2.0 0m0.0s INFO: Running on: Linux piu-slave-bm-a 4.9.0-8-amd64 #1 SMP Debian 4.9.130-2 (2018-10-27) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpTkiYQe 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpTkiYQe 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/run/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/run/shm'] 0m1.8s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ wheezy main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpTkiYQe/tmp/scripts/ 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpTkiYQe/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', 'update'] 0m4.6s DUMP: Hit http://mirror.bm.debian.org wheezy Release.gpg Hit http://mirror.bm.debian.org wheezy Release Hit http://mirror.bm.debian.org wheezy/main amd64 Packages Hit http://mirror.bm.debian.org wheezy/main Translation-en Reading package lists... 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', 'update'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', '-yf', 'dist-upgrade'] 0m5.1s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', '-yf', 'dist-upgrade'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.6s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.6s INFO: Running scripts post_setup 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_dummy_users'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_dummy_users'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_experimental'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_experimental'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_forbid_home'] 0m7.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_forbid_home'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m8.7s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: ucf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 70.8 kB of archives. After this operation, 236 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.8 kB in 0s (2877 kB/s) Selecting previously unselected package ucf. (Reading database ... 6639 files and directories currently installed.) Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up ucf (3.0025+nmu3) ... 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_minimize'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_minimize'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_zz_backports'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_setup_zz_backports'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.8s DUMP: install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.8s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m9.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 0m11.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 0m11.0s INFO: Running scripts is_testable 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/is_testable_uninstallable'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/is_testable_uninstallable'] 0m11.0s INFO: Running scripts pre_test 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_test_exceptions'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_test_exceptions'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_test_root_password'] 0m11.1s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_test_root_password'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 0m11.1s DUMP: Package: med-cloud Source: debian-med Version: 1.13.2 Installed-Size: 62 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-tasks (= 1.13.2), med-config (= 1.13.2) Recommends: autodock, clustalw, python-cogent, raster3d Suggests: bagphenotype, clustalw-mpi, r-other-valdar-bagphenotype.library Description-en: Debian Med bioinformatics applications usable in cloud computing This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited. Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: misc Priority: extra Filename: pool/main/d/debian-med/med-cloud_1.13.2_all.deb Size: 10328 MD5sum: a3a62034edba0a7157ea21ee803e4943 SHA1: 3dba5602fe35a8ba2f2259d2797e11961576cb9c SHA256: 1d4bb0b35a1bbf2e64f2134ea972046380279ddf2af0cbd86092c03138bc1980 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 0m11.1s INFO: apt-cache knows about the following packages: med-cloud 0m11.1s INFO: Running scripts pre_install 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_database-server'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_database-server'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_exceptions'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_exceptions'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_extras'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_extras'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'policy'] 0m11.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ wheezy/main Translation-en 500 http://mirror.bm.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'policy'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'policy', 'med-cloud'] 0m11.3s DUMP: med-cloud: Installed: (none) Candidate: 1.13.2 Version table: 1.13.2 0 500 http://mirror.bm.debian.org/debian/ wheezy/main amd64 Packages 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'policy', 'med-cloud'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', '-y', 'install', 'med-cloud'] 0m48.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser autodock blends-common clustalw dbus dmidecode file fontconfig fontconfig-config fonts-droid ghostscript gsfonts hicolor-icon-theme ifupdown imagemagick imagemagick-common iproute javascript-common krb5-locales laptop-detect libatm1 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcairo2 libcap2 libclass-isa-perl libcroco3 libcups2 libcupsimage2 libdatrie1 libdbus-1-3 libdjvulibre-text libdjvulibre21 libexiv2-12 libexpat1 libffi5 libfontconfig1 libfreetype6 libgcrypt11 libgd2-xpm libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libglib2.0-data libgnutls26 libgomp1 libgpg-error0 libgpm2 libgs9 libgs9-common libgssapi-krb5-2 libice6 libidn11 libijs-0.35 libilmbase6 libjasper1 libjbig0 libjbig2dec0 libjpeg8 libjs-jquery libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms1 liblcms2-2 liblensfun-data liblensfun0 liblqr-1-0 libltdl7 libmagic1 libmagickcore5 libmagickcore5-extra libmagickwand5 libncursesw5 libnetpbm10 libopenexr6 libp11-kit0 libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpixman-1-0 libpng12-0 libquadmath0 librsvg2-2 librsvg2-common libsm6 libsqlite3-0 libssl1.0.0 libswitch-perl libsystemd-login0 libtasn1-3 libthai-data libthai0 libtiff4 libwmf0.2-7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxpm4 libxrender1 libxt6 med-config med-tasks menu mime-support netbase netpbm perl perl-modules poppler-data python python-cogent python-minimal python-numpy python-support python2.6 python2.6-minimal python2.7 python2.7-minimal raster3d sgml-base shared-mime-info tasksel tasksel-data ttf-dejavu-core ufraw-batch wwwconfig-common x11-common xml-core Suggested packages: autogrid autodocktools blends-doc clustalx seaview dbus-x11 ghostscript-cups ghostscript-x hpijs isc-dhcp-client dhcp-client ppp rdnssd net-tools imagemagick-doc autotrace cups-bsd lpr lprng curl enscript ffmpeg gimp gnuplot grads groff-base hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig xdg-utils iproute-doc apache2 httpd cups-common exiv2 rng-tools libgd-tools gpm krb5-doc krb5-user libjasper-runtime liblcms-utils liblcms2-utils ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp librsvg2-bin bagphenotype clustalw-mpi r-other-valdar-bagphenotype.library menu-l10n gksu kdebase-bin kdebase-runtime ktsuss sux perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make libpod-plainer-perl poppler-utils fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-unfonts-core python-doc python-tk python-numpy-doc python-numpy-dbg python-nose python-dev gfortran gcc python2.6-doc binutils binfmt-support python2.7-doc raster3d-doc sgml-base-doc ufraw mysql-client postgresql-client debhelper The following NEW packages will be installed: adduser autodock blends-common clustalw dbus dmidecode file fontconfig fontconfig-config fonts-droid ghostscript gsfonts hicolor-icon-theme ifupdown imagemagick imagemagick-common iproute javascript-common krb5-locales laptop-detect libatm1 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcairo2 libcap2 libclass-isa-perl libcroco3 libcups2 libcupsimage2 libdatrie1 libdbus-1-3 libdjvulibre-text libdjvulibre21 libexiv2-12 libexpat1 libffi5 libfontconfig1 libfreetype6 libgcrypt11 libgd2-xpm libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libglib2.0-data libgnutls26 libgomp1 libgpg-error0 libgpm2 libgs9 libgs9-common libgssapi-krb5-2 libice6 libidn11 libijs-0.35 libilmbase6 libjasper1 libjbig0 libjbig2dec0 libjpeg8 libjs-jquery libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms1 liblcms2-2 liblensfun-data liblensfun0 liblqr-1-0 libltdl7 libmagic1 libmagickcore5 libmagickcore5-extra libmagickwand5 libncursesw5 libnetpbm10 libopenexr6 libp11-kit0 libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpixman-1-0 libpng12-0 libquadmath0 librsvg2-2 librsvg2-common libsm6 libsqlite3-0 libssl1.0.0 libswitch-perl libsystemd-login0 libtasn1-3 libthai-data libthai0 libtiff4 libwmf0.2-7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxpm4 libxrender1 libxt6 med-cloud med-config med-tasks menu mime-support netbase netpbm perl perl-modules poppler-data python python-cogent python-minimal python-numpy python-support python2.6 python2.6-minimal python2.7 python2.7-minimal raster3d sgml-base shared-mime-info tasksel tasksel-data ttf-dejavu-core ufraw-batch wwwconfig-common x11-common xml-core 0 upgraded, 145 newly installed, 0 to remove and 0 not upgraded. Need to get 71.4 MB of archives. After this operation, 223 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ wheezy/main iproute amd64 20120521-3+b3 [459 kB] Get:2 http://mirror.bm.debian.org/debian/ wheezy/main ifupdown amd64 0.7.8 [64.9 kB] Get:3 http://mirror.bm.debian.org/debian/ wheezy/main libgdbm3 amd64 1.8.3-11 [46.9 kB] Get:4 http://mirror.bm.debian.org/debian/ wheezy/main libncursesw5 amd64 5.9-10 [141 kB] Get:5 http://mirror.bm.debian.org/debian/ wheezy/main libssl1.0.0 amd64 1.0.1e-2+deb7u20 [1263 kB] Get:6 http://mirror.bm.debian.org/debian/ wheezy/main tasksel-data all 3.14.1 [20.6 kB] Get:7 http://mirror.bm.debian.org/debian/ wheezy/main tasksel all 3.14.1 [94.8 kB] Get:8 http://mirror.bm.debian.org/debian/ wheezy/main libcap2 amd64 1:2.22-1.2 [13.6 kB] Get:9 http://mirror.bm.debian.org/debian/ wheezy/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:10 http://mirror.bm.debian.org/debian/ wheezy/main libgcrypt11 amd64 1.5.0-5+deb7u4 [301 kB] Get:11 http://mirror.bm.debian.org/debian/ wheezy/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:12 http://mirror.bm.debian.org/debian/ wheezy/main libtasn1-3 amd64 2.13-2+deb7u2 [67.8 kB] Get:13 http://mirror.bm.debian.org/debian/ wheezy/main libgnutls26 amd64 2.12.20-8+deb7u5 [620 kB] Get:14 http://mirror.bm.debian.org/debian/ wheezy/main libgpm2 amd64 1.20.4-6 [35.8 kB] Get:15 http://mirror.bm.debian.org/debian/ wheezy/main libkeyutils1 amd64 1.5.5-3+deb7u1 [8664 B] Get:16 http://mirror.bm.debian.org/debian/ wheezy/main libkrb5support0 amd64 1.10.1+dfsg-5+deb7u7 [50.5 kB] Get:17 http://mirror.bm.debian.org/debian/ wheezy/main libk5crypto3 amd64 1.10.1+dfsg-5+deb7u7 [113 kB] Get:18 http://mirror.bm.debian.org/debian/ wheezy/main libkrb5-3 amd64 1.10.1+dfsg-5+deb7u7 [394 kB] Get:19 http://mirror.bm.debian.org/debian/ wheezy/main libgssapi-krb5-2 amd64 1.10.1+dfsg-5+deb7u7 [150 kB] Get:20 http://mirror.bm.debian.org/debian/ wheezy/main libidn11 amd64 1.25-2 [178 kB] Get:21 http://mirror.bm.debian.org/debian/ wheezy/main libmagic1 amd64 5.11-2+deb7u8 [205 kB] Get:22 http://mirror.bm.debian.org/debian/ wheezy/main libpcre3 amd64 1:8.30-5 [242 kB] Get:23 http://mirror.bm.debian.org/debian/ wheezy/main libsqlite3-0 amd64 3.7.13-1+deb7u2 [454 kB] Get:24 http://mirror.bm.debian.org/debian/ wheezy/main libxml2 amd64 2.8.0+dfsg1-7+wheezy5 [906 kB] Get:25 http://mirror.bm.debian.org/debian/ wheezy/main imagemagick-common all 8:6.7.7.10-5+deb7u4 [128 kB] Get:26 http://mirror.bm.debian.org/debian/ wheezy/main libatm1 amd64 1:2.5.1-1.5 [73.3 kB] Get:27 http://mirror.bm.debian.org/debian/ wheezy/main libavahi-common-data amd64 0.6.31-2 [135 kB] Get:28 http://mirror.bm.debian.org/debian/ wheezy/main libavahi-common3 amd64 0.6.31-2 [54.6 kB] Get:29 http://mirror.bm.debian.org/debian/ wheezy/main libdbus-1-3 amd64 1.6.8-1+deb7u6 [174 kB] Get:30 http://mirror.bm.debian.org/debian/ wheezy/main libavahi-client3 amd64 0.6.31-2 [59.5 kB] Get:31 http://mirror.bm.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:32 http://mirror.bm.debian.org/debian/ wheezy/main libfreetype6 amd64 2.4.9-1.1+deb7u3 [452 kB] Get:33 http://mirror.bm.debian.org/debian/ wheezy/main ttf-dejavu-core all 2.33-3 [1021 kB] Get:34 http://mirror.bm.debian.org/debian/ wheezy/main fontconfig-config all 2.9.0-7.1 [233 kB] Get:35 http://mirror.bm.debian.org/debian/ wheezy/main libfontconfig1 amd64 2.9.0-7.1 [300 kB] Get:36 http://mirror.bm.debian.org/debian/ wheezy/main libpixman-1-0 amd64 0.26.0-4+deb7u2 [427 kB] Get:37 http://mirror.bm.debian.org/debian/ wheezy/main libpng12-0 amd64 1.2.49-1+deb7u2 [191 kB] Get:38 http://mirror.bm.debian.org/debian/ wheezy/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:39 http://mirror.bm.debian.org/debian/ wheezy/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:40 http://mirror.bm.debian.org/debian/ wheezy/main libxcb1 amd64 1.8.1-2+deb7u1 [50.2 kB] Get:41 http://mirror.bm.debian.org/debian/ wheezy/main libx11-data all 2:1.5.0-1+deb7u2 [194 kB] Get:42 http://mirror.bm.debian.org/debian/ wheezy/main libx11-6 amd64 2:1.5.0-1+deb7u2 [901 kB] Get:43 http://mirror.bm.debian.org/debian/ wheezy/main libxcb-render0 amd64 1.8.1-2+deb7u1 [18.6 kB] Get:44 http://mirror.bm.debian.org/debian/ wheezy/main libxcb-shm0 amd64 1.8.1-2+deb7u1 [10.4 kB] Get:45 http://mirror.bm.debian.org/debian/ wheezy/main libxrender1 amd64 1:0.9.7-1+deb7u2 [32.9 kB] Get:46 http://mirror.bm.debian.org/debian/ wheezy/main libcairo2 amd64 1.12.2-3 [912 kB] Get:47 http://mirror.bm.debian.org/debian/ wheezy/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:48 http://mirror.bm.debian.org/debian/ wheezy/main libglib2.0-0 amd64 2.33.12+really2.32.4-5 [1838 kB] Get:49 http://mirror.bm.debian.org/debian/ wheezy/main libcroco3 amd64 0.6.6-2 [134 kB] Get:50 http://mirror.bm.debian.org/debian/ wheezy/main libcups2 amd64 1.5.3-5+deb7u6 [256 kB] Get:51 http://mirror.bm.debian.org/debian/ wheezy/main libjpeg8 amd64 8d-1+deb7u1 [138 kB] Get:52 http://mirror.bm.debian.org/debian/ wheezy/main libjbig0 amd64 2.0-2+deb7u1 [32.6 kB] Get:53 http://mirror.bm.debian.org/debian/ wheezy/main libtiff4 amd64 3.9.6-11 [202 kB] Get:54 http://mirror.bm.debian.org/debian/ wheezy/main libcupsimage2 amd64 1.5.3-5+deb7u6 [138 kB] Get:55 http://mirror.bm.debian.org/debian/ wheezy/main libdatrie1 amd64 0.2.5-3 [28.6 kB] Get:56 http://mirror.bm.debian.org/debian/ wheezy/main libdjvulibre-text all 3.5.25.3-1 [78.1 kB] Get:57 http://mirror.bm.debian.org/debian/ wheezy/main libdjvulibre21 amd64 3.5.25.3-1 [726 kB] Get:58 http://mirror.bm.debian.org/debian/ wheezy/main libxpm4 amd64 1:3.5.10-1 [49.4 kB] Get:59 http://mirror.bm.debian.org/debian/ wheezy/main libgd2-xpm amd64 2.0.36~rc1~dfsg-6.1+deb7u2 [234 kB] Get:60 http://mirror.bm.debian.org/debian/ wheezy/main libjasper1 amd64 1.900.1-13+deb7u4 [160 kB] Get:61 http://mirror.bm.debian.org/debian/ wheezy/main libgdk-pixbuf2.0-common all 2.26.1-1+deb7u3 [287 kB] Get:62 http://mirror.bm.debian.org/debian/ wheezy/main libgdk-pixbuf2.0-0 amd64 2.26.1-1+deb7u3 [160 kB] Get:63 http://mirror.bm.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:64 http://mirror.bm.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:65 http://mirror.bm.debian.org/debian/ wheezy/main libgomp1 amd64 4.7.2-5 [27.5 kB] Get:66 http://mirror.bm.debian.org/debian/ wheezy/main x11-common all 1:7.7+3~deb7u1 [284 kB] Get:67 http://mirror.bm.debian.org/debian/ wheezy/main libice6 amd64 2:1.0.8-2 [63.1 kB] Get:68 http://mirror.bm.debian.org/debian/ wheezy/main liblcms1 amd64 1.19.dfsg2-1.2+deb7u1 [113 kB] Get:69 http://mirror.bm.debian.org/debian/ wheezy/main liblcms2-2 amd64 2.2+git20110628-2.2+deb7u1 [144 kB] Get:70 http://mirror.bm.debian.org/debian/ wheezy/main liblqr-1-0 amd64 0.4.1-2 [29.9 kB] Get:71 http://mirror.bm.debian.org/debian/ wheezy/main libltdl7 amd64 2.4.2-1.1 [352 kB] Get:72 http://mirror.bm.debian.org/debian/ wheezy/main libsm6 amd64 2:1.2.1-2 [34.2 kB] Get:73 http://mirror.bm.debian.org/debian/ wheezy/main libxext6 amd64 2:1.3.1-2+deb7u1 [54.8 kB] Get:74 http://mirror.bm.debian.org/debian/ wheezy/main libxt6 amd64 1:1.1.3-1+deb7u1 [212 kB] Get:75 http://mirror.bm.debian.org/debian/ wheezy/main libmagickcore5 amd64 8:6.7.7.10-5+deb7u4 [2084 kB] Get:76 http://mirror.bm.debian.org/debian/ wheezy/main libilmbase6 amd64 1.0.1-4 [124 kB] Get:77 http://mirror.bm.debian.org/debian/ wheezy/main libmagickwand5 amd64 8:6.7.7.10-5+deb7u4 [462 kB] Get:78 http://mirror.bm.debian.org/debian/ wheezy/main libopenexr6 amd64 1.6.1-6 [249 kB] Get:79 http://mirror.bm.debian.org/debian/ wheezy/main libthai-data all 0.1.18-2 [154 kB] Get:80 http://mirror.bm.debian.org/debian/ wheezy/main libthai0 amd64 0.1.18-2 [42.3 kB] Get:81 http://mirror.bm.debian.org/debian/ wheezy/main libxft2 amd64 2.3.1-1 [61.0 kB] Get:82 http://mirror.bm.debian.org/debian/ wheezy/main fontconfig amd64 2.9.0-7.1 [348 kB] Get:83 http://mirror.bm.debian.org/debian/ wheezy/main libpango1.0-0 amd64 1.30.0-1 [461 kB] Get:84 http://mirror.bm.debian.org/debian/ wheezy/main librsvg2-2 amd64 2.36.1-2+deb7u1 [239 kB] Get:85 http://mirror.bm.debian.org/debian/ wheezy/main libwmf0.2-7 amd64 0.2.8.4-10.3+deb7u1 [193 kB] Get:86 http://mirror.bm.debian.org/debian/ wheezy/main libmagickcore5-extra amd64 8:6.7.7.10-5+deb7u4 [164 kB] Get:87 http://mirror.bm.debian.org/debian/ wheezy/main libpaper1 amd64 1.1.24+nmu2 [22.0 kB] Get:88 http://mirror.bm.debian.org/debian/ wheezy/main poppler-data all 0.4.5-10 [1479 kB] Get:89 http://mirror.bm.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:90 http://mirror.bm.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:91 http://mirror.bm.debian.org/debian/ wheezy/main perl-modules all 5.14.2-21+deb7u3 [3444 kB] Get:92 http://mirror.bm.debian.org/debian/ wheezy/main perl amd64 5.14.2-21+deb7u3 [4429 kB] Get:93 http://mirror.bm.debian.org/debian/ wheezy/main sgml-base all 1.26+nmu4 [14.6 kB] Get:94 http://mirror.bm.debian.org/debian/ wheezy/main libsystemd-login0 amd64 44-11+deb7u4 [29.5 kB] Get:95 http://mirror.bm.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:96 http://mirror.bm.debian.org/debian/ wheezy/main dmidecode amd64 2.11-9 [77.1 kB] Get:97 http://mirror.bm.debian.org/debian/ wheezy/main netbase all 5.0 [20.1 kB] Get:98 http://mirror.bm.debian.org/debian/ wheezy/main file amd64 5.11-2+deb7u8 [53.4 kB] Get:99 http://mirror.bm.debian.org/debian/ wheezy/main krb5-locales all 1.10.1+dfsg-5+deb7u7 [1504 kB] Get:100 http://mirror.bm.debian.org/debian/ wheezy/main mime-support all 3.52-1+deb7u1 [35.5 kB] Get:101 http://mirror.bm.debian.org/debian/ wheezy/main python2.7-minimal amd64 2.7.3-6+deb7u2 [1785 kB] Get:102 http://mirror.bm.debian.org/debian/ wheezy/main python2.7 amd64 2.7.3-6+deb7u2 [2728 kB] Get:103 http://mirror.bm.debian.org/debian/ wheezy/main python-minimal all 2.7.3-4+deb7u1 [42.8 kB] Get:104 http://mirror.bm.debian.org/debian/ wheezy/main python all 2.7.3-4+deb7u1 [181 kB] Get:105 http://mirror.bm.debian.org/debian/ wheezy/main python-support all 1.0.15 [33.6 kB] Get:106 http://mirror.bm.debian.org/debian/ wheezy/main python2.6-minimal amd64 2.6.8-1.1 [1547 kB] Get:107 http://mirror.bm.debian.org/debian/ wheezy/main autodock amd64 4.2.3-2 [186 kB] Get:108 http://mirror.bm.debian.org/debian/ wheezy/main menu amd64 2.1.46 [480 kB] Get:109 http://mirror.bm.debian.org/debian/ wheezy/main blends-common all 0.6.16.2 [23.4 kB] Get:110 http://mirror.bm.debian.org/debian/ wheezy/main clustalw amd64 2.1+lgpl-2 [346 kB] Get:111 http://mirror.bm.debian.org/debian/ wheezy/main dbus amd64 1.6.8-1+deb7u6 [404 kB] Get:112 http://mirror.bm.debian.org/debian/ wheezy/main fonts-droid all 20111207+git-1 [4312 kB] Get:113 http://mirror.bm.debian.org/debian/ wheezy/main libijs-0.35 amd64 0.35-8 [20.4 kB] Get:114 http://mirror.bm.debian.org/debian/ wheezy/main libjbig2dec0 amd64 0.11+20120125-1 [51.8 kB] Get:115 http://mirror.bm.debian.org/debian/ wheezy/main libgs9-common all 9.05~dfsg-6.3+deb7u2 [1977 kB] Get:116 http://mirror.bm.debian.org/debian/ wheezy/main libgs9 amd64 9.05~dfsg-6.3+deb7u2 [1844 kB] Get:117 http://mirror.bm.debian.org/debian/ wheezy/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2 [3364 kB] Get:118 http://mirror.bm.debian.org/debian/ wheezy/main ghostscript amd64 9.05~dfsg-6.3+deb7u2 [80.3 kB] Get:119 http://mirror.bm.debian.org/debian/ wheezy/main hicolor-icon-theme all 0.12-1 [11.7 kB] Get:120 http://mirror.bm.debian.org/debian/ wheezy/main imagemagick amd64 8:6.7.7.10-5+deb7u4 [285 kB] Get:121 http://mirror.bm.debian.org/debian/ wheezy/main wwwconfig-common all 0.2.2 [22.8 kB] Get:122 http://mirror.bm.debian.org/debian/ wheezy/main javascript-common all 7 [3810 B] Get:123 http://mirror.bm.debian.org/debian/ wheezy/main laptop-detect amd64 0.13.7 [5224 B] Get:124 http://mirror.bm.debian.org/debian/ wheezy/main libblas3 amd64 1.2.20110419-5 [293 kB] Get:125 http://mirror.bm.debian.org/debian/ wheezy/main libexiv2-12 amd64 0.23-1 [807 kB] Get:126 http://mirror.bm.debian.org/debian/ wheezy/main libglib2.0-data all 2.33.12+really2.32.4-5 [1607 kB] Get:127 http://mirror.bm.debian.org/debian/ wheezy/main libjs-jquery all 1.7.2+dfsg-1 [80.1 kB] Get:128 http://mirror.bm.debian.org/debian/ wheezy/main libjs-underscore all 1.1.6-1+deb7u1 [30.8 kB] Get:129 http://mirror.bm.debian.org/debian/ wheezy/main liblapack3 amd64 3.4.1+dfsg-1+deb70u1 [5036 kB] Get:130 http://mirror.bm.debian.org/debian/ wheezy/main libnetpbm10 amd64 2:10.0-15+b1 [94.4 kB] Get:131 http://mirror.bm.debian.org/debian/ wheezy/main libpaper-utils amd64 1.1.24+nmu2 [18.3 kB] Get:132 http://mirror.bm.debian.org/debian/ wheezy/main librsvg2-common amd64 2.36.1-2+deb7u1 [162 kB] Get:133 http://mirror.bm.debian.org/debian/ wheezy/main netpbm amd64 2:10.0-15+b1 [1349 kB] Get:134 http://mirror.bm.debian.org/debian/ wheezy/main python-numpy amd64 1:1.6.2-1.2 [2632 kB] Get:135 http://mirror.bm.debian.org/debian/ wheezy/main python2.6 amd64 2.6.8-1.1 [2509 kB] Get:136 http://mirror.bm.debian.org/debian/ wheezy/main raster3d amd64 3.0-2-4 [212 kB] Get:137 http://mirror.bm.debian.org/debian/ wheezy/main shared-mime-info amd64 1.0-1+b1 [595 kB] Get:138 http://mirror.bm.debian.org/debian/ wheezy/main liblensfun-data all 0.2.5-2 [50.0 kB] Get:139 http://mirror.bm.debian.org/debian/ wheezy/main liblensfun0 amd64 0.2.5-2 [68.3 kB] Get:140 http://mirror.bm.debian.org/debian/ wheezy/main ufraw-batch amd64 0.18-2 [363 kB] Get:141 http://mirror.bm.debian.org/debian/ wheezy/main xml-core all 0.13+nmu2 [24.2 kB] Get:142 http://mirror.bm.debian.org/debian/ wheezy/main med-tasks all 1.13.2 [12.0 kB] Get:143 http://mirror.bm.debian.org/debian/ wheezy/main med-config all 1.13.2 [11.8 kB] Get:144 http://mirror.bm.debian.org/debian/ wheezy/main med-cloud all 1.13.2 [10.3 kB] Get:145 http://mirror.bm.debian.org/debian/ wheezy/main python-cogent amd64 1.5.1-2 [1898 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 71.4 MB in 6s (11.2 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Unpacking ufraw-batch (from .../ufraw-batch_0.18-2_amd64.deb) ... Selecting previously unselected package xml-core. Unpacking xml-core (from .../xml-core_0.13+nmu2_all.deb) ... Selecting previously unselected package med-tasks. Unpacking med-tasks (from .../med-tasks_1.13.2_all.deb) ... Selecting previously unselected package med-config. Unpacking med-config (from .../med-config_1.13.2_all.deb) ... Selecting previously unselected package med-cloud. Unpacking med-cloud (from .../med-cloud_1.13.2_all.deb) ... Selecting previously unselected package python-cogent. Unpacking python-cogent (from .../python-cogent_1.5.1-2_amd64.deb) ... Setting up iproute (20120521-3+b3) ... Setting up ifupdown (0.7.8) ... Creating /etc/network/interfaces. Setting up libgdbm3:amd64 (1.8.3-11) ... Setting up libncursesw5:amd64 (5.9-10) ... Setting up libssl1.0.0:amd64 (1.0.1e-2+deb7u20) ... Setting up libcap2:amd64 (1:2.22-1.2) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2+deb7u2) ... Setting up libgnutls26:amd64 (2.12.20-8+deb7u5) ... Setting up libgpm2:amd64 (1.20.4-6) ... Setting up libkeyutils1:amd64 (1.5.5-3+deb7u1) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libidn11:amd64 (1.25-2) ... Setting up libmagic1:amd64 (5.11-2+deb7u8) ... Setting up libpcre3:amd64 (1:8.30-5) ... Setting up libsqlite3-0:amd64 (3.7.13-1+deb7u2) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7+wheezy5) ... Setting up imagemagick-common (8:6.7.7.10-5+deb7u4) ... Setting up libatm1:amd64 (1:2.5.1-1.5) ... Setting up libavahi-common-data:amd64 (0.6.31-2) ... Setting up libavahi-common3:amd64 (0.6.31-2) ... Setting up libdbus-1-3:amd64 (1.6.8-1+deb7u6) ... Setting up libavahi-client3:amd64 (0.6.31-2) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u2) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u3) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1) ... Setting up libpixman-1-0:amd64 (0.26.0-4+deb7u2) ... Setting up libpng12-0:amd64 (1.2.49-1+deb7u2) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u2) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u2) ... Setting up libxcb-render0:amd64 (1.8.1-2+deb7u1) ... Setting up libxcb-shm0:amd64 (1.8.1-2+deb7u1) ... Setting up libxrender1:amd64 (1:0.9.7-1+deb7u2) ... Setting up libcairo2:amd64 (1.12.2-3) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libglib2.0-0:amd64 (2.33.12+really2.32.4-5) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.6-2) ... Setting up libcups2:amd64 (1.5.3-5+deb7u6) ... Setting up libjpeg8:amd64 (8d-1+deb7u1) ... Setting up libjbig0:amd64 (2.0-2+deb7u1) ... Setting up libtiff4:amd64 (3.9.6-11) ... Setting up libcupsimage2:amd64 (1.5.3-5+deb7u6) ... Setting up libdatrie1:amd64 (0.2.5-3) ... Setting up libdjvulibre-text (3.5.25.3-1) ... Setting up libdjvulibre21 (3.5.25.3-1) ... Setting up libxpm4:amd64 (1:3.5.10-1) ... Setting up libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Setting up libjasper1:amd64 (1.900.1-13+deb7u4) ... Setting up libgdk-pixbuf2.0-common (2.26.1-1+deb7u3) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.26.1-1+deb7u3) ... Setting up libquadmath0:amd64 (4.7.2-5) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up libgomp1:amd64 (4.7.2-5) ... Setting up x11-common (1:7.7+3~deb7u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up liblcms1:amd64 (1.19.dfsg2-1.2+deb7u1) ... Setting up liblcms2-2:amd64 (2.2+git20110628-2.2+deb7u1) ... Setting up liblqr-1-0:amd64 (0.4.1-2) ... Setting up libltdl7:amd64 (2.4.2-1.1) ... Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libxext6:amd64 (2:1.3.1-2+deb7u1) ... Setting up libxt6:amd64 (1:1.1.3-1+deb7u1) ... Setting up libmagickcore5:amd64 (8:6.7.7.10-5+deb7u4) ... Setting up libilmbase6 (1.0.1-4) ... Setting up libmagickwand5:amd64 (8:6.7.7.10-5+deb7u4) ... Setting up libopenexr6 (1.6.1-6) ... Setting up libthai-data (0.1.18-2) ... Setting up libthai0:amd64 (0.1.18-2) ... Setting up libxft2:amd64 (2.3.1-1) ... Setting up fontconfig (2.9.0-7.1) ... Regenerating fonts cache... done. Setting up libpango1.0-0:amd64 (1.30.0-1) ... Setting up librsvg2-2:amd64 (2.36.1-2+deb7u1) ... Setting up libwmf0.2-7:amd64 (0.2.8.4-10.3+deb7u1) ... Setting up libmagickcore5-extra:amd64 (8:6.7.7.10-5+deb7u4) ... Setting up libpaper1:amd64 (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up poppler-data (0.4.5-10) ... Setting up libclass-isa-perl (0.36-3) ... Setting up libsystemd-login0:amd64 (44-11+deb7u4) ... Setting up adduser (3.113+nmu3) ... Setting up dmidecode (2.11-9) ... Setting up netbase (5.0) ... Setting up file (5.11-2+deb7u8) ... Setting up krb5-locales (1.10.1+dfsg-5+deb7u7) ... Setting up mime-support (3.52-1+deb7u1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up python2.7-minimal (2.7.3-6+deb7u2) ... Setting up python2.7 (2.7.3-6+deb7u2) ... Setting up python-minimal (2.7.3-4+deb7u1) ... Setting up python (2.7.3-4+deb7u1) ... Setting up python-support (1.0.15) ... Setting up python2.6-minimal (2.6.8-1.1) ... Setting up autodock (4.2.3-2) ... ---------------------------------------------------------------------- ______ / \ / \ / \ \ /\ / \ / \ / \/ /\ \/ / \ /____\ AutoDock and AutoGrid are free software, distributed under the terms of the GNU General Public License 2 or later. This allows us to share the code and to be open for improvement from the whole scientific community. The development of the AutoDock suite is entirely funded by research grants. For that reason, we ask you to register at the AutoDock Registration page http://autodock.scripps.edu/downloads/autodock-registration in order to keep track of number of unique downloads, which we use to support the grant applications. Installing the Debian popularity-contest package is also encouraged. Thank you, and happy docking! The AutoDock Development Team If you plan to use AutoDock for commercial purposes we encourage donations to the Olson laboratory to help support further development of the AutoDock 4 suite of programs. Donation information provided on the download page. ---------------------------------------------------------------------- Setting up menu (2.1.46) ... Setting up clustalw (2.1+lgpl-2) ... Setting up dbus (1.6.8-1+deb7u6) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up fonts-droid (20111207+git-1) ... Setting up libijs-0.35 (0.35-8) ... Setting up libjbig2dec0 (0.11+20120125-1) ... Setting up libgs9-common (9.05~dfsg-6.3+deb7u2) ... Setting up libgs9 (9.05~dfsg-6.3+deb7u2) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Setting up ghostscript (9.05~dfsg-6.3+deb7u2) ... Setting up hicolor-icon-theme (0.12-1) ... Setting up imagemagick (8:6.7.7.10-5+deb7u4) ... update-alternatives: using /usr/bin/compare.im6 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/animate.im6 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/convert.im6 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/composite.im6 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/conjure.im6 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/import.im6 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/identify.im6 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/stream.im6 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/display.im6 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/montage.im6 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/mogrify.im6 to provide /usr/bin/mogrify (mogrify) in auto mode Setting up wwwconfig-common (0.2.2) ... Setting up javascript-common (7) ... Setting up laptop-detect (0.13.7) ... Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libexiv2-12 (0.23-1) ... Setting up libglib2.0-data (2.33.12+really2.32.4-5) ... Setting up libjs-jquery (1.7.2+dfsg-1) ... Setting up libjs-underscore (1.1.6-1+deb7u1) ... Setting up liblapack3 (3.4.1+dfsg-1+deb70u1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libnetpbm10 (2:10.0-15+b1) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up librsvg2-common:amd64 (2.36.1-2+deb7u1) ... Setting up netpbm (2:10.0-15+b1) ... Setting up python-numpy (1:1.6.2-1.2) ... Setting up python2.6 (2.6.8-1.1) ... Setting up raster3d (3.0-2-4) ... Setting up shared-mime-info (1.0-1+b1) ... Setting up liblensfun-data (0.2.5-2) ... Setting up liblensfun0 (0.2.5-2) ... Setting up ufraw-batch (0.18-2) ... Setting up python-cogent (1.5.1-2) ... Processing triggers for menu ... Setting up blends-common (0.6.16.2) ... Setting up med-config (1.13.2) ... Adding group `med' (GID 151) ... Done. Setting up tasksel (3.14.1) ... Setting up libswitch-perl (2.16-2) ... Setting up perl-modules (5.14.2-21+deb7u3) ... Setting up med-tasks (1.13.2) ... Setting up med-cloud (1.13.2) ... Setting up tasksel-data (3.14.1) ... Setting up perl (5.14.2-21+deb7u3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up sgml-base (1.26+nmu4) ... Setting up xml-core (0.13+nmu2) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 ... Processing triggers for python-support ... Processing triggers for menu ... Processing triggers for sgml-base ... 0m48.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', '-y', 'install', 'med-cloud'] 0m48.3s INFO: Running scripts post_install 0m48.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_install_exceptions'] 0m48.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_install_exceptions'] 0m48.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 0m50.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 0m50.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpTkiYQe to jessie 0m50.6s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ jessie main 0m50.6s INFO: Running scripts pre_distupgrade 0m50.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m50.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m50.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_distupgrade_exceptions'] 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_distupgrade_exceptions'] 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', 'update'] 0m55.8s DUMP: Get:1 http://mirror.bm.debian.org jessie Release.gpg [2420 B] Get:2 http://mirror.bm.debian.org jessie Release [148 kB] Get:3 http://mirror.bm.debian.org jessie/main amd64 Packages [6818 kB] Get:4 http://mirror.bm.debian.org jessie/main Translation-en [4581 kB] Fetched 11.5 MB in 2s (3894 kB/s) Reading package lists... 0m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', 'update'] 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', '-yf', 'dist-upgrade'] 9m19.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gcc-4.7-base The following NEW packages will be installed: acedb-other acl adwaita-icon-theme aevol alien-hunter altree amap-align ampliconnoise anfo ant ant-contrib ant-optional apache2-bin aragorn arden at-spi2-core autodock-vina autogrid bamtools bc bedtools binutils biomaj bioperl bioperl-run biosquid blast2 blt bowtie bowtie2 boxshade bwa ca-certificates ca-certificates-java cain cain-examples cain-solvers cassiopee cd-hit cdbfasta cgmanager circos circos-tools clearcut clonalframe clustalo colord colord-data concavity cpp cpp-4.9 cython datamash dconf-gsettings-backend dconf-service default-jre default-jre-headless dialign dialign-tx dialign-tx-data discosnp disulfinder disulfinder-data dmsetup dnaclust dssp dvipng emboss emboss-data emboss-lib exonerate fastdnaml fastlink fastqc fasttree fastx-toolkit filo fitgcp flexbar fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-oflb-asana-math fonts-sil-gentium fonts-sil-gentium-basic fonts-stix fonts-texgyre freecontact g++ g++-4.9 gasic gcc gcc-4.9 gcc-4.9-base genometools genometools-common giira glib-networking glib-networking-common glib-networking-services glpk-utils graphviz grinder gsettings-desktop-schemas hmmer idba imagemagick-6.q16 infernal init init-system-helpers iproute2 ipython isc-dhcp-client isc-dhcp-common java-common junit4 kalign kissplice last-align libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libamd2.3.1 libanfo0 libapache-dbi-perl libapache-pom-java libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libart-2.0-2 libasan1 libasound2 libasound2-data libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatlas3-base libatomic1 libatspi2.0-0 libaudio2 libaudit-common libaudit1 libauthen-sasl-perl libaxis-java libb-hooks-op-check-perl libbambamc0 libbamtools2.3.0 libbareword-filehandles-perl libbcprov-java libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-common libboost-filesystem1.55.0 libboost-iostreams1.55.0 libboost-program-options1.55.0 libboost-regex1.55.0 libboost-serialization1.55.0 libboost-system1.55.0 libboost-thread1.55.0 libbsd-resource-perl libbsd0 libbytecode-java libc-dev-bin libc6-dev libcache-cache-perl libcairo-gobject2 libcanberra-gtk3-0 libcanberra-gtk3-module libcanberra0 libcap-ng0 libcap2-bin libcarp-always-perl libcarp-clan-perl libcassie1 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgmanager0 libcgraph6 libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcloog-isl4 libcofoja-java libcolamd2.8.0 libcolord2 libcolorhug2 libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-jexl2-java libcommons-lang-java libcommons-logging-java libcommons-math3-java libcommons-net2-java libcommons-parent-java libcommons-pool-java libconfig-general-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcr0 libcrypt-rc4-perl libcrypt-ssleay-perl libcryptsetup4 libcupsfilters1 libdata-dumper-simple-perl libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdb5.3 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdconf1 libdebconfclient0 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdevmapper1.02.1 libdigest-perl-md5-perl libdns-export100 libdom4j-java libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libeigen3-dev libelf1 libelfg0 libelk0 libencode-locale-perl liberror-perl libexif12 libexiv2-13 libexpat1-dev libexporter-tiny-perl libfcgi-perl libffi6 libfftw3-double3 libfile-basedir-perl libfile-copy-recursive-perl libfile-desktopentry-perl libfile-homedir-perl libfile-listing-perl libfile-mimeinfo-perl libfile-slurp-tiny-perl libfile-which-perl libflac8 libfont-afm-perl libfont-ttf-perl libfontenc1 libfreecontact0 libfreezethaw-perl libg20 libgcc-4.9-dev libgcrypt20 libgd-graph-perl libgd-perl libgd-text-perl libgd3 libgetopt-euclid-perl libgetopt-simple-perl libgflags2 libgif4 libgl1-mesa-dri libgl1-mesa-glx libglade2-0 libglapi-mesa libglpk-java libglpk36 libglu1-mesa libgmp10 libgnutls-deb0-28 libgoogle-glog0 libgphoto2-6 libgphoto2-l10n libgphoto2-port10 libgraph-perl libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgraphviz-perl libgsl0ldbl libgtextutils0 libgtk-3-0 libgtk-3-bin libgtk-3-common libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgudev-1.0-0 libgusb2 libgvc6 libgvpr2 libhamcrest-java libharfbuzz-icu0 libharfbuzz0b libheap-perl libhogweed2 libhpdf-2.2.1 libhsqldb-java libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libicu52 libieee1284-3 libimport-into-perl libindirect-perl libio-all-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libisorelax-java libitm1 libjava-xmlbuilder-java libjaxen-java libjbzip2-java libjcode-pm-perl libjcommon-java libjdom1-java libjets3t-java libjgoodies-common-java libjgoodies-forms-java libjpeg62-turbo libjs-jquery-ui libjsch-java libjson-c2 libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp0 libjzlib-java libkmod2 libkpathsea6 libldap-2.4-2 liblexical-sealrequirehints-perl liblist-allutils-perl liblist-moreutils-perl libllvm3.5 liblog-message-perl liblog-message-simple-perl liblog4j1.2-java liblsan0 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagickcore-6.q16-2 libmagickcore-6.q16-2-extra libmagickwand-6.q16-2 libmail-java libmailtools-perl libmath-bezier-perl libmath-derivative-perl libmath-random-mt-perl libmath-round-perl libmath-spline-perl libmath-tamuanova-perl libmath-vec-perl libmath-vecstat-perl libmime-tools-perl libmldbm-perl libmng1 libmodule-build-perl libmodule-implementation-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmpc3 libmpfr4 libmro-compat-perl libmsv-java libmultidimensional-perl libmysql-java libmysqlclient18 libncbi6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle4 libnih-dbus1 libnih1 libnotify4 libnspr4 libnss3 libnuma1 libogg0 libole-storage-lite-perl libopenjpeg5 libopenmpi1.6 liboro-java libossp-uuid-perl libossp-uuid16 libpackage-constants-perl libpadwalker-perl libpam-cap libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangox-1.0-0 libpangoxft-1.0-0 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl4-corelibs-perl libperl5.20 libperlio-gzip-perl libpod-coverage-perl libpod-latex-perl libpod-readme-perl libpolkit-agent-1-0 libpolkit-backend-1-0 libpolkit-gobject-1-0 libpoppler-qt4-4 libpoppler46 libpopt0 libpostscript-perl libpotrace0 libpq5 libprocps3 libprotobuf9 libproxy1 libptexenc1 libpth20 libpulse0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libqt4-xml libqtcore4 libqtgui4 libreadonly-perl libregexp-common-perl libregexp-java librelaxng-datatype-java librest-0.7-0 librole-tiny-perl libruby2.1 libsam-java libsane libsane-common libsane-extras libsane-extras-common libsasl2-2 libsasl2-modules libsasl2-modules-db libsaxonb-java libsctp1 libservlet2.5-java libset-intspan-perl libset-scalar-perl libsmartcols1 libsndfile1 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libsoup-gnome2.4-1 libsoup2.4-1 libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libstatistics-descriptive-perl libstdc++-4.9-dev libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libsynctex1 libsystemd0 libtamuanova-0.2 libtask-weaken-perl libtasn1-6 libtbb2 libtcl8.6 libtcmalloc-minimal4 libtdb1 libterm-readkey-perl libterm-ui-perl libtest-pod-perl libtext-format-perl libtext-soundex-perl libtext-template-perl libtie-ixhash-perl libtiff5 libtimedate-perl libtk8.6 libtre5 libtree-dagnode-perl libtry-tiny-perl libtsan0 libtxc-dxtn-s2tc0 libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libudev1 libunicode-map-perl libunwind8 liburi-perl libusb-1.0-0 libutempter0 libv4l-0 libv4lconvert0 libvorbis0a libvorbisenc2 libvorbisfile3 libvpx1 libwayland-client0 libwayland-cursor0 libwebp5 libwebpdemux1 libwebpmux1 libwrap0 libwsdl4j-java libwww-perl libwww-robotrules-perl libwxbase3.0-0 libwxgtk3.0-0 libx11-protocol-perl libx11-xcb1 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shape0 libxcb-sync1 libxcomposite1 libxcursor1 libxdamage1 libxdot4 libxerces-c3.1 libxerces2-java libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxmlrpc-lite-perl libxmu6 libxmuu1 libxom-java libxpp2-java libxpp3-java libxrandr2 libxshmfence1 libxslt1.1 libxss1 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-tiny-perl libzzip-0-13 linux-libc-dev lksctp-tools lmodern loki lua-filesystem lua-lpeg lua-md5 lynx lynx-cur macs mafft manpages manpages-dev mapsembler2 maq melting minia mipe mira-assembler mothur muscle mustang mysql-client mysql-client-5.5 mysql-common ncbi-blast+ ncbi-data ncbi-epcr ncbi-tools-bin ncoils notification-daemon ocl-icd-libopencl1 openjdk-7-jre openjdk-7-jre-headless openmpi-bin openmpi-common openssl parsinsert perl-doc perl-tk perm phyml phyutility picard-tools pkg-config plink poa policykit-1 prank prerex preview-latex-style primer3 probalign probcons procps proda prosper ps2eps psmisc python-all python-all-dev python-biopython python-biopython-doc python-cairo python-dateutil python-decorator python-dev python-glade2 python-gmpy python-gobject-2 python-gtk2 python-htseq python-imaging python-matplotlib python-matplotlib-data python-mock python-mpmath python-nose python-pexpect python-pil python-pkg-resources python-pyglet python-pyparsing python-pyrex python-pysam python-renderpm python-reportlab python-reportlab-accel python-scipy python-simplegeneric python-six python-sympy python-tk python-tz python-wxgtk3.0 python-wxversion python2.7-dev qtcore4-l10n rename rnahybrid rtax ruby ruby2.1 rubygems-integration samtools sane-utils seqan-apps sim4 smalt ssake startpar systemd systemd-shim systemd-sysv t-coffee tcl tcl8.6 tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc tigr-glimmer tipa tk tk8.6 tk8.6-blt2.5 tm-align tophat ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis tzdata-java udev update-inetd velvet vprerex wise wise-data x11-utils x11-xserver-utils xbitmaps xdg-user-dirs xdg-utils xkb-data xterm The following packages will be upgraded: apt autodock base-files base-passwd bash blends-common bsdutils clustalw coreutils dash dbus debconf debconf-i18n debian-archive-keyring debianutils diffutils dmidecode dpkg e2fslibs e2fsprogs file findutils fontconfig fontconfig-config fonts-droid ghostscript gnupg gpgv grep gzip hicolor-icon-theme hostname ifupdown imagemagick imagemagick-common initscripts iproute javascript-common krb5-locales libacl1 libapt-pkg4.12 libattr1 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libblkid1 libbz2-1.0 libc-bin libc6 libcairo2 libcap2 libclass-isa-perl libcomerr2 libcroco3 libcups2 libcupsimage2 libdatrie1 libdbus-1-3 libdjvulibre-text libdjvulibre21 libexpat1 libfontconfig1 libfreetype6 libgcc1 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libglib2.0-data libgomp1 libgpg-error0 libgpm2 libgs9 libgs9-common libgssapi-krb5-2 libice6 libidn11 libijs-0.35 libilmbase6 libjasper1 libjbig0 libjbig2dec0 libjs-jquery libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 liblensfun-data liblensfun0 liblocale-gettext-perl liblqr-1-0 libltdl7 liblzma5 libmagic1 libmount1 libncurses5 libncursesw5 libnetpbm10 libopenexr6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpixman-1-0 libpng12-0 libquadmath0 libreadline6 librsvg2-2 librsvg2-common libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsm6 libsqlite3-0 libss2 libssl1.0.0 libstdc++6 libswitch-perl libsystemd-login0 libtext-charwidth-perl libtext-iconv-perl libthai-data libthai0 libtinfo5 libusb-0.1-4 libustr-1.0-1 libuuid1 libwmf0.2-7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxpm4 libxrender1 libxt6 login lsb-base med-cloud med-config med-tasks menu mime-support mount multiarch-support ncurses-base ncurses-bin netbase netpbm passwd perl perl-base perl-modules poppler-data python python-cogent python-minimal python-numpy python2.7 python2.7-minimal raster3d readline-common sed sensible-utils shared-mime-info sysv-rc sysvinit sysvinit-utils tar tasksel tasksel-data ttf-dejavu-core tzdata ucf ufraw-batch util-linux x11-common xz-utils zlib1g 196 upgraded, 825 newly installed, 1 to remove and 0 not upgraded. Need to get 1545 MB of archives. After this operation, 3676 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ jessie/main libc6 amd64 2.19-18+deb8u10 [4665 kB] Get:2 http://mirror.bm.debian.org/debian/ jessie/main libc-bin amd64 2.19-18+deb8u10 [1281 kB] Get:3 http://mirror.bm.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10+deb8u1 [37.8 kB] Get:4 http://mirror.bm.debian.org/debian/ jessie/main gcc-4.9-base amd64 4.9.2-10+deb8u1 [160 kB] Get:5 http://mirror.bm.debian.org/debian/ jessie/main libstdc++6 amd64 4.9.2-10+deb8u1 [273 kB] Get:6 http://mirror.bm.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10+deb8u1 [254 kB] Get:7 http://mirror.bm.debian.org/debian/ jessie/main libgcc1 amd64 1:4.9.2-10+deb8u1 [39.5 kB] Get:8 http://mirror.bm.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10+deb8u1 [129 kB] Get:9 http://mirror.bm.debian.org/debian/ jessie/main base-files amd64 8+deb8u11 [78.2 kB] Get:10 http://mirror.bm.debian.org/debian/ jessie/main sensible-utils all 0.0.9+deb8u1 [10.9 kB] Get:11 http://mirror.bm.debian.org/debian/ jessie/main debianutils amd64 4.4+b1 [99.1 kB] Get:12 http://mirror.bm.debian.org/debian/ jessie/main bash amd64 4.3-11+deb8u1 [1172 kB] Get:13 http://mirror.bm.debian.org/debian/ jessie/main libgpg-error0 amd64 1.17-3 [94.9 kB] Get:14 http://mirror.bm.debian.org/debian/ jessie/main libgcrypt20 amd64 1.6.3-2+deb8u4 [392 kB] Get:15 http://mirror.bm.debian.org/debian/ jessie/main libsystemd0 amd64 215-17+deb8u7 [89.4 kB] Get:16 http://mirror.bm.debian.org/debian/ jessie/main bsdutils amd64 1:2.25.2-6 [94.0 kB] Get:17 http://mirror.bm.debian.org/debian/ jessie/main libpcre3 amd64 2:8.35-3.3+deb8u4 [322 kB] Get:18 http://mirror.bm.debian.org/debian/ jessie/main libselinux1 amd64 2.3-2 [89.8 kB] Get:19 http://mirror.bm.debian.org/debian/ jessie/main coreutils amd64 8.23-4 [2727 kB] Get:20 http://mirror.bm.debian.org/debian/ jessie/main ttf-dejavu-core all 2.34-1 [30.7 kB] Get:21 http://mirror.bm.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:22 http://mirror.bm.debian.org/debian/ jessie/main fonts-liberation all 1.07.4-1 [835 kB] Get:23 http://mirror.bm.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:24 http://mirror.bm.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:25 http://mirror.bm.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:26 http://mirror.bm.debian.org/debian/ jessie/main dpkg amd64 1.17.27 [2994 kB] Get:27 http://mirror.bm.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:28 http://mirror.bm.debian.org/debian/ jessie/main libtext-charwidth-perl amd64 0.04-7+b3 [10.7 kB] Get:29 http://mirror.bm.debian.org/debian/ jessie/main perl-base amd64 5.20.2-3+deb8u11 [1230 kB] Get:30 http://mirror.bm.debian.org/debian/ jessie/main liblocale-gettext-perl amd64 1.05-8+b1 [19.0 kB] Get:31 http://mirror.bm.debian.org/debian/ jessie/main libtext-iconv-perl amd64 1.7-5+b2 [16.2 kB] Get:32 http://mirror.bm.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:33 http://mirror.bm.debian.org/debian/ jessie/main libdb5.3 amd64 5.3.28-9+deb8u1 [680 kB] Get:34 http://mirror.bm.debian.org/debian/ jessie/main libbz2-1.0 amd64 1.0.6-7+b3 [43.5 kB] Get:35 http://mirror.bm.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:36 http://mirror.bm.debian.org/debian/ jessie/main zlib1g amd64 1:1.2.8.dfsg-2+b1 [88.8 kB] Get:37 http://mirror.bm.debian.org/debian/ jessie/main debconf all 1.5.56+deb8u1 [167 kB] Get:38 http://mirror.bm.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] Get:39 http://mirror.bm.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:40 http://mirror.bm.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:41 http://mirror.bm.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:42 http://mirror.bm.debian.org/debian/ jessie/main dash amd64 0.5.7-4+b1 [109 kB] Get:43 http://mirror.bm.debian.org/debian/ jessie/main diffutils amd64 1:3.3-1+b1 [267 kB] Get:44 http://mirror.bm.debian.org/debian/ jessie/main e2fslibs amd64 1.42.12-2+b1 [186 kB] Get:45 http://mirror.bm.debian.org/debian/ jessie/main e2fsprogs amd64 1.42.12-2+b1 [750 kB] Get:46 http://mirror.bm.debian.org/debian/ jessie/main findutils amd64 4.4.2-9+b1 [485 kB] Get:47 http://mirror.bm.debian.org/debian/ jessie/main grep amd64 2.20-4.1 [325 kB] Get:48 http://mirror.bm.debian.org/debian/ jessie/main gzip amd64 1.6-4 [111 kB] Get:49 http://mirror.bm.debian.org/debian/ jessie/main hostname amd64 3.15 [13.9 kB] Get:50 http://mirror.bm.debian.org/debian/ jessie/main libaudit-common all 1:2.4-1 [13.5 kB] Get:51 http://mirror.bm.debian.org/debian/ jessie/main libaudit1 amd64 1:2.4-1+b1 [44.7 kB] Get:52 http://mirror.bm.debian.org/debian/ jessie/main libudev1 amd64 215-17+deb8u7 [57.8 kB] Get:53 http://mirror.bm.debian.org/debian/ jessie/main libpam0g amd64 1.1.8-3.1+deb8u2+b1 [126 kB] Get:54 http://mirror.bm.debian.org/debian/ jessie/main libsemanage-common all 2.3-1 [24.6 kB] Get:55 http://mirror.bm.debian.org/debian/ jessie/main libsemanage1 amd64 2.3-1+b1 [90.2 kB] Get:56 http://mirror.bm.debian.org/debian/ jessie/main libsepol1 amd64 2.3-2 [127 kB] Get:57 http://mirror.bm.debian.org/debian/ jessie/main libustr-1.0-1 amd64 1.0.4-3+b2 [79.6 kB] Get:58 http://mirror.bm.debian.org/debian/ jessie/main libpam-modules-bin amd64 1.1.8-3.1+deb8u2+b1 [104 kB] Get:59 http://mirror.bm.debian.org/debian/ jessie/main libpam-modules amd64 1.1.8-3.1+deb8u2+b1 [307 kB] Get:60 http://mirror.bm.debian.org/debian/ jessie/main passwd amd64 1:4.2-3+deb8u4 [971 kB] Get:61 http://mirror.bm.debian.org/debian/ jessie/main libuuid1 amd64 2.25.2-6 [64.7 kB] Get:62 http://mirror.bm.debian.org/debian/ jessie/main libblkid1 amd64 2.25.2-6 [156 kB] Get:63 http://mirror.bm.debian.org/debian/ jessie/main libmount1 amd64 2.25.2-6 [164 kB] Get:64 http://mirror.bm.debian.org/debian/ jessie/main libsmartcols1 amd64 2.25.2-6 [110 kB] Get:65 http://mirror.bm.debian.org/debian/ jessie/main startpar amd64 0.59-3 [21.8 kB] Get:66 http://mirror.bm.debian.org/debian/ jessie/main sysvinit-utils amd64 2.88dsf-59 [84.4 kB] Get:67 http://mirror.bm.debian.org/debian/ jessie/main iproute all 1:3.16.0-2 [15.5 kB] Get:68 http://mirror.bm.debian.org/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB] Get:69 http://mirror.bm.debian.org/debian/ jessie/main lsb-base all 4.1+Debian13+nmu1 [26.7 kB] Get:70 http://mirror.bm.debian.org/debian/ jessie/main sysv-rc all 2.88dsf-59 [82.8 kB] Get:71 http://mirror.bm.debian.org/debian/ jessie/main ifupdown amd64 0.7.53.1 [67.2 kB] Get:72 http://mirror.bm.debian.org/debian/ jessie/main initscripts amd64 2.88dsf-59 [87.2 kB] Get:73 http://mirror.bm.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:74 http://mirror.bm.debian.org/debian/ jessie/main mount amd64 2.25.2-6 [168 kB] Get:75 http://mirror.bm.debian.org/debian/ jessie/main tzdata all 2018e-0+deb8u1 [233 kB] Get:76 http://mirror.bm.debian.org/debian/ jessie/main util-linux amd64 2.25.2-6 [845 kB] Get:77 http://mirror.bm.debian.org/debian/ jessie/main libdevmapper1.02.1 amd64 2:1.02.90-2.2+deb8u1 [145 kB] Get:78 http://mirror.bm.debian.org/debian/ jessie/main dmsetup amd64 2:1.02.90-2.2+deb8u1 [69.1 kB] Get:79 http://mirror.bm.debian.org/debian/ jessie/main libcryptsetup4 amd64 2:1.6.6-5 [103 kB] Get:80 http://mirror.bm.debian.org/debian/ jessie/main libkmod2 amd64 18-3 [46.2 kB] Get:81 http://mirror.bm.debian.org/debian/ jessie/main libprocps3 amd64 2:3.3.9-9+deb8u1 [56.7 kB] Get:82 http://mirror.bm.debian.org/debian/ jessie/main libtinfo5 amd64 5.9+20140913-1+deb8u3 [282 kB] Get:83 http://mirror.bm.debian.org/debian/ jessie/main libncurses5 amd64 5.9+20140913-1+deb8u3 [96.6 kB] Get:84 http://mirror.bm.debian.org/debian/ jessie/main libncursesw5 amd64 5.9+20140913-1+deb8u3 [123 kB] Get:85 http://mirror.bm.debian.org/debian/ jessie/main procps amd64 2:3.3.9-9+deb8u1 [236 kB] Get:86 http://mirror.bm.debian.org/debian/ jessie/main libattr1 amd64 1:2.4.47-2 [18.3 kB] Get:87 http://mirror.bm.debian.org/debian/ jessie/main libacl1 amd64 2.2.52-2 [27.9 kB] Get:88 http://mirror.bm.debian.org/debian/ jessie/main udev amd64 215-17+deb8u7 [876 kB] Get:89 http://mirror.bm.debian.org/debian/ jessie/main acl amd64 2.2.52-2 [58.4 kB] Get:90 http://mirror.bm.debian.org/debian/ jessie/main libcap2 amd64 1:2.24-8 [15.3 kB] Get:91 http://mirror.bm.debian.org/debian/ jessie/main libcap2-bin amd64 1:2.24-8 [25.4 kB] Get:92 http://mirror.bm.debian.org/debian/ jessie/main systemd amd64 215-17+deb8u7 [2545 kB] Get:93 http://mirror.bm.debian.org/debian/ jessie/main systemd-sysv amd64 215-17+deb8u7 [36.7 kB] Get:94 http://mirror.bm.debian.org/debian/ jessie/main init amd64 1.22 [4674 B] Get:95 http://mirror.bm.debian.org/debian/ jessie/main login amd64 1:4.2-3+deb8u4 [722 kB] Get:96 http://mirror.bm.debian.org/debian/ jessie/main ncurses-bin amd64 5.9+20140913-1+deb8u3 [347 kB] Get:97 http://mirror.bm.debian.org/debian/ jessie/main sed amd64 4.2.2-4+deb8u1 [243 kB] Get:98 http://mirror.bm.debian.org/debian/ jessie/main tar amd64 1.27.1-2+deb8u1 [676 kB] Get:99 http://mirror.bm.debian.org/debian/ jessie/main sysvinit amd64 2.88dsf-59 [99.9 kB] Get:100 http://mirror.bm.debian.org/debian/ jessie/main liblzma5 amd64 5.1.1alpha+20120614-2+b3 [194 kB] Get:101 http://mirror.bm.debian.org/debian/ jessie/main libapt-pkg4.12 amd64 1.0.9.8.4 [792 kB] Get:102 http://mirror.bm.debian.org/debian/ jessie/main gpgv amd64 1.4.18-7+deb8u5 [209 kB] Get:103 http://mirror.bm.debian.org/debian/ jessie/main debian-archive-keyring all 2017.5~deb8u1 [56.7 kB] Get:104 http://mirror.bm.debian.org/debian/ jessie/main readline-common all 6.3-8 [57.7 kB] Get:105 http://mirror.bm.debian.org/debian/ jessie/main libreadline6 amd64 6.3-8+b3 [143 kB] Get:106 http://mirror.bm.debian.org/debian/ jessie/main libusb-0.1-4 amd64 2:0.1.12-25 [21.9 kB] Get:107 http://mirror.bm.debian.org/debian/ jessie/main gnupg amd64 1.4.18-7+deb8u5 [1150 kB] Get:108 http://mirror.bm.debian.org/debian/ jessie/main apt amd64 1.0.9.8.4 [1109 kB] Get:109 http://mirror.bm.debian.org/debian/ jessie/main libdebconfclient0 amd64 0.192 [46.2 kB] Get:110 http://mirror.bm.debian.org/debian/ jessie/main base-passwd amd64 3.5.37 [64.5 kB] Get:111 http://mirror.bm.debian.org/debian/ jessie/main ncurses-base all 5.9+20140913-1+deb8u3 [222 kB] Get:112 http://mirror.bm.debian.org/debian/ jessie/main libslang2 amd64 2.3.0-2 [491 kB] Get:113 http://mirror.bm.debian.org/debian/ jessie/main libcomerr2 amd64 1.42.12-2+b1 [60.7 kB] Get:114 http://mirror.bm.debian.org/debian/ jessie/main libss2 amd64 1.42.12-2+b1 [65.0 kB] Get:115 http://mirror.bm.debian.org/debian/ jessie/main libboost-iostreams1.55.0 amd64 1.55.0+dfsg-3 [48.9 kB] Get:116 http://mirror.bm.debian.org/debian/ jessie/main libjson-c2 amd64 0.11-4 [24.8 kB] Get:117 http://mirror.bm.debian.org/debian/ jessie/main libpopt0 amd64 1.16-10 [49.2 kB] Get:118 http://mirror.bm.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:119 http://mirror.bm.debian.org/debian/ jessie/main tasksel-data all 3.31+deb8u1 [18.0 kB] Get:120 http://mirror.bm.debian.org/debian/ jessie/main tasksel all 3.31+deb8u1 [95.9 kB] Get:121 http://mirror.bm.debian.org/debian/ jessie/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:122 http://mirror.bm.debian.org/debian/ jessie/main libedit2 amd64 3.1-20140620-2 [85.1 kB] Get:123 http://mirror.bm.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:124 http://mirror.bm.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:125 http://mirror.bm.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:126 http://mirror.bm.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:127 http://mirror.bm.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:128 http://mirror.bm.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:129 http://mirror.bm.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:130 http://mirror.bm.debian.org/debian/ jessie/main libgpm2 amd64 1.20.4-6.1+b2 [34.0 kB] Get:131 http://mirror.bm.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:132 http://mirror.bm.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:133 http://mirror.bm.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:134 http://mirror.bm.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:135 http://mirror.bm.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:136 http://mirror.bm.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:137 http://mirror.bm.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:138 http://mirror.bm.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:139 http://mirror.bm.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u4 [218 kB] Get:140 http://mirror.bm.debian.org/debian/ jessie/main file amd64 1:5.22+15-2+deb8u4 [60.5 kB] Get:141 http://mirror.bm.debian.org/debian/ jessie/main libmagic1 amd64 1:5.22+15-2+deb8u4 [250 kB] Get:142 http://mirror.bm.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:143 http://mirror.bm.debian.org/debian/ jessie/main libwrap0 amd64 7.6.q-25 [58.5 kB] Get:144 http://mirror.bm.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:145 http://mirror.bm.debian.org/debian/ jessie/main python2.7 amd64 2.7.9-2+deb8u1 [252 kB] Get:146 http://mirror.bm.debian.org/debian/ jessie/main python2.7-minimal amd64 2.7.9-2+deb8u1 [1401 kB] Get:147 http://mirror.bm.debian.org/debian/ jessie/main libpython2.7-minimal amd64 2.7.9-2+deb8u1 [378 kB] Get:148 http://mirror.bm.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:149 http://mirror.bm.debian.org/debian/ jessie/main libpython2.7-stdlib amd64 2.7.9-2+deb8u1 [1847 kB] Get:150 http://mirror.bm.debian.org/debian/ jessie/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:151 http://mirror.bm.debian.org/debian/ jessie/main python amd64 2.7.9-1 [151 kB] Get:152 http://mirror.bm.debian.org/debian/ jessie/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:153 http://mirror.bm.debian.org/debian/ jessie/main fonts-circos-symbols all 0.66-1 [31.6 kB] Get:154 http://mirror.bm.debian.org/debian/ jessie/main fonts-cmu all 0.7.0-3 [4874 kB] Get:155 http://mirror.bm.debian.org/debian/ jessie/main libregexp-common-perl all 2013031301-1 [173 kB] Get:156 http://mirror.bm.debian.org/debian/ jessie/main libcarp-always-perl all 0.12-1 [9142 B] Get:157 http://mirror.bm.debian.org/debian/ jessie/main libconfig-general-perl all 2.56-1 [70.0 kB] Get:158 http://mirror.bm.debian.org/debian/ jessie/main libdata-dumper-simple-perl all 0.11-4 [13.1 kB] Get:159 http://mirror.bm.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:160 http://mirror.bm.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:161 http://mirror.bm.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:162 http://mirror.bm.debian.org/debian/ jessie/main libvpx1 amd64 1.3.0-3+deb8u1 [600 kB] Get:163 http://mirror.bm.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:164 http://mirror.bm.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:165 http://mirror.bm.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:166 http://mirror.bm.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:167 http://mirror.bm.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:168 http://mirror.bm.debian.org/debian/ jessie/main libxpm4 amd64 1:3.5.12-0+deb8u1 [49.2 kB] Get:169 http://mirror.bm.debian.org/debian/ jessie/main libgd3 amd64 2.1.0-5+deb8u11 [148 kB] Get:170 http://mirror.bm.debian.org/debian/ jessie/main libgd-perl amd64 2.53-1+b1 [180 kB] Get:171 http://mirror.bm.debian.org/debian/ jessie/main libgetopt-simple-perl all 1.52-4 [14.4 kB] Get:172 http://mirror.bm.debian.org/debian/ jessie/main libmath-bezier-perl all 0.01-1 [7950 B] Get:173 http://mirror.bm.debian.org/debian/ jessie/main libmath-round-perl all 0.06-4 [10.1 kB] Get:174 http://mirror.bm.debian.org/debian/ jessie/main libparams-classify-perl amd64 0.013-4+b2 [24.1 kB] Get:175 http://mirror.bm.debian.org/debian/ jessie/main libmodule-runtime-perl all 0.014-1 [17.9 kB] Get:176 http://mirror.bm.debian.org/debian/ jessie/main libtry-tiny-perl all 0.22-1 [19.6 kB] Get:177 http://mirror.bm.debian.org/debian/ jessie/main libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:178 http://mirror.bm.debian.org/debian/ jessie/main libparams-validate-perl amd64 1.13-1+b1 [65.2 kB] Get:179 http://mirror.bm.debian.org/debian/ jessie/main libreadonly-perl all 2.000-1 [20.8 kB] Get:180 http://mirror.bm.debian.org/debian/ jessie/main libset-intspan-perl all 1.19-1 [26.7 kB] Get:181 http://mirror.bm.debian.org/debian/ jessie/main liblist-moreutils-perl amd64 0.33-2+b1 [44.4 kB] Get:182 http://mirror.bm.debian.org/debian/ jessie/main liblist-allutils-perl all 0.09-1 [20.4 kB] Get:183 http://mirror.bm.debian.org/debian/ jessie/main libfile-basedir-perl all 0.03-1 [10.4 kB] Get:184 http://mirror.bm.debian.org/debian/ jessie/main libmath-vec-perl all 1.01-2 [17.7 kB] Get:185 http://mirror.bm.debian.org/debian/ jessie/main libspiffy-perl all 0.41-1 [26.1 kB] Get:186 http://mirror.bm.debian.org/debian/ jessie/main libio-all-perl all 0.79-1 [68.2 kB] Get:187 http://mirror.bm.debian.org/debian/ jessie/main libmath-vecstat-perl all 0.08-1 [9148 B] Get:188 http://mirror.bm.debian.org/debian/ jessie/main libgraphics-colornames-perl all 2.11-6 [37.7 kB] Get:189 http://mirror.bm.debian.org/debian/ jessie/main libgraphics-colorobject-perl all 0.5.0-6 [28.7 kB] Get:190 http://mirror.bm.debian.org/debian/ jessie/main libtext-format-perl all 0.59-1 [19.6 kB] Get:191 http://mirror.bm.debian.org/debian/ jessie/main libio-string-perl all 1.08-3 [12.3 kB] Get:192 http://mirror.bm.debian.org/debian/ jessie/main libfont-ttf-perl all 1.04-1 [355 kB] Get:193 http://mirror.bm.debian.org/debian/ jessie/main libclone-perl amd64 0.37-1+b1 [14.2 kB] Get:194 http://mirror.bm.debian.org/debian/ jessie/main circos all 0.66-1 [19.2 MB] Get:195 http://mirror.bm.debian.org/debian/ jessie/main circos-tools all 0.18-1 [13.3 MB] Get:196 http://mirror.bm.debian.org/debian/ jessie/main fonts-droid all 1:4.4.4r2-6 [3729 kB] Get:197 http://mirror.bm.debian.org/debian/ jessie/main fonts-lato all 2.0-1 [2684 kB] Get:198 http://mirror.bm.debian.org/debian/ jessie/main imagemagick-common all 8:6.8.9.9-5+deb8u12 [154 kB] Get:199 http://mirror.bm.debian.org/debian/ jessie/main libamd2.3.1 amd64 1:4.2.1-3 [26.3 kB] Get:200 http://mirror.bm.debian.org/debian/ jessie/main libapr1 amd64 1.5.1-3 [95.3 kB] Get:201 http://mirror.bm.debian.org/debian/ jessie/main libaprutil1 amd64 1.5.4-1 [86.2 kB] Get:202 http://mirror.bm.debian.org/debian/ jessie/main libart-2.0-2 amd64 2.3.21-2 [72.7 kB] Get:203 http://mirror.bm.debian.org/debian/ jessie/main libasan1 amd64 4.9.2-10+deb8u1 [195 kB] Get:204 http://mirror.bm.debian.org/debian/ jessie/main libasound2-data all 1.0.28-1 [64.8 kB] Get:205 http://mirror.bm.debian.org/debian/ jessie/main libasound2 amd64 1.0.28-1 [374 kB] Get:206 http://mirror.bm.debian.org/debian/ jessie/main libasyncns0 amd64 0.8-5 [12.5 kB] Get:207 http://mirror.bm.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:208 http://mirror.bm.debian.org/debian/ jessie/main libatk1.0-data all 2.14.0-1 [181 kB] Get:209 http://mirror.bm.debian.org/debian/ jessie/main libatk1.0-0 amd64 2.14.0-1 [92.0 kB] Get:210 http://mirror.bm.debian.org/debian/ jessie/main libdbus-1-3 amd64 1.8.22-0+deb8u1 [170 kB] Get:211 http://mirror.bm.debian.org/debian/ jessie/main libatspi2.0-0 amd64 2.14.0-1 [57.7 kB] Get:212 http://mirror.bm.debian.org/debian/ jessie/main libatk-bridge2.0-0 amd64 2.14.0-2 [54.8 kB] Get:213 http://mirror.bm.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:214 http://mirror.bm.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:215 http://mirror.bm.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:216 http://mirror.bm.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:217 http://mirror.bm.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:218 http://mirror.bm.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:219 http://mirror.bm.debian.org/debian/ jessie/main libcroco3 amd64 0.6.8-3+b1 [135 kB] Get:220 http://mirror.bm.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:221 http://mirror.bm.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:222 http://mirror.bm.debian.org/debian/ jessie/main libpango1.0-0 amd64 1.36.8-3 [183 kB] Get:223 http://mirror.bm.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:224 http://mirror.bm.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:225 http://mirror.bm.debian.org/debian/ jessie/main libpangox-1.0-0 amd64 0.0.2-5 [42.0 kB] Get:226 http://mirror.bm.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:227 http://mirror.bm.debian.org/debian/ jessie/main libpangoxft-1.0-0 amd64 1.36.8-3 [195 kB] Get:228 http://mirror.bm.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:229 http://mirror.bm.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:230 http://mirror.bm.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:231 http://mirror.bm.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:232 http://mirror.bm.debian.org/debian/ jessie/main librsvg2-common amd64 2.40.5-1+deb8u2 [170 kB] Get:233 http://mirror.bm.debian.org/debian/ jessie/main libgdk-pixbuf2.0-common all 2.31.1-2+deb8u7 [294 kB] Get:234 http://mirror.bm.debian.org/debian/ jessie/main libgdk-pixbuf2.0-0 amd64 2.31.1-2+deb8u7 [167 kB] Get:235 http://mirror.bm.debian.org/debian/ jessie/main librsvg2-2 amd64 2.40.5-1+deb8u2 [249 kB] Get:236 http://mirror.bm.debian.org/debian/ jessie/main libjasper1 amd64 1.900.1-debian1-2.4+deb8u3 [134 kB] Get:237 http://mirror.bm.debian.org/debian/ jessie/main libgtk2.0-common all 2.24.25-3+deb8u2 [3137 kB] Get:238 http://mirror.bm.debian.org/debian/ jessie/main libcupsfilters1 amd64 1.0.61-5+deb8u3 [106 kB] Get:239 http://mirror.bm.debian.org/debian/ jessie/main libcupsimage2 amd64 1.7.5-11+deb8u2 [117 kB] Get:240 http://mirror.bm.debian.org/debian/ jessie/main libavahi-common-data amd64 0.6.31-5 [98.6 kB] Get:241 http://mirror.bm.debian.org/debian/ jessie/main libavahi-common3 amd64 0.6.31-5 [51.1 kB] Get:242 http://mirror.bm.debian.org/debian/ jessie/main libavahi-client3 amd64 0.6.31-5 [54.4 kB] Get:243 http://mirror.bm.debian.org/debian/ jessie/main libcups2 amd64 1.7.5-11+deb8u2 [284 kB] Get:244 http://mirror.bm.debian.org/debian/ jessie/main libxcomposite1 amd64 1:0.4.4-1 [17.4 kB] Get:245 http://mirror.bm.debian.org/debian/ jessie/main libxfixes3 amd64 1:5.0.1-2+deb8u1 [21.1 kB] Get:246 http://mirror.bm.debian.org/debian/ jessie/main libxcursor1 amd64 1:1.1.14-1+deb8u1 [35.0 kB] Get:247 http://mirror.bm.debian.org/debian/ jessie/main libxdamage1 amd64 1:1.1.4-2+b1 [14.7 kB] Get:248 http://mirror.bm.debian.org/debian/ jessie/main libxi6 amd64 2:1.7.4-1+deb8u1 [79.9 kB] Get:249 http://mirror.bm.debian.org/debian/ jessie/main libxinerama1 amd64 2:1.1.3-1+b1 [16.9 kB] Get:250 http://mirror.bm.debian.org/debian/ jessie/main libxrandr2 amd64 2:1.4.2-1+deb8u1 [35.5 kB] Get:251 http://mirror.bm.debian.org/debian/ jessie/main shared-mime-info amd64 1.3-1 [634 kB] Get:252 http://mirror.bm.debian.org/debian/ jessie/main libgtk2.0-0 amd64 2.24.25-3+deb8u2 [2302 kB] Get:253 http://mirror.bm.debian.org/debian/ jessie/main libatk-wrapper-java all 0.30.5-1 [30.3 kB] Get:254 http://mirror.bm.debian.org/debian/ jessie/main libatk-wrapper-java-jni amd64 0.30.5-1 [24.8 kB] Get:255 http://mirror.bm.debian.org/debian/ jessie/main libatomic1 amd64 4.9.2-10+deb8u1 [9014 B] Get:256 http://mirror.bm.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:257 http://mirror.bm.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:258 http://mirror.bm.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:259 http://mirror.bm.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:260 http://mirror.bm.debian.org/debian/ jessie/main libaudio2 amd64 1.9.4-3 [79.8 kB] Get:261 http://mirror.bm.debian.org/debian/ jessie/main libboost-system1.55.0 amd64 1.55.0+dfsg-3 [30.2 kB] Get:262 http://mirror.bm.debian.org/debian/ jessie/main libboost-filesystem1.55.0 amd64 1.55.0+dfsg-3 [58.8 kB] Get:263 http://mirror.bm.debian.org/debian/ jessie/main libboost-program-options1.55.0 amd64 1.55.0+dfsg-3 [143 kB] Get:264 http://mirror.bm.debian.org/debian/ jessie/main libicu52 amd64 52.1-8+deb8u7 [6807 kB] Get:265 http://mirror.bm.debian.org/debian/ jessie/main libboost-regex1.55.0 amd64 1.55.0+dfsg-3 [293 kB] Get:266 http://mirror.bm.debian.org/debian/ jessie/main libboost-serialization1.55.0 amd64 1.55.0+dfsg-3 [153 kB] Get:267 http://mirror.bm.debian.org/debian/ jessie/main libboost-thread1.55.0 amd64 1.55.0+dfsg-3 [53.4 kB] Get:268 http://mirror.bm.debian.org/debian/ jessie/main libcairo-gobject2 amd64 1.14.0-2.1+deb8u2 [304 kB] Get:269 http://mirror.bm.debian.org/debian/ jessie/main libltdl7 amd64 2.4.2-1.11+b1 [45.4 kB] Get:270 http://mirror.bm.debian.org/debian/ jessie/main libogg0 amd64 1.3.2-1 [19.9 kB] Get:271 http://mirror.bm.debian.org/debian/ jessie/main libtdb1 amd64 1.3.6-0+deb8u1 [42.6 kB] Get:272 http://mirror.bm.debian.org/debian/ jessie/main libvorbis0a amd64 1.3.4-2+deb8u1 [92.5 kB] Get:273 http://mirror.bm.debian.org/debian/ jessie/main libvorbisfile3 amd64 1.3.4-2+deb8u1 [23.7 kB] Get:274 http://mirror.bm.debian.org/debian/ jessie/main libcanberra0 amd64 0.30-2.1 [36.8 kB] Get:275 http://mirror.bm.debian.org/debian/ jessie/main libdconf1 amd64 0.22.0-1 [35.2 kB] Get:276 http://mirror.bm.debian.org/debian/ jessie/main dconf-service amd64 0.22.0-1 [41.6 kB] Get:277 http://mirror.bm.debian.org/debian/ jessie/main dconf-gsettings-backend amd64 0.22.0-1 [33.9 kB] Get:278 http://mirror.bm.debian.org/debian/ jessie/main hicolor-icon-theme all 0.13-1 [8600 B] Get:279 http://mirror.bm.debian.org/debian/ jessie/main libwayland-client0 amd64 1.6.0-2 [23.4 kB] Get:280 http://mirror.bm.debian.org/debian/ jessie/main libwayland-cursor0 amd64 1.6.0-2 [12.5 kB] Get:281 http://mirror.bm.debian.org/debian/ jessie/main xkb-data all 2.12-1 [597 kB] Get:282 http://mirror.bm.debian.org/debian/ jessie/main libxkbcommon0 amd64 0.4.3-2 [115 kB] Get:283 http://mirror.bm.debian.org/debian/ jessie/main libgtk-3-bin amd64 3.14.5-1+deb8u1 [93.7 kB] Get:284 http://mirror.bm.debian.org/debian/ jessie/main adwaita-icon-theme all 3.14.0-2 [9978 kB] Get:285 http://mirror.bm.debian.org/debian/ jessie/main libgtk-3-common all 3.14.5-1+deb8u1 [3155 kB] Get:286 http://mirror.bm.debian.org/debian/ jessie/main liblcms2-2 amd64 2.6-3+deb8u1 [141 kB] Get:287 http://mirror.bm.debian.org/debian/ jessie/main libcolord2 amd64 1.2.1-1+b2 [229 kB] Get:288 http://mirror.bm.debian.org/debian/ jessie/main libjson-glib-1.0-common all 1.0.2-1 [147 kB] Get:289 http://mirror.bm.debian.org/debian/ jessie/main libjson-glib-1.0-0 amd64 1.0.2-1 [158 kB] Get:290 http://mirror.bm.debian.org/debian/ jessie/main libproxy1 amd64 0.4.11-4+b2 [56.8 kB] Get:291 http://mirror.bm.debian.org/debian/ jessie/main glib-networking-common all 2.42.0-2 [52.1 kB] Get:292 http://mirror.bm.debian.org/debian/ jessie/main glib-networking-services amd64 2.42.0-2 [17.0 kB] Get:293 http://mirror.bm.debian.org/debian/ jessie/main gsettings-desktop-schemas all 3.14.1-1 [391 kB] Get:294 http://mirror.bm.debian.org/debian/ jessie/main glib-networking amd64 2.42.0-2 [51.9 kB] Get:295 http://mirror.bm.debian.org/debian/ jessie/main libsoup2.4-1 amd64 2.48.0-1+deb8u1 [259 kB] Get:296 http://mirror.bm.debian.org/debian/ jessie/main libsoup-gnome2.4-1 amd64 2.48.0-1+deb8u1 [57.4 kB] Get:297 http://mirror.bm.debian.org/debian/ jessie/main librest-0.7-0 amd64 0.7.92-3 [33.2 kB] Get:298 http://mirror.bm.debian.org/debian/ jessie/main libgtk-3-0 amd64 3.14.5-1+deb8u1 [2249 kB] Get:299 http://mirror.bm.debian.org/debian/ jessie/main libcanberra-gtk3-0 amd64 0.30-2.1 [14.9 kB] Get:300 http://mirror.bm.debian.org/debian/ jessie/main libcap-ng0 amd64 0.7.4-2 [13.2 kB] Get:301 http://mirror.bm.debian.org/debian/ jessie/main libcilkrts5 amd64 4.9.2-10+deb8u1 [40.1 kB] Get:302 http://mirror.bm.debian.org/debian/ jessie/main libisl10 amd64 0.12.2-2 [440 kB] Get:303 http://mirror.bm.debian.org/debian/ jessie/main libcloog-isl4 amd64 0.18.2-1+b2 [61.8 kB] Get:304 http://mirror.bm.debian.org/debian/ jessie/main libcolamd2.8.0 amd64 1:4.2.1-3 [20.4 kB] Get:305 http://mirror.bm.debian.org/debian/ jessie/main libgudev-1.0-0 amd64 215-17+deb8u7 [42.6 kB] Get:306 http://mirror.bm.debian.org/debian/ jessie/main libusb-1.0-0 amd64 2:1.0.19-1 [48.1 kB] Get:307 http://mirror.bm.debian.org/debian/ jessie/main libgusb2 amd64 0.1.6-5 [17.7 kB] Get:308 http://mirror.bm.debian.org/debian/ jessie/main libcolorhug2 amd64 1.2.1-1+b2 [154 kB] Get:309 http://mirror.bm.debian.org/debian/ jessie/main libdjvulibre-text all 3.5.25.4-4 [59.8 kB] Get:310 http://mirror.bm.debian.org/debian/ jessie/main libdjvulibre21 amd64 3.5.25.4-4+b1 [578 kB] Get:311 http://mirror.bm.debian.org/debian/ jessie/main libisc-export95 amd64 1:9.9.5.dfsg-9+deb8u15 [141 kB] Get:312 http://mirror.bm.debian.org/debian/ jessie/main libdns-export100 amd64 1:9.9.5.dfsg-9+deb8u15 [457 kB] Get:313 http://mirror.bm.debian.org/debian/ jessie/main libdrm2 amd64 2.4.58-2 [29.9 kB] Get:314 http://mirror.bm.debian.org/debian/ jessie/main libpciaccess0 amd64 0.13.2-3+b1 [47.6 kB] Get:315 http://mirror.bm.debian.org/debian/ jessie/main libdrm-intel1 amd64 2.4.58-2 [64.9 kB] Get:316 http://mirror.bm.debian.org/debian/ jessie/main libdrm-nouveau2 amd64 2.4.58-2 [21.6 kB] Get:317 http://mirror.bm.debian.org/debian/ jessie/main libdrm-radeon1 amd64 2.4.58-2 [31.1 kB] Get:318 http://mirror.bm.debian.org/debian/ jessie/main libelf1 amd64 0.159-4.2 [160 kB] Get:319 http://mirror.bm.debian.org/debian/ jessie/main libelfg0 amd64 0.8.13-5 [51.6 kB] Get:320 http://mirror.bm.debian.org/debian/ jessie/main libexif12 amd64 0.6.21-2 [324 kB] Get:321 http://mirror.bm.debian.org/debian/ jessie/main libexiv2-13 amd64 0.24-4.1 [729 kB] Get:322 http://mirror.bm.debian.org/debian/ jessie/main libfftw3-double3 amd64 3.3.4-2 [722 kB] Get:323 http://mirror.bm.debian.org/debian/ jessie/main libflac8 amd64 1.3.0-3 [89.3 kB] Get:324 http://mirror.bm.debian.org/debian/ jessie/main libfontenc1 amd64 1:1.1.2-1+b2 [23.9 kB] Get:325 http://mirror.bm.debian.org/debian/ jessie/main libgflags2 amd64 2.0-2.1 [72.8 kB] Get:326 http://mirror.bm.debian.org/debian/ jessie/main libgif4 amd64 4.1.6-11+deb8u1 [40.0 kB] Get:327 http://mirror.bm.debian.org/debian/ jessie/main libllvm3.5 amd64 1:3.5-10 [7607 kB] Get:328 http://mirror.bm.debian.org/debian/ jessie/main libgl1-mesa-dri amd64 10.3.2-1+deb8u1 [3384 kB] Get:329 http://mirror.bm.debian.org/debian/ jessie/main libglapi-mesa amd64 10.3.2-1+deb8u1 [53.3 kB] Get:330 http://mirror.bm.debian.org/debian/ jessie/main libx11-xcb1 amd64 2:1.6.2-3+deb8u1 [163 kB] Get:331 http://mirror.bm.debian.org/debian/ jessie/main libxcb-dri2-0 amd64 1.10-3+b1 [12.9 kB] Get:332 http://mirror.bm.debian.org/debian/ jessie/main libxcb-dri3-0 amd64 1.10-3+b1 [11.1 kB] Get:333 http://mirror.bm.debian.org/debian/ jessie/main libxcb-glx0 amd64 1.10-3+b1 [27.4 kB] Get:334 http://mirror.bm.debian.org/debian/ jessie/main libxcb-present0 amd64 1.10-3+b1 [11.1 kB] Get:335 http://mirror.bm.debian.org/debian/ jessie/main libxcb-sync1 amd64 1.10-3+b1 [14.4 kB] Get:336 http://mirror.bm.debian.org/debian/ jessie/main libxshmfence1 amd64 1.1-4 [6736 B] Get:337 http://mirror.bm.debian.org/debian/ jessie/main libxxf86vm1 amd64 1:1.1.3-1+b1 [19.6 kB] Get:338 http://mirror.bm.debian.org/debian/ jessie/main libgl1-mesa-glx amd64 10.3.2-1+deb8u1 [180 kB] Get:339 http://mirror.bm.debian.org/debian/ jessie/main libglade2-0 amd64 1:2.6.4-2 [81.8 kB] Get:340 http://mirror.bm.debian.org/debian/ jessie/main libglpk36 amd64 4.55-1 [424 kB] Get:341 http://mirror.bm.debian.org/debian/ jessie/main libglu1-mesa amd64 9.0.0-2 [163 kB] Get:342 http://mirror.bm.debian.org/debian/ jessie/main libunwind8 amd64 1.1-3.2 [50.8 kB] Get:343 http://mirror.bm.debian.org/debian/ jessie/main libgoogle-glog0 amd64 0.3.3-2 [52.9 kB] Get:344 http://mirror.bm.debian.org/debian/ jessie/main libgphoto2-port10 amd64 2.5.4-1.1+b2 [146 kB] Get:345 http://mirror.bm.debian.org/debian/ jessie/main libgphoto2-6 amd64 2.5.4-1.1+b2 [823 kB] Get:346 http://mirror.bm.debian.org/debian/ jessie/main libharfbuzz-icu0 amd64 0.9.35-2 [360 kB] Get:347 http://mirror.bm.debian.org/debian/ jessie/main libieee1284-3 amd64 0.2.11-12 [28.9 kB] Get:348 http://mirror.bm.debian.org/debian/ jessie/main libijs-0.35 amd64 0.35-10 [20.0 kB] Get:349 http://mirror.bm.debian.org/debian/ jessie/main libilmbase6 amd64 1.0.1-6.1 [64.1 kB] Get:350 http://mirror.bm.debian.org/debian/ jessie/main libisccfg-export90 amd64 1:9.9.5.dfsg-9+deb8u15 [41.5 kB] Get:351 http://mirror.bm.debian.org/debian/ jessie/main libirs-export91 amd64 1:9.9.5.dfsg-9+deb8u15 [39.2 kB] Get:352 http://mirror.bm.debian.org/debian/ jessie/main libitm1 amd64 4.9.2-10+deb8u1 [29.3 kB] Get:353 http://mirror.bm.debian.org/debian/ jessie/main liblqr-1-0 amd64 0.4.2-2 [24.6 kB] Get:354 http://mirror.bm.debian.org/debian/ jessie/main liblsan0 amd64 4.9.2-10+deb8u1 [92.7 kB] Get:355 http://mirror.bm.debian.org/debian/ jessie/main liblua5.1-0 amd64 5.1.5-7.1 [108 kB] Get:356 http://mirror.bm.debian.org/debian/ jessie/main libmagickcore-6.q16-2 amd64 8:6.8.9.9-5+deb8u12 [1696 kB] Get:357 http://mirror.bm.debian.org/debian/ jessie/main libmagickwand-6.q16-2 amd64 8:6.8.9.9-5+deb8u12 [409 kB] Get:358 http://mirror.bm.debian.org/debian/ jessie/main libmng1 amd64 1.0.10+dfsg-3.1+b3 [217 kB] Get:359 http://mirror.bm.debian.org/debian/ jessie/main libmpfr4 amd64 3.1.2-2 [527 kB] Get:360 http://mirror.bm.debian.org/debian/ jessie/main mysql-common all 5.5.60-0+deb8u1 [75.4 kB] Get:361 http://mirror.bm.debian.org/debian/ jessie/main libmysqlclient18 amd64 5.5.60-0+deb8u1 [671 kB] Get:362 http://mirror.bm.debian.org/debian/ jessie/main ncbi-data all 6.1.20120620-8 [3320 kB] Get:363 http://mirror.bm.debian.org/debian/ jessie/main libncbi6 amd64 6.1.20120620-8 [3769 kB] Get:364 http://mirror.bm.debian.org/debian/ jessie/main libnotify4 amd64 0.7.6-2 [28.3 kB] Get:365 http://mirror.bm.debian.org/debian/ jessie/main libnspr4 amd64 2:4.12-1+debu8u1 [117 kB] Get:366 http://mirror.bm.debian.org/debian/ jessie/main libnss3 amd64 2:3.26-1+debu8u3 [1159 kB] Get:367 http://mirror.bm.debian.org/debian/ jessie/main libnuma1 amd64 2.0.10-1 [32.5 kB] Get:368 http://mirror.bm.debian.org/debian/ jessie/main libopenexr6 amd64 1.6.1-8 [183 kB] Get:369 http://mirror.bm.debian.org/debian/ jessie/main libossp-uuid16 amd64 1.6.2-1.5+b1 [38.0 kB] Get:370 http://mirror.bm.debian.org/debian/ jessie/main libpam-runtime all 1.1.8-3.1+deb8u2 [212 kB] Get:371 http://mirror.bm.debian.org/debian/ jessie/main dbus amd64 1.8.22-0+deb8u1 [292 kB] Get:372 http://mirror.bm.debian.org/debian/ jessie/main libcgmanager0 amd64 0.33-2+deb8u2 [40.7 kB] Get:373 http://mirror.bm.debian.org/debian/ jessie/main libnih1 amd64 1.0.3-4.3 [127 kB] Get:374 http://mirror.bm.debian.org/debian/ jessie/main libnih-dbus1 amd64 1.0.3-4.3 [97.1 kB] Get:375 http://mirror.bm.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:376 http://mirror.bm.debian.org/debian/ jessie/main cgmanager amd64 0.33-2+deb8u2 [78.5 kB] Get:377 http://mirror.bm.debian.org/debian/ jessie/main systemd-shim amd64 9-1 [18.1 kB] Get:378 http://mirror.bm.debian.org/debian/ jessie/main libpam-systemd amd64 215-17+deb8u7 [126 kB] Get:379 http://mirror.bm.debian.org/debian/ jessie/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:380 http://mirror.bm.debian.org/debian/ jessie/main libpcsclite1 amd64 1.8.13-1+deb8u1 [56.2 kB] Get:381 http://mirror.bm.debian.org/debian/ jessie/main libpolkit-gobject-1-0 amd64 0.105-15~deb8u2 [43.1 kB] Get:382 http://mirror.bm.debian.org/debian/ jessie/main libpolkit-agent-1-0 amd64 0.105-15~deb8u2 [24.0 kB] Get:383 http://mirror.bm.debian.org/debian/ jessie/main libpolkit-backend-1-0 amd64 0.105-15~deb8u2 [45.2 kB] Get:384 http://mirror.bm.debian.org/debian/ jessie/main libopenjpeg5 amd64 1:1.5.2-3 [111 kB] Get:385 http://mirror.bm.debian.org/debian/ jessie/main libpoppler46 amd64 0.26.5-2+deb8u4 [1211 kB] Get:386 http://mirror.bm.debian.org/debian/ jessie/main qtcore4-l10n all 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [654 kB] Get:387 http://mirror.bm.debian.org/debian/ jessie/main libqtcore4 amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [1606 kB] Get:388 http://mirror.bm.debian.org/debian/ jessie/main libqt4-xml amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [136 kB] Get:389 http://mirror.bm.debian.org/debian/ jessie/main libqtgui4 amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [4189 kB] Get:390 http://mirror.bm.debian.org/debian/ jessie/main libpoppler-qt4-4 amd64 0.26.5-2+deb8u4 [127 kB] Get:391 http://mirror.bm.debian.org/debian/ jessie/main libpq5 amd64 9.4.18-0+deb8u1 [128 kB] Get:392 http://mirror.bm.debian.org/debian/ jessie/main libpth20 amd64 2.0.7-20 [78.1 kB] Get:393 http://mirror.bm.debian.org/debian/ jessie/main libvorbisenc2 amd64 1.3.4-2+deb8u1 [77.8 kB] Get:394 http://mirror.bm.debian.org/debian/ jessie/main libsndfile1 amd64 1.0.25-9.1+deb8u1 [215 kB] Get:395 http://mirror.bm.debian.org/debian/ jessie/main libxtst6 amd64 2:1.2.2-1+deb8u1 [27.2 kB] Get:396 http://mirror.bm.debian.org/debian/ jessie/main libpulse0 amd64 5.0-13 [255 kB] Get:397 http://mirror.bm.debian.org/debian/ jessie/main libpython2.7 amd64 2.7.9-2+deb8u1 [1081 kB] Get:398 http://mirror.bm.debian.org/debian/ jessie/main libc-dev-bin amd64 2.19-18+deb8u10 [238 kB] Get:399 http://mirror.bm.debian.org/debian/ jessie/main linux-libc-dev amd64 3.16.56-1+deb8u1 [1096 kB] Get:400 http://mirror.bm.debian.org/debian/ jessie/main libc6-dev amd64 2.19-18+deb8u10 [2003 kB] Get:401 http://mirror.bm.debian.org/debian/ jessie/main libexpat1-dev amd64 2.1.0-6+deb8u4 [126 kB] Get:402 http://mirror.bm.debian.org/debian/ jessie/main libpython2.7-dev amd64 2.7.9-2+deb8u1 [18.6 MB] Get:403 http://mirror.bm.debian.org/debian/ jessie/main libsane-common all 1.0.24-8+deb8u2 [1000 kB] Get:404 http://mirror.bm.debian.org/debian/ jessie/main libv4lconvert0 amd64 1.6.0-2 [108 kB] Get:405 http://mirror.bm.debian.org/debian/ jessie/main libv4l-0 amd64 1.6.0-2 [71.8 kB] Get:406 http://mirror.bm.debian.org/debian/ jessie/main libsane amd64 1.0.24-8+deb8u2 [2039 kB] Get:407 http://mirror.bm.debian.org/debian/ jessie/main libsctp1 amd64 1.0.16+dfsg-2 [27.6 kB] Get:408 http://mirror.bm.debian.org/debian/ jessie/main libtcl8.6 amd64 8.6.2+dfsg-2 [978 kB] Get:409 http://mirror.bm.debian.org/debian/ jessie/main libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:410 http://mirror.bm.debian.org/debian/ jessie/main libtk8.6 amd64 8.6.2-1 [771 kB] Get:411 http://mirror.bm.debian.org/debian/ jessie/main libtre5 amd64 0.8.0-4+deb8u1 [57.8 kB] Get:412 http://mirror.bm.debian.org/debian/ jessie/main libtsan0 amd64 4.9.2-10+deb8u1 [212 kB] Get:413 http://mirror.bm.debian.org/debian/ jessie/main libubsan0 amd64 4.9.2-10+deb8u1 [82.4 kB] Get:414 http://mirror.bm.debian.org/debian/ jessie/main libwmf0.2-7 amd64 0.2.8.4-10.3+deb8u2 [163 kB] Get:415 http://mirror.bm.debian.org/debian/ jessie/main libwxbase3.0-0 amd64 3.0.2-1+b1 [1103 kB] Get:416 http://mirror.bm.debian.org/debian/ jessie/main libwxgtk3.0-0 amd64 3.0.2-1+b1 [4608 kB] Get:417 http://mirror.bm.debian.org/debian/ jessie/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:418 http://mirror.bm.debian.org/debian/ jessie/main libxaw7 amd64 2:1.0.12-2+b1 [199 kB] Get:419 http://mirror.bm.debian.org/debian/ jessie/main libxcb-shape0 amd64 1.10-3+b1 [11.6 kB] Get:420 http://mirror.bm.debian.org/debian/ jessie/main libxmuu1 amd64 2:1.1.2-1 [23.3 kB] Get:421 http://mirror.bm.debian.org/debian/ jessie/main libxslt1.1 amd64 1.1.28-2+deb8u3 [232 kB] Get:422 http://mirror.bm.debian.org/debian/ jessie/main libxv1 amd64 2:1.0.10-1+deb8u1 [23.9 kB] Get:423 http://mirror.bm.debian.org/debian/ jessie/main libxxf86dga1 amd64 2:1.1.4-1+b1 [22.3 kB] Get:424 http://mirror.bm.debian.org/debian/ jessie/main libyaml-0-2 amd64 0.1.6-3 [50.4 kB] Get:425 http://mirror.bm.debian.org/debian/ jessie/main libzzip-0-13 amd64 0.13.62-3+deb8u1 [55.6 kB] Get:426 http://mirror.bm.debian.org/debian/ jessie/main lua-filesystem amd64 1.6.2-3 [10.1 kB] Get:427 http://mirror.bm.debian.org/debian/ jessie/main lua-lpeg amd64 0.12-1 [26.7 kB] Get:428 http://mirror.bm.debian.org/debian/ jessie/main lua-md5 amd64 1.2+git+1+8d87fee-1 [13.1 kB] Get:429 http://mirror.bm.debian.org/debian/ jessie/main poppler-data all 0.4.7-1 [1491 kB] Get:430 http://mirror.bm.debian.org/debian/ jessie/main libblas-common amd64 1.2.20110419-10 [8496 B] Get:431 http://mirror.bm.debian.org/debian/ jessie/main libblas3 amd64 1.2.20110419-10 [167 kB] Get:432 http://mirror.bm.debian.org/debian/ jessie/main libatlas3-base amd64 3.10.2-7 [2725 kB] Get:433 http://mirror.bm.debian.org/debian/ jessie/main liblapack3 amd64 3.5.0-4 [1852 kB] Get:434 http://mirror.bm.debian.org/debian/ jessie/main libfreecontact0 amd64 1.0.21-3+b1 [85.9 kB] Get:435 http://mirror.bm.debian.org/debian/ jessie/main libhwloc5 amd64 1.10.0-3 [86.9 kB] Get:436 http://mirror.bm.debian.org/debian/ jessie/main libmpc3 amd64 1.0.2-1 [39.3 kB] Get:437 http://mirror.bm.debian.org/debian/ jessie/main libsystemd-login0 amd64 215-17+deb8u7 [49.8 kB] Get:438 http://mirror.bm.debian.org/debian/ jessie/main libtxc-dxtn-s2tc0 amd64 0~git20131104-1.1 [51.6 kB] Get:439 http://mirror.bm.debian.org/debian/ jessie/main libwebp5 amd64 0.4.1-1.2+b2 [201 kB] Get:440 http://mirror.bm.debian.org/debian/ jessie/main libwebpdemux1 amd64 0.4.1-1.2+b2 [50.7 kB] Get:441 http://mirror.bm.debian.org/debian/ jessie/main libwebpmux1 amd64 0.4.1-1.2+b2 [57.2 kB] Get:442 http://mirror.bm.debian.org/debian/ jessie/main ocl-icd-libopencl1 amd64 2.2.3-1+deb8u1 [33.6 kB] Get:443 http://mirror.bm.debian.org/debian/ jessie/main multiarch-support amd64 2.19-18+deb8u10 [181 kB] Get:444 http://mirror.bm.debian.org/debian/ jessie/main dmidecode amd64 2.12-3 [64.4 kB] Get:445 http://mirror.bm.debian.org/debian/ jessie/main isc-dhcp-common amd64 4.3.1-6+deb8u3 [211 kB] Get:446 http://mirror.bm.debian.org/debian/ jessie/main isc-dhcp-client amd64 4.3.1-6+deb8u3 [250 kB] Get:447 http://mirror.bm.debian.org/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1 [67.6 kB] Get:448 http://mirror.bm.debian.org/debian/ jessie/main manpages all 3.74-1 [997 kB] Get:449 http://mirror.bm.debian.org/debian/ jessie/main debconf-i18n all 1.5.56+deb8u1 [206 kB] Get:450 http://mirror.bm.debian.org/debian/ jessie/main bc amd64 1.06.95-9 [103 kB] Get:451 http://mirror.bm.debian.org/debian/ jessie/main krb5-locales all 1.12.1+dfsg-19+deb8u4 [2649 kB] Get:452 http://mirror.bm.debian.org/debian/ jessie/main libclass-isa-perl all 0.36-5 [10.1 kB] Get:453 http://mirror.bm.debian.org/debian/ jessie/main libswitch-perl all 2.17-2 [20.5 kB] Get:454 http://mirror.bm.debian.org/debian/ jessie/main xz-utils amd64 5.1.1alpha+20120614-2+b3 [221 kB] Get:455 http://mirror.bm.debian.org/debian/ jessie/main aevol amd64 4.4-1 [403 kB] Get:456 http://mirror.bm.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u8 [664 kB] Get:457 http://mirror.bm.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:458 http://mirror.bm.debian.org/debian/ jessie/main ca-certificates-java all 20140324 [13.7 kB] Get:459 http://mirror.bm.debian.org/debian/ jessie/main tzdata-java all 2018e-0+deb8u1 [82.8 kB] Get:460 http://mirror.bm.debian.org/debian/ jessie/main java-common all 0.52 [136 kB] Get:461 http://mirror.bm.debian.org/debian/ jessie/main openjdk-7-jre-headless amd64 7u181-2.6.14-1~deb8u1 [39.9 MB] Get:462 http://mirror.bm.debian.org/debian/ jessie/main default-jre-headless amd64 2:1.7-52 [9072 B] Get:463 http://mirror.bm.debian.org/debian/ jessie/main openjdk-7-jre amd64 7u181-2.6.14-1~deb8u1 [176 kB] Get:464 http://mirror.bm.debian.org/debian/ jessie/main default-jre amd64 2:1.7-52 [968 B] Get:465 http://mirror.bm.debian.org/debian/ jessie/main libbytecode-java all 0.92.svn.20090106-1.1 [87.7 kB] Get:466 http://mirror.bm.debian.org/debian/ jessie/main libcommons-pool-java all 1.6-2 [105 kB] Get:467 http://mirror.bm.debian.org/debian/ jessie/main libcommons-collections3-java all 3.2.1-7+deb8u1 [597 kB] Get:468 http://mirror.bm.debian.org/debian/ jessie/main libcommons-dbcp-java all 1.4-5 [155 kB] Get:469 http://mirror.bm.debian.org/debian/ jessie/main libservlet2.5-java all 6.0.45+dfsg-1~deb8u1 [220 kB] Get:470 http://mirror.bm.debian.org/debian/ jessie/main libhsqldb-java all 2.2.9+dfsg-4 [1405 kB] Get:471 http://mirror.bm.debian.org/debian/ jessie/main libbiojava1.7-java all 1:1.7.1-5 [3160 kB] Get:472 http://mirror.bm.debian.org/debian/ jessie/main libbiojava-java all 1:1.7.1-5 [48.4 kB] Get:473 http://mirror.bm.debian.org/debian/ jessie/main libapache-pom-java all 10-2 [3870 B] Get:474 http://mirror.bm.debian.org/debian/ jessie/main libcommons-parent-java all 22-2 [6786 B] Get:475 http://mirror.bm.debian.org/debian/ jessie/main libcommons-lang-java all 2.6-4 [269 kB] Get:476 http://mirror.bm.debian.org/debian/ jessie/main libcommons-cli-java all 1.2-3 [39.2 kB] Get:477 http://mirror.bm.debian.org/debian/ jessie/main alien-hunter all 1.7-3 [27.9 kB] Get:478 http://mirror.bm.debian.org/debian/ jessie/main libgsl0ldbl amd64 1.16+dfsg-2 [819 kB] Get:479 http://mirror.bm.debian.org/debian/ jessie/main libtamuanova-0.2 amd64 0.2-3 [8214 B] Get:480 http://mirror.bm.debian.org/debian/ jessie/main libmath-tamuanova-perl amd64 1.0.2-2+b2 [14.3 kB] Get:481 http://mirror.bm.debian.org/debian/ jessie/main altree amd64 1.3.1-2+b1 [341 kB] Get:482 http://mirror.bm.debian.org/debian/ jessie/main amap-align amd64 2.2-4 [132 kB] Get:483 http://mirror.bm.debian.org/debian/ jessie/main libelk0 amd64 3.99.8-2.1 [163 kB] Get:484 http://mirror.bm.debian.org/debian/ jessie/main libprotobuf9 amd64 2.6.1-1 [361 kB] Get:485 http://mirror.bm.debian.org/debian/ jessie/main libanfo0 amd64 0.98-4+b1 [289 kB] Get:486 http://mirror.bm.debian.org/debian/ jessie/main anfo amd64 0.98-4+b1 [119 kB] Get:487 http://mirror.bm.debian.org/debian/ jessie/main ant all 1.9.4-3 [1888 kB] Get:488 http://mirror.bm.debian.org/debian/ jessie/main ant-optional all 1.9.4-3 [316 kB] Get:489 http://mirror.bm.debian.org/debian/ jessie/main libaprutil1-dbd-sqlite3 amd64 1.5.4-1 [19.1 kB] Get:490 http://mirror.bm.debian.org/debian/ jessie/main libaprutil1-ldap amd64 1.5.4-1 [17.2 kB] Get:491 http://mirror.bm.debian.org/debian/ jessie/main apache2-bin amd64 2.4.10-10+deb8u12 [1042 kB] Get:492 http://mirror.bm.debian.org/debian/ jessie/main aragorn amd64 1.2.36-4 [96.8 kB] Get:493 http://mirror.bm.debian.org/debian/ jessie/main python-decorator all 3.4.0-2 [22.3 kB] Get:494 http://mirror.bm.debian.org/debian/ jessie/main python-numpy amd64 1:1.8.2-2 [1630 kB] Get:495 http://mirror.bm.debian.org/debian/ jessie/main python-scipy amd64 0.14.0-2 [8144 kB] Get:496 http://mirror.bm.debian.org/debian/ jessie/main python-htseq amd64 0.5.4p3-2 [168 kB] Get:497 http://mirror.bm.debian.org/debian/ jessie/main python-six all 1.8.0-1 [12.6 kB] Get:498 http://mirror.bm.debian.org/debian/ jessie/main python-dateutil all 2.2-2 [51.3 kB] Get:499 http://mirror.bm.debian.org/debian/ jessie/main fonts-lyx all 2.1.2-2 [176 kB] Get:500 http://mirror.bm.debian.org/debian/ jessie/main python-matplotlib-data all 1.4.2-3.1 [3041 kB] Get:501 http://mirror.bm.debian.org/debian/ jessie/main python-pyparsing all 2.0.3+dfsg1-1 [64.0 kB] Get:502 http://mirror.bm.debian.org/debian/ jessie/main python-tz all 2012c+dfsg-0.1 [31.9 kB] Get:503 http://mirror.bm.debian.org/debian/ jessie/main libjs-jquery all 1.7.2+dfsg-3.2 [97.5 kB] Get:504 http://mirror.bm.debian.org/debian/ jessie/main libjs-jquery-ui all 1.10.1+dfsg-1 [499 kB] Get:505 http://mirror.bm.debian.org/debian/ jessie/main python-mock all 1.0.1-3 [33.2 kB] Get:506 http://mirror.bm.debian.org/debian/ jessie/main python-pkg-resources all 5.5.1-1 [64.4 kB] Get:507 http://mirror.bm.debian.org/debian/ jessie/main python-nose all 1.3.4-1 [134 kB] Get:508 http://mirror.bm.debian.org/debian/ jessie/main python-matplotlib amd64 1.4.2-3.1 [3780 kB] Get:509 http://mirror.bm.debian.org/debian/ jessie/main arden amd64 1.0-1 [90.5 kB] Get:510 http://mirror.bm.debian.org/debian/ jessie/main at-spi2-core amd64 2.14.0-1 [46.6 kB] Get:511 http://mirror.bm.debian.org/debian/ jessie/main autodock amd64 4.2.6-2 [158 kB] Get:512 http://mirror.bm.debian.org/debian/ jessie/main autogrid amd64 4.2.6-2 [45.8 kB] Get:513 http://mirror.bm.debian.org/debian/ jessie/main libbamtools2.3.0 amd64 2.3.0+dfsg-2 [164 kB] Get:514 http://mirror.bm.debian.org/debian/ jessie/main libjsoncpp0 amd64 0.6.0~rc2-3.1 [71.8 kB] Get:515 http://mirror.bm.debian.org/debian/ jessie/main bamtools amd64 2.3.0+dfsg-2 [182 kB] Get:516 http://mirror.bm.debian.org/debian/ jessie/main bedtools amd64 2.21.0-1 [608 kB] Get:517 http://mirror.bm.debian.org/debian/ jessie/main binutils amd64 2.25-5+deb8u1 [3496 kB] Get:518 http://mirror.bm.debian.org/debian/ jessie/main ant-contrib all 1.0~b3+svn177-6 [255 kB] Get:519 http://mirror.bm.debian.org/debian/ jessie/main libhamcrest-java all 1.3-5 [387 kB] Get:520 http://mirror.bm.debian.org/debian/ jessie/main junit4 all 4.11-3 [224 kB] Get:521 http://mirror.bm.debian.org/debian/ jessie/main libcommons-codec-java all 1.9-1 [215 kB] Get:522 http://mirror.bm.debian.org/debian/ jessie/main libcommons-logging-java all 1.2-1 [62.1 kB] Get:523 http://mirror.bm.debian.org/debian/ jessie/main libcommons-httpclient-java all 3.1-11+deb8u1 [298 kB] Get:524 http://mirror.bm.debian.org/debian/ jessie/main libcommons-net2-java all 2.2-2 [193 kB] Get:525 http://mirror.bm.debian.org/debian/ jessie/main libmail-java all 1.5.2-3 [601 kB] Get:526 http://mirror.bm.debian.org/debian/ jessie/main libjcommon-java all 1.0.16-4 [455 kB] Get:527 http://mirror.bm.debian.org/debian/ jessie/main libjaxen-java all 1.1.6-1 [209 kB] Get:528 http://mirror.bm.debian.org/debian/ jessie/main libjdom1-java all 1.1.3-1 [150 kB] Get:529 http://mirror.bm.debian.org/debian/ jessie/main libwsdl4j-java all 1.6.3-1 [177 kB] Get:530 http://mirror.bm.debian.org/debian/ jessie/main libcommons-discovery-java all 0.5-3 [136 kB] Get:531 http://mirror.bm.debian.org/debian/ jessie/main libaxis-java all 1.4-22 [1495 kB] Get:532 http://mirror.bm.debian.org/debian/ jessie/main libjava-xmlbuilder-java all 0.4-2 [20.2 kB] Get:533 http://mirror.bm.debian.org/debian/ jessie/main libjets3t-java all 0.8.1+dfsg-1 [479 kB] Get:534 http://mirror.bm.debian.org/debian/ jessie/main libjgoodies-common-java all 1.4.0-2 [32.4 kB] Get:535 http://mirror.bm.debian.org/debian/ jessie/main libjgoodies-forms-java all 1.6.0-4 [126 kB] Get:536 http://mirror.bm.debian.org/debian/ jessie/main libjzlib-java all 1.1.3-1 [69.9 kB] Get:537 http://mirror.bm.debian.org/debian/ jessie/main libjsch-java all 0.1.51-1 [268 kB] Get:538 http://mirror.bm.debian.org/debian/ jessie/main liblog4j1.2-java all 1.2.17-5 [386 kB] Get:539 http://mirror.bm.debian.org/debian/ jessie/main libmysql-java all 5.1.42-1~deb8u1 [1037 kB] Get:540 http://mirror.bm.debian.org/debian/ jessie/main liboro-java all 2.0.8a-9 [70.2 kB] Get:541 http://mirror.bm.debian.org/debian/ jessie/main libregexp-java all 1.5-3 [35.5 kB] Get:542 http://mirror.bm.debian.org/debian/ jessie/main libisorelax-java all 20041111-8 [63.3 kB] Get:543 http://mirror.bm.debian.org/debian/ jessie/main librelaxng-datatype-java all 1.0+ds1-3 [11.7 kB] Get:544 http://mirror.bm.debian.org/debian/ jessie/main libxml-commons-resolver1.1-java all 1.2-7 [91.9 kB] Get:545 http://mirror.bm.debian.org/debian/ jessie/main libxml-commons-external-java all 1.4.01-2 [245 kB] Get:546 http://mirror.bm.debian.org/debian/ jessie/main libxerces2-java all 2.11.0-7 [1365 kB] Get:547 http://mirror.bm.debian.org/debian/ jessie/main libmsv-java all 2009.1+dfsg1-4 [788 kB] Get:548 http://mirror.bm.debian.org/debian/ jessie/main libxpp2-java all 2.1.10-7 [147 kB] Get:549 http://mirror.bm.debian.org/debian/ jessie/main libxpp3-java all 1.1.4c-2 [349 kB] Get:550 http://mirror.bm.debian.org/debian/ jessie/main libdom4j-java all 1.6.1+dfsg.3-2 [353 kB] Get:551 http://mirror.bm.debian.org/debian/ jessie/main libxom-java all 1.2.10-1 [170 kB] Get:552 http://mirror.bm.debian.org/debian/ jessie/main libsaxonb-java all 9.1.0.8+dfsg-1 [1871 kB] Get:553 http://mirror.bm.debian.org/debian/ jessie/main libdbi-perl amd64 1.631-3+b1 [816 kB] Get:554 http://mirror.bm.debian.org/debian/ jessie/main libdbd-mysql-perl amd64 4.028-2+deb8u2 [119 kB] Get:555 http://mirror.bm.debian.org/debian/ jessie/main libterm-readkey-perl amd64 2.32-1+b1 [28.0 kB] Get:556 http://mirror.bm.debian.org/debian/ jessie/main mysql-client-5.5 amd64 5.5.60-0+deb8u1 [1657 kB] Get:557 http://mirror.bm.debian.org/debian/ jessie/main mysql-client all 5.5.60-0+deb8u1 [73.6 kB] Get:558 http://mirror.bm.debian.org/debian/ jessie/main biomaj all 1.2.3-4 [4279 kB] Get:559 http://mirror.bm.debian.org/debian/ jessie/main libdata-stag-perl all 0.13-1 [476 kB] Get:560 http://mirror.bm.debian.org/debian/ jessie/main libbio-perl-perl all 1.6.924-1 [4763 kB] Get:561 http://mirror.bm.debian.org/debian/ jessie/main bioperl all 1.6.924-1 [419 kB] Get:562 http://mirror.bm.debian.org/debian/ jessie/main libbio-perl-run-perl all 1.6.9-2 [753 kB] Get:563 http://mirror.bm.debian.org/debian/ jessie/main bioperl-run all 1.6.9-2 [44.0 kB] Get:564 http://mirror.bm.debian.org/debian/ jessie/main biosquid amd64 1.9g+cvs20050121-4 [183 kB] Get:565 http://mirror.bm.debian.org/debian/ jessie/main blast2 amd64 1:2.2.26.20120620-8 [559 kB] Get:566 http://mirror.bm.debian.org/debian/ jessie/main menu amd64 2.1.47 [381 kB] Get:567 http://mirror.bm.debian.org/debian/ jessie/main blends-common all 0.6.92.2 [22.3 kB] Get:568 http://mirror.bm.debian.org/debian/ jessie/main tk8.6-blt2.5 amd64 2.5.3+dfsg-1 [586 kB] Get:569 http://mirror.bm.debian.org/debian/ jessie/main blt amd64 2.5.3+dfsg-1 [14.3 kB] Get:570 http://mirror.bm.debian.org/debian/ jessie/main boxshade amd64 3.3.1-8 [52.5 kB] Get:571 http://mirror.bm.debian.org/debian/ jessie/main bwa amd64 0.7.10-1 [169 kB] Get:572 http://mirror.bm.debian.org/debian/ jessie/main libcassie1 amd64 1.0.1+dfsg-3+b1 [36.5 kB] Get:573 http://mirror.bm.debian.org/debian/ jessie/main cassiopee amd64 1.0.1+dfsg-3+b1 [12.3 kB] Get:574 http://mirror.bm.debian.org/debian/ jessie/main cd-hit amd64 4.6.1-2012-08-27-2 [417 kB] Get:575 http://mirror.bm.debian.org/debian/ jessie/main cdbfasta amd64 0.99-20100722-1 [82.4 kB] Get:576 http://mirror.bm.debian.org/debian/ jessie/main clearcut amd64 1.0.9-1 [282 kB] Get:577 http://mirror.bm.debian.org/debian/ jessie/main clonalframe amd64 1.2-3 [55.0 kB] Get:578 http://mirror.bm.debian.org/debian/ jessie/main libargtable2-0 amd64 12-1.1 [17.2 kB] Get:579 http://mirror.bm.debian.org/debian/ jessie/main clustalo amd64 1.2.1-1 [251 kB] Get:580 http://mirror.bm.debian.org/debian/ jessie/main clustalw amd64 2.1+lgpl-4 [276 kB] Get:581 http://mirror.bm.debian.org/debian/ jessie/main policykit-1 amd64 0.105-15~deb8u2 [62.2 kB] Get:582 http://mirror.bm.debian.org/debian/ jessie/main colord-data all 1.2.1-1 [1213 kB] Get:583 http://mirror.bm.debian.org/debian/ jessie/main colord amd64 1.2.1-1+b2 [297 kB] Get:584 http://mirror.bm.debian.org/debian/ jessie/main cpp-4.9 amd64 4.9.2-10+deb8u1 [5002 kB] Get:585 http://mirror.bm.debian.org/debian/ jessie/main cpp amd64 4:4.9.2-2 [17.3 kB] Get:586 http://mirror.bm.debian.org/debian/ jessie/main cython amd64 0.21.1-1 [1518 kB] Get:587 http://mirror.bm.debian.org/debian/ jessie/main dialign amd64 2.2.1-7 [135 kB] Get:588 http://mirror.bm.debian.org/debian/ jessie/main dialign-tx-data all 1.0.2-7 [880 kB] Get:589 http://mirror.bm.debian.org/debian/ jessie/main dialign-tx amd64 1.0.2-7 [83.0 kB] Get:590 http://mirror.bm.debian.org/debian/ jessie/main discosnp amd64 1.2.5-1 [140 kB] Get:591 http://mirror.bm.debian.org/debian/ jessie/main dnaclust amd64 3-2+b1 [86.2 kB] Get:592 http://mirror.bm.debian.org/debian/ jessie/main dssp amd64 2.2.1-2+b1 [167 kB] Get:593 http://mirror.bm.debian.org/debian/ jessie/main libkpathsea6 amd64 2014.20140926.35254-6 [154 kB] Get:594 http://mirror.bm.debian.org/debian/ jessie/main libptexenc1 amd64 2014.20140926.35254-6 [54.1 kB] Get:595 http://mirror.bm.debian.org/debian/ jessie/main ghostscript amd64 9.06~dfsg-2+deb8u7 [85.1 kB] Get:596 http://mirror.bm.debian.org/debian/ jessie/main libjbig2dec0 amd64 0.13-4~deb8u2 [60.2 kB] Get:597 http://mirror.bm.debian.org/debian/ jessie/main libgs9 amd64 9.06~dfsg-2+deb8u7 [1918 kB] Get:598 http://mirror.bm.debian.org/debian/ jessie/main libgs9-common all 9.06~dfsg-2+deb8u7 [1981 kB] Get:599 http://mirror.bm.debian.org/debian/ jessie/main libpotrace0 amd64 1.12-1+deb8u1 [25.2 kB] Get:600 http://mirror.bm.debian.org/debian/ jessie/main libsynctex1 amd64 2014.20140926.35254-6 [61.1 kB] Get:601 http://mirror.bm.debian.org/debian/ jessie/main tex-common all 5.03 [625 kB] Get:602 http://mirror.bm.debian.org/debian/ jessie/main texlive-binaries amd64 2014.20140926.35254-6 [6782 kB] Get:603 http://mirror.bm.debian.org/debian/ jessie/main dvipng amd64 1.14-2+b1 [84.4 kB] Get:604 http://mirror.bm.debian.org/debian/ jessie/main libhpdf-2.2.1 amd64 2.2.1-1.1 [322 kB] Get:605 http://mirror.bm.debian.org/debian/ jessie/main emboss-lib amd64 6.6.0+dfsg-1 [3102 kB] Get:606 http://mirror.bm.debian.org/debian/ jessie/main emboss-data all 6.6.0+dfsg-1 [60.8 MB] Get:607 http://mirror.bm.debian.org/debian/ jessie/main emboss amd64 6.6.0+dfsg-1 [1023 kB] Get:608 http://mirror.bm.debian.org/debian/ jessie/main exonerate amd64 2.2.0-6 [3053 kB] Get:609 http://mirror.bm.debian.org/debian/ jessie/main fastdnaml amd64 1.2.2-10 [64.3 kB] Get:610 http://mirror.bm.debian.org/debian/ jessie/main fastlink amd64 4.1P-fix95-3 [415 kB] Get:611 http://mirror.bm.debian.org/debian/ jessie/main libcommons-math3-java all 3.3-1 [1729 kB] Get:612 http://mirror.bm.debian.org/debian/ jessie/main libjbzip2-java all 0.9.1-3 [39.9 kB] Get:613 http://mirror.bm.debian.org/debian/ jessie/main libsam-java all 1.113-1 [200 kB] Get:614 http://mirror.bm.debian.org/debian/ jessie/main fastqc all 0.11.2+dfsg-3 [360 kB] Get:615 http://mirror.bm.debian.org/debian/ jessie/main libgtextutils0 amd64 0.7-2 [18.9 kB] Get:616 http://mirror.bm.debian.org/debian/ jessie/main libgd-text-perl all 0.86-9 [41.4 kB] Get:617 http://mirror.bm.debian.org/debian/ jessie/main libgd-graph-perl all 1.48-2 [389 kB] Get:618 http://mirror.bm.debian.org/debian/ jessie/main libperlio-gzip-perl amd64 0.18-3+b1 [17.9 kB] Get:619 http://mirror.bm.debian.org/debian/ jessie/main fastx-toolkit amd64 0.0.14-1 [85.2 kB] Get:620 http://mirror.bm.debian.org/debian/ jessie/main filo amd64 1.1+2011123001.1 [44.6 kB] Get:621 http://mirror.bm.debian.org/debian/ jessie/main python-pyrex all 0.9.8.5-2.1 [222 kB] Get:622 http://mirror.bm.debian.org/debian/ jessie/main python-pysam amd64 0.7.7-1 [596 kB] Get:623 http://mirror.bm.debian.org/debian/ jessie/main fitgcp amd64 0.0.20130418-2 [12.2 kB] Get:624 http://mirror.bm.debian.org/debian/ jessie/main libtbb2 amd64 4.2~20140122-5 [121 kB] Get:625 http://mirror.bm.debian.org/debian/ jessie/main flexbar amd64 2.50-1 [238 kB] Get:626 http://mirror.bm.debian.org/debian/ jessie/main fonts-cabin all 1.5-2 [139 kB] Get:627 http://mirror.bm.debian.org/debian/ jessie/main fonts-comfortaa all 2.003-1 [133 kB] Get:628 http://mirror.bm.debian.org/debian/ jessie/main fonts-crosextra-caladea all 20130214-1 [82.1 kB] Get:629 http://mirror.bm.debian.org/debian/ jessie/main fonts-crosextra-carlito all 20130920-1 [745 kB] Get:630 http://mirror.bm.debian.org/debian/ jessie/main fonts-dejavu-extra all 2.34-1 [1771 kB] Get:631 http://mirror.bm.debian.org/debian/ jessie/main fonts-ebgaramond all 0.015+git20130628-3 [415 kB] Get:632 http://mirror.bm.debian.org/debian/ jessie/main fonts-ebgaramond-extra all 0.015+git20130628-3 [680 kB] Get:633 http://mirror.bm.debian.org/debian/ jessie/main fonts-font-awesome all 4.2.0~dfsg-1 [346 kB] Get:634 http://mirror.bm.debian.org/debian/ jessie/main fonts-freefont-otf all 20120503-4 [3186 kB] Get:635 http://mirror.bm.debian.org/debian/ jessie/main fonts-freefont-ttf all 20120503-4 [4262 kB] Get:636 http://mirror.bm.debian.org/debian/ jessie/main fonts-gfs-artemisia all 1.1-5 [259 kB] Get:637 http://mirror.bm.debian.org/debian/ jessie/main fonts-gfs-complutum all 1.1-6 [41.6 kB] Get:638 http://mirror.bm.debian.org/debian/ jessie/main fonts-gfs-didot all 1.1-6 [278 kB] Get:639 http://mirror.bm.debian.org/debian/ jessie/main fonts-gfs-neohellenic all 1.1-6 [215 kB] Get:640 http://mirror.bm.debian.org/debian/ jessie/main fonts-gfs-olga all 1.1-5 [33.2 kB] Get:641 http://mirror.bm.debian.org/debian/ jessie/main fonts-gfs-solomos all 1.1-5 [40.6 kB] Get:642 http://mirror.bm.debian.org/debian/ jessie/main fonts-inconsolata all 001.010-5 [61.6 kB] Get:643 http://mirror.bm.debian.org/debian/ jessie/main fonts-junicode all 0.7.8-2 [643 kB] Get:644 http://mirror.bm.debian.org/debian/ jessie/main fonts-linuxlibertine all 5.3.0-2 [1713 kB] Get:645 http://mirror.bm.debian.org/debian/ jessie/main fonts-lmodern all 2.004.4-5 [4539 kB] Get:646 http://mirror.bm.debian.org/debian/ jessie/main fonts-lobster all 2.0-2 [39.5 kB] Get:647 http://mirror.bm.debian.org/debian/ jessie/main fonts-lobstertwo all 2.0-2 [94.0 kB] Get:648 http://mirror.bm.debian.org/debian/ jessie/main fonts-oflb-asana-math all 000.907-6 [245 kB] Get:649 http://mirror.bm.debian.org/debian/ jessie/main fonts-sil-gentium all 20081126:1.02-13 [241 kB] Get:650 http://mirror.bm.debian.org/debian/ jessie/main fonts-sil-gentium-basic all 1.1-7 [382 kB] Get:651 http://mirror.bm.debian.org/debian/ jessie/main fonts-texgyre all 20140520-1 [7943 kB] Get:652 http://mirror.bm.debian.org/debian/ jessie/main libgcc-4.9-dev amd64 4.9.2-10+deb8u1 [2066 kB] Get:653 http://mirror.bm.debian.org/debian/ jessie/main gcc-4.9 amd64 4.9.2-10+deb8u1 [5184 kB] Get:654 http://mirror.bm.debian.org/debian/ jessie/main gcc amd64 4:4.9.2-2 [5136 B] Get:655 http://mirror.bm.debian.org/debian/ jessie/main libstdc++-4.9-dev amd64 4.9.2-10+deb8u1 [1120 kB] Get:656 http://mirror.bm.debian.org/debian/ jessie/main g++-4.9 amd64 4.9.2-10+deb8u1 [17.3 MB] Get:657 http://mirror.bm.debian.org/debian/ jessie/main g++ amd64 4:4.9.2-2 [1530 B] Get:658 http://mirror.bm.debian.org/debian/ jessie/main python-reportlab-accel amd64 3.1.8-3+deb8u1 [25.7 kB] Get:659 http://mirror.bm.debian.org/debian/ jessie/main python-reportlab all 3.1.8-3+deb8u1 [453 kB] Get:660 http://mirror.bm.debian.org/debian/ jessie/main python-biopython amd64 1.64+dfsg-5 [1165 kB] Get:661 http://mirror.bm.debian.org/debian/ jessie/main bowtie amd64 1.1.1-2 [1369 kB] Get:662 http://mirror.bm.debian.org/debian/ jessie/main bowtie2 amd64 2.2.4-1 [1086 kB] Get:663 http://mirror.bm.debian.org/debian/ jessie/main seqan-apps amd64 1.4.1+dfsg-2 [7487 kB] Get:664 http://mirror.bm.debian.org/debian/ jessie/main gasic amd64 0.0.r18-2 [19.9 kB] Get:665 http://mirror.bm.debian.org/debian/ jessie/main libglpk-java amd64 1.0.37-1 [784 kB] Get:666 http://mirror.bm.debian.org/debian/ jessie/main glpk-utils amd64 4.55-1 [159 kB] Get:667 http://mirror.bm.debian.org/debian/ jessie/main tophat amd64 2.0.13+dfsg-1 [717 kB] Get:668 http://mirror.bm.debian.org/debian/ jessie/main giira amd64 0.0.20140210-2 [141 kB] Get:669 http://mirror.bm.debian.org/debian/ jessie/main libcdt5 amd64 2.38.0-7 [62.7 kB] Get:670 http://mirror.bm.debian.org/debian/ jessie/main libcgraph6 amd64 2.38.0-7 [85.2 kB] Get:671 http://mirror.bm.debian.org/debian/ jessie/main libpathplan4 amd64 2.38.0-7 [66.0 kB] Get:672 http://mirror.bm.debian.org/debian/ jessie/main libxdot4 amd64 2.38.0-7 [58.7 kB] Get:673 http://mirror.bm.debian.org/debian/ jessie/main libgvc6 amd64 2.38.0-7 [637 kB] Get:674 http://mirror.bm.debian.org/debian/ jessie/main libgvpr2 amd64 2.38.0-7 [212 kB] Get:675 http://mirror.bm.debian.org/debian/ jessie/main graphviz amd64 2.38.0-7 [717 kB] Get:676 http://mirror.bm.debian.org/debian/ jessie/main libgetopt-euclid-perl all 0.4.5-1 [47.3 kB] Get:677 http://mirror.bm.debian.org/debian/ jessie/main libmath-random-mt-perl amd64 1.16-1+b2 [15.7 kB] Get:678 http://mirror.bm.debian.org/debian/ jessie/main grinder all 0.5.3-3 [81.6 kB] Get:679 http://mirror.bm.debian.org/debian/ jessie/main hmmer amd64 3.1b1-3 [1026 kB] Get:680 http://mirror.bm.debian.org/debian/ jessie/main idba amd64 1.1.2-1 [279 kB] Get:681 http://mirror.bm.debian.org/debian/ jessie/main imagemagick-6.q16 amd64 8:6.8.9.9-5+deb8u12 [515 kB] Get:682 http://mirror.bm.debian.org/debian/ jessie/main imagemagick amd64 8:6.8.9.9-5+deb8u12 [160 kB] Get:683 http://mirror.bm.debian.org/debian/ jessie/main infernal amd64 1.1.1-2 [1862 kB] Get:684 http://mirror.bm.debian.org/debian/ jessie/main python-pexpect all 3.2-1 [38.4 kB] Get:685 http://mirror.bm.debian.org/debian/ jessie/main python-simplegeneric all 0.8.1-1 [11.9 kB] Get:686 http://mirror.bm.debian.org/debian/ jessie/main ipython all 2.3.0-2 [616 kB] Get:687 http://mirror.bm.debian.org/debian/ jessie/main javascript-common all 11 [6120 B] Get:688 http://mirror.bm.debian.org/debian/ jessie/main kalign amd64 1:2.03+20110620-2 [94.8 kB] Get:689 http://mirror.bm.debian.org/debian/ jessie/main kissplice amd64 2.2.1-3 [601 kB] Get:690 http://mirror.bm.debian.org/debian/ jessie/main last-align amd64 490-1 [458 kB] Get:691 http://mirror.bm.debian.org/debian/ jessie/main liberror-perl all 0.17-1.1 [22.4 kB] Get:692 http://mirror.bm.debian.org/debian/ jessie/main libipc-sharelite-perl amd64 0.17-3+b2 [24.9 kB] Get:693 http://mirror.bm.debian.org/debian/ jessie/main libcache-cache-perl all 1.07-2 [76.2 kB] Get:694 http://mirror.bm.debian.org/debian/ jessie/main libace-perl amd64 1.92-3+b1 [310 kB] Get:695 http://mirror.bm.debian.org/debian/ jessie/main libalgorithm-c3-perl all 0.09-1 [11.9 kB] Get:696 http://mirror.bm.debian.org/debian/ jessie/main libalgorithm-diff-perl all 1.19.02-3 [51.7 kB] Get:697 http://mirror.bm.debian.org/debian/ jessie/main libalgorithm-diff-xs-perl amd64 0.04-3+b1 [12.2 kB] Get:698 http://mirror.bm.debian.org/debian/ jessie/main libalgorithm-munkres-perl all 0.08-2 [12.5 kB] Get:699 http://mirror.bm.debian.org/debian/ jessie/main libperl5.20 amd64 5.20.2-3+deb8u11 [1362 B] Get:700 http://mirror.bm.debian.org/debian/ jessie/main libdevel-symdump-perl all 2.12-1 [17.1 kB] Get:701 http://mirror.bm.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:702 http://mirror.bm.debian.org/debian/ jessie/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:703 http://mirror.bm.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:704 http://mirror.bm.debian.org/debian/ jessie/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:705 http://mirror.bm.debian.org/debian/ jessie/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:706 http://mirror.bm.debian.org/debian/ jessie/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:707 http://mirror.bm.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:708 http://mirror.bm.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:709 http://mirror.bm.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:710 http://mirror.bm.debian.org/debian/ jessie/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:711 http://mirror.bm.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:712 http://mirror.bm.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:713 http://mirror.bm.debian.org/debian/ jessie/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:714 http://mirror.bm.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:715 http://mirror.bm.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:716 http://mirror.bm.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:717 http://mirror.bm.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:718 http://mirror.bm.debian.org/debian/ jessie/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:719 http://mirror.bm.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:720 http://mirror.bm.debian.org/debian/ jessie/main libapache2-mod-perl2 amd64 2.0.9~1624218-2+deb8u2 [903 kB] Get:721 http://mirror.bm.debian.org/debian/ jessie/main libapache-dbi-perl all 1.12-1 [54.6 kB] Get:722 http://mirror.bm.debian.org/debian/ jessie/main libapache2-reload-perl all 0.12-3 [17.3 kB] Get:723 http://mirror.bm.debian.org/debian/ jessie/main libarchive-extract-perl all 0.72-1 [24.8 kB] Get:724 http://mirror.bm.debian.org/debian/ jessie/main libclass-method-modifiers-perl all 2.11-1 [18.5 kB] Get:725 http://mirror.bm.debian.org/debian/ jessie/main libsub-exporter-progressive-perl all 0.001011-1 [7748 B] Get:726 http://mirror.bm.debian.org/debian/ jessie/main libdevel-globaldestruction-perl all 0.13-1 [8676 B] Get:727 http://mirror.bm.debian.org/debian/ jessie/main libimport-into-perl all 1.002004-1 [11.5 kB] Get:728 http://mirror.bm.debian.org/debian/ jessie/main librole-tiny-perl all 1.003004-1 [19.4 kB] Get:729 http://mirror.bm.debian.org/debian/ jessie/main libstrictures-perl all 1.005005-1 [13.5 kB] Get:730 http://mirror.bm.debian.org/debian/ jessie/main libmoo-perl all 1.006001-1 [62.7 kB] Get:731 http://mirror.bm.debian.org/debian/ jessie/main libexporter-tiny-perl all 0.038-2 [28.7 kB] Get:732 http://mirror.bm.debian.org/debian/ jessie/main libtype-tiny-perl all 1.000004-1 [269 kB] Get:733 http://mirror.bm.debian.org/debian/ jessie/main libarray-compare-perl all 2.11-1 [14.2 kB] Get:734 http://mirror.bm.debian.org/debian/ jessie/main libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:735 http://mirror.bm.debian.org/debian/ jessie/main libb-hooks-op-check-perl amd64 0.19-2+b1 [11.3 kB] Get:736 http://mirror.bm.debian.org/debian/ jessie/main libbambamc0 amd64 0.0.50-1 [35.4 kB] Get:737 http://mirror.bm.debian.org/debian/ jessie/main liblexical-sealrequirehints-perl amd64 0.007-1+b2 [14.4 kB] Get:738 http://mirror.bm.debian.org/debian/ jessie/main libbareword-filehandles-perl amd64 0.003-1+b2 [8922 B] Get:739 http://mirror.bm.debian.org/debian/ jessie/main libbcprov-java all 1.49+dfsg-3+deb8u2 [2002 kB] Get:740 http://mirror.bm.debian.org/debian/ jessie/main libbio-asn1-entrezgene-perl all 1.700-1 [40.9 kB] Get:741 http://mirror.bm.debian.org/debian/ jessie/main libcarp-clan-perl all 6.04-1 [15.8 kB] Get:742 http://mirror.bm.debian.org/debian/ jessie/main libbit-vector-perl amd64 7.3-1+b2 [146 kB] Get:743 http://mirror.bm.debian.org/debian/ jessie/main libbsd-resource-perl amd64 1.2907-1+b2 [33.1 kB] Get:744 http://mirror.bm.debian.org/debian/ jessie/main libcanberra-gtk3-module amd64 0.30-2.1 [16.8 kB] Get:745 http://mirror.bm.debian.org/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213 kB] Get:746 http://mirror.bm.debian.org/debian/ jessie/main libfcgi-perl amd64 0.77-1+deb8u1 [39.0 kB] Get:747 http://mirror.bm.debian.org/debian/ jessie/main libcgi-fast-perl all 1:2.04-1 [10.9 kB] Get:748 http://mirror.bm.debian.org/debian/ jessie/main libclass-c3-perl all 0.26-1 [22.9 kB] Get:749 http://mirror.bm.debian.org/debian/ jessie/main libclass-c3-xs-perl amd64 0.13-2+b1 [15.2 kB] Get:750 http://mirror.bm.debian.org/debian/ jessie/main libclass-inspector-perl all 1.28-1 [20.8 kB] Get:751 http://mirror.bm.debian.org/debian/ jessie/main libclass-xsaccessor-perl amd64 1.19-2+b4 [39.0 kB] Get:752 http://mirror.bm.debian.org/debian/ jessie/main libcofoja-java all 1.1-r150-2 [608 kB] Get:753 http://mirror.bm.debian.org/debian/ jessie/main libcommons-jexl2-java all 2.1.1-2 [245 kB] Get:754 http://mirror.bm.debian.org/debian/ jessie/main libconvert-binary-c-perl amd64 0.76-3+b2 [274 kB] Get:755 http://mirror.bm.debian.org/debian/ jessie/main libconvert-binhex-perl all 1.123-2 [30.2 kB] Get:756 http://mirror.bm.debian.org/debian/ jessie/main libcpan-meta-perl all 2.142690-1 [125 kB] Get:757 http://mirror.bm.debian.org/debian/ jessie/main libcr0 amd64 0.8.5-2.2 [32.7 kB] Get:758 http://mirror.bm.debian.org/debian/ jessie/main libcrypt-rc4-perl all 2.02-2 [8150 B] Get:759 http://mirror.bm.debian.org/debian/ jessie/main libcrypt-ssleay-perl amd64 0.58-1+b2 [45.8 kB] Get:760 http://mirror.bm.debian.org/debian/ jessie/main libparams-util-perl amd64 1.07-2+b1 [23.5 kB] Get:761 http://mirror.bm.debian.org/debian/ jessie/main libsub-install-perl all 0.928-1 [11.4 kB] Get:762 http://mirror.bm.debian.org/debian/ jessie/main libdata-optlist-perl all 0.109-1 [10.6 kB] Get:763 http://mirror.bm.debian.org/debian/ jessie/main libmro-compat-perl all 0.12-1 [13.2 kB] Get:764 http://mirror.bm.debian.org/debian/ jessie/main libsub-exporter-perl all 0.986-1 [49.9 kB] Get:765 http://mirror.bm.debian.org/debian/ jessie/main libdata-section-perl all 0.200006-1 [13.4 kB] Get:766 http://mirror.bm.debian.org/debian/ jessie/main libdate-calc-perl all 6.3-2 [194 kB] Get:767 http://mirror.bm.debian.org/debian/ jessie/main libdate-calc-xs-perl amd64 6.3-2 [54.0 kB] Get:768 http://mirror.bm.debian.org/debian/ jessie/main libdate-manip-perl all 6.47-1 [923 kB] Get:769 http://mirror.bm.debian.org/debian/ jessie/main libdbd-pg-perl amd64 3.4.2-1 [203 kB] Get:770 http://mirror.bm.debian.org/debian/ jessie/main libdbd-sqlite3-perl amd64 1.44-1 [156 kB] Get:771 http://mirror.bm.debian.org/debian/ jessie/main libpadwalker-perl amd64 1.98-1+b1 [20.7 kB] Get:772 http://mirror.bm.debian.org/debian/ jessie/main libdevel-caller-perl amd64 2.06-1+b2 [12.7 kB] Get:773 http://mirror.bm.debian.org/debian/ jessie/main libdevel-lexalias-perl amd64 0.05-1+b2 [9686 B] Get:774 http://mirror.bm.debian.org/debian/ jessie/main libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:775 http://mirror.bm.debian.org/debian/ jessie/main libfile-copy-recursive-perl all 0.38-1 [20.6 kB] Get:776 http://mirror.bm.debian.org/debian/ jessie/main libfile-desktopentry-perl all 0.07-1 [18.5 kB] Get:777 http://mirror.bm.debian.org/debian/ jessie/main libfile-which-perl all 1.09-1 [13.1 kB] Get:778 http://mirror.bm.debian.org/debian/ jessie/main libfile-homedir-perl all 1.00-1 [48.9 kB] Get:779 http://mirror.bm.debian.org/debian/ jessie/main libfile-mimeinfo-perl all 0.26-1 [50.1 kB] Get:780 http://mirror.bm.debian.org/debian/ jessie/main libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:781 http://mirror.bm.debian.org/debian/ jessie/main libfont-afm-perl all 1.20-1 [14.4 kB] Get:782 http://mirror.bm.debian.org/debian/ jessie/main libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:783 http://mirror.bm.debian.org/debian/ jessie/main libg20 amd64 0.72-5+b1 [42.6 kB] Get:784 http://mirror.bm.debian.org/debian/ jessie/main libglib2.0-data all 2.42.1-1 [2173 kB] Get:785 http://mirror.bm.debian.org/debian/ jessie/main libgphoto2-l10n all 2.5.4-1.1 [440 kB] Get:786 http://mirror.bm.debian.org/debian/ jessie/main libheap-perl all 0.80-2 [43.0 kB] Get:787 http://mirror.bm.debian.org/debian/ jessie/main libgraph-perl all 1:0.96-1.1 [126 kB] Get:788 http://mirror.bm.debian.org/debian/ jessie/main libio-pty-perl amd64 1:1.08-1+b4 [35.8 kB] Get:789 http://mirror.bm.debian.org/debian/ jessie/main libipc-run-perl all 0.92-1+deb8u1 [101 kB] Get:790 http://mirror.bm.debian.org/debian/ jessie/main libxml-parser-perl amd64 2.41-3 [215 kB] Get:791 http://mirror.bm.debian.org/debian/ jessie/main libxml-twig-perl all 1:3.48-1 [178 kB] Get:792 http://mirror.bm.debian.org/debian/ jessie/main libxml-xpath-perl all 1.13-7 [79.6 kB] Get:793 http://mirror.bm.debian.org/debian/ jessie/main libparse-recdescent-perl all 1.967009+dfsg-1 [172 kB] Get:794 http://mirror.bm.debian.org/debian/ jessie/main libgraphviz-perl all 2.16-1 [111 kB] Get:795 http://mirror.bm.debian.org/debian/ jessie/main libgtk2.0-bin amd64 2.24.25-3+deb8u2 [535 kB] Get:796 http://mirror.bm.debian.org/debian/ jessie/main libhtml-form-perl all 6.03-1 [23.9 kB] Get:797 http://mirror.bm.debian.org/debian/ jessie/main libhtml-format-perl all 2.11-1 [43.1 kB] Get:798 http://mirror.bm.debian.org/debian/ jessie/main libhtml-tableextract-perl all 2.11-1 [32.0 kB] Get:799 http://mirror.bm.debian.org/debian/ jessie/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:800 http://mirror.bm.debian.org/debian/ jessie/main libindirect-perl amd64 0.33-1 [26.4 kB] Get:801 http://mirror.bm.debian.org/debian/ jessie/main libio-sessiondata-perl all 1.03-1 [5782 B] Get:802 http://mirror.bm.debian.org/debian/ jessie/main libio-stringy-perl all 2.110-5 [98.3 kB] Get:803 http://mirror.bm.debian.org/debian/ jessie/main libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:804 http://mirror.bm.debian.org/debian/ jessie/main libjs-underscore all 1.7.0~dfsg-1 [49.9 kB] Get:805 http://mirror.bm.debian.org/debian/ jessie/main liblensfun-data all 0.2.8-2 [82.3 kB] Get:806 http://mirror.bm.debian.org/debian/ jessie/main liblensfun0 amd64 0.2.8-2 [46.6 kB] Get:807 http://mirror.bm.debian.org/debian/ jessie/main liblog-message-perl all 0.8-1 [26.0 kB] Get:808 http://mirror.bm.debian.org/debian/ jessie/main liblog-message-simple-perl all 0.10-2 [8126 B] Get:809 http://mirror.bm.debian.org/debian/ jessie/main libmagickcore-6.q16-2-extra amd64 8:6.8.9.9-5+deb8u12 [175 kB] Get:810 http://mirror.bm.debian.org/debian/ jessie/main libnet-smtp-ssl-perl all 1.01-3 [5996 B] Get:811 http://mirror.bm.debian.org/debian/ jessie/main libmailtools-perl all 2.13-1 [96.6 kB] Get:812 http://mirror.bm.debian.org/debian/ jessie/main libmath-derivative-perl all 0.01-6 [6214 B] Get:813 http://mirror.bm.debian.org/debian/ jessie/main libmath-spline-perl all 0.02-1 [7992 B] Get:814 http://mirror.bm.debian.org/debian/ jessie/main libmime-tools-perl all 5.505-1 [226 kB] Get:815 http://mirror.bm.debian.org/debian/ jessie/main libmldbm-perl all 2.05-1 [18.3 kB] Get:816 http://mirror.bm.debian.org/debian/ jessie/main libmodule-build-perl all 0.421000-2+deb8u1 [265 kB] Get:817 http://mirror.bm.debian.org/debian/ jessie/main libmodule-pluggable-perl all 5.1-1 [25.0 kB] Get:818 http://mirror.bm.debian.org/debian/ jessie/main libmodule-signature-perl all 0.73-1+deb8u2 [30.4 kB] Get:819 http://mirror.bm.debian.org/debian/ jessie/main libmultidimensional-perl amd64 0.010-1+b2 [8506 B] Get:820 http://mirror.bm.debian.org/debian/ jessie/main libnet-dbus-perl amd64 1.0.0-2+b2 [193 kB] Get:821 http://mirror.bm.debian.org/debian/ jessie/main netpbm amd64 2:10.0-15.2 [994 kB] Get:822 http://mirror.bm.debian.org/debian/ jessie/main libnetpbm10 amd64 2:10.0-15.2 [84.4 kB] Get:823 http://mirror.bm.debian.org/debian/ jessie/main libole-storage-lite-perl all 0.19-1 [26.1 kB] Get:824 http://mirror.bm.debian.org/debian/ jessie/main libossp-uuid-perl amd64 1.6.2-1.5+b1 [30.2 kB] Get:825 http://mirror.bm.debian.org/debian/ jessie/main libpackage-constants-perl all 0.04-1 [5820 B] Get:826 http://mirror.bm.debian.org/debian/ jessie/main libpam-cap amd64 1:2.24-8 [12.5 kB] Get:827 http://mirror.bm.debian.org/debian/ jessie/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:828 http://mirror.bm.debian.org/debian/ jessie/main libperl4-corelibs-perl all 0.003-1 [43.6 kB] Get:829 http://mirror.bm.debian.org/debian/ jessie/main libpod-coverage-perl all 0.23-1 [23.9 kB] Get:830 http://mirror.bm.debian.org/debian/ jessie/main libpod-latex-perl all 0.61-1 [34.7 kB] Get:831 http://mirror.bm.debian.org/debian/ jessie/main libpod-readme-perl all 0.11-1 [15.3 kB] Get:832 http://mirror.bm.debian.org/debian/ jessie/main libpostscript-perl all 0.06-2 [31.4 kB] Get:833 http://mirror.bm.debian.org/debian/ jessie/main libpython-dev amd64 2.7.9-1 [19.6 kB] Get:834 http://mirror.bm.debian.org/debian/ jessie/main libpython-all-dev amd64 2.7.9-1 [1008 B] Get:835 http://mirror.bm.debian.org/debian/ jessie/main libsane-extras-common amd64 1.0.22.3 [12.8 kB] Get:836 http://mirror.bm.debian.org/debian/ jessie/main libsane-extras amd64 1.0.22.3 [67.4 kB] Get:837 http://mirror.bm.debian.org/debian/ jessie/main libsasl2-modules amd64 2.1.26.dfsg1-13+deb8u1 [101 kB] Get:838 http://mirror.bm.debian.org/debian/ jessie/main libtask-weaken-perl all 1.04-1 [7990 B] Get:839 http://mirror.bm.debian.org/debian/ jessie/main libsoap-lite-perl all 1.11-1 [272 kB] Get:840 http://mirror.bm.debian.org/debian/ jessie/main libtext-template-perl all 1.46-1 [53.1 kB] Get:841 http://mirror.bm.debian.org/debian/ jessie/main libsoftware-license-perl all 0.103010-3 [119 kB] Get:842 http://mirror.bm.debian.org/debian/ jessie/main libsort-naturally-perl all 1.03-1 [13.9 kB] Get:843 http://mirror.bm.debian.org/debian/ jessie/main libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:844 http://mirror.bm.debian.org/debian/ jessie/main libunicode-map-perl amd64 0.112-11+b1 [146 kB] Get:845 http://mirror.bm.debian.org/debian/ jessie/main libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:846 http://mirror.bm.debian.org/debian/ jessie/main libstatistics-descriptive-perl all 3.0607-1 [41.4 kB] Get:847 http://mirror.bm.debian.org/debian/ jessie/main libsub-name-perl amd64 0.12-1 [12.1 kB] Get:848 http://mirror.bm.debian.org/debian/ jessie/main libsvg-perl all 2.59-1 [75.2 kB] Get:849 http://mirror.bm.debian.org/debian/ jessie/main libtree-dagnode-perl all 1.22-1 [59.5 kB] Get:850 http://mirror.bm.debian.org/debian/ jessie/main libsvg-graph-perl all 0.02-2 [130 kB] Get:851 http://mirror.bm.debian.org/debian/ jessie/main libtcmalloc-minimal4 amd64 2.2.1-0.2 [128 kB] Get:852 http://mirror.bm.debian.org/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1 kB] Get:853 http://mirror.bm.debian.org/debian/ jessie/main libtest-pod-perl all 1.48-1 [14.0 kB] Get:854 http://mirror.bm.debian.org/debian/ jessie/main libtext-soundex-perl amd64 3.4-1+b2 [13.7 kB] Get:855 http://mirror.bm.debian.org/debian/ jessie/main libtie-ixhash-perl all 1.23-1 [12.2 kB] Get:856 http://mirror.bm.debian.org/debian/ jessie/main libtype-tiny-xs-perl amd64 0.010-1 [27.1 kB] Get:857 http://mirror.bm.debian.org/debian/ jessie/main libutempter0 amd64 1.1.5-4 [8020 B] Get:858 http://mirror.bm.debian.org/debian/ jessie/main libx11-protocol-perl all 0.56-6 [150 kB] Get:859 http://mirror.bm.debian.org/debian/ jessie/main libxerces-c3.1 amd64 3.1.1-5.1+deb8u4 [864 kB] Get:860 http://mirror.bm.debian.org/debian/ jessie/main libxml-perl all 0.08-2 [113 kB] Get:861 http://mirror.bm.debian.org/debian/ jessie/main libxml-regexp-perl all 0.04-1 [8370 B] Get:862 http://mirror.bm.debian.org/debian/ jessie/main libxml-dom-perl all 1.44-1 [184 kB] Get:863 http://mirror.bm.debian.org/debian/ jessie/main libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:864 http://mirror.bm.debian.org/debian/ jessie/main libxml-dom-xpath-perl all 0.14-1 [9622 B] Get:865 http://mirror.bm.debian.org/debian/ jessie/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:866 http://mirror.bm.debian.org/debian/ jessie/main libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:867 http://mirror.bm.debian.org/debian/ jessie/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:868 http://mirror.bm.debian.org/debian/ jessie/main libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:869 http://mirror.bm.debian.org/debian/ jessie/main libxml-libxml-perl amd64 2.0116+dfsg-1+deb8u2 [365 kB] Get:870 http://mirror.bm.debian.org/debian/ jessie/main libxml-libxslt-perl amd64 1.92-1+b1 [47.7 kB] Get:871 http://mirror.bm.debian.org/debian/ jessie/main libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:872 http://mirror.bm.debian.org/debian/ jessie/main libxml-sax-writer-perl all 0.54-1 [23.4 kB] Get:873 http://mirror.bm.debian.org/debian/ jessie/main libxml-simple-perl all 2.20-1 [74.7 kB] Get:874 http://mirror.bm.debian.org/debian/ jessie/main libxml-writer-perl all 0.625-1 [29.7 kB] Get:875 http://mirror.bm.debian.org/debian/ jessie/main libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:876 http://mirror.bm.debian.org/debian/ jessie/main libyaml-libyaml-perl amd64 0.41-6 [67.0 kB] Get:877 http://mirror.bm.debian.org/debian/ jessie/main libyaml-perl all 1.13-1 [69.7 kB] Get:878 http://mirror.bm.debian.org/debian/ jessie/main libyaml-tiny-perl all 1.64-1 [31.8 kB] Get:879 http://mirror.bm.debian.org/debian/ jessie/main lksctp-tools amd64 1.0.16+dfsg-2 [62.6 kB] Get:880 http://mirror.bm.debian.org/debian/ jessie/main lmodern all 2.004.4-5 [9469 kB] Get:881 http://mirror.bm.debian.org/debian/ jessie/main loki amd64 2.4.7.4-5 [342 kB] Get:882 http://mirror.bm.debian.org/debian/ jessie/main macs amd64 2.0.9.1-1 [484 kB] Get:883 http://mirror.bm.debian.org/debian/ jessie/main mafft amd64 7.205-1 [775 kB] Get:884 http://mirror.bm.debian.org/debian/ jessie/main manpages-dev all 3.74-1 [1865 kB] Get:885 http://mirror.bm.debian.org/debian/ jessie/main mapsembler2 amd64 2.1.6+dfsg-1 [279 kB] Get:886 http://mirror.bm.debian.org/debian/ jessie/main maq amd64 0.7.1-5 [321 kB] Get:887 http://mirror.bm.debian.org/debian/ jessie/main melting amd64 4.3.1+dfsg-1 [663 kB] Get:888 http://mirror.bm.debian.org/debian/ jessie/main minia amd64 1.6088-1 [67.9 kB] Get:889 http://mirror.bm.debian.org/debian/ jessie/main mipe all 1.1-4 [67.5 kB] Get:890 http://mirror.bm.debian.org/debian/ jessie/main mira-assembler amd64 4.0.2-1+b1 [1403 kB] Get:891 http://mirror.bm.debian.org/debian/ jessie/main mothur amd64 1.33.3+dfsg-2 [3740 kB] Get:892 http://mirror.bm.debian.org/debian/ jessie/main muscle amd64 1:3.8.31-1 [169 kB] Get:893 http://mirror.bm.debian.org/debian/ jessie/main mustang amd64 3.2.2-1 [112 kB] Get:894 http://mirror.bm.debian.org/debian/ jessie/main ncbi-blast+ amd64 2.2.29-3 [7965 kB] Get:895 http://mirror.bm.debian.org/debian/ jessie/main ncbi-epcr amd64 2.3.12-1-2 [122 kB] Get:896 http://mirror.bm.debian.org/debian/ jessie/main ncbi-tools-bin amd64 6.1.20120620-8 [501 kB] Get:897 http://mirror.bm.debian.org/debian/ jessie/main ncoils amd64 2002-4 [21.0 kB] Get:898 http://mirror.bm.debian.org/debian/ jessie/main notification-daemon amd64 0.7.6-2 [51.4 kB] Get:899 http://mirror.bm.debian.org/debian/ jessie/main parsinsert amd64 1.04-1 [63.5 kB] Get:900 http://mirror.bm.debian.org/debian/ jessie/main perl-doc all 5.20.2-3+deb8u11 [7347 kB] Get:901 http://mirror.bm.debian.org/debian/ jessie/main perl-tk amd64 1:804.032-3+b3 [2031 kB] Get:902 http://mirror.bm.debian.org/debian/ jessie/main perm amd64 0.4.0-1 [114 kB] Get:903 http://mirror.bm.debian.org/debian/ jessie/main phyml amd64 2:20120412-2 [939 kB] Get:904 http://mirror.bm.debian.org/debian/ jessie/main phyutility amd64 2.7.3-1 [897 kB] Get:905 http://mirror.bm.debian.org/debian/ jessie/main picard-tools all 1.113-1 [650 kB] Get:906 http://mirror.bm.debian.org/debian/ jessie/main pkg-config amd64 0.28-1 [57.5 kB] Get:907 http://mirror.bm.debian.org/debian/ jessie/main plink amd64 1.07-3 [1286 kB] Get:908 http://mirror.bm.debian.org/debian/ jessie/main poa amd64 2.0+20060928-3 [50.8 kB] Get:909 http://mirror.bm.debian.org/debian/ jessie/main prank amd64 0.0.140110-1 [327 kB] Get:910 http://mirror.bm.debian.org/debian/ jessie/main xdg-utils all 1.1.0~rc1+git20111210-7.4+deb8u1 [65.1 kB] Get:911 http://mirror.bm.debian.org/debian/ jessie/main texlive-base all 2014.20141024-2+deb8u1 [17.7 MB] Get:912 http://mirror.bm.debian.org/debian/ jessie/main texlive-latex-base all 2014.20141024-2+deb8u1 [858 kB] Get:913 http://mirror.bm.debian.org/debian/ jessie/main texlive-latex-recommended all 2014.20141024-2+deb8u1 [7630 kB] Get:914 http://mirror.bm.debian.org/debian/ jessie/main texlive-pictures all 2014.20141024-2+deb8u1 [3039 kB] Get:915 http://mirror.bm.debian.org/debian/ jessie/main texlive-generic-recommended all 2014.20141024-2+deb8u1 [2143 kB] Get:916 http://mirror.bm.debian.org/debian/ jessie/main prerex amd64 6.5.3-1 [598 kB] Get:917 http://mirror.bm.debian.org/debian/ jessie/main preview-latex-style all 11.87-3+deb8u1 [318 kB] Get:918 http://mirror.bm.debian.org/debian/ jessie/main primer3 amd64 2.3.6-1 [168 kB] Get:919 http://mirror.bm.debian.org/debian/ jessie/main probalign amd64 1.4-3 [67.9 kB] Get:920 http://mirror.bm.debian.org/debian/ jessie/main probcons amd64 1.12-9 [196 kB] Get:921 http://mirror.bm.debian.org/debian/ jessie/main proda amd64 1.0-8 [58.3 kB] Get:922 http://mirror.bm.debian.org/debian/ jessie/main texlive-pstricks all 2014.20141024-1 [26.2 MB] Get:923 http://mirror.bm.debian.org/debian/ jessie/main prosper all 1.00.4+cvs.2007.05.01-4 [461 kB] Get:924 http://mirror.bm.debian.org/debian/ jessie/main ps2eps amd64 1.68+binaryfree-1 [37.7 kB] Get:925 http://mirror.bm.debian.org/debian/ jessie/main psmisc amd64 22.21-2 [119 kB] Get:926 http://mirror.bm.debian.org/debian/ jessie/main python-all amd64 2.7.9-1 [996 B] Get:927 http://mirror.bm.debian.org/debian/ jessie/main python2.7-dev amd64 2.7.9-2+deb8u1 [290 kB] Get:928 http://mirror.bm.debian.org/debian/ jessie/main python-dev amd64 2.7.9-1 [1182 B] Get:929 http://mirror.bm.debian.org/debian/ jessie/main python-all-dev amd64 2.7.9-1 [1024 B] Get:930 http://mirror.bm.debian.org/debian/ jessie/main python-biopython-doc all 1.64+dfsg-5 [9763 kB] Get:931 http://mirror.bm.debian.org/debian/ jessie/main python-cairo amd64 1.8.8-1+b2 [84.2 kB] Get:932 http://mirror.bm.debian.org/debian/ jessie/main python-gobject-2 amd64 2.28.6-12+b1 [348 kB] Get:933 http://mirror.bm.debian.org/debian/ jessie/main python-gtk2 amd64 2.24.0-4 [637 kB] Get:934 http://mirror.bm.debian.org/debian/ jessie/main python-glade2 amd64 2.24.0-4 [43.3 kB] Get:935 http://mirror.bm.debian.org/debian/ jessie/main python-gmpy amd64 1.15-1 [171 kB] Get:936 http://mirror.bm.debian.org/debian/ jessie/main python-pil amd64 2.6.1-2+deb8u3 [304 kB] Get:937 http://mirror.bm.debian.org/debian/ jessie/main python-imaging all 2.6.1-2+deb8u3 [9846 B] Get:938 http://mirror.bm.debian.org/debian/ jessie/main python-mpmath all 0.19-1 [402 kB] Get:939 http://mirror.bm.debian.org/debian/ jessie/main python-pyglet all 1.1.4.dfsg-2 [970 kB] Get:940 http://mirror.bm.debian.org/debian/ jessie/main python-renderpm amd64 3.1.8-3+deb8u1 [35.6 kB] Get:941 http://mirror.bm.debian.org/debian/ jessie/main python-sympy all 0.7.5-3 [2448 kB] Get:942 http://mirror.bm.debian.org/debian/ jessie/main python-tk amd64 2.7.8-2+b1 [26.7 kB] Get:943 http://mirror.bm.debian.org/debian/ jessie/main python-wxversion all 3.0.1.1+dfsg-2 [113 kB] Get:944 http://mirror.bm.debian.org/debian/ jessie/main python-wxgtk3.0 amd64 3.0.1.1+dfsg-2 [5195 kB] Get:945 http://mirror.bm.debian.org/debian/ jessie/main raster3d amd64 3.0-3-1 [162 kB] Get:946 http://mirror.bm.debian.org/debian/ jessie/main rename all 0.20-3 [12.4 kB] Get:947 http://mirror.bm.debian.org/debian/ jessie/main rnahybrid amd64 2.1.1-2 [285 kB] Get:948 http://mirror.bm.debian.org/debian/ jessie/main rtax all 0.984-2 [25.8 kB] Get:949 http://mirror.bm.debian.org/debian/ jessie/main rubygems-integration all 1.8 [4514 B] Get:950 http://mirror.bm.debian.org/debian/ jessie/main libruby2.1 amd64 2.1.5-2+deb8u3 [3290 kB] Get:951 http://mirror.bm.debian.org/debian/ jessie/main ruby2.1 amd64 2.1.5-2+deb8u3 [276 kB] Get:952 http://mirror.bm.debian.org/debian/ jessie/main ruby all 1:2.1.5+deb8u2 [9688 B] Get:953 http://mirror.bm.debian.org/debian/ jessie/main samtools amd64 0.1.19-1 [563 kB] Get:954 http://mirror.bm.debian.org/debian/ jessie/main update-inetd all 4.43 [21.8 kB] Get:955 http://mirror.bm.debian.org/debian/ jessie/main sane-utils amd64 1.0.24-8+deb8u2 [223 kB] Get:956 http://mirror.bm.debian.org/debian/ jessie/main sim4 amd64 0.0.20121010-1 [49.8 kB] Get:957 http://mirror.bm.debian.org/debian/ jessie/main smalt amd64 0.7.6-4 [109 kB] Get:958 http://mirror.bm.debian.org/debian/ jessie/main ssake all 3.8.2-1 [41.9 kB] Get:959 http://mirror.bm.debian.org/debian/ jessie/main t-coffee amd64 11.00.8cbe486-1 [921 kB] Get:960 http://mirror.bm.debian.org/debian/ jessie/main tcl8.6 amd64 8.6.2+dfsg-2 [122 kB] Get:961 http://mirror.bm.debian.org/debian/ jessie/main tcl amd64 8.6.0+8 [5366 B] Get:962 http://mirror.bm.debian.org/debian/ jessie/main tcpd amd64 7.6.q-25 [22.9 kB] Get:963 http://mirror.bm.debian.org/debian/ jessie/main tex-gyre all 20140520-1 [5051 kB] Get:964 http://mirror.bm.debian.org/debian/ jessie/main texlive-extra-utils all 2014.20141024-1 [10.6 MB] Get:965 http://mirror.bm.debian.org/debian/ jessie/main texlive-font-utils all 2014.20141024-1 [1728 kB] Get:966 http://mirror.bm.debian.org/debian/ jessie/main ttf-adf-universalis all 0.20090423-2 [221 kB] Get:967 http://mirror.bm.debian.org/debian/ jessie/main ttf-adf-gillius all 0.20090423-2 [400 kB] Get:968 http://mirror.bm.debian.org/debian/ jessie/main fonts-stix all 1.1.1-1 [588 kB] Get:969 http://mirror.bm.debian.org/debian/ jessie/main ttf-adf-accanthis all 0.20090423-2 [401 kB] Get:970 http://mirror.bm.debian.org/debian/ jessie/main texlive-fonts-extra all 2014.20141024-1 [204 MB] Get:971 http://mirror.bm.debian.org/debian/ jessie/main texlive-fonts-extra-doc all 2014.20141024-1 [60.3 MB] Get:972 http://mirror.bm.debian.org/debian/ jessie/main texlive-fonts-recommended all 2014.20141024-2+deb8u1 [5654 kB] Get:973 http://mirror.bm.debian.org/debian/ jessie/main texlive-fonts-recommended-doc all 2014.20141024-2+deb8u1 [2758 kB] Get:974 http://mirror.bm.debian.org/debian/ jessie/main texlive-latex-base-doc all 2014.20141024-2+deb8u1 [38.3 MB] Get:975 http://mirror.bm.debian.org/debian/ jessie/main texlive-latex-extra all 2014.20141024-1 [7604 kB] Get:976 http://mirror.bm.debian.org/debian/ jessie/main texlive-latex-extra-doc all 2014.20141024-1 [327 MB] Get:977 http://mirror.bm.debian.org/debian/ jessie/main texlive-latex-recommended-doc all 2014.20141024-2+deb8u1 [37.4 MB] Get:978 http://mirror.bm.debian.org/debian/ jessie/main texlive-pictures-doc all 2014.20141024-2+deb8u1 [72.0 MB] Get:979 http://mirror.bm.debian.org/debian/ jessie/main texlive-pstricks-doc all 2014.20141024-1 [85.6 MB] Get:980 http://mirror.bm.debian.org/debian/ jessie/main tigr-glimmer amd64 3.02-3 [276 kB] Get:981 http://mirror.bm.debian.org/debian/ jessie/main tipa all 2:1.3-20 [2972 kB] Get:982 http://mirror.bm.debian.org/debian/ jessie/main tk8.6 amd64 8.6.2-1 [71.1 kB] Get:983 http://mirror.bm.debian.org/debian/ jessie/main tk amd64 8.6.0+8 [5388 B] Get:984 http://mirror.bm.debian.org/debian/ jessie/main tm-align amd64 20140601+dfsg-1 [49.7 kB] Get:985 http://mirror.bm.debian.org/debian/ jessie/main ufraw-batch amd64 0.20-2+deb8u1 [352 kB] Get:986 http://mirror.bm.debian.org/debian/ jessie/main velvet amd64 1.2.10+dfsg1-1 [683 kB] Get:987 http://mirror.bm.debian.org/debian/ jessie/main xbitmaps all 1.1.1-2 [32.1 kB] Get:988 http://mirror.bm.debian.org/debian/ jessie/main xterm amd64 312-2 [605 kB] Get:989 http://mirror.bm.debian.org/debian/ jessie/main vprerex amd64 6.5.3-1 [25.6 kB] Get:990 http://mirror.bm.debian.org/debian/ jessie/main wise-data all 2.4.1-17 [108 kB] Get:991 http://mirror.bm.debian.org/debian/ jessie/main wise amd64 2.4.1-17 [961 kB] Get:992 http://mirror.bm.debian.org/debian/ jessie/main x11-utils amd64 7.7+2 [191 kB] Get:993 http://mirror.bm.debian.org/debian/ jessie/main x11-xserver-utils amd64 7.7+3+b1 [158 kB] Get:994 http://mirror.bm.debian.org/debian/ jessie/main xdg-user-dirs amd64 0.15-2 [52.1 kB] Get:995 http://mirror.bm.debian.org/debian/ jessie/main acedb-other amd64 4.9.39+dfsg.01-5 [17.3 kB] Get:996 http://mirror.bm.debian.org/debian/ jessie/main libibverbs1 amd64 1.1.8-1.1 [32.2 kB] Get:997 http://mirror.bm.debian.org/debian/ jessie/main libopenmpi1.6 amd64 1.6.5-9.1+deb8u1 [1455 kB] Get:998 http://mirror.bm.debian.org/debian/ jessie/main ampliconnoise amd64 1.29-2 [467 kB] Get:999 http://mirror.bm.debian.org/debian/ jessie/main autodock-vina amd64 1.1.2-3+b1 [192 kB] Get:1000 http://mirror.bm.debian.org/debian/ jessie/main libeigen3-dev all 3.2.2-3 [513 kB] Get:1001 http://mirror.bm.debian.org/debian/ jessie/main cain-solvers amd64 1.9-8 [951 kB] Get:1002 http://mirror.bm.debian.org/debian/ jessie/main cain all 1.9-8 [10.8 MB] Get:1003 http://mirror.bm.debian.org/debian/ jessie/main cain-examples all 1.9-8 [173 kB] Get:1004 http://mirror.bm.debian.org/debian/ jessie/main concavity amd64 0.1-2 [315 kB] Get:1005 http://mirror.bm.debian.org/debian/ jessie/main datamash amd64 1.0.6-2 [691 kB] Get:1006 http://mirror.bm.debian.org/debian/ jessie/main disulfinder-data all 1.2.11-4 [1131 kB] Get:1007 http://mirror.bm.debian.org/debian/ jessie/main disulfinder amd64 1.2.11-4 [237 kB] Get:1008 http://mirror.bm.debian.org/debian/ jessie/main fasttree amd64 2.1.7-2 [128 kB] Get:1009 http://mirror.bm.debian.org/debian/ jessie/main freecontact amd64 1.0.21-3+b1 [315 kB] Get:1010 http://mirror.bm.debian.org/debian/ jessie/main genometools-common all 1.5.3-2 [139 kB] Get:1011 http://mirror.bm.debian.org/debian/ jessie/main genometools amd64 1.5.3-2 [1750 kB] Get:1012 http://mirror.bm.debian.org/debian/ jessie/main libhwloc-plugins amd64 1.10.0-3 [15.2 kB] Get:1013 http://mirror.bm.debian.org/debian/ jessie/main libset-scalar-perl all 1.29-1 [35.3 kB] Get:1014 http://mirror.bm.debian.org/debian/ jessie/main lynx-cur amd64 2.8.9dev1-2+deb8u1 [1623 kB] Get:1015 http://mirror.bm.debian.org/debian/ jessie/main lynx all 2.8.9dev1-2+deb8u1 [232 kB] Get:1016 http://mirror.bm.debian.org/debian/ jessie/main med-cloud all 2.0 [12.6 kB] Get:1017 http://mirror.bm.debian.org/debian/ jessie/main med-tasks all 2.0 [14.7 kB] Get:1018 http://mirror.bm.debian.org/debian/ jessie/main med-config all 2.0 [14.2 kB] Get:1019 http://mirror.bm.debian.org/debian/ jessie/main openmpi-common all 1.6.5-9.1+deb8u1 [110 kB] Get:1020 http://mirror.bm.debian.org/debian/ jessie/main openmpi-bin amd64 1.6.5-9.1+deb8u1 [154 kB] Get:1021 http://mirror.bm.debian.org/debian/ jessie/main python-cogent amd64 1.5.3-2 [1269 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1545 MB in 1min 47s (14.4 MB/s) (Reading database ... 16172 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.19-18+deb8u10_amd64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.19-18+deb8u10) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. (Reading database ... 16175 files and directories currently installed.) Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.19-18+deb8u10_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.19-18+deb8u10) ... Installing new version of config file /etc/bindresvport.blacklist ... Installing new version of config file /etc/gai.conf ... (Reading database ... 16165 files and directories currently installed.) Preparing to replace libgomp1:amd64 4.7.2-5 (using .../libgomp1_4.9.2-10+deb8u1_amd64.deb) ... Unpacking replacement libgomp1:amd64 ... dpkg: gcc-4.7-base:amd64: dependency problems, but removing anyway as you requested: libstdc++6:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgfortran3:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgcc1:amd64 depends on gcc-4.7-base (= 4.7.2-5). libquadmath0:amd64 depends on gcc-4.7-base (= 4.7.2-5). (Reading database ... 16165 files and directories currently installed.) Removing gcc-4.7-base:amd64 ... Selecting previously unselected package gcc-4.9-base:amd64. (Reading database ... 16156 files and directories currently installed.) Unpacking gcc-4.9-base:amd64 (from .../gcc-4.9-base_4.9.2-10+deb8u1_amd64.deb) ... Setting up gcc-4.9-base:amd64 (4.9.2-10+deb8u1) ... (Reading database ... 16165 files and directories currently installed.) Preparing to replace libstdc++6:amd64 4.7.2-5 (using .../libstdc++6_4.9.2-10+deb8u1_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.9.2-10+deb8u1) ... 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Changing shell of daemon from /bin/sh to /usr/sbin/nologin Changing shell of bin from /bin/sh to /usr/sbin/nologin Changing shell of sys from /bin/sh to /usr/sbin/nologin Changing shell of games from /bin/sh to /usr/sbin/nologin Changing shell of man from /bin/sh to /usr/sbin/nologin Changing shell of lp from /bin/sh to /usr/sbin/nologin Changing shell of mail from /bin/sh to /usr/sbin/nologin Changing shell of news from /bin/sh to /usr/sbin/nologin Changing shell of uucp from /bin/sh to /usr/sbin/nologin Changing shell of proxy from /bin/sh to /usr/sbin/nologin Changing shell of www-data from /bin/sh to /usr/sbin/nologin Changing shell of backup from /bin/sh to /usr/sbin/nologin Changing shell of list from /bin/sh to /usr/sbin/nologin Changing shell of irc from /bin/sh to /usr/sbin/nologin Changing shell of gnats from /bin/sh to /usr/sbin/nologin Changing shell of nobody from /bin/sh to /usr/sbin/nologin 16 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 16694 files and directories currently installed.) 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Adding 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin' Adding 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin' Unpacking libgtk-3-bin (3.14.5-1+deb8u1) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../adwaita-icon-theme_3.14.0-2_all.deb ... Unpacking adwaita-icon-theme (3.14.0-2) ... Selecting previously unselected package libgtk-3-common. Preparing to unpack .../libgtk-3-common_3.14.5-1+deb8u1_all.deb ... Unpacking libgtk-3-common (3.14.5-1+deb8u1) ... Preparing to unpack .../liblcms2-2_2.6-3+deb8u1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.6-3+deb8u1) over (2.2+git20110628-2.2+deb7u1) ... Selecting previously unselected package libcolord2:amd64. Preparing to unpack .../libcolord2_1.2.1-1+b2_amd64.deb ... Unpacking libcolord2:amd64 (1.2.1-1+b2) ... Selecting previously unselected package libjson-glib-1.0-common. 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Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.421000-2+deb8u1) ... Selecting previously unselected package libmodule-pluggable-perl. Preparing to unpack .../libmodule-pluggable-perl_5.1-1_all.deb ... Unpacking libmodule-pluggable-perl (5.1-1) ... Selecting previously unselected package libmodule-signature-perl. Preparing to unpack .../libmodule-signature-perl_0.73-1+deb8u2_all.deb ... Unpacking libmodule-signature-perl (0.73-1+deb8u2) ... Selecting previously unselected package libmultidimensional-perl. Preparing to unpack .../libmultidimensional-perl_0.010-1+b2_amd64.deb ... Unpacking libmultidimensional-perl (0.010-1+b2) ... Selecting previously unselected package libnet-dbus-perl. Preparing to unpack .../libnet-dbus-perl_1.0.0-2+b2_amd64.deb ... Unpacking libnet-dbus-perl (1.0.0-2+b2) ... Preparing to unpack .../netpbm_2%3a10.0-15.2_amd64.deb ... Unpacking netpbm (2:10.0-15.2) over (2:10.0-15+b1) ... Preparing to unpack .../libnetpbm10_2%3a10.0-15.2_amd64.deb ... Unpacking libnetpbm10 (2:10.0-15.2) over (2:10.0-15+b1) ... Selecting previously unselected package libole-storage-lite-perl. Preparing to unpack .../libole-storage-lite-perl_0.19-1_all.deb ... Unpacking libole-storage-lite-perl (0.19-1) ... Selecting previously unselected package libossp-uuid-perl. Preparing to unpack .../libossp-uuid-perl_1.6.2-1.5+b1_amd64.deb ... Unpacking libossp-uuid-perl (1.6.2-1.5+b1) ... Selecting previously unselected package libpackage-constants-perl. Preparing to unpack .../libpackage-constants-perl_0.04-1_all.deb ... Unpacking libpackage-constants-perl (0.04-1) ... Selecting previously unselected package libpam-cap:amd64. Preparing to unpack .../libpam-cap_1%3a2.24-8_amd64.deb ... Unpacking libpam-cap:amd64 (1:2.24-8) ... Preparing to unpack .../libpaper-utils_1.1.24+nmu4_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu4) over (1.1.24+nmu2) ... Selecting previously unselected package libperl4-corelibs-perl. Preparing to unpack .../libperl4-corelibs-perl_0.003-1_all.deb ... Unpacking libperl4-corelibs-perl (0.003-1) ... Selecting previously unselected package libpod-coverage-perl. Preparing to unpack .../libpod-coverage-perl_0.23-1_all.deb ... Unpacking libpod-coverage-perl (0.23-1) ... Selecting previously unselected package libpod-latex-perl. Preparing to unpack .../libpod-latex-perl_0.61-1_all.deb ... Adding 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Adding 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Unpacking libpod-latex-perl (0.61-1) ... Selecting previously unselected package libpod-readme-perl. Preparing to unpack .../libpod-readme-perl_0.11-1_all.deb ... Unpacking libpod-readme-perl (0.11-1) ... Selecting previously unselected package libpostscript-perl. Preparing to unpack .../libpostscript-perl_0.06-2_all.deb ... Unpacking libpostscript-perl (0.06-2) ... Selecting previously unselected package libpython-dev:amd64. Preparing to unpack .../libpython-dev_2.7.9-1_amd64.deb ... Unpacking libpython-dev:amd64 (2.7.9-1) ... Selecting previously unselected package libpython-all-dev:amd64. Preparing to unpack .../libpython-all-dev_2.7.9-1_amd64.deb ... Unpacking libpython-all-dev:amd64 (2.7.9-1) ... Selecting previously unselected package libsane-extras-common. Preparing to unpack .../libsane-extras-common_1.0.22.3_amd64.deb ... Unpacking libsane-extras-common (1.0.22.3) ... Selecting previously unselected package libsane-extras:amd64. Preparing to unpack .../libsane-extras_1.0.22.3_amd64.deb ... Unpacking libsane-extras:amd64 (1.0.22.3) ... Selecting previously unselected package libsasl2-modules:amd64. Preparing to unpack .../libsasl2-modules_2.1.26.dfsg1-13+deb8u1_amd64.deb ... Unpacking libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Selecting previously unselected package libtask-weaken-perl. Preparing to unpack .../libtask-weaken-perl_1.04-1_all.deb ... Unpacking libtask-weaken-perl (1.04-1) ... Selecting previously unselected package libsoap-lite-perl. Preparing to unpack .../libsoap-lite-perl_1.11-1_all.deb ... Unpacking libsoap-lite-perl (1.11-1) ... Selecting previously unselected package libtext-template-perl. Preparing to unpack .../libtext-template-perl_1.46-1_all.deb ... Unpacking libtext-template-perl (1.46-1) ... Selecting previously unselected package libsoftware-license-perl. Preparing to unpack .../libsoftware-license-perl_0.103010-3_all.deb ... Unpacking libsoftware-license-perl (0.103010-3) ... Selecting previously unselected package libsort-naturally-perl. Preparing to unpack .../libsort-naturally-perl_1.03-1_all.deb ... 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Setting up libatk-wrapper-java (0.30.5-1) ... Setting up libatk-wrapper-java-jni:amd64 (0.30.5-1) ... Setting up libatomic1:amd64 (4.9.2-10+deb8u1) ... Setting up x11-common (1:7.7+7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libaudio2:amd64 (1.9.4-3) ... Setting up libboost-system1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-filesystem1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-program-options1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libicu52:amd64 (52.1-8+deb8u7) ... Setting up libboost-regex1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-serialization1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-thread1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libcairo-gobject2:amd64 (1.14.0-2.1+deb8u2) ... Setting up libltdl7:amd64 (2.4.2-1.11+b1) ... Setting up libogg0:amd64 (1.3.2-1) ... Setting up libtdb1:amd64 (1.3.6-0+deb8u1) ... Setting up libvorbis0a:amd64 (1.3.4-2+deb8u1) ... Setting up libvorbisfile3:amd64 (1.3.4-2+deb8u1) ... Setting up libcanberra0:amd64 (0.30-2.1) ... Setting up libdconf1:amd64 (0.22.0-1) ... Setting up dconf-service (0.22.0-1) ... Setting up dconf-gsettings-backend:amd64 (0.22.0-1) ... Setting up hicolor-icon-theme (0.13-1) ... Setting up libwayland-client0:amd64 (1.6.0-2) ... Setting up libwayland-cursor0:amd64 (1.6.0-2) ... Setting up xkb-data (2.12-1) ... Setting up libxkbcommon0:amd64 (0.4.3-2) ... Setting up liblcms2-2:amd64 (2.6-3+deb8u1) ... Setting up libcolord2:amd64 (1.2.1-1+b2) ... Setting up libjson-glib-1.0-common (1.0.2-1) ... Setting up libjson-glib-1.0-0:amd64 (1.0.2-1) ... Setting up libproxy1:amd64 (0.4.11-4+b2) ... Setting up glib-networking-common (2.42.0-2) ... Setting up glib-networking-services (2.42.0-2) ... Setting up gsettings-desktop-schemas (3.14.1-1) ... Setting up glib-networking:amd64 (2.42.0-2) ... Setting up libsoup2.4-1:amd64 (2.48.0-1+deb8u1) ... Setting up libsoup-gnome2.4-1:amd64 (2.48.0-1+deb8u1) ... Setting up librest-0.7-0:amd64 (0.7.92-3) ... Setting up libcap-ng0:amd64 (0.7.4-2) ... Setting up libcilkrts5:amd64 (4.9.2-10+deb8u1) ... Setting up libisl10:amd64 (0.12.2-2) ... Setting up libcloog-isl4:amd64 (0.18.2-1+b2) ... Setting up libcolamd2.8.0:amd64 (1:4.2.1-3) ... Setting up libgudev-1.0-0:amd64 (215-17+deb8u7) ... Setting up libusb-1.0-0:amd64 (2:1.0.19-1) ... Setting up libgusb2:amd64 (0.1.6-5) ... Setting up libcolorhug2:amd64 (1.2.1-1+b2) ... Setting up libdjvulibre-text (3.5.25.4-4) ... Setting up libdjvulibre21:amd64 (3.5.25.4-4+b1) ... Setting up libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libdrm2:amd64 (2.4.58-2) ... Setting up libpciaccess0:amd64 (0.13.2-3+b1) ... Setting up libdrm-intel1:amd64 (2.4.58-2) ... Setting up libdrm-nouveau2:amd64 (2.4.58-2) ... Setting up libdrm-radeon1:amd64 (2.4.58-2) ... Setting up libelf1:amd64 (0.159-4.2) ... Setting up libelfg0:amd64 (0.8.13-5) ... Setting up libexif12:amd64 (0.6.21-2) ... Setting up libexiv2-13:amd64 (0.24-4.1) ... Setting up libfftw3-double3:amd64 (3.3.4-2) ... Setting up libflac8:amd64 (1.3.0-3) ... Setting up libfontenc1:amd64 (1:1.1.2-1+b2) ... Setting up libgflags2 (2.0-2.1) ... Setting up libgif4:amd64 (4.1.6-11+deb8u1) ... Setting up libllvm3.5:amd64 (1:3.5-10) ... Setting up libgl1-mesa-dri:amd64 (10.3.2-1+deb8u1) ... Setting up libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Setting up libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-dri2-0:amd64 (1.10-3+b1) ... Setting up libxcb-dri3-0:amd64 (1.10-3+b1) ... Setting up libxcb-glx0:amd64 (1.10-3+b1) ... Setting up libxcb-present0:amd64 (1.10-3+b1) ... Setting up libxcb-sync1:amd64 (1.10-3+b1) ... Setting up libxshmfence1:amd64 (1.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Setting up libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Setting up libglade2-0:amd64 (1:2.6.4-2) ... Setting up libglpk36:amd64 (4.55-1) ... Setting up libglu1-mesa:amd64 (9.0.0-2) ... Setting up libunwind8 (1.1-3.2) ... Setting up libgoogle-glog0 (0.3.3-2) ... Setting up libgphoto2-port10:amd64 (2.5.4-1.1+b2) ... Setting up libgphoto2-6:amd64 (2.5.4-1.1+b2) ... Setting up libharfbuzz-icu0:amd64 (0.9.35-2) ... Setting up libieee1284-3:amd64 (0.2.11-12) ... Setting up libijs-0.35:amd64 (0.35-10) ... Setting up libilmbase6:amd64 (1.0.1-6.1) ... Setting up libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Setting up libitm1:amd64 (4.9.2-10+deb8u1) ... Setting up liblqr-1-0:amd64 (0.4.2-2) ... Setting up liblsan0:amd64 (4.9.2-10+deb8u1) ... Setting up liblua5.1-0:amd64 (5.1.5-7.1) ... Setting up libmagickcore-6.q16-2:amd64 (8:6.8.9.9-5+deb8u12) ... Setting up libmagickwand-6.q16-2:amd64 (8:6.8.9.9-5+deb8u12) ... Setting up libmng1:amd64 (1.0.10+dfsg-3.1+b3) ... Setting up libmpfr4:amd64 (3.1.2-2) ... Setting up mysql-common (5.5.60-0+deb8u1) ... Setting up libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Setting up ncbi-data (6.1.20120620-8) ... Setting up libncbi6:amd64 (6.1.20120620-8) ... Setting up libnotify4:amd64 (0.7.6-2) ... Setting up libnspr4:amd64 (2:4.12-1+debu8u1) ... Setting up libnss3:amd64 (2:3.26-1+debu8u3) ... Setting up libnuma1:amd64 (2.0.10-1) ... Setting up libopenexr6:amd64 (1.6.1-8) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Setting up dbus (1.8.22-0+deb8u1) ... Installing new version of config file /etc/dbus-1/session.conf ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libcgmanager0:amd64 (0.33-2+deb8u2) ... Setting up libnih1 (1.0.3-4.3) ... Setting up libnih-dbus1 (1.0.3-4.3) ... Setting up init-system-helpers (1.22) ... Setting up cgmanager (0.33-2+deb8u2) ... invoke-rc.d: policy-rc.d denied execution of start. invoke-rc.d: policy-rc.d denied execution of start. Setting up systemd-shim (9-1) ... Setting up libpam-systemd:amd64 (215-17+deb8u7) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Setting up libpcsclite1:amd64 (1.8.13-1+deb8u1) ... Setting up libpolkit-gobject-1-0:amd64 (0.105-15~deb8u2) ... Setting up libpolkit-agent-1-0:amd64 (0.105-15~deb8u2) ... Setting up libpolkit-backend-1-0:amd64 (0.105-15~deb8u2) ... Setting up libopenjpeg5:amd64 (1:1.5.2-3) ... Setting up libpoppler46:amd64 (0.26.5-2+deb8u4) ... Setting up qtcore4-l10n (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqtcore4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-xml:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqtgui4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libpoppler-qt4-4:amd64 (0.26.5-2+deb8u4) ... Setting up libpq5:amd64 (9.4.18-0+deb8u1) ... Setting up libpth20:amd64 (2.0.7-20) ... Setting up libvorbisenc2:amd64 (1.3.4-2+deb8u1) ... Setting up libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... Setting up libxtst6:amd64 (2:1.2.2-1+deb8u1) ... Setting up libpulse0:amd64 (5.0-13) ... Setting up libpython2.7:amd64 (2.7.9-2+deb8u1) ... Setting up libc-dev-bin (2.19-18+deb8u10) ... Setting up linux-libc-dev:amd64 (3.16.56-1+deb8u1) ... Setting up libc6-dev:amd64 (2.19-18+deb8u10) ... Setting up libexpat1-dev:amd64 (2.1.0-6+deb8u4) ... Setting up libpython2.7-dev:amd64 (2.7.9-2+deb8u1) ... Setting up libsane-common (1.0.24-8+deb8u2) ... Setting up libv4lconvert0:amd64 (1.6.0-2) ... Setting up libv4l-0:amd64 (1.6.0-2) ... Setting up libsane:amd64 (1.0.24-8+deb8u2) ... Adding scanner group... Setting up libsctp1:amd64 (1.0.16+dfsg-2) ... Setting up libtcl8.6:amd64 (8.6.2+dfsg-2) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libtk8.6:amd64 (8.6.2-1) ... Setting up libtre5:amd64 (0.8.0-4+deb8u1) ... Setting up libtsan0:amd64 (4.9.2-10+deb8u1) ... Setting up libubsan0:amd64 (4.9.2-10+deb8u1) ... Setting up libwmf0.2-7:amd64 (0.2.8.4-10.3+deb8u2) ... Setting up libwxbase3.0-0:amd64 (3.0.2-1+b1) ... Setting up libwxgtk3.0-0:amd64 (3.0.2-1+b1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libxaw7:amd64 (2:1.0.12-2+b1) ... Setting up libxcb-shape0:amd64 (1.10-3+b1) ... Setting up libxmuu1:amd64 (2:1.1.2-1) ... Setting up libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Setting up libxv1:amd64 (2:1.0.10-1+deb8u1) ... Setting up libxxf86dga1:amd64 (2:1.1.4-1+b1) ... Setting up libyaml-0-2:amd64 (0.1.6-3) ... Setting up libzzip-0-13:amd64 (0.13.62-3+deb8u1) ... Setting up lua-filesystem:amd64 (1.6.2-3) ... Setting up lua-lpeg:amd64 (0.12-1) ... Setting up lua-md5:amd64 (1.2+git+1+8d87fee-1) ... Setting up poppler-data (0.4.7-1) ... Installing new version of config file /etc/ghostscript/cidfmap.d/90gs-cjk-resource-korea1.conf ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... Setting up libatlas3-base (3.10.2-7) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack3 (3.5.0-4) ... Setting up libfreecontact0 (1.0.21-3+b1) ... Setting up libhwloc5:amd64 (1.10.0-3) ... Setting up libmpc3:amd64 (1.0.2-1) ... Setting up libsystemd-login0:amd64 (215-17+deb8u7) ... Setting up libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libtxc_dxtn_s2tc.so.0 to provide /usr/lib/x86_64-linux-gnu/libtxc_dxtn.so (libtxc-dxtn-x86_64-linux-gnu) in auto mode Setting up libwebp5:amd64 (0.4.1-1.2+b2) ... Setting up libwebpdemux1:amd64 (0.4.1-1.2+b2) ... Setting up libwebpmux1:amd64 (0.4.1-1.2+b2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... Setting up dmidecode (2.12-3) ... Setting up isc-dhcp-common (4.3.1-6+deb8u3) ... Setting up isc-dhcp-client (4.3.1-6+deb8u3) ... Setting up libxtables10 (1.4.21-2+b1) ... Setting up manpages (3.74-1) ... Setting up debconf-i18n (1.5.56+deb8u1) ... Setting up bc (1.06.95-9) ... Setting up krb5-locales (1.12.1+dfsg-19+deb8u4) ... Setting up libclass-isa-perl (0.36-5) ... Setting up libswitch-perl (2.17-2) ... Setting up xz-utils (5.1.1alpha+20120614-2+b3) ... Setting up aevol (4.4-1) ... Setting up openssl (1.0.1t-1+deb8u8) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 174 added, 0 removed; done. Setting up tzdata-java (2018e-0+deb8u1) ... Setting up java-common (0.52) ... Setting up libcommons-pool-java (1.6-2) ... Setting up libcommons-collections3-java (3.2.1-7+deb8u1) ... Setting up libcommons-dbcp-java (1.4-5) ... Setting up libservlet2.5-java (6.0.45+dfsg-1~deb8u1) ... Setting up libhsqldb-java (2.2.9+dfsg-4) ... Setting up libapache-pom-java (10-2) ... Setting up libcommons-parent-java (22-2) ... Setting up libcommons-lang-java (2.6-4) ... Setting up libcommons-cli-java (1.2-3) ... Setting up libgsl0ldbl (1.16+dfsg-2) ... Setting up libtamuanova-0.2 (0.2-3) ... Setting up libmath-tamuanova-perl (1.0.2-2+b2) ... Setting up altree (1.3.1-2+b1) ... Setting up amap-align (2.2-4) ... Setting up libelk0 (3.99.8-2.1) ... Setting up libprotobuf9:amd64 (2.6.1-1) ... Setting up libanfo0 (0.98-4+b1) ... Setting up anfo (0.98-4+b1) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Setting up libaprutil1-ldap:amd64 (1.5.4-1) ... Setting up apache2-bin (2.4.10-10+deb8u12) ... Setting up aragorn (1.2.36-4) ... Setting up python-decorator (3.4.0-2) ... Setting up python-numpy (1:1.8.2-2) ... Setting up python-scipy (0.14.0-2) ... Setting up python-htseq (0.5.4p3-2) ... Setting up python-six (1.8.0-1) ... Setting up python-dateutil (2.2-2) ... Setting up fonts-lyx (2.1.2-2) ... Setting up python-matplotlib-data (1.4.2-3.1) ... Setting up python-pyparsing (2.0.3+dfsg1-1) ... Setting up python-tz (2012c+dfsg-0.1) ... Setting up libjs-jquery (1.7.2+dfsg-3.2) ... Setting up libjs-jquery-ui (1.10.1+dfsg-1) ... Setting up python-mock (1.0.1-3) ... Setting up python-pkg-resources (5.5.1-1) ... Setting up python-nose (1.3.4-1) ... Setting up python-matplotlib (1.4.2-3.1) ... Setting up arden (1.0-1) ... Setting up at-spi2-core (2.14.0-1) ... Setting up autodock (4.2.6-2) ... ---------------------------------------------------------------------- ______ / \ / \ / \ \ /\ / \ / \ / \/ /\ \/ / \ /____\ AutoDock and AutoGrid are free software, distributed under the terms of the GNU General Public License 2 or later. This allows us to share the code and to be open for improvement from the whole scientific community. The development of the AutoDock suite is entirely funded by research grants. For that reason, we ask you to register at the AutoDock Registration page http://autodock.scripps.edu/downloads/autodock-registration in order to keep track of number of unique downloads, which we use to support the grant applications. Installing the Debian popularity-contest package is also encouraged. Thank you, and happy docking! The AutoDock Development Team If you plan to use AutoDock for commercial purposes we encourage donations to the Olson laboratory to help support further development of the AutoDock 4 suite of programs. Donation information provided on the download page. ---------------------------------------------------------------------- Setting up autogrid (4.2.6-2) ... Setting up libbamtools2.3.0 (2.3.0+dfsg-2) ... Setting up libjsoncpp0 (0.6.0~rc2-3.1) ... Setting up bamtools (2.3.0+dfsg-2) ... Setting up bedtools (2.21.0-1) ... Setting up binutils (2.25-5+deb8u1) ... Setting up libhamcrest-java (1.3-5) ... Setting up libcommons-codec-java (1.9-1) ... Setting up libcommons-logging-java (1.2-1) ... Setting up libcommons-httpclient-java (3.1-11+deb8u1) ... Setting up libcommons-net2-java (2.2-2) ... Setting up libmail-java (1.5.2-3) ... Setting up libjcommon-java (1.0.16-4) ... Setting up libjaxen-java (1.1.6-1) ... Setting up libjdom1-java (1.1.3-1) ... Setting up libwsdl4j-java (1.6.3-1) ... Setting up libcommons-discovery-java (0.5-3) ... Setting up libaxis-java (1.4-22) ... Setting up libjava-xmlbuilder-java (0.4-2) ... Setting up libjets3t-java (0.8.1+dfsg-1) ... Setting up libjgoodies-common-java (1.4.0-2) ... Setting up libjgoodies-forms-java (1.6.0-4) ... Setting up libjzlib-java (1.1.3-1) ... Setting up libjsch-java (0.1.51-1) ... Setting up liblog4j1.2-java (1.2.17-5) ... Setting up libmysql-java (5.1.42-1~deb8u1) ... Setting up liboro-java (2.0.8a-9) ... Setting up libregexp-java (1.5-3) ... Setting up libisorelax-java (20041111-8) ... Setting up librelaxng-datatype-java (1.0+ds1-3) ... Setting up libxml-commons-resolver1.1-java (1.2-7) ... Setting up libxml-commons-external-java (1.4.01-2) ... Setting up libxerces2-java (2.11.0-7) ... Setting up libxpp2-java (2.1.10-7) ... Setting up libxpp3-java (1.1.4c-2) ... Setting up libxom-java (1.2.10-1) ... Setting up libdbi-perl (1.631-3+b1) ... Setting up libdbd-mysql-perl (4.028-2+deb8u2) ... Setting up libterm-readkey-perl (2.32-1+b1) ... Setting up mysql-client-5.5 (5.5.60-0+deb8u1) ... Setting up mysql-client (5.5.60-0+deb8u1) ... Setting up libdata-stag-perl (0.13-1) ... Setting up libbio-perl-perl (1.6.924-1) ... Setting up bioperl (1.6.924-1) ... Setting up libbio-perl-run-perl (1.6.9-2) ... Setting up bioperl-run (1.6.9-2) ... Setting up biosquid (1.9g+cvs20050121-4) ... Setting up blast2 (1:2.2.26.20120620-8) ... Setting up menu (2.1.47) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-1) ... Setting up blt (2.5.3+dfsg-1) ... Setting up boxshade (3.3.1-8) ... Setting up bwa (0.7.10-1) ... Setting up libcassie1 (1.0.1+dfsg-3+b1) ... Setting up cassiopee (1.0.1+dfsg-3+b1) ... Setting up cd-hit (4.6.1-2012-08-27-2) ... Setting up cdbfasta (0.99-20100722-1) ... Setting up clearcut (1.0.9-1) ... Setting up clonalframe (1.2-3) ... Setting up libargtable2-0 (12-1.1) ... Setting up clustalo (1.2.1-1) ... Setting up clustalw (2.1+lgpl-4) ... Setting up policykit-1 (0.105-15~deb8u2) ... Setting up colord-data (1.2.1-1) ... Setting up colord (1.2.1-1+b2) ... Setting up cpp-4.9 (4.9.2-10+deb8u1) ... Setting up cpp (4:4.9.2-2) ... Setting up cython (0.21.1-1) ... Setting up dialign (2.2.1-7) ... Setting up dialign-tx-data (1.0.2-7) ... Setting up dialign-tx (1.0.2-7) ... Setting up discosnp (1.2.5-1) ... Setting up dnaclust (3-2+b1) ... Setting up dssp (2.2.1-2+b1) ... Setting up libkpathsea6 (2014.20140926.35254-6) ... Setting up libptexenc1 (2014.20140926.35254-6) ... Setting up libjbig2dec0 (0.13-4~deb8u2) ... Setting up libgs9-common (9.06~dfsg-2+deb8u7) ... Setting up libpotrace0 (1.12-1+deb8u1) ... Setting up libsynctex1 (2014.20140926.35254-6) ... Setting up tex-common (5.03) ... Setting up libhpdf-2.2.1 (2.2.1-1.1) ... Setting up emboss-lib (6.6.0+dfsg-1) ... Setting up emboss-data (6.6.0+dfsg-1) ... Setting up emboss (6.6.0+dfsg-1) ... Setting up exonerate (2.2.0-6) ... Setting up fastdnaml (1.2.2-10) ... Setting up fastlink (4.1P-fix95-3) ... Setting up libcommons-math3-java (3.3-1) ... Setting up libjbzip2-java (0.9.1-3) ... Setting up libsam-java (1.113-1) ... Setting up fastqc (0.11.2+dfsg-3) ... Setting up libgtextutils0:amd64 (0.7-2) ... Setting up libgd-text-perl (0.86-9) ... Setting up libgd-graph-perl (1.48-2) ... Setting up libperlio-gzip-perl (0.18-3+b1) ... Setting up fastx-toolkit (0.0.14-1) ... Setting up filo (1.1+2011123001.1) ... Setting up python-pyrex (0.9.8.5-2.1) ... Setting up python-pysam (0.7.7-1) ... Setting up fitgcp (0.0.20130418-2) ... Setting up libtbb2 (4.2~20140122-5) ... Setting up flexbar (2.50-1) ... Setting up fonts-cabin (1.5-2) ... Setting up fonts-comfortaa (2.003-1) ... Setting up fonts-crosextra-caladea (20130214-1) ... Setting up fonts-crosextra-carlito (20130920-1) ... Setting up fonts-dejavu-extra (2.34-1) ... Setting up fonts-ebgaramond (0.015+git20130628-3) ... Setting up fonts-ebgaramond-extra (0.015+git20130628-3) ... Setting up fonts-font-awesome (4.2.0~dfsg-1) ... Setting up fonts-freefont-otf (20120503-4) ... Setting up fonts-freefont-ttf (20120503-4) ... Setting up fonts-gfs-artemisia (1.1-5) ... Setting up fonts-gfs-complutum (1.1-6) ... Setting up fonts-gfs-didot (1.1-6) ... Setting up fonts-gfs-neohellenic (1.1-6) ... Setting up fonts-gfs-olga (1.1-5) ... Setting up fonts-gfs-solomos (1.1-5) ... Setting up fonts-inconsolata (001.010-5) ... Setting up fonts-junicode (0.7.8-2) ... Setting up fonts-linuxlibertine (5.3.0-2) ... Setting up fonts-lmodern (2.004.4-5) ... Setting up fonts-lobster (2.0-2) ... Setting up fonts-lobstertwo (2.0-2) ... Setting up fonts-oflb-asana-math (000.907-6) ... Setting up fonts-sil-gentium (20081126:1.02-13) ... Setting up fonts-sil-gentium-basic (1.1-7) ... Setting up fonts-texgyre (20140520-1) ... Setting up libgcc-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Setting up gcc-4.9 (4.9.2-10+deb8u1) ... Setting up gcc (4:4.9.2-2) ... Setting up libstdc++-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Setting up g++-4.9 (4.9.2-10+deb8u1) ... Setting up g++ (4:4.9.2-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python-reportlab-accel:amd64 (3.1.8-3+deb8u1) ... Setting up python-reportlab (3.1.8-3+deb8u1) ... Setting up python-biopython (1.64+dfsg-5) ... Setting up bowtie (1.1.1-2) ... Setting up bowtie2 (2.2.4-1) ... Setting up seqan-apps (1.4.1+dfsg-2) ... Setting up gasic (0.0.r18-2) ... Setting up libglpk-java (1.0.37-1) ... Setting up glpk-utils (4.55-1) ... Setting up tophat (2.0.13+dfsg-1) ... Setting up giira (0.0.20140210-2) ... Setting up libcdt5 (2.38.0-7) ... Setting up libcgraph6 (2.38.0-7) ... Setting up libpathplan4 (2.38.0-7) ... Setting up libxdot4 (2.38.0-7) ... Setting up libgvc6 (2.38.0-7) ... Setting up libgvpr2 (2.38.0-7) ... Setting up graphviz (2.38.0-7) ... Setting up libgetopt-euclid-perl (0.4.5-1) ... Setting up libmath-random-mt-perl (1.16-1+b2) ... Setting up grinder (0.5.3-3) ... Setting up hmmer (3.1b1-3) ... Setting up idba (1.1.2-1) ... Setting up imagemagick-6.q16 (8:6.8.9.9-5+deb8u12) ... Setting up imagemagick (8:6.8.9.9-5+deb8u12) ... update-alternatives: warning: alternative /usr/bin/compare.im6 (part of link group compare) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/compare is dangling; it will be updated with best choice update-alternatives: using /usr/bin/compare-im6 to provide /usr/bin/compare (compare) in auto mode update-alternatives: warning: alternative /usr/bin/animate.im6 (part of link group animate) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/animate is dangling; it will be updated with best choice update-alternatives: using /usr/bin/animate-im6 to provide /usr/bin/animate (animate) in auto mode update-alternatives: warning: alternative /usr/bin/convert.im6 (part of link group convert) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/convert is dangling; it will be updated with best choice update-alternatives: using /usr/bin/convert-im6 to provide /usr/bin/convert (convert) in auto mode update-alternatives: warning: alternative /usr/bin/composite.im6 (part of link group composite) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/composite is dangling; it will be updated with best choice update-alternatives: using /usr/bin/composite-im6 to provide /usr/bin/composite (composite) in auto mode update-alternatives: warning: alternative /usr/bin/conjure.im6 (part of link group conjure) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/conjure is dangling; it will be updated with best choice update-alternatives: using /usr/bin/conjure-im6 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: warning: alternative /usr/bin/import.im6 (part of link group import) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/import is dangling; it will be updated with best choice update-alternatives: using /usr/bin/import-im6 to provide /usr/bin/import (import) in auto mode update-alternatives: warning: alternative /usr/bin/identify.im6 (part of link group identify) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/identify is dangling; it will be updated with best choice update-alternatives: using /usr/bin/identify-im6 to provide /usr/bin/identify (identify) in auto mode update-alternatives: warning: alternative /usr/bin/stream.im6 (part of link group stream) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/stream is dangling; it will be updated with best choice update-alternatives: using /usr/bin/stream-im6 to provide /usr/bin/stream (stream) in auto mode update-alternatives: warning: alternative /usr/bin/display.im6 (part of link group display) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/display is dangling; it will be updated with best choice update-alternatives: using /usr/bin/display-im6 to provide /usr/bin/display (display) in auto mode update-alternatives: warning: alternative /usr/bin/montage.im6 (part of link group montage) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/montage is dangling; it will be updated with best choice update-alternatives: using /usr/bin/montage-im6 to provide /usr/bin/montage (montage) in auto mode update-alternatives: warning: alternative /usr/bin/mogrify.im6 (part of link group mogrify) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/mogrify is dangling; it will be updated with best choice update-alternatives: using /usr/bin/mogrify-im6 to provide /usr/bin/mogrify (mogrify) in auto mode Setting up infernal (1.1.1-2) ... Setting up python-pexpect (3.2-1) ... Setting up python-simplegeneric (0.8.1-1) ... Setting up ipython (2.3.0-2) ... Setting up javascript-common (11) ... Setting up kalign (1:2.03+20110620-2) ... Setting up kissplice (2.2.1-3) ... Setting up last-align (490-1) ... Setting up liberror-perl (0.17-1.1) ... Setting up libipc-sharelite-perl (0.17-3+b2) ... Setting up libcache-cache-perl (1.07-2) ... Setting up libace-perl (1.92-3+b1) ... Setting up libalgorithm-c3-perl (0.09-1) ... Setting up libalgorithm-diff-perl (1.19.02-3) ... Setting up libalgorithm-diff-xs-perl (0.04-3+b1) ... Setting up libalgorithm-munkres-perl (0.08-2) ... Setting up libperl5.20 (5.20.2-3+deb8u11) ... Setting up libdevel-symdump-perl (2.12-1) ... Setting up liburi-perl (1.64-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libnet-http-perl (6.07-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libarchive-extract-perl (0.72-1) ... Setting up libclass-method-modifiers-perl (2.11-1) ... Setting up libsub-exporter-progressive-perl (0.001011-1) ... Setting up libdevel-globaldestruction-perl (0.13-1) ... Setting up libimport-into-perl (1.002004-1) ... Setting up librole-tiny-perl (1.003004-1) ... Setting up libstrictures-perl (1.005005-1) ... Setting up libmoo-perl (1.006001-1) ... Setting up libexporter-tiny-perl (0.038-2) ... Setting up libtype-tiny-perl (1.000004-1) ... Setting up libarray-compare-perl (2.11-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libb-hooks-op-check-perl (0.19-2+b1) ... Setting up libbambamc0 (0.0.50-1) ... Setting up liblexical-sealrequirehints-perl (0.007-1+b2) ... Setting up libbareword-filehandles-perl (0.003-1+b2) ... Setting up libbcprov-java (1.49+dfsg-3+deb8u2) ... Setting up libbio-asn1-entrezgene-perl (1.700-1) ... Setting up libcarp-clan-perl (6.04-1) ... Setting up libbit-vector-perl (7.3-1+b2) ... Setting up libbsd-resource-perl (1.2907-1+b2) ... Setting up libcgi-pm-perl (4.09-1) ... Setting up libfcgi-perl (0.77-1+deb8u1) ... Setting up libcgi-fast-perl (1:2.04-1) ... Setting up libclass-c3-perl (0.26-1) ... Setting up libclass-c3-xs-perl (0.13-2+b1) ... Setting up libclass-inspector-perl (1.28-1) ... Setting up libclass-xsaccessor-perl (1.19-2+b4) ... Setting up libcofoja-java (1.1-r150-2) ... Setting up libcommons-jexl2-java (2.1.1-2) ... Setting up libconvert-binary-c-perl (0.76-3+b2) ... Setting up libconvert-binhex-perl (1.123-2) ... Setting up libcpan-meta-perl (2.142690-1) ... Setting up libcr0 (0.8.5-2.2) ... Setting up libcrypt-rc4-perl (2.02-2) ... Setting up libcrypt-ssleay-perl (0.58-1+b2) ... Setting up libparams-util-perl (1.07-2+b1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libdata-optlist-perl (0.109-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up libdata-section-perl (0.200006-1) ... Setting up libdate-calc-perl (6.3-2) ... Setting up libdate-calc-xs-perl (6.3-2) ... Setting up libdate-manip-perl (6.47-1) ... Setting up libdbd-pg-perl (3.4.2-1) ... Setting up libdbd-sqlite3-perl (1.44-1) ... Setting up libpadwalker-perl (1.98-1+b1) ... Setting up libdevel-caller-perl (2.06-1+b2) ... Setting up libdevel-lexalias-perl (0.05-1+b2) ... Setting up libdigest-perl-md5-perl (1.9-1) ... Setting up libfile-copy-recursive-perl (0.38-1) ... Setting up libfile-desktopentry-perl (0.07-1) ... Setting up libfile-which-perl (1.09-1) ... Setting up libfile-homedir-perl (1.00-1) ... Setting up libfile-mimeinfo-perl (0.26-1) ... Setting up libfile-slurp-tiny-perl (0.003-1) ... Setting up libfont-afm-perl (1.20-1) ... Setting up libfreezethaw-perl (0.5001-1) ... Setting up libg20 (0.72-5+b1) ... Setting up libglib2.0-data (2.42.1-1) ... Setting up libgphoto2-l10n (2.5.4-1.1) ... Setting up libheap-perl (0.80-2) ... Setting up libgraph-perl (1:0.96-1.1) ... Setting up libio-pty-perl (1:1.08-1+b4) ... Setting up libipc-run-perl (0.92-1+deb8u1) ... Setting up libparse-recdescent-perl (1.967009+dfsg-1) ... Setting up libgtk2.0-bin (2.24.25-3+deb8u2) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libhtml-format-perl (2.11-1) ... Setting up libhtml-tableextract-perl (2.11-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libindirect-perl (0.33-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libio-stringy-perl (2.110-5) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up libjs-underscore (1.7.0~dfsg-1) ... Setting up liblensfun-data (0.2.8-2) ... Setting up liblensfun0 (0.2.8-2) ... Setting up liblog-message-perl (0.8-1) ... Setting up liblog-message-simple-perl (0.10-2) ... Setting up libmagickcore-6.q16-2-extra:amd64 (8:6.8.9.9-5+deb8u12) ... Setting up libnet-smtp-ssl-perl (1.01-3) ... Setting up libmailtools-perl (2.13-1) ... Setting up libmath-derivative-perl (0.01-6) ... Setting up libmath-spline-perl (0.02-1) ... Setting up libmime-tools-perl (5.505-1) ... Setting up libmldbm-perl (2.05-1) ... Setting up libmodule-build-perl (0.421000-2+deb8u1) ... Setting up libmodule-pluggable-perl (5.1-1) ... Setting up libmodule-signature-perl (0.73-1+deb8u2) ... Setting up libmultidimensional-perl (0.010-1+b2) ... Setting up libnetpbm10 (2:10.0-15.2) ... Setting up netpbm (2:10.0-15.2) ... Setting up libole-storage-lite-perl (0.19-1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b1) ... Setting up libpackage-constants-perl (0.04-1) ... Setting up libpam-cap:amd64 (1:2.24-8) ... Setting up libpaper-utils (1.1.24+nmu4) ... Setting up libperl4-corelibs-perl (0.003-1) ... Setting up libpod-coverage-perl (0.23-1) ... Setting up libpod-latex-perl (0.61-1) ... Setting up libpod-readme-perl (0.11-1) ... Setting up libpostscript-perl (0.06-2) ... Setting up libpython-dev:amd64 (2.7.9-1) ... Setting up libpython-all-dev:amd64 (2.7.9-1) ... Setting up libsane-extras-common (1.0.22.3) ... Setting up libsane-extras:amd64 (1.0.22.3) ... Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up libtext-template-perl (1.46-1) ... Setting up libsoftware-license-perl (0.103010-3) ... Setting up libsort-naturally-perl (1.03-1) ... Setting up libspreadsheet-writeexcel-perl (2.40-1) ... Setting up libunicode-map-perl (0.112-11+b1) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1) ... Setting up libstatistics-descriptive-perl (3.0607-1) ... Setting up libsub-name-perl (0.12-1) ... Setting up libsvg-perl (2.59-1) ... Setting up libtree-dagnode-perl (1.22-1) ... Setting up libsvg-graph-perl (0.02-2) ... Setting up libtcmalloc-minimal4 (2.2.1-0.2) ... Setting up libterm-ui-perl (0.42-1) ... Setting up libtest-pod-perl (1.48-1) ... Setting up libtext-soundex-perl (3.4-1+b2) ... Setting up libtie-ixhash-perl (1.23-1) ... Setting up libtype-tiny-xs-perl (0.010-1) ... Setting up libutempter0 (1.1.5-4) ... Creating utempter group... Setting up libx11-protocol-perl (0.56-6) ... Setting up libxerces-c3.1:amd64 (3.1.1-5.1+deb8u4) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-filter-buffertext-perl (1.01-5) ... Setting up libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxslt-perl (1.92-1+b1) ... Setting up libxml-sax-writer-perl (0.54-1) ... Setting up libxml-simple-perl (2.20-1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libyaml-libyaml-perl (0.41-6) ... Setting up libyaml-perl (1.13-1) ... Setting up libyaml-tiny-perl (1.64-1) ... Setting up lksctp-tools (1.0.16+dfsg-2) ... Setting up lmodern (2.004.4-5) ... Setting up loki (2.4.7.4-5) ... Setting up macs (2.0.9.1-1) ... Setting up mafft (7.205-1) ... Setting up manpages-dev (3.74-1) ... Setting up mapsembler2 (2.1.6+dfsg-1) ... Setting up maq (0.7.1-5) ... Setting up melting (4.3.1+dfsg-1) ... Setting up minia (1.6088-1) ... Setting up mira-assembler (4.0.2-1+b1) ... Setting up mothur (1.33.3+dfsg-2) ... Setting up muscle (1:3.8.31-1) ... Setting up mustang (3.2.2-1) ... Setting up ncbi-blast+ (2.2.29-3) ... Setting up ncbi-epcr (2.3.12-1-2) ... Setting up ncbi-tools-bin (6.1.20120620-8) ... Setting up ncoils (2002-4) ... Setting up parsinsert (1.04-1) ... Setting up perl-doc (5.20.2-3+deb8u11) ... Setting up perl-tk (1:804.032-3+b3) ... Setting up perm (0.4.0-1) ... Setting up phyml (2:20120412-2) ... Setting up phyutility (2.7.3-1) ... Setting up pkg-config (0.28-1) ... Setting up plink (1.07-3) ... Setting up poa (2.0+20060928-3) ... Setting up prank (0.0.140110-1) ... Setting up xdg-utils (1.1.0~rc1+git20111210-7.4+deb8u1) ... Setting up preview-latex-style (11.87-3+deb8u1) ... Setting up primer3 (2.3.6-1) ... Setting up probalign (1.4-3) ... Setting up probcons (1.12-9) ... Setting up proda (1.0-8) ... Setting up psmisc (22.21-2) ... Setting up python-all (2.7.9-1) ... Setting up python2.7-dev (2.7.9-2+deb8u1) ... Setting up python-dev (2.7.9-1) ... Setting up python-all-dev (2.7.9-1) ... Setting up python-biopython-doc (1.64+dfsg-5) ... Setting up python-cairo (1.8.8-1+b2) ... Setting up python-gobject-2 (2.28.6-12+b1) ... Setting up python-gtk2 (2.24.0-4) ... Setting up python-glade2 (2.24.0-4) ... Setting up python-gmpy (1.15-1) ... Setting up python-pil:amd64 (2.6.1-2+deb8u3) ... Setting up python-imaging (2.6.1-2+deb8u3) ... Setting up python-mpmath (0.19-1) ... Setting up python-pyglet (1.1.4.dfsg-2) ... Setting up python-renderpm:amd64 (3.1.8-3+deb8u1) ... Setting up python-sympy (0.7.5-3) ... Setting up python-tk (2.7.8-2+b1) ... Setting up python-wxversion (3.0.1.1+dfsg-2) ... Setting up python-wxgtk3.0 (3.0.1.1+dfsg-2) ... update-alternatives: using /usr/lib/wx/python/wx3.0.pth to provide /usr/lib/wx/python/wx.pth (wx.pth) in auto mode Setting up rename (0.20-3) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up rnahybrid (2.1.1-2) ... Setting up rtax (0.984-2) ... Setting up rubygems-integration (1.8) ... Setting up libruby2.1:amd64 (2.1.5-2+deb8u3) ... Setting up ruby2.1 (2.1.5-2+deb8u3) ... Setting up ruby (1:2.1.5+deb8u2) ... Setting up samtools (0.1.19-1) ... Setting up update-inetd (4.43) ... Setting up sane-utils (1.0.24-8+deb8u2) ... Adding saned group and user... Adding user saned to group scanner invoke-rc.d: policy-rc.d denied execution of start. Setting up sim4 (0.0.20121010-1) ... Setting up smalt (0.7.6-4) ... Setting up ssake (3.8.2-1) ... Setting up t-coffee (11.00.8cbe486-1) ... Setting up tcl8.6 (8.6.2+dfsg-2) ... Setting up tcl (8.6.0+8) ... Setting up tcpd (7.6.q-25) ... Setting up tex-gyre (20140520-1) ... Setting up ttf-adf-universalis (0.20090423-2) ... Setting up ttf-adf-gillius (0.20090423-2) ... Setting up fonts-stix (1.1.1-1) ... Setting up ttf-adf-accanthis (0.20090423-2) ... Setting up tigr-glimmer (3.02-3) ... Setting up tk8.6 (8.6.2-1) ... Setting up tk (8.6.0+8) ... Setting up tm-align (20140601+dfsg-1) ... Setting up ufraw-batch (0.20-2+deb8u1) ... Setting up velvet (1.2.10+dfsg1-1) ... Setting up xbitmaps (1.1.1-2) ... Setting up xterm (312-2) ... update-alternatives: using /usr/bin/xterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode update-alternatives: using /usr/bin/lxterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode Setting up wise-data (2.4.1-17) ... Setting up wise (2.4.1-17) ... Setting up x11-utils (7.7+2) ... Setting up x11-xserver-utils (7.7+3+b1) ... Setting up xdg-user-dirs (0.15-2) ... Setting up acedb-other (4.9.39+dfsg.01-5) ... Setting up libibverbs1 (1.1.8-1.1) ... Setting up libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Setting up ampliconnoise (1.29-2) ... Setting up autodock-vina (1.1.2-3+b1) ... Setting up libeigen3-dev (3.2.2-3) ... Setting up cain-solvers (1.9-8) ... Setting up cain (1.9-8) ... Setting up cain-examples (1.9-8) ... Setting up concavity (0.1-2) ... Setting up datamash (1.0.6-2) ... Setting up disulfinder-data (1.2.11-4) ... Setting up disulfinder (1.2.11-4) ... Setting up fasttree (2.1.7-2) ... Setting up freecontact (1.0.21-3+b1) ... Setting up genometools-common (1.5.3-2) ... Setting up genometools (1.5.3-2) ... Setting up libhwloc-plugins (1.10.0-3) ... Setting up libset-scalar-perl (1.29-1) ... Setting up lynx-cur (2.8.9dev1-2+deb8u1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx (2.8.9dev1-2+deb8u1) ... Setting up openmpi-common (1.6.5-9.1+deb8u1) ... Setting up openmpi-bin (1.6.5-9.1+deb8u1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up python-cogent (1.5.3-2) ... Processing triggers for menu (2.1.47) ... Setting up blends-common (0.6.92.2) ... Setting up med-config (2.0) ... Setting up tasksel-data (3.31+deb8u1) ... Setting up tasksel (3.31+deb8u1) ... Setting up libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Setting up libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Setting up libgtk-3-bin (3.14.5-1+deb8u1) ... Setting up adwaita-icon-theme (3.14.0-2) ... Setting up openjdk-7-jre-headless:amd64 (7u181-2.6.14-1~deb8u1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up default-jre-headless (2:1.7-52) ... Setting up openjdk-7-jre:amd64 (7u181-2.6.14-1~deb8u1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up default-jre (2:1.7-52) ... Setting up libbytecode-java (0.92.svn.20090106-1.1) ... Setting up libbiojava1.7-java (1:1.7.1-5) ... Setting up libbiojava-java (1:1.7.1-5) ... Setting up alien-hunter (1.7-3) ... Setting up ant (1.9.4-3) ... Setting up ant-optional (1.9.4-3) ... Setting up ant-contrib (1.0~b3+svn177-6) ... Setting up junit4 (4.11-3) ... Setting up libmsv-java (2009.1+dfsg1-4) ... Setting up libdom4j-java (1.6.1+dfsg.3-2) ... Setting up libsaxonb-java (9.1.0.8+dfsg-1) ... Setting up biomaj (1.2.3-4) ... Setting up libgs9 (9.06~dfsg-2+deb8u7) ... Setting up ghostscript (9.06~dfsg-2+deb8u7) ... Setting up texlive-binaries (2014.20140926.35254-6) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Building format(s) --refresh. This may take some time... done. Setting up dvipng (1.14-2+b1) ... Setting up libwww-perl (6.08-1) ... Setting up libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... Setting up libapache-dbi-perl (1.12-1) ... Setting up libapache2-reload-perl (0.12-3) ... Setting up libxml-parser-perl (2.41-3) ... Setting up libxml-twig-perl (1:3.48-1) ... Setting up libxml-xpath-perl (1.13-7) ... Setting up libgraphviz-perl (2.16-1) ... Setting up libnet-dbus-perl (1.0.0-2+b2) ... Setting up libsoap-lite-perl (1.11-1) ... Setting up libxml-perl (0.08-2) ... Setting up libxml-dom-perl (1.44-1) ... Setting up libxml-dom-xpath-perl (0.14-1) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxmlrpc-lite-perl (0.717-1) ... Setting up mipe (1.1-4) ... Setting up picard-tools (1.113-1) ... Setting up texlive-base (2014.20141024-2+deb8u1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Setting up ps2eps (1.68+binaryfree-1) ... Setting up raster3d (3.0-3-1) ... Setting up med-tasks (2.0) ... Setting up med-cloud (2.0) ... Setting up libgtk-3-common (3.14.5-1+deb8u1) ... Setting up libgtk-3-0:amd64 (3.14.5-1+deb8u1) ... Setting up libcanberra-gtk3-0:amd64 (0.30-2.1) ... Setting up ca-certificates-java (20140324) ... Adding debian:spi-cacert-2008.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:WoSign_China.pem Adding debian:WoSign.pem Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:UTN_USERFirst_Email_Root_CA.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H6.pem Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem Adding debian:TC_TrustCenter_Class_3_CA_II.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Swisscom_Root_EV_CA_2.pem Adding debian:Swisscom_Root_CA_2.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Platinum_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:StartCom_Certification_Authority_G2.pem Adding debian:StartCom_Certification_Authority_2.pem Adding debian:StartCom_Certification_Authority.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:S-TRUST_Universal_Root_CA.pem Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Adding debian:Root_CA_Generalitat_Valenciana.pem Adding debian:RSA_Security_2048_v3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:PSCProcert.pem Adding debian:OpenTrust_Root_CA_G3.pem Adding debian:OpenTrust_Root_CA_G2.pem Adding debian:OpenTrust_Root_CA_G1.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsec_e-Szigno_Root_CA.pem Adding debian:Juur-SK.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:IGC_A.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:Equifax_Secure_eBusiness_CA_1.pem Adding debian:Equifax_Secure_Global_eBusiness_CA.pem Adding debian:Equifax_Secure_CA.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:DST_Root_CA_X3.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:ComSign_CA.pem Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Root_CA.pem Adding debian:Certplus_Root_CA_G2.pem Adding debian:Certplus_Root_CA_G1.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:Certigna.pem Adding debian:Certification_Authority_of_WoSign_G2.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CNNIC_ROOT.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_WoSign_ECC_Root.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CA_Disig_Root_R1.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_2_CA_1.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:ApplicationCA_-_Japanese_Government.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:AddTrust_External_Root.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_Raíz_Certicámara_S.A..pem Adding debian:ACEDICOM_Root.pem Adding debian:ACCVRAIZ1.pem done. Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libcanberra-gtk3-module:amd64 (0.30-2.1) ... Setting up notification-daemon (0.7.6-2) ... Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-generic-recommended (2014.20141024-2+deb8u1) ... Setting up texlive-font-utils (2014.20141024-1) ... Setting up texlive-fonts-extra (2014.20141024-1) ... Setting up texlive-fonts-extra-doc (2014.20141024-1) ... Setting up texlive-fonts-recommended (2014.20141024-2+deb8u1) ... Setting up texlive-fonts-recommended-doc (2014.20141024-2+deb8u1) ... Setting up texlive-latex-base-doc (2014.20141024-2+deb8u1) ... Setting up texlive-latex-extra-doc (2014.20141024-1) ... Setting up texlive-latex-recommended-doc (2014.20141024-2+deb8u1) ... Setting up texlive-pictures-doc (2014.20141024-2+deb8u1) ... Setting up texlive-pstricks-doc (2014.20141024-1) ... Setting up texlive-latex-base (2014.20141024-2+deb8u1) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-extra-utils (2014.20141024-1) ... Setting up tipa (2:1.3-20) ... Setting up texlive-latex-recommended (2014.20141024-2+deb8u1) ... Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-pictures (2014.20141024-2+deb8u1) ... Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-pstricks (2014.20141024-1) ... Setting up texlive-latex-extra (2014.20141024-1) ... Setting up prerex (6.5.3-1) ... Setting up vprerex (6.5.3-1) ... Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up prosper (1.00.4+cvs.2007.05.01-4) ... Running mktexlsr. This may take some time... done. Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u7) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d.... done. done. Processing triggers for dbus (1.8.22-0+deb8u1) ... Processing triggers for python-support (1.0.15) ... Processing triggers for menu (2.1.47) ... 9m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', '-yf', 'dist-upgrade'] 9m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 9m22.3s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 9m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 9m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 9m22.3s DUMP: Package: med-cloud Source: debian-med Version: 2.0 Installed-Size: 62 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-tasks (= 2.0), med-config (= 2.0) Recommends: acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, anfo, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, biomaj, bioperl, bioperl-run, biosquid, blast2, bowtie, bowtie2, boxshade, bwa, cain, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, concavity, datamash, discosnp, disulfinder, dnaclust, dssp, fastdnaml, fastlink, fastqc, fasttree, fastx-toolkit, filo, fitgcp, flexbar, freecontact, gasic, genometools, giira, grinder, idba, infernal, kissplice, last-align, loki, macs, mapsembler2, maq, melting, minia, mipe, mira-assembler, mothur, ncbi-epcr, ncbi-tools-bin, ncoils, parsinsert, perm, phyml, phyutility, picard-tools, plink, primer3, python-cogent, rnahybrid, rtax, samtools, smalt, ssake, tophat, velvet Suggests: abyss, bagpipe, cufflinks Description-en: Debian Med bioinformatics applications usable in cloud computing This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited. Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: misc Priority: extra Filename: pool/main/d/debian-med/med-cloud_2.0_all.deb Size: 12626 MD5sum: 5438d9d8a05ad2b2f9cb232353c11e84 SHA1: ad9c6bec2b1c85762067b095cca812dfe532803b SHA256: d26fbc16c0666a65fe6895f37f6851940fc247726cbc11260c7f49f182f77c42 9m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 9m22.3s INFO: apt-cache knows about the following packages: med-cloud 9m22.3s INFO: Running scripts pre_install 9m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_database-server'] 9m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_database-server'] 9m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_exceptions'] 9m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_exceptions'] 9m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_extras'] 9m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_extras'] 9m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_foreign_architecture'] 9m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_foreign_architecture'] 9m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_foreign_architecture_i386'] 9m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_foreign_architecture_i386'] 9m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'policy'] 9m22.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ jessie/main Translation-en 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 9m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'policy'] 9m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'policy', 'med-cloud'] 9m22.6s DUMP: med-cloud: Installed: 2.0 Candidate: 2.0 Version table: *** 2.0 0 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 9m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'policy', 'med-cloud'] 9m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', '-y', 'install', 'med-cloud'] 9m23.3s DUMP: Reading package lists... Building dependency tree... Reading state information... med-cloud is already the newest version. The following packages were automatically installed and are no longer required: libclass-isa-perl libexiv2-12 libffi5 libgcrypt11 libgd2-xpm libgnutls26 libjpeg8 libjs-underscore liblcms1 libmagickcore5 libmagickcore5-extra libmagickwand5 libpango1.0-0 libswitch-perl libsystemd-login0 libtasn1-3 libtiff4 raster3d ttf-dejavu-core wwwconfig-common Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 9m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', '-y', 'install', 'med-cloud'] 9m23.3s INFO: Running scripts post_install 9m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_install_exceptions'] 9m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_install_exceptions'] 9m23.4s INFO: Running scripts post_distupgrade 9m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_base_cleanup'] 9m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_base_cleanup'] 9m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_exceptions'] 9m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_exceptions'] 9m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_experimental'] 9m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_experimental'] 9m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 9m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 9m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_hack_debsums'] 9m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_hack_debsums'] 9m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_squeeze-backports'] 9m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_squeeze-backports'] 9m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_zz_backports'] 9m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_distupgrade_zz_backports'] 9m23.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 9m39.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 9m39.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 9m54.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 9m54.7s INFO: Running scripts pre_install 9m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_database-server'] 9m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_database-server'] 9m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_exceptions'] 9m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_exceptions'] 9m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_extras'] 9m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_extras'] 9m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_foreign_architecture'] 9m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_foreign_architecture'] 9m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_foreign_architecture_i386'] 9m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_install_foreign_architecture_i386'] 9m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'policy'] 9m54.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ jessie/main Translation-en 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 9m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'policy'] 9m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'policy', 'med-cloud'] 9m54.9s DUMP: med-cloud: Installed: 2.0 Candidate: 2.0 Version table: *** 2.0 0 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 9m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-cache', 'policy', 'med-cloud'] 9m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', '-y', 'install', 'med-cloud=2.0'] 9m55.8s DUMP: Reading package lists... Building dependency tree... Reading state information... med-cloud is already the newest version. The following packages were automatically installed and are no longer required: libclass-isa-perl libexiv2-12 libffi5 libgcrypt11 libgd2-xpm libgnutls26 libjpeg8 libjs-underscore liblcms1 libmagickcore5 libmagickcore5-extra libmagickwand5 libpango1.0-0 libswitch-perl libsystemd-login0 libtasn1-3 libtiff4 raster3d ttf-dejavu-core wwwconfig-common Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 9m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', '-y', 'install', 'med-cloud=2.0'] 9m55.8s INFO: Running scripts post_install 9m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_install_exceptions'] 9m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_install_exceptions'] 9m56.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 10m12.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 10m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 10m12.1s DUMP: install ok installed acedb-other acedb-other 4.9.39+dfsg.01-5 install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed adwaita-icon-theme adwaita-icon-theme 3.14.0-2 install ok installed aevol aevol 4.4-1 install ok installed alien-hunter alien-hunter 1.7-3 install ok installed altree altree 1.3.1-2+b1 install ok installed amap-align amap-align 2.2-4 install ok installed ampliconnoise ampliconnoise 1.29-2 install ok installed anfo anfo 0.98-4+b1 install ok installed ant ant 1.9.4-3 install ok installed ant-contrib ant-contrib 1.0~b3+svn177-6 install ok installed ant-optional ant-optional 1.9.4-3 install ok installed apache2-bin apache2-bin 2.4.10-10+deb8u12 install ok installed apt apt 1.0.9.8.4 install ok installed aragorn aragorn 1.2.36-4 install ok installed arden arden 1.0-1 install ok installed at-spi2-core at-spi2-core 2.14.0-1 install ok installed autodock autodock 4.2.6-2 install ok installed autodock-vina autodock-vina 1.1.2-3+b1 install ok installed autogrid autogrid 4.2.6-2 install ok installed bamtools bamtools 2.3.0+dfsg-2 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bc bc 1.06.95-9 install ok installed bedtools bedtools 2.21.0-1 install ok installed binutils binutils 2.25-5+deb8u1 install ok installed biomaj biomaj 1.2.3-4 install ok installed bioperl bioperl 1.6.924-1 install ok installed bioperl-run bioperl-run 1.6.9-2 install ok installed biosquid biosquid 1.9g+cvs20050121-4 install ok installed blast2 blast2 1:2.2.26.20120620-8 install ok installed blends-common blends-common 0.6.92.2 install ok installed blt blt 2.5.3+dfsg-1 install ok installed bowtie bowtie 1.1.1-2 install ok installed bowtie2 bowtie2 2.2.4-1 install ok installed boxshade boxshade 3.3.1-8 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed bwa bwa 0.7.10-1 install ok installed ca-certificates ca-certificates 20141019+deb8u3 install ok installed ca-certificates-java ca-certificates-java 20140324 install ok installed cain cain 1.9-8 install ok installed cain-examples cain-examples 1.9-8 install ok installed cain-solvers cain-solvers 1.9-8 install ok installed cassiopee cassiopee 1.0.1+dfsg-3+b1 install ok installed cd-hit cd-hit 4.6.1-2012-08-27-2 install ok installed cdbfasta cdbfasta 0.99-20100722-1 install ok installed cgmanager cgmanager 0.33-2+deb8u2 install ok installed circos circos 0.66-1 install ok installed circos-tools circos-tools 0.18-1 install ok installed clearcut clearcut 1.0.9-1 install ok installed clonalframe clonalframe 1.2-3 install ok installed clustalo clustalo 1.2.1-1 install ok installed clustalw clustalw 2.1+lgpl-4 install ok installed colord colord 1.2.1-1+b2 install ok installed colord-data colord-data 1.2.1-1 install ok installed concavity concavity 0.1-2 install ok installed coreutils coreutils 8.23-4 install ok installed cpp cpp 4:4.9.2-2 install ok installed cpp-4.9 cpp-4.9 4.9.2-10+deb8u1 install ok installed cython cython 0.21.1-1 install ok installed dash dash 0.5.7-4+b1 install ok installed datamash datamash 1.0.6-2 install ok installed dbus dbus 1.8.22-0+deb8u1 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.22.0-1 install ok installed dconf-service dconf-service 0.22.0-1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed default-jre default-jre 2:1.7-52 install ok installed default-jre-headless default-jre-headless 2:1.7-52 install ok installed dialign dialign 2.2.1-7 install ok installed dialign-tx dialign-tx 1.0.2-7 install ok installed dialign-tx-data dialign-tx-data 1.0.2-7 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed discosnp discosnp 1.2.5-1 install ok installed disulfinder disulfinder 1.2.11-4 install ok installed disulfinder-data disulfinder-data 1.2.11-4 install ok installed dmidecode dmidecode 2.12-3 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dnaclust dnaclust 3-2+b1 install ok installed dpkg dpkg 1.17.27 install ok installed dssp dssp 2.2.1-2+b1 install ok installed dvipng dvipng 1.14-2+b1 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed emboss emboss 6.6.0+dfsg-1 install ok installed emboss-data emboss-data 6.6.0+dfsg-1 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-1 install ok installed exonerate exonerate 2.2.0-6 install ok installed fastdnaml fastdnaml 1.2.2-10 install ok installed fastlink fastlink 4.1P-fix95-3 install ok installed fastqc fastqc 0.11.2+dfsg-3 install ok installed fasttree fasttree 2.1.7-2 install ok installed fastx-toolkit fastx-toolkit 0.0.14-1 install ok installed file file 1:5.22+15-2+deb8u4 install ok installed filo filo 1.1+2011123001.1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fitgcp fitgcp 0.0.20130418-2 install ok installed flexbar flexbar 2.50-1 install ok installed fontconfig fontconfig 2.11.0-6.3+deb8u1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-cabin fonts-cabin 1.5-2 install ok installed fonts-circos-symbols fonts-circos-symbols 0.66-1 install ok installed fonts-cmu fonts-cmu 0.7.0-3 install ok installed fonts-comfortaa fonts-comfortaa 2.003-1 install ok installed fonts-crosextra-caladea fonts-crosextra-caladea 20130214-1 install ok installed fonts-crosextra-carlito fonts-crosextra-carlito 20130920-1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.34-1 install ok installed fonts-droid fonts-droid 1:4.4.4r2-6 install ok installed fonts-ebgaramond fonts-ebgaramond 0.015+git20130628-3 install ok installed fonts-ebgaramond-extra fonts-ebgaramond-extra 0.015+git20130628-3 install ok installed fonts-font-awesome fonts-font-awesome 4.2.0~dfsg-1 install ok installed fonts-freefont-otf fonts-freefont-otf 20120503-4 install ok installed fonts-freefont-ttf fonts-freefont-ttf 20120503-4 install ok installed fonts-gfs-artemisia fonts-gfs-artemisia 1.1-5 install ok installed fonts-gfs-complutum fonts-gfs-complutum 1.1-6 install ok installed fonts-gfs-didot fonts-gfs-didot 1.1-6 install ok installed fonts-gfs-neohellenic fonts-gfs-neohellenic 1.1-6 install ok installed fonts-gfs-olga fonts-gfs-olga 1.1-5 install ok installed fonts-gfs-solomos fonts-gfs-solomos 1.1-5 install ok installed fonts-inconsolata fonts-inconsolata 001.010-5 install ok installed fonts-junicode fonts-junicode 0.7.8-2 install ok installed fonts-lato fonts-lato 2.0-1 install ok installed fonts-liberation fonts-liberation 1.07.4-1 install ok installed fonts-linuxlibertine fonts-linuxlibertine 5.3.0-2 install ok installed fonts-lmodern fonts-lmodern 2.004.4-5 install ok installed fonts-lobster fonts-lobster 2.0-2 install ok installed fonts-lobstertwo fonts-lobstertwo 2.0-2 install ok installed fonts-lyx fonts-lyx 2.1.2-2 install ok installed fonts-oflb-asana-math fonts-oflb-asana-math 000.907-6 install ok installed fonts-sil-gentium fonts-sil-gentium 20081126:1.02-13 install ok installed fonts-sil-gentium-basic fonts-sil-gentium-basic 1.1-7 install ok installed fonts-stix fonts-stix 1.1.1-1 install ok installed fonts-texgyre fonts-texgyre 20140520-1 install ok installed freecontact freecontact 1.0.21-3+b1 install ok installed g++ g++ 4:4.9.2-2 install ok installed g++-4.9 g++-4.9 4.9.2-10+deb8u1 install ok installed gasic gasic 0.0.r18-2 install ok installed gcc gcc 4:4.9.2-2 install ok installed gcc-4.9 gcc-4.9 4.9.2-10+deb8u1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed genometools genometools 1.5.3-2 install ok installed genometools-common genometools-common 1.5.3-2 install ok installed ghostscript ghostscript 9.06~dfsg-2+deb8u7 install ok installed giira giira 0.0.20140210-2 install ok installed glib-networking:amd64 glib-networking 2.42.0-2 install ok installed glib-networking-common glib-networking-common 2.42.0-2 install ok installed glib-networking-services glib-networking-services 2.42.0-2 install ok installed glpk-utils glpk-utils 4.55-1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed graphviz graphviz 2.38.0-7 install ok installed grep grep 2.20-4.1 install ok installed grinder grinder 0.5.3-3 install ok installed gsettings-desktop-schemas gsettings-desktop-schemas 3.14.1-1 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.2 install ok installed gzip gzip 1.6-4 install ok installed hicolor-icon-theme hicolor-icon-theme 0.13-1 install ok installed hmmer hmmer 3.1b1-3 install ok installed hostname hostname 3.15 install ok installed idba idba 1.1.2-1 install ok installed ifupdown ifupdown 0.7.53.1 install ok installed imagemagick imagemagick 8:6.8.9.9-5+deb8u12 install ok installed imagemagick-6.q16 imagemagick-6.q16 8:6.8.9.9-5+deb8u12 install ok installed imagemagick-common imagemagick-common 8:6.8.9.9-5+deb8u12 install ok installed infernal infernal 1.1.1-2 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed iproute iproute 1:3.16.0-2 install ok installed iproute2 iproute2 3.16.0-2 install ok installed ipython ipython 2.3.0-2 install ok installed isc-dhcp-client isc-dhcp-client 4.3.1-6+deb8u3 install ok installed isc-dhcp-common isc-dhcp-common 4.3.1-6+deb8u3 install ok installed java-common java-common 0.52 install ok installed javascript-common javascript-common 11 install ok installed junit4 junit4 4.11-3 install ok installed kalign kalign 1:2.03+20110620-2 install ok installed kissplice kissplice 2.2.1-3 install ok installed krb5-locales krb5-locales 1.12.1+dfsg-19+deb8u4 install ok installed laptop-detect laptop-detect 0.13.7 install ok installed last-align last-align 490-1 install ok installed libace-perl libace-perl 1.92-3+b1 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.09-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.02-3 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-3+b1 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-2 install ok installed libamd2.3.1:amd64 libamd2.3.1 1:4.2.1-3 install ok installed libanfo0 libanfo0 0.98-4+b1 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-1 install ok installed libapache-pom-java libapache-pom-java 10-2 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.9~1624218-2+deb8u2 install ok installed libapache2-reload-perl libapache2-reload-perl 0.12-3 install ok installed libapr1:amd64 libapr1 1.5.1-3 install ok installed libaprutil1:amd64 libaprutil1 1.5.4-1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.5.4-1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.5.4-1 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libarchive-extract-perl libarchive-extract-perl 0.72-1 install ok installed libargtable2-0 libargtable2-0 12-1.1 install ok installed libarray-compare-perl libarray-compare-perl 2.11-1 install ok installed libart-2.0-2:amd64 libart-2.0-2 2.3.21-2 install ok installed libasan1:amd64 libasan1 4.9.2-10+deb8u1 install ok installed libasound2:amd64 libasound2 1.0.28-1 install ok installed libasound2-data libasound2-data 1.0.28-1 install ok installed libasyncns0:amd64 libasyncns0 0.8-5 install ok installed libatk-bridge2.0-0:amd64 libatk-bridge2.0-0 2.14.0-2 install ok installed libatk-wrapper-java libatk-wrapper-java 0.30.5-1 install ok installed libatk-wrapper-java-jni:amd64 libatk-wrapper-java-jni 0.30.5-1 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.14.0-1 install ok installed libatk1.0-data libatk1.0-data 2.14.0-1 install ok installed libatlas3-base libatlas3-base 3.10.2-7 install ok installed libatm1:amd64 libatm1 1:2.5.1-1.5 install ok installed libatomic1:amd64 libatomic1 4.9.2-10+deb8u1 install ok installed libatspi2.0-0:amd64 libatspi2.0-0 2.14.0-1 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudio2:amd64 libaudio2 1.9.4-3 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.31-5 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.31-5 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.31-5 install ok installed libaxis-java libaxis-java 1.4-22 install ok installed libb-hooks-op-check-perl libb-hooks-op-check-perl 0.19-2+b1 install ok installed libbambamc0 libbambamc0 0.0.50-1 install ok installed libbamtools2.3.0 libbamtools2.3.0 2.3.0+dfsg-2 install ok installed libbareword-filehandles-perl libbareword-filehandles-perl 0.003-1+b2 install ok installed libbcprov-java libbcprov-java 1.49+dfsg-3+deb8u2 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.700-1 install ok installed libbio-perl-perl libbio-perl-perl 1.6.924-1 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.6.9-2 install ok installed libbiojava-java libbiojava-java 1:1.7.1-5 install ok installed libbiojava1.7-java libbiojava1.7-java 1:1.7.1-5 install ok installed libbit-vector-perl libbit-vector-perl 7.3-1+b2 install ok installed libblas-common libblas-common 1.2.20110419-10 install ok installed libblas3 libblas3 1.2.20110419-10 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libboost-filesystem1.55.0:amd64 libboost-filesystem1.55.0 1.55.0+dfsg-3 install ok installed libboost-iostreams1.55.0:amd64 libboost-iostreams1.55.0 1.55.0+dfsg-3 install ok installed libboost-program-options1.55.0:amd64 libboost-program-options1.55.0 1.55.0+dfsg-3 install ok installed libboost-regex1.55.0:amd64 libboost-regex1.55.0 1.55.0+dfsg-3 install ok installed libboost-serialization1.55.0:amd64 libboost-serialization1.55.0 1.55.0+dfsg-3 install ok installed libboost-system1.55.0:amd64 libboost-system1.55.0 1.55.0+dfsg-3 install ok installed libboost-thread1.55.0:amd64 libboost-thread1.55.0 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0.7.4-2 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcarp-always-perl libcarp-always-perl 0.12-1 install ok installed libcarp-clan-perl libcarp-clan-perl 6.04-1 install ok installed libcassie1 libcassie1 1.0.1+dfsg-3+b1 install ok installed libcdt5 libcdt5 2.38.0-7 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.04-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.09-1 install ok installed libcgmanager0:amd64 libcgmanager0 0.33-2+deb8u2 install ok installed libcgraph6 libcgraph6 2.38.0-7 install ok installed libcilkrts5:amd64 libcilkrts5 4.9.2-10+deb8u1 install ok installed libclass-c3-perl libclass-c3-perl 0.26-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.13-2+b1 install ok installed libclass-inspector-perl libclass-inspector-perl 1.28-1 install ok installed libclass-isa-perl libclass-isa-perl 0.36-5 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.11-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-2+b4 install ok installed libclone-perl libclone-perl 0.37-1+b1 install ok installed libcloog-isl4:amd64 libcloog-isl4 0.18.2-1+b2 install ok installed libcofoja-java libcofoja-java 1.1-r150-2 install ok installed libcolamd2.8.0:amd64 libcolamd2.8.0 1:4.2.1-3 install ok installed libcolord2:amd64 libcolord2 1.2.1-1+b2 install ok installed libcolorhug2:amd64 libcolorhug2 1.2.1-1+b2 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcommons-cli-java libcommons-cli-java 1.2-3 install ok installed libcommons-codec-java libcommons-codec-java 1.9-1 install ok installed libcommons-collections3-java libcommons-collections3-java 3.2.1-7+deb8u1 install ok installed libcommons-dbcp-java libcommons-dbcp-java 1.4-5 install ok installed libcommons-discovery-java libcommons-discovery-java 0.5-3 install ok installed libcommons-httpclient-java libcommons-httpclient-java 3.1-11+deb8u1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-2 install ok installed libcommons-lang-java libcommons-lang-java 2.6-4 install ok installed libcommons-logging-java libcommons-logging-java 1.2-1 install ok installed libcommons-math3-java libcommons-math3-java 3.3-1 install ok installed libcommons-net2-java libcommons-net2-java 2.2-2 install ok installed libcommons-parent-java libcommons-parent-java 22-2 install ok installed libcommons-pool-java libcommons-pool-java 1.6-2 install ok installed libconfig-general-perl libconfig-general-perl 2.56-1 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.76-3+b2 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.123-2 install ok installed libcpan-meta-perl libcpan-meta-perl 2.142690-1 install ok installed libcr0 libcr0 0.8.5-2.2 install ok installed libcroco3:amd64 libcroco3 0.6.8-3+b1 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-2 install ok installed libcrypt-ssleay-perl libcrypt-ssleay-perl 0.58-1+b2 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libcups2:amd64 libcups2 1.7.5-11+deb8u2 install ok installed libcupsfilters1:amd64 libcupsfilters1 1.0.61-5+deb8u3 install ok installed libcupsimage2:amd64 libcupsimage2 1.7.5-11+deb8u2 install ok installed libdata-dumper-simple-perl libdata-dumper-simple-perl 0.11-4 install ok installed libdata-optlist-perl libdata-optlist-perl 0.109-1 install ok installed libdata-section-perl libdata-section-perl 0.200006-1 install ok installed libdata-stag-perl libdata-stag-perl 0.13-1 install ok installed libdate-calc-perl libdate-calc-perl 6.3-2 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.3-2 install ok installed libdate-manip-perl libdate-manip-perl 6.47-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.8-1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdbd-mysql-perl libdbd-mysql-perl 4.028-2+deb8u2 install ok installed libdbd-pg-perl libdbd-pg-perl 3.4.2-1 install ok installed libdbd-sqlite3-perl libdbd-sqlite3-perl 1.44-1 install ok installed libdbi-perl libdbi-perl 1.631-3+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.8.22-0+deb8u1 install ok installed libdconf1:amd64 libdconf1 0.22.0-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevel-caller-perl libdevel-caller-perl 2.06-1+b2 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.13-1 install ok installed libdevel-lexalias-perl libdevel-lexalias-perl 0.05-1+b2 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.12-1 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1 install ok installed libdjvulibre-text libdjvulibre-text 3.5.25.4-4 install ok installed libdjvulibre21:amd64 libdjvulibre21 3.5.25.4-4+b1 install ok installed libdns-export100 libdns-export100 1:9.9.5.dfsg-9+deb8u15 install ok installed libdom4j-java libdom4j-java 1.6.1+dfsg.3-2 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.58-2 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.58-2 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.58-2 install ok installed libdrm2:amd64 libdrm2 2.4.58-2 install ok installed libedit2:amd64 libedit2 3.1-20140620-2 install ok installed libeigen3-dev libeigen3-dev 3.2.2-3 install ok installed libelf1:amd64 libelf1 0.159-4.2 install ok installed libelfg0:amd64 libelfg0 0.8.13-5 install ok installed libelk0 libelk0 3.99.8-2.1 install ok installed libencode-locale-perl libencode-locale-perl 1.03-1 install ok installed liberror-perl liberror-perl 0.17-1.1 install ok installed libexif12:amd64 libexif12 0.6.21-2 install ok installed libexiv2-12 libexiv2-12 0.23-1 install ok installed libexiv2-13:amd64 libexiv2-13 0.24-4.1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u4 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.1.0-6+deb8u4 install ok installed libexporter-tiny-perl libexporter-tiny-perl 0.038-2 install ok installed libfcgi-perl libfcgi-perl 0.77-1+deb8u1 install ok installed libffi5:amd64 libffi5 3.0.10-3 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.4-2 install ok installed libfile-basedir-perl libfile-basedir-perl 0.03-1 install ok installed libfile-copy-recursive-perl libfile-copy-recursive-perl 0.38-1 install ok installed libfile-desktopentry-perl libfile-desktopentry-perl 0.07-1 install ok installed libfile-homedir-perl libfile-homedir-perl 1.00-1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-mimeinfo-perl libfile-mimeinfo-perl 0.26-1 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.003-1 install ok installed libfile-which-perl libfile-which-perl 1.09-1 install ok installed libflac8:amd64 libflac8 1.3.0-3 install ok installed libfont-afm-perl libfont-afm-perl 1.20-1 install ok installed libfont-ttf-perl libfont-ttf-perl 1.04-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.2-1+b2 install ok installed libfreecontact0 libfreecontact0 1.0.21-3+b1 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u2 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-1 install ok installed libg20 libg20 0.72-5+b1 install ok installed libgcc-4.9-dev:amd64 libgcc-4.9-dev 4.9.2-10+deb8u1 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt11:amd64 libgcrypt11 1.5.0-5+deb7u4 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgd-graph-perl libgd-graph-perl 1.48-2 install ok installed libgd-perl libgd-perl 2.53-1+b1 install ok installed libgd-text-perl libgd-text-perl 0.86-9 install ok installed libgd2-xpm:amd64 libgd2-xpm 2.0.36~rc1~dfsg-6.1+deb7u2 install ok installed libgd3:amd64 libgd3 2.1.0-5+deb8u11 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-13.1 install ok installed libgdk-pixbuf2.0-0:amd64 libgdk-pixbuf2.0-0 2.31.1-2+deb8u7 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.31.1-2+deb8u7 install ok installed libgetopt-euclid-perl libgetopt-euclid-perl 0.4.5-1 install ok installed libgetopt-simple-perl libgetopt-simple-perl 1.52-4 install ok installed libgflags2 libgflags2 2.0-2.1 install ok installed libgfortran3:amd64 libgfortran3 4.9.2-10+deb8u1 install ok installed libgif4:amd64 libgif4 4.1.6-11+deb8u1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 10.3.2-1+deb8u1 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 10.3.2-1+deb8u1 install ok installed libglade2-0:amd64 libglade2-0 1:2.6.4-2 install ok installed libglapi-mesa:amd64 libglapi-mesa 10.3.2-1+deb8u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.42.1-1+b1 install ok installed libglib2.0-data libglib2.0-data 2.42.1-1 install ok installed libglpk-java libglpk-java 1.0.37-1 install ok installed libglpk36:amd64 libglpk36 4.55-1 install ok installed libglu1-mesa:amd64 libglu1-mesa 9.0.0-2 install ok installed libgmp10:amd64 libgmp10 2:6.0.0+dfsg-6 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgnutls26:amd64 libgnutls26 2.12.20-8+deb7u5 install ok installed libgomp1:amd64 libgomp1 4.9.2-10+deb8u1 install ok installed libgoogle-glog0 libgoogle-glog0 0.3.3-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libgphoto2-6:amd64 libgphoto2-6 2.5.4-1.1+b2 install ok installed libgphoto2-l10n libgphoto2-l10n 2.5.4-1.1 install ok installed libgphoto2-port10:amd64 libgphoto2-port10 2.5.4-1.1+b2 install ok installed libgpm2:amd64 libgpm2 1.20.4-6.1+b2 install ok installed libgraph-perl libgraph-perl 1:0.96-1.1 install ok installed libgraphics-colornames-perl libgraphics-colornames-perl 2.11-6 install ok installed libgraphics-colorobject-perl libgraphics-colorobject-perl 0.5.0-6 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1~deb8u1 install ok installed libgraphviz-perl libgraphviz-perl 2.16-1 install ok installed libgs9 libgs9 9.06~dfsg-2+deb8u7 install ok installed libgs9-common libgs9-common 9.06~dfsg-2+deb8u7 install ok installed libgsl0ldbl libgsl0ldbl 1.16+dfsg-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.12.1+dfsg-19+deb8u4 install ok installed libgtextutils0:amd64 libgtextutils0 0.7-2 install ok installed libgtk-3-0:amd64 libgtk-3-0 3.14.5-1+deb8u1 install ok installed libgtk-3-bin libgtk-3-bin 3.14.5-1+deb8u1 install ok installed libgtk-3-common libgtk-3-common 3.14.5-1+deb8u1 install ok installed libgtk2.0-0:amd64 libgtk2.0-0 2.24.25-3+deb8u2 install ok installed libgtk2.0-bin libgtk2.0-bin 2.24.25-3+deb8u2 install ok installed libgtk2.0-common libgtk2.0-common 2.24.25-3+deb8u2 install ok installed libgudev-1.0-0:amd64 libgudev-1.0-0 215-17+deb8u7 install ok installed libgusb2:amd64 libgusb2 0.1.6-5 install ok installed libgvc6 libgvc6 2.38.0-7 install ok installed libgvpr2 libgvpr2 2.38.0-7 install ok installed libhamcrest-java libhamcrest-java 1.3-5 install ok installed libharfbuzz-icu0:amd64 libharfbuzz-icu0 0.9.35-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 0.9.35-2 install ok installed libheap-perl libheap-perl 0.80-2 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhpdf-2.2.1 libhpdf-2.2.1 2.2.1-1.1 install ok installed libhsqldb-java libhsqldb-java 2.2.9+dfsg-4 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.11-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.71-1+b3 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.11-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-2 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.06-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libhwloc-plugins libhwloc-plugins 1.10.0-3 install ok installed libhwloc5:amd64 libhwloc5 1.10.0-3 install ok installed libibverbs1 libibverbs1 1.1.8-1.1 install ok installed libice6:amd64 libice6 2:1.0.9-1+b1 install ok installed libicu52:amd64 libicu52 52.1-8+deb8u7 install ok installed libidn11:amd64 libidn11 1.29-1+deb8u2 install ok installed libieee1284-3:amd64 libieee1284-3 0.2.11-12 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-10 install ok installed libilmbase6:amd64 libilmbase6 1.0.1-6.1 install ok installed libimport-into-perl libimport-into-perl 1.002004-1 install ok installed libindirect-perl libindirect-perl 0.33-1 install ok installed libio-all-perl libio-all-perl 0.79-1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1+b4 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.002-2+deb8u3 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libio-stringy-perl libio-stringy-perl 2.110-5 install ok installed libipc-run-perl libipc-run-perl 0.92-1+deb8u1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-3+b2 install ok installed libirs-export91 libirs-export91 1:9.9.5.dfsg-9+deb8u15 install ok installed libisc-export95 libisc-export95 1:9.9.5.dfsg-9+deb8u15 install ok installed libisccfg-export90 libisccfg-export90 1:9.9.5.dfsg-9+deb8u15 install ok installed libisl10:amd64 libisl10 0.12.2-2 install ok installed libisorelax-java libisorelax-java 20041111-8 install ok installed libitm1:amd64 libitm1 4.9.2-10+deb8u1 install ok installed libjasper1:amd64 libjasper1 1.900.1-debian1-2.4+deb8u3 install ok installed libjava-xmlbuilder-java libjava-xmlbuilder-java 0.4-2 install ok installed libjaxen-java libjaxen-java 1.1.6-1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1 install ok installed libjbig2dec0 libjbig2dec0 0.13-4~deb8u2 install ok installed libjbzip2-java libjbzip2-java 0.9.1-3 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1 install ok installed libjcommon-java libjcommon-java 1.0.16-4 install ok installed libjdom1-java libjdom1-java 1.1.3-1 install ok installed libjets3t-java libjets3t-java 0.8.1+dfsg-1 install ok installed libjgoodies-common-java libjgoodies-common-java 1.4.0-2 install ok installed libjgoodies-forms-java libjgoodies-forms-java 1.6.0-4 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.3.1-12 install ok installed libjpeg8:amd64 libjpeg8 8d-1+deb7u1 install ok installed libjs-jquery libjs-jquery 1.7.2+dfsg-3.2 install ok installed libjs-jquery-ui libjs-jquery-ui 1.10.1+dfsg-1 install ok installed libjs-underscore libjs-underscore 1.7.0~dfsg-1 install ok installed libjsch-java libjsch-java 0.1.51-1 install ok installed libjson-c2:amd64 libjson-c2 0.11-4 install ok installed libjson-glib-1.0-0:amd64 libjson-glib-1.0-0 1.0.2-1 install ok installed libjson-glib-1.0-common libjson-glib-1.0-common 1.0.2-1 install ok installed libjsoncpp0 libjsoncpp0 0.6.0~rc2-3.1 install ok installed libjzlib-java libjzlib-java 1.1.3-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.12.1+dfsg-19+deb8u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-5+b1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed libkpathsea6 libkpathsea6 2014.20140926.35254-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.12.1+dfsg-19+deb8u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.12.1+dfsg-19+deb8u4 install ok installed liblapack3 liblapack3 3.5.0-4 install ok installed liblcms1:amd64 liblcms1 1.19.dfsg2-1.2+deb7u1 install ok installed liblcms2-2:amd64 liblcms2-2 2.6-3+deb8u1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.40+dfsg-1+deb8u4 install ok installed liblensfun-data liblensfun-data 0.2.8-2 install ok installed liblensfun0 liblensfun0 0.2.8-2 install ok installed liblexical-sealrequirehints-perl liblexical-sealrequirehints-perl 0.007-1+b2 install ok installed liblist-allutils-perl liblist-allutils-perl 0.09-1 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.33-2+b1 install ok installed libllvm3.5:amd64 libllvm3.5 1:3.5-10 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblog-message-perl liblog-message-perl 0.8-1 install ok installed liblog-message-simple-perl liblog-message-simple-perl 0.10-2 install ok installed liblog4j1.2-java liblog4j1.2-java 1.2.17-5 install ok installed liblqr-1-0:amd64 liblqr-1-0 0.4.2-2 install ok installed liblsan0:amd64 liblsan0 4.9.2-10+deb8u1 install ok installed libltdl7:amd64 libltdl7 2.4.2-1.11+b1 install ok installed liblua5.1-0:amd64 liblua5.1-0 5.1.5-7.1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmagic1:amd64 libmagic1 1:5.22+15-2+deb8u4 install ok installed libmagickcore-6.q16-2:amd64 libmagickcore-6.q16-2 8:6.8.9.9-5+deb8u12 install ok installed libmagickcore-6.q16-2-extra:amd64 libmagickcore-6.q16-2-extra 8:6.8.9.9-5+deb8u12 install ok installed libmagickcore5:amd64 libmagickcore5 8:6.7.7.10-5+deb7u4 install ok installed libmagickcore5-extra:amd64 libmagickcore5-extra 8:6.7.7.10-5+deb7u4 install ok installed libmagickwand-6.q16-2:amd64 libmagickwand-6.q16-2 8:6.8.9.9-5+deb8u12 install ok installed libmagickwand5:amd64 libmagickwand5 8:6.7.7.10-5+deb7u4 install ok installed libmail-java libmail-java 1.5.2-3 install ok installed libmailtools-perl libmailtools-perl 2.13-1 install ok installed libmath-bezier-perl libmath-bezier-perl 0.01-1 install ok installed libmath-derivative-perl libmath-derivative-perl 0.01-6 install ok installed libmath-random-mt-perl libmath-random-mt-perl 1.16-1+b2 install ok installed libmath-round-perl libmath-round-perl 0.06-4 install ok installed libmath-spline-perl libmath-spline-perl 0.02-1 install ok installed libmath-tamuanova-perl libmath-tamuanova-perl 1.0.2-2+b2 install ok installed libmath-vec-perl libmath-vec-perl 1.01-2 install ok installed libmath-vecstat-perl libmath-vecstat-perl 0.08-1 install ok installed libmime-tools-perl libmime-tools-perl 5.505-1 install ok installed libmldbm-perl libmldbm-perl 2.05-1 install ok installed libmng1:amd64 libmng1 1.0.10+dfsg-3.1+b3 install ok installed libmodule-build-perl libmodule-build-perl 0.421000-2+deb8u1 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-1 install ok installed libmodule-pluggable-perl libmodule-pluggable-perl 5.1-1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.014-1 install ok installed libmodule-signature-perl libmodule-signature-perl 0.73-1+deb8u2 install ok installed libmoo-perl libmoo-perl 1.006001-1 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libmpc3:amd64 libmpc3 1.0.2-1 install ok installed libmpfr4:amd64 libmpfr4 3.1.2-2 install ok installed libmro-compat-perl libmro-compat-perl 0.12-1 install ok installed libmsv-java libmsv-java 2009.1+dfsg1-4 install ok installed libmultidimensional-perl libmultidimensional-perl 0.010-1+b2 install ok installed libmysql-java libmysql-java 5.1.42-1~deb8u1 install ok installed libmysqlclient18:amd64 libmysqlclient18 5.5.60-0+deb8u1 install ok installed libncbi6:amd64 libncbi6 6.1.20120620-8 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libnet-dbus-perl libnet-dbus-perl 1.0.0-2+b2 install ok installed libnet-http-perl libnet-http-perl 6.07-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.01-3 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.65-1+deb8u1 install ok installed libnetpbm10 libnetpbm10 2:10.0-15.2 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libnih-dbus1 libnih-dbus1 1.0.3-4.3 install ok installed libnih1 libnih1 1.0.3-4.3 install ok installed libnotify4:amd64 libnotify4 0.7.6-2 install ok installed libnspr4:amd64 libnspr4 2:4.12-1+debu8u1 install ok installed libnss3:amd64 libnss3 2:3.26-1+debu8u3 install ok installed libnuma1:amd64 libnuma1 2.0.10-1 install ok installed libogg0:amd64 libogg0 1.3.2-1 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.19-1 install ok installed libopenexr6:amd64 libopenexr6 1.6.1-8 install ok installed libopenjpeg5:amd64 libopenjpeg5 1:1.5.2-3 install ok installed libopenmpi1.6 libopenmpi1.6 1.6.5-9.1+deb8u1 install ok installed liboro-java liboro-java 2.0.8a-9 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b1 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.20.7-1 install ok installed libpackage-constants-perl libpackage-constants-perl 0.04-1 install ok installed libpadwalker-perl libpadwalker-perl 1.98-1+b1 install ok installed libpam-cap:amd64 libpam-cap 1:2.24-8 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam-systemd:amd64 libpam-systemd 215-17+deb8u7 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.36.8-3 install ok installed libpango1.0-0:amd64 libpango1.0-0 1.36.8-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.36.8-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.36.8-3 install ok installed libpangox-1.0-0:amd64 libpangox-1.0-0 0.0.2-5 install ok installed libpangoxft-1.0-0:amd64 libpangoxft-1.0-0 1.36.8-3 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu4 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu4 install ok installed libparams-classify-perl libparams-classify-perl 0.013-4+b2 install ok installed libparams-util-perl libparams-util-perl 1.07-2+b1 install ok installed libparams-validate-perl libparams-validate-perl 1.13-1+b1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967009+dfsg-1 install ok installed libpathplan4 libpathplan4 2.38.0-7 install ok installed libpciaccess0:amd64 libpciaccess0 0.13.2-3+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libpcsclite1:amd64 libpcsclite1 1.8.13-1+deb8u1 install ok installed libperl4-corelibs-perl libperl4-corelibs-perl 0.003-1 install ok installed libperl5.20 libperl5.20 5.20.2-3+deb8u11 install ok installed libperlio-gzip-perl libperlio-gzip-perl 0.18-3+b1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.32.6-3 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libpod-coverage-perl libpod-coverage-perl 0.23-1 install ok installed libpod-latex-perl libpod-latex-perl 0.61-1 install ok installed libpod-readme-perl libpod-readme-perl 0.11-1 install ok installed libpolkit-agent-1-0:amd64 libpolkit-agent-1-0 0.105-15~deb8u2 install ok installed libpolkit-backend-1-0:amd64 libpolkit-backend-1-0 0.105-15~deb8u2 install ok installed libpolkit-gobject-1-0:amd64 libpolkit-gobject-1-0 0.105-15~deb8u2 install ok installed libpoppler-qt4-4:amd64 libpoppler-qt4-4 0.26.5-2+deb8u4 install ok installed libpoppler46:amd64 libpoppler46 0.26.5-2+deb8u4 install ok installed libpopt0:amd64 libpopt0 1.16-10 install ok installed libpostscript-perl libpostscript-perl 0.06-2 install ok installed libpotrace0 libpotrace0 1.12-1+deb8u1 install ok installed libpq5:amd64 libpq5 9.4.18-0+deb8u1 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libprotobuf9:amd64 libprotobuf9 2.6.1-1 install ok installed libproxy1:amd64 libproxy1 0.4.11-4+b2 install ok installed libptexenc1 libptexenc1 2014.20140926.35254-6 install ok installed libpth20:amd64 libpth20 2.0.7-20 install ok installed libpulse0:amd64 libpulse0 5.0-13 install ok installed libpython-all-dev:amd64 libpython-all-dev 2.7.9-1 install ok installed libpython-dev:amd64 libpython-dev 2.7.9-1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.9-1 install ok installed libpython2.7:amd64 libpython2.7 2.7.9-2+deb8u1 install ok installed libpython2.7-dev:amd64 libpython2.7-dev 2.7.9-2+deb8u1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.9-2+deb8u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.9-2+deb8u1 install ok installed libqt4-xml:amd64 libqt4-xml 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libqtcore4:amd64 libqtcore4 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libqtgui4:amd64 libqtgui4 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libreadonly-perl libreadonly-perl 2.000-1 install ok installed libregexp-common-perl libregexp-common-perl 2013031301-1 install ok installed libregexp-java libregexp-java 1.5-3 install ok installed librelaxng-datatype-java librelaxng-datatype-java 1.0+ds1-3 install ok installed librest-0.7-0:amd64 librest-0.7-0 0.7.92-3 install ok installed librole-tiny-perl librole-tiny-perl 1.003004-1 install ok installed librsvg2-2:amd64 librsvg2-2 2.40.5-1+deb8u2 install ok installed librsvg2-common:amd64 librsvg2-common 2.40.5-1+deb8u2 install ok installed libruby2.1:amd64 libruby2.1 2.1.5-2+deb8u3 install ok installed libsam-java libsam-java 1.113-1 install ok installed libsane:amd64 libsane 1.0.24-8+deb8u2 install ok installed libsane-common libsane-common 1.0.24-8+deb8u2 install ok installed libsane-extras:amd64 libsane-extras 1.0.22.3 install ok installed libsane-extras-common libsane-extras-common 1.0.22.3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.26.dfsg1-13+deb8u1 install ok installed libsaxonb-java libsaxonb-java 9.1.0.8+dfsg-1 install ok installed libsctp1:amd64 libsctp1 1.0.16+dfsg-2 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libservlet2.5-java libservlet2.5-java 6.0.45+dfsg-1~deb8u1 install ok installed libset-intspan-perl libset-intspan-perl 1.19-1 install ok installed libset-scalar-perl libset-scalar-perl 1.29-1 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsndfile1:amd64 libsndfile1 1.0.25-9.1+deb8u1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.11-1 install ok installed libsoftware-license-perl libsoftware-license-perl 0.103010-3 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-1 install ok installed libsoup-gnome2.4-1:amd64 libsoup-gnome2.4-1 2.48.0-1+deb8u1 install ok installed libsoup2.4-1:amd64 libsoup2.4-1 2.48.0-1+deb8u1 install ok installed libspiffy-perl libspiffy-perl 0.41-1 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u2 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u8 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0607-1 install ok installed libstdc++-4.9-dev:amd64 libstdc++-4.9-dev 4.9.2-10+deb8u1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libstrictures-perl libstrictures-perl 1.005005-1 install ok installed libsub-exporter-perl libsub-exporter-perl 0.986-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001011-1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsub-name-perl libsub-name-perl 0.12-1 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-2 install ok installed libsvg-perl libsvg-perl 2.59-1 install ok installed libswitch-perl libswitch-perl 2.17-2 install ok installed libsynctex1 libsynctex1 2014.20140926.35254-6 install ok installed libsystemd-login0:amd64 libsystemd-login0 215-17+deb8u7 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtamuanova-0.2 libtamuanova-0.2 0.2-3 install ok installed libtask-weaken-perl libtask-weaken-perl 1.04-1 install ok installed libtasn1-3:amd64 libtasn1-3 2.13-2+deb7u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.2-3+deb8u3 install ok installed libtbb2 libtbb2 4.2~20140122-5 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.2+dfsg-2 install ok installed libtcmalloc-minimal4 libtcmalloc-minimal4 2.2.1-0.2 install ok installed libtdb1:amd64 libtdb1 1.3.6-0+deb8u1 install ok installed libterm-readkey-perl libterm-readkey-perl 2.32-1+b1 install ok installed libterm-ui-perl libterm-ui-perl 0.42-1 install ok installed libtest-pod-perl libtest-pod-perl 1.48-1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-format-perl libtext-format-perl 0.59-1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-soundex-perl libtext-soundex-perl 3.4-1+b2 install ok installed libtext-template-perl libtext-template-perl 1.46-1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libthai-data libthai-data 0.1.21-1 install ok installed libthai0:amd64 libthai0 0.1.21-1 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-1 install ok installed libtiff4:amd64 libtiff4 3.9.6-11 install ok installed libtiff5:amd64 libtiff5 4.0.3-12.3+deb8u5 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libtk8.6:amd64 libtk8.6 8.6.2-1 install ok installed libtre5:amd64 libtre5 0.8.0-4+deb8u1 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.22-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.22-1 install ok installed libtsan0:amd64 libtsan0 4.9.2-10+deb8u1 install ok installed libtxc-dxtn-s2tc0:amd64 libtxc-dxtn-s2tc0 0~git20131104-1.1 install ok installed libtype-tiny-perl libtype-tiny-perl 1.000004-1 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.010-1 install ok installed libubsan0:amd64 libubsan0 4.9.2-10+deb8u1 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libunicode-map-perl libunicode-map-perl 0.112-11+b1 install ok installed libunwind8 libunwind8 1.1-3.2 install ok installed liburi-perl liburi-perl 1.64-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libusb-1.0-0:amd64 libusb-1.0-0 2:1.0.19-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libutempter0 libutempter0 1.1.5-4 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libv4l-0:amd64 libv4l-0 1.6.0-2 install ok installed libv4lconvert0:amd64 libv4lconvert0 1.6.0-2 install ok installed libvorbis0a:amd64 libvorbis0a 1.3.4-2+deb8u1 install ok installed libvorbisenc2:amd64 libvorbisenc2 1.3.4-2+deb8u1 install ok installed libvorbisfile3:amd64 libvorbisfile3 1.3.4-2+deb8u1 install ok installed libvpx1:amd64 libvpx1 1.3.0-3+deb8u1 install ok installed libwayland-client0:amd64 libwayland-client0 1.6.0-2 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.6.0-2 install ok installed libwebp5:amd64 libwebp5 0.4.1-1.2+b2 install ok installed libwebpdemux1:amd64 libwebpdemux1 0.4.1-1.2+b2 install ok installed libwebpmux1:amd64 libwebpmux1 0.4.1-1.2+b2 install ok installed libwmf0.2-7:amd64 libwmf0.2-7 0.2.8.4-10.3+deb8u2 install ok installed libwrap0:amd64 libwrap0 7.6.q-25 install ok installed libwsdl4j-java libwsdl4j-java 1.6.3-1 install ok installed libwww-perl libwww-perl 6.08-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libwxbase3.0-0:amd64 libwxbase3.0-0 3.0.2-1+b1 install ok installed libwxgtk3.0-0:amd64 libwxgtk3.0-0 3.0.2-1+b1 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u1 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u1 install ok installed libx11-protocol-perl libx11-protocol-perl 0.56-6 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.2-3+deb8u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.12-2+b1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.10-3+b1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.10-3+b1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.10-3+b1 install ok installed libxcb-present0:amd64 libxcb-present0 1.10-3+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.10-3+b1 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.10-3+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.10-3+b1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.10-3+b1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.4-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.1.14-1+deb8u1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+b1 install ok installed libxdot4 libxdot4 2.38.0-7 install ok installed libxerces-c3.1:amd64 libxerces-c3.1 3.1.1-5.1+deb8u4 install ok installed libxerces2-java libxerces2-java 2.11.0-7 install ok installed libxext6:amd64 libxext6 2:1.3.3-1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.1-2+deb8u1 install ok installed libxft2:amd64 libxft2 2.3.2-1 install ok installed libxi6:amd64 libxi6 2:1.7.4-1+deb8u1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.3-1+b1 install ok installed libxkbcommon0:amd64 libxkbcommon0 0.4.3-2 install ok installed libxml-commons-external-java libxml-commons-external-java 1.4.01-2 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-7 install ok installed libxml-dom-perl libxml-dom-perl 1.44-1 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-1 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-5 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0116+dfsg-1+deb8u2 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.92-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.11-1 install ok installed libxml-parser-perl libxml-parser-perl 2.41-3 install ok installed libxml-perl libxml-perl 0.08-2 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.07-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.40-2 install ok installed libxml-sax-perl libxml-sax-perl 0.99+dfsg-2 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.54-1 install ok installed libxml-simple-perl libxml-simple-perl 2.20-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.48-1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.13-7 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.13-1 install ok installed libxml2:amd64 libxml2 2.9.1+dfsg1-5+deb8u6 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-1 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-1 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-1 install ok installed libxom-java libxom-java 1.2.10-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-0+deb8u1 install ok installed libxpp2-java libxpp2-java 2.1.10-7 install ok installed libxpp3-java libxpp3-java 1.1.4c-2 install ok installed libxrandr2:amd64 libxrandr2 2:1.4.2-1+deb8u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.8-1+b1 install ok installed libxshmfence1:amd64 libxshmfence1 1.1-4 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.28-2+deb8u3 install ok installed libxss1:amd64 libxss1 1:1.2.2-1 install ok installed libxt6:amd64 libxt6 1:1.1.4-1+b1 install ok installed libxtables10 libxtables10 1.4.21-2+b1 install ok installed libxtst6:amd64 libxtst6 2:1.2.2-1+deb8u1 install ok installed libxv1:amd64 libxv1 2:1.0.10-1+deb8u1 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.4-1+b1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.3-1+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.1.6-3 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.41-6 install ok installed libyaml-perl libyaml-perl 1.13-1 install ok installed libyaml-tiny-perl libyaml-tiny-perl 1.64-1 install ok installed libzzip-0-13:amd64 libzzip-0-13 0.13.62-3+deb8u1 install ok installed linux-libc-dev:amd64 linux-libc-dev 3.16.56-1+deb8u1 install ok installed lksctp-tools lksctp-tools 1.0.16+dfsg-2 install ok installed lmodern lmodern 2.004.4-5 install ok installed login login 1:4.2-3+deb8u4 install ok installed loki loki 2.4.7.4-5 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed lua-filesystem:amd64 lua-filesystem 1.6.2-3 install ok installed lua-lpeg:amd64 lua-lpeg 0.12-1 install ok installed lua-md5:amd64 lua-md5 1.2+git+1+8d87fee-1 install ok installed lynx lynx 2.8.9dev1-2+deb8u1 install ok installed lynx-cur lynx-cur 2.8.9dev1-2+deb8u1 install ok installed macs macs 2.0.9.1-1 install ok installed mafft mafft 7.205-1 install ok installed manpages manpages 3.74-1 install ok installed manpages-dev manpages-dev 3.74-1 install ok installed mapsembler2 mapsembler2 2.1.6+dfsg-1 install ok installed maq maq 0.7.1-5 install ok installed mawk mawk 1.3.3-17 install ok installed med-cloud med-cloud 2.0 install ok installed med-config med-config 2.0 install ok installed med-tasks med-tasks 2.0 install ok installed melting melting 4.3.1+dfsg-1 install ok installed menu menu 2.1.47 install ok installed mime-support mime-support 3.58 install ok installed minia minia 1.6088-1 install ok installed mipe mipe 1.1-4 install ok installed mira-assembler mira-assembler 4.0.2-1+b1 install ok installed mothur mothur 1.33.3+dfsg-2 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed muscle muscle 1:3.8.31-1 install ok installed mustang mustang 3.2.2-1 install ok installed mysql-client mysql-client 5.5.60-0+deb8u1 install ok installed mysql-client-5.5 mysql-client-5.5 5.5.60-0+deb8u1 install ok installed mysql-common mysql-common 5.5.60-0+deb8u1 install ok installed ncbi-blast+ ncbi-blast+ 2.2.29-3 install ok installed ncbi-data ncbi-data 6.1.20120620-8 install ok installed ncbi-epcr ncbi-epcr 2.3.12-1-2 install ok installed ncbi-tools-bin ncbi-tools-bin 6.1.20120620-8 install ok installed ncoils ncoils 2002-4 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed netbase netbase 5.3 install ok installed netpbm netpbm 2:10.0-15.2 install ok installed notification-daemon notification-daemon 0.7.6-2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.3-1+deb8u1 install ok installed openjdk-7-jre:amd64 openjdk-7-jre 7u181-2.6.14-1~deb8u1 install ok installed openjdk-7-jre-headless:amd64 openjdk-7-jre-headless 7u181-2.6.14-1~deb8u1 install ok installed openmpi-bin openmpi-bin 1.6.5-9.1+deb8u1 install ok installed openmpi-common openmpi-common 1.6.5-9.1+deb8u1 install ok installed openssl openssl 1.0.1t-1+deb8u8 install ok installed parsinsert parsinsert 1.04-1 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl perl 5.20.2-3+deb8u11 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed perl-doc perl-doc 5.20.2-3+deb8u11 install ok installed perl-modules perl-modules 5.20.2-3+deb8u11 install ok installed perl-tk perl-tk 1:804.032-3+b3 install ok installed perm perm 0.4.0-1 install ok installed phyml phyml 2:20120412-2 install ok installed phyutility phyutility 2.7.3-1 install ok installed picard-tools picard-tools 1.113-1 install ok installed pkg-config pkg-config 0.28-1 install ok installed plink plink 1.07-3 install ok installed poa poa 2.0+20060928-3 install ok installed policykit-1 policykit-1 0.105-15~deb8u2 install ok installed poppler-data poppler-data 0.4.7-1 install ok installed prank prank 0.0.140110-1 install ok installed prerex prerex 6.5.3-1 install ok installed preview-latex-style preview-latex-style 11.87-3+deb8u1 install ok installed primer3 primer3 2.3.6-1 install ok installed probalign probalign 1.4-3 install ok installed probcons probcons 1.12-9 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed proda proda 1.0-8 install ok installed prosper prosper 1.00.4+cvs.2007.05.01-4 install ok installed ps2eps ps2eps 1.68+binaryfree-1 install ok installed psmisc psmisc 22.21-2 install ok installed python python 2.7.9-1 install ok installed python-all python-all 2.7.9-1 install ok installed python-all-dev python-all-dev 2.7.9-1 install ok installed python-biopython python-biopython 1.64+dfsg-5 install ok installed python-biopython-doc python-biopython-doc 1.64+dfsg-5 install ok installed python-cairo python-cairo 1.8.8-1+b2 install ok installed python-cogent python-cogent 1.5.3-2 install ok installed python-dateutil python-dateutil 2.2-2 install ok installed python-decorator python-decorator 3.4.0-2 install ok installed python-dev python-dev 2.7.9-1 install ok installed python-glade2 python-glade2 2.24.0-4 install ok installed python-gmpy python-gmpy 1.15-1 install ok installed python-gobject-2 python-gobject-2 2.28.6-12+b1 install ok installed python-gtk2 python-gtk2 2.24.0-4 install ok installed python-htseq python-htseq 0.5.4p3-2 install ok installed python-imaging python-imaging 2.6.1-2+deb8u3 install ok installed python-matplotlib python-matplotlib 1.4.2-3.1 install ok installed python-matplotlib-data python-matplotlib-data 1.4.2-3.1 install ok installed python-minimal python-minimal 2.7.9-1 install ok installed python-mock python-mock 1.0.1-3 install ok installed python-mpmath python-mpmath 0.19-1 install ok installed python-nose python-nose 1.3.4-1 install ok installed python-numpy python-numpy 1:1.8.2-2 install ok installed python-pexpect python-pexpect 3.2-1 install ok installed python-pil:amd64 python-pil 2.6.1-2+deb8u3 install ok installed python-pkg-resources python-pkg-resources 5.5.1-1 install ok installed python-pyglet python-pyglet 1.1.4.dfsg-2 install ok installed python-pyparsing python-pyparsing 2.0.3+dfsg1-1 install ok installed python-pyrex python-pyrex 0.9.8.5-2.1 install ok installed python-pysam python-pysam 0.7.7-1 install ok installed python-renderpm:amd64 python-renderpm 3.1.8-3+deb8u1 install ok installed python-reportlab python-reportlab 3.1.8-3+deb8u1 install ok installed python-reportlab-accel:amd64 python-reportlab-accel 3.1.8-3+deb8u1 install ok installed python-scipy python-scipy 0.14.0-2 install ok installed python-simplegeneric python-simplegeneric 0.8.1-1 install ok installed python-six python-six 1.8.0-1 install ok installed python-support python-support 1.0.15 install ok installed python-sympy python-sympy 0.7.5-3 install ok installed python-tk python-tk 2.7.8-2+b1 install ok installed python-tz python-tz 2012c+dfsg-0.1 install ok installed python-wxgtk3.0 python-wxgtk3.0 3.0.1.1+dfsg-2 install ok installed python-wxversion python-wxversion 3.0.1.1+dfsg-2 install ok installed python2.6 python2.6 2.6.8-1.1 install ok installed python2.6-minimal python2.6-minimal 2.6.8-1.1 install ok installed python2.7 python2.7 2.7.9-2+deb8u1 install ok installed python2.7-dev python2.7-dev 2.7.9-2+deb8u1 install ok installed python2.7-minimal python2.7-minimal 2.7.9-2+deb8u1 install ok installed qtcore4-l10n qtcore4-l10n 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed raster3d raster3d 3.0-3-1 install ok installed readline-common readline-common 6.3-8 install ok installed rename rename 0.20-3 install ok installed rnahybrid rnahybrid 2.1.1-2 install ok installed rtax rtax 0.984-2 install ok installed ruby ruby 1:2.1.5+deb8u2 install ok installed ruby2.1 ruby2.1 2.1.5-2+deb8u3 install ok installed rubygems-integration rubygems-integration 1.8 install ok installed samtools samtools 0.1.19-1 install ok installed sane-utils sane-utils 1.0.24-8+deb8u2 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed seqan-apps seqan-apps 1.4.1+dfsg-2 install ok installed sgml-base sgml-base 1.26+nmu4 install ok installed shared-mime-info shared-mime-info 1.3-1 install ok installed sim4 sim4 0.0.20121010-1 install ok installed smalt smalt 0.7.6-4 install ok installed ssake ssake 3.8.2-1 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-shim systemd-shim 9-1 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit sysvinit 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed t-coffee t-coffee 11.00.8cbe486-1 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tasksel tasksel 3.31+deb8u1 install ok installed tasksel-data tasksel-data 3.31+deb8u1 install ok installed tcl tcl 8.6.0+8 install ok installed tcl8.6 tcl8.6 8.6.2+dfsg-2 install ok installed tcpd tcpd 7.6.q-25 install ok installed tex-common tex-common 5.03 install ok installed tex-gyre tex-gyre 20140520-1 install ok installed texlive-base texlive-base 2014.20141024-2+deb8u1 install ok installed texlive-binaries texlive-binaries 2014.20140926.35254-6 install ok installed texlive-extra-utils texlive-extra-utils 2014.20141024-1 install ok installed texlive-font-utils texlive-font-utils 2014.20141024-1 install ok installed texlive-fonts-extra texlive-fonts-extra 2014.20141024-1 install ok installed texlive-fonts-extra-doc texlive-fonts-extra-doc 2014.20141024-1 install ok installed texlive-fonts-recommended texlive-fonts-recommended 2014.20141024-2+deb8u1 install ok installed texlive-fonts-recommended-doc texlive-fonts-recommended-doc 2014.20141024-2+deb8u1 install ok installed texlive-generic-recommended texlive-generic-recommended 2014.20141024-2+deb8u1 install ok installed texlive-latex-base texlive-latex-base 2014.20141024-2+deb8u1 install ok installed texlive-latex-base-doc texlive-latex-base-doc 2014.20141024-2+deb8u1 install ok installed texlive-latex-extra texlive-latex-extra 2014.20141024-1 install ok installed texlive-latex-extra-doc texlive-latex-extra-doc 2014.20141024-1 install ok installed texlive-latex-recommended texlive-latex-recommended 2014.20141024-2+deb8u1 install ok installed texlive-latex-recommended-doc texlive-latex-recommended-doc 2014.20141024-2+deb8u1 install ok installed texlive-pictures texlive-pictures 2014.20141024-2+deb8u1 install ok installed texlive-pictures-doc texlive-pictures-doc 2014.20141024-2+deb8u1 install ok installed texlive-pstricks texlive-pstricks 2014.20141024-1 install ok installed texlive-pstricks-doc texlive-pstricks-doc 2014.20141024-1 install ok installed tigr-glimmer tigr-glimmer 3.02-3 install ok installed tipa tipa 2:1.3-20 install ok installed tk tk 8.6.0+8 install ok installed tk8.6 tk8.6 8.6.2-1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-1 install ok installed tm-align tm-align 20140601+dfsg-1 install ok installed tophat tophat 2.0.13+dfsg-1 install ok installed ttf-adf-accanthis ttf-adf-accanthis 0.20090423-2 install ok installed ttf-adf-gillius ttf-adf-gillius 0.20090423-2 install ok installed ttf-adf-universalis ttf-adf-universalis 0.20090423-2 install ok installed ttf-dejavu-core ttf-dejavu-core 2.34-1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed tzdata-java tzdata-java 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed ufraw-batch ufraw-batch 0.20-2+deb8u1 install ok installed update-inetd update-inetd 4.43 install ok installed util-linux util-linux 2.25.2-6 install ok installed velvet velvet 1.2.10+dfsg1-1 install ok installed vprerex vprerex 6.5.3-1 install ok installed wise wise 2.4.1-17 install ok installed wise-data wise-data 2.4.1-17 install ok installed wwwconfig-common wwwconfig-common 0.2.2 install ok installed x11-common x11-common 1:7.7+7 install ok installed x11-utils x11-utils 7.7+2 install ok installed x11-xserver-utils x11-xserver-utils 7.7+3+b1 install ok installed xbitmaps xbitmaps 1.1.1-2 install ok installed xdg-user-dirs xdg-user-dirs 0.15-2 install ok installed xdg-utils xdg-utils 1.1.0~rc1+git20111210-7.4+deb8u1 install ok installed xkb-data xkb-data 2.12-1 install ok installed xml-core xml-core 0.13+nmu2 install ok installed xterm xterm 312-2 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2+b3 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 10m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 10m40.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', '-ac', '--ignore-obsolete'] 11m14.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', '-ac', '--ignore-obsolete'] 11m14.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 11m14.5s DUMP: 0.15.1 11m14.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 11m14.5s INFO: Running adequate version 0.15.1 now. 11m14.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'med-cloud'] 11m14.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'med-cloud'] 11m14.7s INFO: Running scripts pre_remove 11m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 11m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 11m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 11m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 11m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 12m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 12m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 12m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 12m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 12m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 12m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_remove_exceptions'] 12m45.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/pre_remove_exceptions'] 12m45.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', 'remove', 'java-common', 'texlive-latex-base', 'texlive-pictures', 'libv4lconvert0:amd64', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libbytecode-java', 'python-scipy', 'python-dateutil', 'libv4l-0:amd64', 'libyaml-perl', 'texlive-latex-base-doc', 'libelf1:amd64', 'emboss', 'libjzlib-java', 'libpangoxft-1.0-0:amd64', 'cython', 'libopenexr6:amd64', 'libmodule-implementation-perl', 'libargtable2-0', 'libtiff5:amd64', 'libmagickcore5-extra:amd64', 'fonts-gfs-complutum', 'libclass-c3-perl', 'libutempter0', 'libcairo-gobject2:amd64', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libdom4j-java', 'libmro-compat-perl', 'liblsan0:amd64', 'libxdamage1:amd64', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'dmidecode', 'libpq5:amd64', 'libboost-system1.55.0:amd64', 'libtext-template-perl', 'ufraw-batch', 'cgmanager', 'liblwp-protocol-https-perl', 'libmath-vecstat-perl', 'libfile-listing-perl', 'libgd-graph-perl', 'smalt', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'fonts-gfs-didot', 'libatk1.0-0:amd64', 'fonts-oflb-asana-math', 'libmath-spline-perl', 'libgflags2', 'libsane:amd64', 'libzzip-0-13:amd64', 'fonts-lobster', 'libxml-sax-perl', 'libasan1:amd64', 'dialign-tx', 'libstrictures-perl', 'libmng1:amd64', 'libxml-commons-external-java', 'dialign', 'libsub-install-perl', 'imagemagick-6.q16', 'libpod-coverage-perl', 'libclone-perl', 'libpopt0:amd64', 'libhtml-tableextract-perl', 'libdrm2:amd64', 'libdbd-pg-perl', 'libcommons-net2-java', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libcommons-lang-java', 'libpython-dev:amd64', 'lua-md5:amd64', 'tipa', 'libboost-serialization1.55.0:amd64', 'libdns-export100', 'libgmp10:amd64', 'policykit-1', 'libtxc-dxtn-s2tc0:amd64', 'libgd3:amd64', 'libgsl0ldbl', 'libhtml-format-perl', 'last-align', 'mafft', 'libossp-uuid-perl', 'libfreecontact0', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'python2.7', 'libasyncns0:amd64', 'junit4', 'libjbzip2-java', 'libipc-sharelite-perl', 'libfont-ttf-perl', 'libpolkit-agent-1-0:amd64', 'libgl1-mesa-glx:amd64', 'libmsv-java', 'python-minimal', 'manpages-dev', 'fonts-texgyre', 'libxft2:amd64', 'autogrid', 'libatomic1:amd64', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'liblcms1:amd64', 'fonts-junicode', 'picard-tools', 'python-pysam', 'bioperl-run', 'libgudev-1.0-0:amd64', 'libhtml-tagset-perl', 'libyaml-tiny-perl', 'clearcut', 'genometools', 'plink', 'libapr1:amd64', 'ampliconnoise', 'altree', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'liboro-java', 'texlive-binaries', 'python2.6-minimal', 'libset-intspan-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'init-system-helpers', 'libclass-isa-perl', 'x11-xserver-utils', 'libcupsimage2:amd64', 'libxpp2-java', 'perm', 'libdigest-perl-md5-perl', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'libgtk2.0-0:amd64', 'dconf-service', 'libdb5.1:amd64', 'xkb-data', 'libtasn1-6:amd64', 'discosnp', 'libnet-smtp-ssl-perl', 'python-cairo', 'libfreezethaw-perl', 'libhamcrest-java', 'libnspr4:amd64', 'libfile-slurp-tiny-perl', 'gcc-4.9', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'fonts-crosextra-carlito', 'libwww-robotrules-perl', 'libxcb-dri3-0:amd64', 'libkrb5-3:amd64', 'libstdc++-4.9-dev:amd64', 'libjpeg62-turbo:amd64', 'libmail-java', 'libtsan0:amd64', 'libarchive-extract-perl', 'disulfinder', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'ncbi-tools-bin', 'libpython2.7-minimal:amd64', 'proda', 'libpixman-1-0:amd64', 'gsettings-desktop-schemas', 'bedtools', 'openjdk-7-jre:amd64', 'python-glade2', 'liblapack3', 'gcc', 'primer3', 'python-pexpect', 'texlive-latex-recommended', 'fastx-toolkit', 'libxxf86dga1:amd64', 'libcloog-isl4:amd64', 'fonts-lmodern', 'libjasper1:amd64', 'libmodule-signature-perl', 'liburi-perl', 'libmodule-runtime-perl', 'maq', 'libpcsclite1:amd64', 'libxxf86vm1:amd64', 'libasound2-data', 'libtbb2', 'libxslt1.1:amd64', 'mothur', 'libgphoto2-port10:amd64', 'libsane-common', 'liblensfun-data', 'texlive-fonts-recommended', 'libpotrace0', 'libgraphics-colorobject-perl', 'libmultidimensional-perl', 'libwmf0.2-7:amd64', 'libwrap0:amd64', 'libidn11:amd64', 'fastlink', 'aevol', 'libxml-libxslt-perl', 'fonts-comfortaa', 'med-config', 'fonts-liberation', 'libkrb5support0:amd64', 'libmath-vec-perl', 'fonts-sil-gentium-basic', 'libptexenc1', 'python-biopython', 'python-matplotlib', 'libgdk-pixbuf2.0-0:amd64', 'systemd-shim', 'libnet-ssleay-perl', 'fitgcp', 'libglpk36:amd64', 'biomaj', 'fonts-dejavu-core', 'python2.7-dev', 'libfreetype6:amd64', 'libjson-glib-1.0-common', 'python-support', 'libjs-jquery', 'fonts-freefont-ttf', 'libgphoto2-l10n', 'fonts-crosextra-caladea', 'libatk-wrapper-java', 'libcilkrts5:amd64', 'libbio-asn1-entrezgene-perl', 'texlive-latex-extra-doc', 'datamash', 'libssl1.0.0:amd64', 'libnettle4:amd64', 'python-gmpy', 'ocl-icd-libopencl1:amd64', 'concavity', 'libcommons-math3-java', 'ipython', 'libmysql-java', 'libjcommon-java', 'prosper', 'libmpc3:amd64', 'python', 'libieee1284-3:amd64', 'libio-html-perl', 'libpython2.7:amd64', 'autodock', 'libgtk2.0-common', 'libpoppler-qt4-4:amd64', 'glpk-utils', 'libp11-kit0:amd64', 'libyaml-libyaml-perl', 'libblas3', 'python-pyrex', 'libservlet2.5-java', 'libcgmanager0:amd64', 'rnahybrid', 'libcr0', 'libthai0:amd64', 'med-tasks', 'python-tk', 'python-wxversion', 'libexiv2-13:amd64', 'libxerces2-java', 'libcommons-dbcp-java', 'openmpi-common', 'texlive-pictures-doc', 'ssake', 'hmmer', 'libk5crypto3:amd64', 'python-tz', 'dconf-gsettings-backend:amd64', 'fonts-freefont-otf', 'libdconf1:amd64', 'libwxbase3.0-0:amd64', 'libmagic1:amd64', 'python-imaging', 'libfile-homedir-perl', 'libcommons-jexl2-java', 'libjdom1-java', 'blt', 'libmath-derivative-perl', 'libdrm-nouveau2:amd64', 'fonts-cmu', 'libxml-sax-base-perl', 'liblog4j1.2-java', 'fonts-circos-symbols', 'libharfbuzz-icu0:amd64', 'fonts-cabin', 'libcommons-parent-java', 'poppler-data', 'dvipng', 'openmpi-bin', 'libgraph-perl', 'wwwconfig-common', 'at-spi2-core', 'fonts-dejavu-extra', 'libcpan-meta-perl', 'cd-hit', 'libjsch-java', 'idba', 'adwaita-icon-theme', 'libwebpdemux1:amd64', 'dialign-tx-data', 'liblensfun0', 'libnotify4:amd64', 'libilmbase6:amd64', 'libclass-inspector-perl', 'libvorbis0a:amd64', 'libboost-thread1.55.0:amd64', 'libmagickcore5:amd64', 'openssl', 'seqan-apps', 'fontconfig-config', 'libxinerama1:amd64', 'libconfig-general-perl', 'fonts-gfs-artemisia', 'cain', 'libisorelax-java', 'libio-socket-ssl-perl', 'libgoogle-glog0', 'libgcc-4.9-dev:amd64', 'libhwloc-plugins', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libgraphics-colornames-perl', 'glib-networking:amd64', 'libmysqlclient18:amd64', 'libgusb2:amd64', 'libdata-section-perl', 'cpp-4.9', 'libxml-simple-perl', 'bamtools', 'libgtk2.0-bin', 'prank', 'libalgorithm-diff-xs-perl', 'libgetopt-simple-perl', 'tasksel-data', 'lua-lpeg:amd64', 'mira-assembler', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'libxss1:amd64', 'bowtie2', 'libgraphviz-perl', 'python-mock', 'libtcl8.6:amd64', 'mapsembler2', 'libnss3:amd64', 'texlive-latex-extra', 'libnetpbm10', 'libhttp-cookies-perl', 'libfcgi-perl', 'python-simplegeneric', 'libmodule-pluggable-perl', 'libgtk-3-0:amd64', 'python-renderpm:amd64', 'python-matplotlib-data', 'ncbi-blast+', 'default-jre-headless', 'libncbi6:amd64', 'libatk-wrapper-java-jni:amd64', 'libwebp5:amd64', 'libgvpr2', 'libqtgui4:amd64', 'alien-hunter', 'phyml', 'tophat', 'clustalo', 'libproxy1:amd64', 'libdate-calc-perl', 'hicolor-icon-theme', 'libboost-iostreams1.55.0:amd64', 'libglade2-0:amd64', 'ant', 'loki', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'tk8.6', 'texlive-fonts-extra', 'libdrm-radeon1:amd64', 'libjcode-pm-perl', 'libhsqldb-java', 'rtax', 'libimport-into-perl', 'libpathplan4', 'libwayland-cursor0:amd64', 'libparse-recdescent-perl', 'lua-filesystem:amd64', 'libpadwalker-perl', 'libnet-http-perl', 'texlive-font-utils', 'ncbi-epcr', 'python-mpmath', 'libboost-regex1.55.0:amd64', 'libatk1.0-data', 'macs', 'libisccfg-export90', 'libperl4-corelibs-perl', 'libcanberra-gtk3-0:amd64', 'sane-utils', 'iproute2', 'libatspi2.0-0:amd64', 'libhwloc5:amd64', 'krb5-locales', 'python-reportlab-accel:amd64', 'exonerate', 'libexif12:amd64', 'libio-all-perl', 'libtamuanova-0.2', 'libjsoncpp0', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'libgdk-pixbuf2.0-common', 'amap-align', 'libnuma1:amd64', 'libmagickwand5:amd64', 'ttf-adf-universalis', 'libsvg-graph-perl', 'linux-libc-dev:amd64', 'libparams-util-perl', 'fonts-linuxlibertine', 'libdata-dumper-simple-perl', 'libxcb-shape0:amd64', 'colord', 'libcolord2:amd64', 'fastqc', 'libcofoja-java', 'texlive-fonts-recommended-doc', 'libsub-exporter-perl', 'biosquid', 'iproute', 'mysql-common', 'python-nose', 'libterm-ui-perl', 'freecontact', 'libsasl2-modules:amd64', 'liblog-message-perl', 'libxml-dom-perl', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'menu', 'libaxis-java', 'libdrm-intel1:amd64', 'libgdbm3:amd64', 'fontconfig', 'libcanberra-gtk3-module:amd64', 'libace-perl', 'libxml-sax-expat-perl', 'fonts-font-awesome', 'python-gobject-2', 'infernal', 'libclass-c3-xs-perl', 'libpciaccess0:amd64', 'flexbar', 'ncoils', 'libtk8.6:amd64', 'libalgorithm-c3-perl', 'mysql-client-5.5', 'clustalw', 'libglib2.0-0:amd64', 'libcommons-collections3-java', 'lksctp-tools', 'graphviz', 'libxext6:amd64', 'libusb-1.0-0:amd64', 'libbsd0:amd64', 'libfftw3-double3:amd64', 'libxmuu1:amd64', 'libmagickwand-6.q16-2:amd64', 'libart-2.0-2:amd64', 'libxml-namespacesupport-perl', 'libfile-mimeinfo-perl', 'sgml-base', 'libcommons-httpclient-java', 'libcommons-logging-java', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'autodock-vina', 'libfile-basedir-perl', 'fonts-gfs-olga', 'tex-common', 'libxerces-c3.1:amd64', 'libmath-round-perl', 'libgtextutils0:amd64', 'gsfonts', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'texlive-extra-utils', 'libllvm3.5:amd64', 'libjpeg8:amd64', 'libqt4-xml:amd64', 'libmath-random-mt-perl', 'python-htseq', 'libjson-glib-1.0-0:amd64', 'python-biopython-doc', 'libbamtools2.3.0', 'libtype-tiny-xs-perl', 'emboss-lib', 'python-pyglet', 'libswitch-perl', 'anfo', 'libpod-readme-perl', 'libsaxonb-java', 'blast2', 'libpolkit-backend-1-0:amd64', 'g++', 'libgif4:amd64', 'libelfg0:amd64', 'libio-sessiondata-perl', 'ant-contrib', 'libdevel-symdump-perl', 'libparams-validate-perl', 'qtcore4-l10n', 'xdg-utils', 'libopenjpeg5:amd64', 'libhtml-parser-perl', 'imagemagick', 'glib-networking-common', 'libthai-data', 'libhttp-message-perl', 'wise-data', 'libdata-stag-perl', 'libdate-manip-perl', 'python2.6', 'libgnutls-deb0-28:amd64', 'libheap-perl', 'libflac8:amd64', 'dnaclust', 'libpangox-1.0-0:amd64', 'mime-support', 'libicu52:amd64', 'libpango1.0-0:amd64', 'cain-examples', 'libgtk-3-bin', 'libjs-jquery-ui', 'python-gtk2', 'libcanberra0:amd64', 'libitm1:amd64', 'ncbi-data', 'libaudio2:amd64', 'ps2eps', 'libwebpmux1:amd64', 'circos-tools', 'perl-tk', 'binutils', 'libbit-vector-perl', 'libdatrie1:amd64', 'libxcb-present0:amd64', 'libx11-data', 'libg20', 'cassiopee', 'openjdk-7-jre-headless:amd64', 'python-wxgtk3.0', 'libglapi-mesa:amd64', 'libmath-bezier-perl', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libsam-java', 'libfontconfig1:amd64', 'libgphoto2-6:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libxrandr2:amd64', 'libdevel-globaldestruction-perl', 'libatlas3-base', 'libcommons-codec-java', 'libamd2.3.1:amd64', 'libhttp-negotiate-perl', 'glib-networking-services', 'libtcmalloc-minimal4', 'libblas-common', 'libmpfr4:amd64', 'lmodern', 'libmagickcore-6.q16-2:amd64', 'libpaper-utils', 'libxcb-glx0:amd64', 'libpod-latex-perl', 'prerex', 'libwxgtk3.0-0:amd64', 'libipc-run-perl', 'python-numpy', 'libhtml-form-perl', 'libreadonly-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'sim4', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxt6:amd64', 'kalign', 'libffi6:amd64', 'libijs-0.35:amd64', 'fastdnaml', 'libsane-extras:amd64', 'netpbm', 'python-all', 'libpth20:amd64', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'libqtcore4:amd64', 'rename', 'libsub-exporter-progressive-perl', 'vprerex', 'texlive-base', 'libubsan0:amd64', 'libglpk-java', 'libffi5:amd64', 'libeigen3-dev', 'libgl1-mesa-dri:amd64', 'libxml-xpath-perl', 'libkpathsea6', 'libindirect-perl', 'libsctp1:amd64', 'libxml-regexp-perl', 'libharfbuzz0b:amd64', 'samtools', 'libxtables10', 'grinder', 'libcommons-discovery-java', 'probalign', 'python-decorator', 'libjets3t-java', 'poa', 'libboost-filesystem1.55.0:amd64', 'fonts-gfs-solomos', 'libio-pty-perl', 'tex-gyre', 'libgvc6', 'libpango-1.0-0:amd64', 'libcrypt-rc4-perl', 'libjs-underscore', 'libcgraph6', 'libx11-xcb1:amd64', 'libibverbs1', 'libsasl2-modules-db:amd64', 'arden', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'manpages', 'libsoup-gnome2.4-1:amd64', 'libirs-export91', 'libxpm4:amd64', 'tk8.6-blt2.5', 'javascript-common', 'libgtk-3-common', 'liblist-moreutils-perl', 'circos', 'libwsdl4j-java', 'libgetopt-euclid-perl', 'libhttp-date-perl', 'python2.7-minimal', 'preview-latex-style', 'mipe', 'libcups2:amd64', 'libregexp-java', 'librsvg2-2:amd64', 'muscle', 'libexporter-tiny-perl', 'libpoppler46:amd64', 'python-all-dev', 'laptop-detect', 'librsvg2-common:amd64', 'libwayland-client0:amd64', 'texlive-pstricks-doc', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'tcl', 'libmailtools-perl', 'fonts-gfs-neohellenic', 't-coffee', 'clonalframe', 'libtext-format-perl', 'kissplice', 'librelaxng-datatype-java', 'libunwind8', 'gasic', 'libtiff4:amd64', 'libmodule-build-perl', 'libpulse0:amd64', 'libsm6:amd64', 'libnih1', 'libxom-java', 'texlive-generic-recommended', 'libxcb1:amd64', 'fonts-lato', 'libc6-dev:amd64', 'raster3d', 'libtype-tiny-perl', 'ttf-adf-accanthis', 'libxml-sax-writer-perl', 'libdjvulibre-text', 'fonts-ebgaramond-extra', 'libbareword-filehandles-perl', 'xterm', 'libsoftware-license-perl', 'libapache2-mod-perl2', 'libjgoodies-forms-java', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'libterm-readkey-perl', 'libxpp3-java', 'python-pkg-resources', 'libcolorhug2:amd64', 'tcl8.6', 'apache2-bin', 'melting', 'libsystemd-login0:amd64', 'libedit2:amd64', 'parsinsert', 'libgd-text-perl', 'g++-4.9', 'libcolamd2.8.0:amd64', 'xbitmaps', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'libelk0', 'shared-mime-info', 'libxml2:amd64', 'libbambamc0', 'libsoap-lite-perl', 'libtdb1:amd64', 'libxi6:amd64', 'libxcb-shm0:amd64', 'libxml-filter-buffertext-perl', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libtree-dagnode-perl', 'libalgorithm-munkres-perl', 'libxml-writer-perl', 'mustang', 'libsynctex1', 'fonts-stix', 'cain-solvers', 'libgomp1:amd64', 'ant-optional', 'giira', 'libpython-all-dev:amd64', 'libsndfile1:amd64', 'libfontenc1:amd64', 'libprotobuf9:amd64', 'libxtst6:amd64', 'libperl5.20', 'libparams-classify-perl', 'phyutility', 'libsqlite3-0:amd64', 'fonts-inconsolata', 'blends-common', 'libcroco3:amd64', 'libxml-twig-perl', 'bc', 'libjson-c2:amd64', 'libxdmcp6:amd64', 'libexiv2-12', 'libcommons-pool-java', 'tasksel', 'libasound2:amd64', 'libxkbcommon0:amd64', 'fonts-sil-gentium', 'libcgi-fast-perl', 'python-reportlab', 'libfile-which-perl', 'probcons', 'libxml-parser-perl', 'libcommons-cli-java', 'libxcomposite1:amd64', 'imagemagick-common', 'fonts-ebgaramond', 'libjbig2dec0', 'ca-certificates-java', 'libsoup2.4-1:amd64', 'libregexp-common-perl', 'colord-data', 'pkg-config', 'liblqr-1-0:amd64', 'libgs9', 'libatk-bridge2.0-0:amd64', 'libapache-pom-java', 'libxml-perl', 'libpostscript-perl', 'tcpd', 'libpython2.7-dev:amd64', 'libsane-extras-common', 'genometools-common', 'xml-core', 'libtie-ixhash-perl', 'libfile-copy-recursive-perl', 'perl', 'libatm1:amd64', 'fonts-lyx', 'libxv1:amd64', 'librest-0.7-0:amd64', 'libxshmfence1:amd64', 'libhttp-daemon-perl', 'notification-daemon', 'ruby2.1', 'x11-common', 'libfile-desktopentry-perl', 'libperlio-gzip-perl', 'liblua5.1-0:amd64', 'netbase', 'update-inetd', 'libbcprov-java', 'libxrender1:amd64', 'python-sympy', 'libxaw7:amd64', 'libjbig0:amd64', 'libbio-perl-run-perl', 'texlive-pstricks', 'libxml-commons-resolver1.1-java', 'bwa', 'libtask-weaken-perl', 'python-cogent', 'librole-tiny-perl', 'cdbfasta', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'python-six', 'libbiojava1.7-java', 'libdjvulibre21:amd64', 'libnet-dbus-perl', 'python-pil:amd64', 'libxcursor1:amd64', 'libgd-perl', 'libbiojava-java', 'libpolkit-gobject-1-0:amd64', 'libio-string-perl', 'tigr-glimmer', 'boxshade', 'libxau6:amd64', 'libcassie1', 'libclass-method-modifiers-perl', 'libmath-tamuanova-perl', 'x11-utils', 'libjava-xmlbuilder-java', 'libmagickcore-6.q16-2-extra:amd64', 'tk', 'ifupdown', 'libexpat1-dev:amd64', 'python-pyparsing', 'libunicode-map-perl', 'libopenmpi1.6', 'libaprutil1:amd64', 'texlive-latex-recommended-doc', 'libxcb-sync1:amd64', 'texlive-fonts-extra-doc', 'fonts-lobstertwo', 'libjaxen-java', 'file', 'ttf-adf-gillius', 'liblist-allutils-perl', 'filo', 'libgfortran3:amd64', 'python-dev', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'libspiffy-perl', 'libnih-dbus1', 'libx11-protocol-perl', 'default-jre', 'libtest-pod-perl', 'libxfixes3:amd64', 'minia', 'emboss-data', 'libbsd-resource-perl', 'libtimedate-perl', 'libwww-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'mysql-client', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libalgorithm-diff-perl', 'libvorbisenc2:amd64', 'libxcb-dri2-0:amd64', 'fasttree', 'libvorbisfile3:amd64', 'libbio-perl-perl', 'acedb-other', 'libsvg-perl', 'libboost-program-options1.55.0:amd64', 'libdevel-caller-perl', 'libtre5:amd64', 'velvet', 'libquadmath0:amd64', 'aragorn', 'libdbd-mysql-perl', 'libsort-naturally-perl', 'libisl10:amd64', 'disulfinder-data', 'libset-scalar-perl', 'libogg0:amd64', 'libyaml-0-2:amd64', 'libsasl2-2:amd64', 'lynx', 'libcdt5', 'libcarp-always-perl', 'libjgoodies-common-java', 'libanfo0', 'libc-dev-bin', 'cpp', 'tzdata-java', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl', 'dssp', 'med-cloud'] 13m58.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: acedb-other adwaita-icon-theme aevol alien-hunter altree amap-align ampliconnoise anfo ant ant-contrib ant-optional apache2-bin aragorn arden at-spi2-core autodock autodock-vina autogrid bamtools bc bedtools binutils biomaj bioperl bioperl-run biosquid blast2 blends-common blt bowtie bowtie2 boxshade bwa ca-certificates ca-certificates-java cain cain-examples cain-solvers cassiopee cd-hit cdbfasta cgmanager circos circos-tools clearcut clonalframe clustalo clustalw colord colord-data concavity cpp cpp-4.9 cython datamash dconf-gsettings-backend dconf-service default-jre default-jre-headless dialign dialign-tx dialign-tx-data discosnp disulfinder disulfinder-data dmidecode dnaclust dssp dvipng emboss emboss-data emboss-lib exonerate fastdnaml fastlink fastqc fasttree fastx-toolkit file filo fitgcp flexbar fontconfig fontconfig-config fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-droid fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-oflb-asana-math fonts-sil-gentium fonts-sil-gentium-basic fonts-stix fonts-texgyre freecontact g++ g++-4.9 gasic gcc gcc-4.9 genometools genometools-common ghostscript giira glib-networking glib-networking-common glib-networking-services glpk-utils graphviz grinder gsettings-desktop-schemas gsfonts hicolor-icon-theme hmmer idba ifupdown imagemagick imagemagick-6.q16 imagemagick-common infernal init-system-helpers iproute iproute2 ipython isc-dhcp-client isc-dhcp-common java-common javascript-common junit4 kalign kissplice krb5-locales laptop-detect last-align libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libamd2.3.1 libanfo0 libapache-dbi-perl libapache-pom-java libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-extract-perl libargtable2-0 libarray-compare-perl libart-2.0-2 libasan1 libasound2 libasound2-data libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatlas3-base libatm1 libatomic1 libatspi2.0-0 libaudio2 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libb-hooks-op-check-perl libbambamc0 libbamtools2.3.0 libbareword-filehandles-perl libbcprov-java libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-common libblas3 libboost-filesystem1.55.0 libboost-iostreams1.55.0 libboost-program-options1.55.0 libboost-regex1.55.0 libboost-serialization1.55.0 libboost-system1.55.0 libboost-thread1.55.0 libbsd-resource-perl libbsd0 libbytecode-java libc-dev-bin libc6-dev libcache-cache-perl libcairo-gobject2 libcairo2 libcanberra-gtk3-0 libcanberra-gtk3-module libcanberra0 libcarp-always-perl libcarp-clan-perl libcassie1 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgmanager0 libcgraph6 libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-isa-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcloog-isl4 libcofoja-java libcolamd2.8.0 libcolord2 libcolorhug2 libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-jexl2-java libcommons-lang-java libcommons-logging-java libcommons-math3-java libcommons-net2-java libcommons-parent-java libcommons-pool-java libconfig-general-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcr0 libcroco3 libcrypt-rc4-perl libcrypt-ssleay-perl libcups2 libcupsfilters1 libcupsimage2 libdata-dumper-simple-perl libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdb5.1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdconf1 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdjvulibre-text libdjvulibre21 libdns-export100 libdom4j-java libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libeigen3-dev libelf1 libelfg0 libelk0 libencode-locale-perl liberror-perl libexif12 libexiv2-12 libexiv2-13 libexpat1-dev libexporter-tiny-perl libfcgi-perl libffi5 libffi6 libfftw3-double3 libfile-basedir-perl libfile-copy-recursive-perl libfile-desktopentry-perl libfile-homedir-perl libfile-listing-perl libfile-mimeinfo-perl libfile-slurp-tiny-perl libfile-which-perl libflac8 libfont-afm-perl libfont-ttf-perl libfontconfig1 libfontenc1 libfreecontact0 libfreetype6 libfreezethaw-perl libg20 libgcc-4.9-dev libgcrypt11 libgd-graph-perl libgd-perl libgd-text-perl libgd2-xpm libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgetopt-euclid-perl libgetopt-simple-perl libgflags2 libgfortran3 libgif4 libgl1-mesa-dri libgl1-mesa-glx libglade2-0 libglapi-mesa libglib2.0-0 libglib2.0-data libglpk-java libglpk36 libglu1-mesa libgmp10 libgnutls-deb0-28 libgnutls26 libgomp1 libgoogle-glog0 libgphoto2-6 libgphoto2-l10n libgphoto2-port10 libgraph-perl libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libgtextutils0 libgtk-3-0 libgtk-3-bin libgtk-3-common libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgudev-1.0-0 libgusb2 libgvc6 libgvpr2 libhamcrest-java libharfbuzz-icu0 libharfbuzz0b libheap-perl libhogweed2 libhpdf-2.2.1 libhsqldb-java libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu52 libidn11 libieee1284-3 libijs-0.35 libilmbase6 libimport-into-perl libindirect-perl libio-all-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libisorelax-java libitm1 libjasper1 libjava-xmlbuilder-java libjaxen-java libjbig0 libjbig2dec0 libjbzip2-java libjcode-pm-perl libjcommon-java libjdom1-java libjets3t-java libjgoodies-common-java libjgoodies-forms-java libjpeg62-turbo libjpeg8 libjs-jquery libjs-jquery-ui libjs-underscore libjsch-java libjson-c2 libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp0 libjzlib-java libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms1 liblcms2-2 libldap-2.4-2 liblensfun-data liblensfun0 liblexical-sealrequirehints-perl liblist-allutils-perl liblist-moreutils-perl libllvm3.5 liblog-message-perl liblog-message-simple-perl liblog4j1.2-java liblqr-1-0 liblsan0 libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmagickcore-6.q16-2 libmagickcore-6.q16-2-extra libmagickcore5 libmagickcore5-extra libmagickwand-6.q16-2 libmagickwand5 libmail-java libmailtools-perl libmath-bezier-perl libmath-derivative-perl libmath-random-mt-perl libmath-round-perl libmath-spline-perl libmath-tamuanova-perl libmath-vec-perl libmath-vecstat-perl libmime-tools-perl libmldbm-perl libmng1 libmodule-build-perl libmodule-implementation-perl libmodule-pluggable-perl libmodule-runtime-perl libmodule-signature-perl libmoo-perl libmpc3 libmpfr4 libmro-compat-perl libmsv-java libmultidimensional-perl libmysql-java libmysqlclient18 libncbi6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetpbm10 libnettle4 libnih-dbus1 libnih1 libnotify4 libnspr4 libnss3 libnuma1 libogg0 libole-storage-lite-perl libopenexr6 libopenjpeg5 libopenmpi1.6 liboro-java libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-constants-perl libpadwalker-perl libpango-1.0-0 libpango1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangox-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl4-corelibs-perl libperl5.20 libperlio-gzip-perl libpixman-1-0 libpng12-0 libpod-coverage-perl libpod-latex-perl libpod-readme-perl libpolkit-agent-1-0 libpolkit-backend-1-0 libpolkit-gobject-1-0 libpoppler-qt4-4 libpoppler46 libpopt0 libpostscript-perl libpotrace0 libpq5 libprotobuf9 libproxy1 libptexenc1 libpth20 libpulse0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libqt4-xml libqtcore4 libqtgui4 libquadmath0 libreadonly-perl libregexp-common-perl libregexp-java librelaxng-datatype-java librest-0.7-0 librole-tiny-perl librsvg2-2 librsvg2-common libruby2.1 libsam-java libsane libsane-common libsane-extras libsane-extras-common libsasl2-2 libsasl2-modules libsasl2-modules-db libsaxonb-java libsctp1 libservlet2.5-java libset-intspan-perl libset-scalar-perl libsm6 libsndfile1 libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libsoup-gnome2.4-1 libsoup2.4-1 libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libstdc++-4.9-dev libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libswitch-perl libsynctex1 libsystemd-login0 libtamuanova-0.2 libtask-weaken-perl libtasn1-3 libtasn1-6 libtbb2 libtcl8.6 libtcmalloc-minimal4 libtdb1 libterm-readkey-perl libterm-ui-perl libtest-pod-perl libtext-format-perl libtext-soundex-perl libtext-template-perl libthai-data libthai0 libtie-ixhash-perl libtiff4 libtiff5 libtimedate-perl libtk8.6 libtre5 libtree-dagnode-perl libtry-tiny-perl libtsan0 libtxc-dxtn-s2tc0 libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libunicode-map-perl libunwind8 liburi-perl libusb-1.0-0 libutempter0 libv4l-0 libv4lconvert0 libvorbis0a libvorbisenc2 libvorbisfile3 libvpx1 libwayland-client0 libwayland-cursor0 libwebp5 libwebpdemux1 libwebpmux1 libwmf0.2-7 libwrap0 libwsdl4j-java libwww-perl libwww-robotrules-perl libwxbase3.0-0 libwxgtk3.0-0 libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxerces-c3.1 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxom-java libxpm4 libxpp2-java libxpp3-java libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-tiny-perl libzzip-0-13 linux-libc-dev lksctp-tools lmodern loki lua-filesystem lua-lpeg lua-md5 lynx lynx-cur macs mafft manpages manpages-dev mapsembler2 maq med-cloud med-config med-tasks melting menu mime-support minia mipe mira-assembler mothur muscle mustang mysql-client mysql-client-5.5 mysql-common ncbi-blast+ ncbi-data ncbi-epcr ncbi-tools-bin ncoils netbase netpbm notification-daemon ocl-icd-libopencl1 openjdk-7-jre openjdk-7-jre-headless openmpi-bin openmpi-common openssl parsinsert perl perl-doc perl-modules perl-tk perm phyml phyutility picard-tools pkg-config plink poa policykit-1 poppler-data prank prerex preview-latex-style primer3 probalign probcons proda prosper ps2eps python python-all python-all-dev python-biopython python-biopython-doc python-cairo python-cogent python-dateutil python-decorator python-dev python-glade2 python-gmpy python-gobject-2 python-gtk2 python-htseq python-imaging python-matplotlib python-matplotlib-data python-minimal python-mock python-mpmath python-nose python-numpy python-pexpect python-pil python-pkg-resources python-pyglet python-pyparsing python-pyrex python-pysam python-renderpm python-reportlab python-reportlab-accel python-scipy python-simplegeneric python-six python-support python-sympy python-tk python-tz python-wxgtk3.0 python-wxversion python2.6 python2.6-minimal python2.7 python2.7-dev python2.7-minimal qtcore4-l10n raster3d rename rnahybrid rtax ruby ruby2.1 rubygems-integration samtools sane-utils seqan-apps sgml-base shared-mime-info sim4 smalt ssake systemd-shim t-coffee tasksel tasksel-data tcl tcl8.6 tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc tigr-glimmer tipa tk tk8.6 tk8.6-blt2.5 tm-align tophat ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis ttf-dejavu-core tzdata-java ufraw-batch update-inetd velvet vprerex wise wise-data wwwconfig-common x11-common x11-utils x11-xserver-utils xbitmaps xdg-user-dirs xdg-utils xkb-data xml-core xterm 0 upgraded, 0 newly installed, 936 to remove and 0 not upgraded. After this operation, 3868 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 130383 files and directories currently installed.) Removing acedb-other (4.9.39+dfsg.01-5) ... Removing notification-daemon (0.7.6-2) ... Removing aevol (4.4-1) ... Removing alien-hunter (1.7-3) ... Removing altree (1.3.1-2+b1) ... Removing amap-align (2.2-4) ... Removing ampliconnoise (1.29-2) ... Removing anfo (0.98-4+b1) ... Removing biomaj (1.2.3-4) ... Warning, BioMAJ database for MySQL is not deleted by process removal. Removing libsaxonb-java (9.1.0.8+dfsg-1) ... Removing libdom4j-java (1.6.1+dfsg.3-2) ... Removing libmsv-java (2009.1+dfsg1-4) ... Removing ant-contrib (1.0~b3+svn177-6) ... Removing ant-optional (1.9.4-3) ... Removing libapache2-reload-perl (0.12-3) ... Removing libapache-dbi-perl (1.12-1) ... Removing libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... Removing apache2-bin (2.4.10-10+deb8u12) ... Removing aragorn (1.2.36-4) ... Removing arden (1.0-1) ... Removing at-spi2-core (2.14.0-1) ... Removing autodock (4.2.6-2) ... Removing autodock-vina (1.1.2-3+b1) ... Removing autogrid (4.2.6-2) ... Removing bamtools (2.3.0+dfsg-2) ... Removing minia (1.6088-1) ... Removing mapsembler2 (2.1.6+dfsg-1) ... Removing bedtools (2.21.0-1) ... Removing g++ (4:4.9.2-2) ... Removing gcc (4:4.9.2-2) ... Removing g++-4.9 (4.9.2-10+deb8u1) ... Removing gcc-4.9 (4.9.2-10+deb8u1) ... Removing binutils (2.25-5+deb8u1) ... Removing bioperl-run (1.6.9-2) ... Removing bioperl (1.6.924-1) ... Removing biosquid (1.9g+cvs20050121-4) ... Removing blast2 (1:2.2.26.20120620-8) ... Removing med-cloud (2.0) ... Removing med-config (2.0) ... Removing blends-common (0.6.92.2) ... Removing python-tk (2.7.8-2+b1) ... Removing blt (2.5.3+dfsg-1) ... Removing giira (0.0.20140210-2) ... Removing tophat (2.0.13+dfsg-1) ... Removing gasic (0.0.r18-2) ... Removing bowtie (1.1.1-2) ... Removing bowtie2 (2.2.4-1) ... Removing boxshade (3.3.1-8) ... Removing bwa (0.7.10-1) ... Removing ruby (1:2.1.5+deb8u2) ... Removing ruby2.1 (2.1.5-2+deb8u3) ... Removing rubygems-integration (1.8) ... Removing libgraphviz-perl (2.16-1) ... Removing libxml-xpath-perl (1.13-7) ... Removing picard-tools (1.113-1) ... Removing libbiojava-java (1:1.7.1-5) ... Removing libbiojava1.7-java (1:1.7.1-5) ... Removing libbytecode-java (0.92.svn.20090106-1.1) ... Removing default-jre (2:1.7-52) ... Removing openjdk-7-jre:amd64 (7u181-2.6.14-1~deb8u1) ... Removing junit4 (4.11-3) ... Removing default-jre-headless (2:1.7-52) ... Removing cain-examples (1.9-8) ... Removing cain (1.9-8) ... Removing cain-solvers (1.9-8) ... Removing cassiopee (1.0.1+dfsg-3+b1) ... Removing cd-hit (4.6.1-2012-08-27-2) ... Removing cdbfasta (0.99-20100722-1) ... Removing systemd-shim (9-1) ... Removing 'diversion of /usr/share/dbus-1/system-services/org.freedesktop.systemd1.service to /usr/share/dbus-1/system-services/org.freedesktop.systemd1.service.systemd by systemd-shim' Removing cgmanager (0.33-2+deb8u2) ... invoke-rc.d: policy-rc.d denied execution of stop. invoke-rc.d: policy-rc.d denied execution of stop. Removing circos-tools (0.18-1) ... Removing circos (0.66-1) ... Removing clearcut (1.0.9-1) ... Removing clonalframe (1.2-3) ... Removing clustalo (1.2.1-1) ... Removing clustalw (2.1+lgpl-4) ... Removing colord (1.2.1-1+b2) ... Removing colord-data (1.2.1-1) ... Removing concavity (0.1-2) ... Removing x11-xserver-utils (7.7+3+b1) ... Removing cpp (4:4.9.2-2) ... Removing cpp-4.9 (4.9.2-10+deb8u1) ... Removing fitgcp (0.0.20130418-2) ... Removing python-pysam (0.7.7-1) ... Removing cython (0.21.1-1) ... Removing datamash (1.0.6-2) ... Removing dialign (2.2.1-7) ... Removing dialign-tx (1.0.2-7) ... Removing dialign-tx-data (1.0.2-7) ... Removing discosnp (1.2.5-1) ... Removing disulfinder (1.2.11-4) ... Removing disulfinder-data (1.2.11-4) ... Removing laptop-detect (0.13.7) ... Removing dmidecode (2.12-3) ... Removing dnaclust (3-2+b1) ... Removing dssp (2.2.1-2+b1) ... Removing dvipng (1.14-2+b1) ... Removing emboss (6.6.0+dfsg-1) ... Removing emboss-data (6.6.0+dfsg-1) ... Removing emboss-lib (6.6.0+dfsg-1) ... Removing exonerate (2.2.0-6) ... Removing fastdnaml (1.2.2-10) ... Removing fastlink (4.1P-fix95-3) ... Removing fastqc (0.11.2+dfsg-3) ... Removing fasttree (2.1.7-2) ... Removing fastx-toolkit (0.0.14-1) ... Removing file (1:5.22+15-2+deb8u4) ... Removing filo (1.1+2011123001.1) ... Removing flexbar (2.50-1) ... Removing vprerex (6.5.3-1) ... Removing libpoppler-qt4-4:amd64 (0.26.5-2+deb8u4) ... Removing libqtgui4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing python-wxgtk3.0 (3.0.1.1+dfsg-2) ... Removing libwxgtk3.0-0:amd64 (3.0.2-1+b1) ... Removing libmagickcore5-extra:amd64 (8:6.7.7.10-5+deb7u4) ... Removing libmagickwand5:amd64 (8:6.7.7.10-5+deb7u4) ... Removing libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Removing texlive-fonts-extra (2014.20141024-1) ... Removing fonts-cabin (1.5-2) ... Removing fonts-circos-symbols (0.66-1) ... Removing fonts-cmu (0.7.0-3) ... Removing fonts-comfortaa (2.003-1) ... Removing fonts-crosextra-caladea (20130214-1) ... Removing fonts-crosextra-carlito (20130920-1) ... Removing ttf-dejavu-core (2.34-1) ... Removing fonts-dejavu-extra (2.34-1) ... Removing fonts-dejavu-core (2.34-1) ... Removing fonts-droid (1:4.4.4r2-6) ... Removing fonts-ebgaramond (0.015+git20130628-3) ... Removing fonts-ebgaramond-extra (0.015+git20130628-3) ... Removing fonts-font-awesome (4.2.0~dfsg-1) ... Removing fonts-freefont-otf (20120503-4) ... Removing fonts-freefont-ttf (20120503-4) ... Removing fonts-gfs-artemisia (1.1-5) ... Removing fonts-gfs-complutum (1.1-6) ... Removing fonts-gfs-didot (1.1-6) ... Removing fonts-gfs-neohellenic (1.1-6) ... Removing fonts-gfs-olga (1.1-5) ... Removing fonts-gfs-solomos (1.1-5) ... Removing fonts-inconsolata (001.010-5) ... Removing fonts-junicode (0.7.8-2) ... Removing fonts-lato (2.0-1) ... Removing fonts-linuxlibertine (5.3.0-2) ... Removing lmodern (2.004.4-5) ... Removing fonts-lmodern (2.004.4-5) ... Removing fonts-lobstertwo (2.0-2) ... Removing fonts-lobster (2.0-2) ... Removing python-matplotlib (1.4.2-3.1) ... Removing python-matplotlib-data (1.4.2-3.1) ... Removing fonts-lyx (2.1.2-2) ... Removing fonts-oflb-asana-math (000.907-6) ... Removing fonts-sil-gentium (20081126:1.02-13) ... Removing fonts-sil-gentium-basic (1.1-7) ... Removing fonts-stix (1.1.1-1) ... Removing fonts-texgyre (20140520-1) ... Removing freecontact (1.0.21-3+b1) ... Removing genometools (1.5.3-2) ... Removing genometools-common (1.5.3-2) ... Removing raster3d (3.0-3-1) ... Removing ps2eps (1.68+binaryfree-1) ... Removing glpk-utils (4.55-1) ... Removing graphviz (2.38.0-7) ... Removing grinder (0.5.3-3) ... Removing python-renderpm:amd64 (3.1.8-3+deb8u1) ... Removing imagemagick (8:6.8.9.9-5+deb8u12) ... Removing imagemagick-6.q16 (8:6.8.9.9-5+deb8u12) ... Removing hmmer (3.1b1-3) ... Removing idba (1.1.2-1) ... Removing ifupdown (0.7.53.1) ... Removing libmagickcore5:amd64 (8:6.7.7.10-5+deb7u4) ... Removing libmagickcore-6.q16-2-extra:amd64 (8:6.8.9.9-5+deb8u12) ... Removing libmagickwand-6.q16-2:amd64 (8:6.8.9.9-5+deb8u12) ... Removing infernal (1.1.1-2) ... Removing sane-utils (1.0.24-8+deb8u2) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing init-system-helpers (1.22) ... Removing iproute (1:3.16.0-2) ... Removing isc-dhcp-client (4.3.1-6+deb8u3) ... Removing iproute2 (3.16.0-2) ... Removing ipython (2.3.0-2) ... Removing isc-dhcp-common (4.3.1-6+deb8u3) ... Removing javascript-common (11) ... Removing kalign (1:2.03+20110620-2) ... Removing kissplice (2.2.1-3) ... Removing krb5-locales (1.12.1+dfsg-19+deb8u4) ... Removing last-align (490-1) ... Removing libace-perl (1.92-3+b1) ... Removing libsoftware-license-perl (0.103010-3) ... Removing libdata-section-perl (0.200006-1) ... Removing libmro-compat-perl (0.12-1) ... Removing libclass-c3-perl (0.26-1) ... Removing libalgorithm-c3-perl (0.09-1) ... Removing libalgorithm-diff-xs-perl (0.04-3+b1) ... Removing libalgorithm-diff-perl (1.19.02-3) ... Removing libalgorithm-munkres-perl (0.08-2) ... Removing libglpk-java (1.0.37-1) ... Removing libglpk36:amd64 (4.55-1) ... Removing libamd2.3.1:amd64 (1:4.2.1-3) ... Removing libanfo0 (0.98-4+b1) ... Removing libcommons-jexl2-java (2.1.1-2) ... Removing libjets3t-java (0.8.1+dfsg-1) ... Removing libaxis-java (1.4-22) ... Removing libcommons-discovery-java (0.5-3) ... Removing libcommons-cli-java (1.2-3) ... Removing libcommons-lang-java (2.6-4) ... Removing libaprutil1-ldap:amd64 (1.5.4-1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Removing libaprutil1:amd64 (1.5.4-1) ... Removing libapr1:amd64 (1.5.1-3) ... Removing libarchive-extract-perl (0.72-1) ... Removing libargtable2-0 (12-1.1) ... Removing libarray-compare-perl (2.11-1) ... Removing libart-2.0-2:amd64 (2.3.21-2) ... Removing libstdc++-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Removing libgcc-4.9-dev:amd64 (4.9.2-10+deb8u1) ... Removing libasan1:amd64 (4.9.2-10+deb8u1) ... Removing libcanberra-gtk3-module:amd64 (0.30-2.1) ... Removing libcanberra-gtk3-0:amd64 (0.30-2.1) ... Removing libcanberra0:amd64 (0.30-2.1) ... Removing libasound2:amd64 (1.0.28-1) ... Removing libasound2-data (1.0.28-1) ... Removing libatk-wrapper-java-jni:amd64 (0.30.5-1) ... Removing libatk-wrapper-java (0.30.5-1) ... Removing python-glade2 (2.24.0-4) ... Removing python-gtk2 (2.24.0-4) ... Removing libglade2-0:amd64 (1:2.6.4-2) ... Removing python-scipy (0.14.0-2) ... Removing python-cogent (1.5.3-2) ... Removing python-biopython (1.64+dfsg-5) ... Removing macs (2.0.9.1-1) ... Removing python-numpy (1:1.8.2-2) ... Removing libfreecontact0 (1.0.21-3+b1) ... Removing libmath-tamuanova-perl (1.0.2-2+b2) ... Removing libatlas3-base (3.10.2-7) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Removing libatm1:amd64 (1:2.5.1-1.5) ... Removing libatomic1:amd64 (4.9.2-10+deb8u1) ... Removing libaudio2:amd64 (1.9.4-3) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing libsane:amd64 (1.0.24-8+deb8u2) ... Removing python-pyglet (1.1.4.dfsg-2) ... Removing libmultidimensional-perl (0.010-1+b2) ... Removing libbareword-filehandles-perl (0.003-1+b2) ... Removing libb-hooks-op-check-perl (0.19-2+b1) ... Removing smalt (0.7.6-4) ... Removing libbambamc0 (0.0.50-1) ... Removing libbamtools2.3.0 (2.3.0+dfsg-2) ... Removing libbcprov-java (1.49+dfsg-3+deb8u2) ... Removing libbio-asn1-entrezgene-perl (1.700-1) ... Removing libbio-perl-run-perl (1.6.9-2) ... Removing libbio-perl-perl (1.6.924-1) ... Removing libdate-calc-xs-perl (6.3-2) ... Removing libdate-calc-perl (6.3-2) ... Removing libbit-vector-perl (7.3-1+b2) ... Removing liblapack3 (3.5.0-4) ... Removing libblas3 (1.2.20110419-10) ... Removing libblas-common (1.2.20110419-10) ... Removing mira-assembler (4.0.2-1+b1) ... Removing libboost-filesystem1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libcassie1 (1.0.1+dfsg-3+b1) ... Removing libboost-iostreams1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-program-options1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-regex1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-serialization1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-thread1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-system1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libbsd-resource-perl (1.2907-1+b2) ... Removing lynx (2.8.9dev1-2+deb8u1) ... Removing lynx-cur (2.8.9dev1-2+deb8u1) ... Removing prerex (6.5.3-1) ... Removing python-all-dev (2.7.9-1) ... Removing python-dev (2.7.9-1) ... Removing python2.7-dev (2.7.9-2+deb8u1) ... Removing libpython-all-dev:amd64 (2.7.9-1) ... Removing libpython-dev:amd64 (2.7.9-1) ... Removing libpython2.7-dev:amd64 (2.7.9-2+deb8u1) ... Removing libexpat1-dev:amd64 (2.1.0-6+deb8u4) ... Removing libc6-dev:amd64 (2.19-18+deb8u10) ... Removing libc-dev-bin (2.19-18+deb8u10) ... Removing libcache-cache-perl (1.07-2) ... Removing python-cairo (1.8.8-1+b2) ... Removing libpango1.0-0:amd64 (1.36.8-3) ... Removing libcarp-always-perl (0.12-1) ... Removing libcarp-clan-perl (6.04-1) ... Removing libgvpr2 (2.38.0-7) ... Removing libgvc6 (2.38.0-7) ... Removing libcgi-fast-perl (1:2.04-1) ... Removing libcgi-pm-perl (4.09-1) ... Removing libcgmanager0:amd64 (0.33-2+deb8u2) ... Removing libcgraph6 (2.38.0-7) ... Removing libcilkrts5:amd64 (4.9.2-10+deb8u1) ... Removing libclass-c3-xs-perl (0.13-2+b1) ... Removing libxmlrpc-lite-perl (0.717-1) ... Removing libsoap-lite-perl (1.11-1) ... Removing libclass-inspector-perl (1.28-1) ... Removing libclass-isa-perl (0.36-5) ... Removing libmoo-perl (1.006001-1) ... Removing librole-tiny-perl (1.003004-1) ... Removing libclass-method-modifiers-perl (2.11-1) ... Removing libclass-xsaccessor-perl (1.19-2+b4) ... Removing libclone-perl (0.37-1+b1) ... Removing libcloog-isl4:amd64 (0.18.2-1+b2) ... Removing libcofoja-java (1.1-r150-2) ... Removing libcolamd2.8.0:amd64 (1:4.2.1-3) ... Removing libcolorhug2:amd64 (1.2.1-1+b2) ... Removing libcommons-httpclient-java (3.1-11+deb8u1) ... Removing libcommons-codec-java (1.9-1) ... Removing libcommons-collections3-java (3.2.1-7+deb8u1) ... Removing libcommons-dbcp-java (1.4-5) ... Removing libcommons-math3-java (3.3-1) ... Removing libcommons-net2-java (2.2-2) ... Removing libcommons-pool-java (1.6-2) ... Removing libconfig-general-perl (2.56-1) ... Removing libconvert-binary-c-perl (0.76-3+b2) ... Removing libmime-tools-perl (5.505-1) ... Removing libconvert-binhex-perl (1.123-2) ... Removing libmodule-build-perl (0.421000-2+deb8u1) ... Removing 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Removing 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Removing libcpan-meta-perl (2.142690-1) ... Removing openmpi-bin (1.6.5-9.1+deb8u1) ... Removing libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Removing libcr0 (0.8.5-2.2) ... Removing libspreadsheet-parseexcel-perl (0.6500-1) ... Removing libcrypt-rc4-perl (2.02-2) ... Removing libcrypt-ssleay-perl (0.58-1+b2) ... Removing prosper (1.00.4+cvs.2007.05.01-4) ... Running 'mktexlsr /usr/share/texmf /var/lib/texmf'. This may take some time... done. Removing texlive-pstricks (2014.20141024-1) ... Removing tipa (2:1.3-20) ... Removing texlive-latex-extra (2014.20141024-1) ... Removing libdata-dumper-simple-perl (0.11-4) ... Removing libsub-exporter-perl (0.986-1) ... Removing libdata-optlist-perl (0.109-1) ... Removing libdata-stag-perl (0.13-1) ... Removing libdate-manip-perl (6.47-1) ... Removing libpangox-1.0-0:amd64 (0.0.2-5) ... Removing python-simplegeneric (0.8.1-1) ... Removing python-gmpy (1.15-1) ... Removing python2.6 (2.6.8-1.1) ... Removing libdb5.1:amd64 (5.1.29-5) ... Removing mysql-client (5.5.60-0+deb8u1) ... Removing mysql-client-5.5 (5.5.60-0+deb8u1) ... Removing libdbd-mysql-perl (4.028-2+deb8u2) ... Removing libdbd-pg-perl (3.4.2-1) ... Removing libdbd-sqlite3-perl (1.44-1) ... Removing libdbi-perl (1.631-3+b1) ... Removing libdevel-lexalias-perl (0.05-1+b2) ... Removing libdevel-caller-perl (2.06-1+b2) ... Removing libdevel-globaldestruction-perl (0.13-1) ... Removing libpod-coverage-perl (0.23-1) ... Removing libdevel-symdump-perl (2.12-1) ... Removing libdigest-perl-md5-perl (1.9-1) ... Removing libdjvulibre21:amd64 (3.5.25.4-4+b1) ... Removing libdjvulibre-text (3.5.25.4-4) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u15) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u15) ... Removing libgl1-mesa-dri:amd64 (10.3.2-1+deb8u1) ... Removing libdrm-intel1:amd64 (2.4.58-2) ... Removing libdrm-nouveau2:amd64 (2.4.58-2) ... Removing libdrm-radeon1:amd64 (2.4.58-2) ... Removing x11-utils (7.7+2) ... Removing libglu1-mesa:amd64 (9.0.0-2) ... Removing libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Removing libdrm2:amd64 (2.4.58-2) ... Removing libeigen3-dev (3.2.2-3) ... Removing libelf1:amd64 (0.159-4.2) ... Removing libelk0 (3.99.8-2.1) ... Removing libelfg0:amd64 (0.8.13-5) ... Removing liberror-perl (0.17-1.1) ... Removing libgphoto2-6:amd64 (2.5.4-1.1+b2) ... Removing libexif12:amd64 (0.6.21-2) ... Removing libexiv2-12 (0.23-1) ... Removing ufraw-batch (0.20-2+deb8u1) ... Removing libexiv2-13:amd64 (0.24-4.1) ... Removing libtype-tiny-perl (1.000004-1) ... Removing libexporter-tiny-perl (0.038-2) ... Removing libfcgi-perl (0.77-1+deb8u1) ... Removing libffi5:amd64 (3.0.10-3) ... Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Removing libmagickcore-6.q16-2:amd64 (8:6.8.9.9-5+deb8u12) ... Removing libfftw3-double3:amd64 (3.3.4-2) ... Removing libfile-mimeinfo-perl (0.26-1) ... Removing libfile-desktopentry-perl (0.07-1) ... Removing libfile-basedir-perl (0.03-1) ... Removing update-inetd (4.43) ... Removing libfile-copy-recursive-perl (0.38-1) ... Removing libfile-homedir-perl (1.00-1) ... Removing libsvg-graph-perl (0.02-2) ... Removing libtree-dagnode-perl (1.22-1) ... Removing libfile-slurp-tiny-perl (0.003-1) ... Removing libfile-which-perl (1.09-1) ... Removing libhtml-format-perl (2.11-1) ... Removing libfont-afm-perl (1.20-1) ... Removing libfont-ttf-perl (1.04-1) ... Removing libfontenc1:amd64 (1:1.1.2-1+b2) ... Removing xterm (312-2) ... Removing libfreezethaw-perl (0.5001-1) ... Removing rnahybrid (2.1.1-2) ... Removing libg20 (0.72-5+b1) ... Removing libgnutls26:amd64 (2.12.20-8+deb7u5) ... Removing libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Removing libgd-graph-perl (1.48-2) ... Removing libgd-text-perl (0.86-9) ... Removing libgd-perl (2.53-1+b1) ... Removing libgd3:amd64 (2.1.0-5+deb8u11) ... Removing ssake (3.8.2-1) ... Removing libwmf0.2-7:amd64 (0.2.8.4-10.3+deb8u2) ... Removing libnotify4:amd64 (0.7.6-2) ... Removing libgetopt-euclid-perl (0.4.5-1) ... Removing libgetopt-simple-perl (1.52-4) ... Removing libgoogle-glog0 (0.3.3-2) ... Removing libgflags2 (2.0-2.1) ... Removing tm-align (20140601+dfsg-1) ... Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Removing libgif4:amd64 (4.1.6-11+deb8u1) ... Removing libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Removing wise (2.4.1-17) ... Removing libgusb2:amd64 (0.1.6-5) ... Removing libgudev-1.0-0:amd64 (215-17+deb8u7) ... Removing libglib2.0-data (2.42.1-1) ... Removing libpq5:amd64 (9.4.18-0+deb8u1) ... Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Removing velvet (1.2.10+dfsg1-1) ... Removing seqan-apps (1.4.1+dfsg-2) ... Removing libgphoto2-l10n (2.5.4-1.1) ... Removing libgphoto2-port10:amd64 (2.5.4-1.1+b2) ... Removing libgraph-perl (1:0.96-1.1) ... Removing libgraphics-colorobject-perl (0.5.0-6) ... Removing libgraphics-colornames-perl (2.11-6) ... Removing libpangoxft-1.0-0:amd64 (1.36.8-3) ... Removing libtamuanova-0.2 (0.2-3) ... Removing libgsl0ldbl (1.16+dfsg-2) ... Removing libgtextutils0:amd64 (0.7-2) ... Removing libgtk2.0-bin (2.24.25-3+deb8u2) ... Removing libhamcrest-java (1.3-5) ... Removing libheap-perl (0.80-2) ... Removing libhpdf-2.2.1 (2.2.1-1.1) ... Removing libhsqldb-java (2.2.9+dfsg-4) ... Removing libhtml-form-perl (6.03-1) ... Removing libhtml-tableextract-perl (2.11-1) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libhwloc-plugins (1.10.0-3) ... Removing libhwloc5:amd64 (1.10.0-3) ... Removing libibverbs1 (1.1.8-1.1) ... Removing libxerces-c3.1:amd64 (3.1.1-5.1+deb8u4) ... Removing libieee1284-3:amd64 (0.2.11-12) ... Removing libopenexr6:amd64 (1.6.1-8) ... Removing libilmbase6:amd64 (1.0.1-6.1) ... Removing libimport-into-perl (1.002004-1) ... Removing libindirect-perl (0.33-1) ... Removing libio-all-perl (0.79-1) ... Removing libipc-run-perl (0.92-1+deb8u1) ... Removing libio-pty-perl (1:1.08-1+b4) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libmailtools-perl (2.13-1) ... Removing libnet-smtp-ssl-perl (1.01-3) ... Removing libio-string-perl (1.08-3) ... Removing libtest-pod-perl (1.48-1) ... Removing libole-storage-lite-perl (0.19-1) ... Removing libio-stringy-perl (2.110-5) ... Removing libipc-sharelite-perl (0.17-3+b2) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u15) ... Removing libisl10:amd64 (0.12.2-2) ... Removing libisorelax-java (20041111-8) ... Removing libitm1:amd64 (4.9.2-10+deb8u1) ... Removing libjava-xmlbuilder-java (0.4-2) ... Removing libxom-java (1.2.10-1) ... Removing libjdom1-java (1.1.3-1) ... Removing libjaxen-java (1.1.6-1) ... Removing libtiff4:amd64 (3.9.6-11) ... Removing libjbzip2-java (0.9.1-3) ... Removing libjcode-pm-perl (2.06-1) ... Removing libjcommon-java (1.0.16-4) ... Removing libjgoodies-forms-java (1.6.0-4) ... Removing libjgoodies-common-java (1.4.0-2) ... Removing libv4l-0:amd64 (1.6.0-2) ... Removing libv4lconvert0:amd64 (1.6.0-2) ... Removing python-imaging (2.6.1-2+deb8u3) ... Removing python-pil:amd64 (2.6.1-2+deb8u3) ... Removing libjpeg8:amd64 (8d-1+deb7u1) ... Removing libjs-jquery-ui (1.10.1+dfsg-1) ... Removing libjs-jquery (1.7.2+dfsg-3.2) ... Removing libjs-underscore (1.7.0~dfsg-1) ... Removing libjsch-java (0.1.51-1) ... Removing libjsoncpp0 (0.6.0~rc2-3.1) ... Removing libjzlib-java (1.1.3-1) ... Removing liblcms1:amd64 (1.19.dfsg2-1.2+deb7u1) ... Removing libmng1:amd64 (1.0.10+dfsg-3.1+b3) ... Removing liblensfun0 (0.2.8-2) ... Removing liblensfun-data (0.2.8-2) ... Removing liblexical-sealrequirehints-perl (0.007-1+b2) ... Removing liblist-allutils-perl (0.09-1) ... Removing libstatistics-descriptive-perl (3.0607-1) ... Removing liblist-moreutils-perl (0.33-2+b1) ... Removing libllvm3.5:amd64 (1:3.5-10) ... Removing libterm-ui-perl (0.42-1) ... Removing liblog-message-simple-perl (0.10-2) ... Removing liblog-message-perl (0.8-1) ... Removing liblog4j1.2-java (1.2.17-5) ... Removing liblqr-1-0:amd64 (0.4.2-2) ... Removing liblsan0:amd64 (4.9.2-10+deb8u1) ... Removing libltdl7:amd64 (2.4.2-1.11+b1) ... Removing liblua5.1-0:amd64 (5.1.5-7.1) ... Removing libmagic1:amd64 (1:5.22+15-2+deb8u4) ... Removing libmail-java (1.5.2-3) ... Removing libmath-bezier-perl (0.01-1) ... Removing libmath-spline-perl (0.02-1) ... Removing libmath-derivative-perl (0.01-6) ... Removing libmath-random-mt-perl (1.16-1+b2) ... Removing libmath-round-perl (0.06-4) ... Removing libmath-vec-perl (1.01-2) ... Removing libmath-vecstat-perl (0.08-1) ... Removing libmldbm-perl (2.05-1) ... Removing libparams-validate-perl (1.13-1+b1) ... Removing libmodule-implementation-perl (0.09-1) ... Removing libmodule-pluggable-perl (5.1-1) ... Removing libmodule-runtime-perl (0.014-1) ... Removing libmodule-signature-perl (0.73-1+deb8u2) ... Removing libmpc3:amd64 (1.0.2-1) ... Removing libmysql-java (5.1.42-1~deb8u1) ... Removing libmysqlclient18:amd64 (5.5.60-0+deb8u1) ... Removing ncbi-tools-bin (6.1.20120620-8) ... Removing libncbi6:amd64 (6.1.20120620-8) ... Removing libnet-dbus-perl (1.0.0-2+b2) ... Removing netpbm (2:10.0-15.2) ... Removing libnetpbm10 (2:10.0-15.2) ... Removing libnih-dbus1 (1.0.3-4.3) ... Removing libnih1 (1.0.3-4.3) ... Removing libnuma1:amd64 (2.0.10-1) ... Removing libvorbisfile3:amd64 (1.3.4-2+deb8u1) ... Removing liboro-java (2.0.8a-9) ... Removing libossp-uuid-perl (1.6.2-1.5+b1) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Removing libpackage-constants-perl (0.04-1) ... Removing libpadwalker-perl (1.98-1+b1) ... Removing texlive-pstricks-doc (2014.20141024-1) ... Removing texlive-latex-extra-doc (2014.20141024-1) ... Removing libparams-classify-perl (0.013-4+b2) ... Removing libparams-util-perl (1.07-2+b1) ... Removing libspreadsheet-writeexcel-perl (2.40-1) ... Removing libparse-recdescent-perl (1.967009+dfsg-1) ... Removing libpathplan4 (2.38.0-7) ... Removing libpciaccess0:amd64 (0.13.2-3+b1) ... Removing libperl4-corelibs-perl (0.003-1) ... Removing libperl5.20 (5.20.2-3+deb8u11) ... Removing libperlio-gzip-perl (0.18-3+b1) ... Removing perl-tk (1:804.032-3+b3) ... Removing libpod-latex-perl (0.61-1) ... Removing 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Removing 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Removing libpod-readme-perl (0.11-1) ... Removing policykit-1 (0.105-15~deb8u2) ... Removing libpolkit-agent-1-0:amd64 (0.105-15~deb8u2) ... Removing libpolkit-backend-1-0:amd64 (0.105-15~deb8u2) ... Removing libpolkit-gobject-1-0:amd64 (0.105-15~deb8u2) ... Removing libpopt0:amd64 (1.16-10) ... Removing libpostscript-perl (0.06-2) ... Removing libprotobuf9:amd64 (2.6.1-1) ... Removing libpth20:amd64 (2.0.7-20) ... Removing python-sympy (0.7.5-3) ... Removing python-wxversion (3.0.1.1+dfsg-2) ... Removing python-tz (2012c+dfsg-0.1) ... Removing python-dateutil (2.2-2) ... Removing python-six (1.8.0-1) ... Removing libpython2.7:amd64 (2.7.9-2+deb8u1) ... Removing texlive-extra-utils (2014.20141024-1) ... Removing python-nose (1.3.4-1) ... Removing python-all (2.7.9-1) ... Removing python-support (1.0.15) ... Removing libqt4-xml:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing libqtcore4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Removing libreadonly-perl (2.000-1) ... Removing libregexp-common-perl (2013031301-1) ... Removing libregexp-java (1.5-3) ... Removing librelaxng-datatype-java (1.0+ds1-3) ... Removing libsam-java (1.113-1) ... Removing libsane-common (1.0.24-8+deb8u2) ... Removing libsane-extras:amd64 (1.0.22.3) ... Removing libsane-extras-common (1.0.22.3) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing lksctp-tools (1.0.16+dfsg-2) ... Removing libservlet2.5-java (6.0.45+dfsg-1~deb8u1) ... Removing libset-intspan-perl (1.19-1) ... Removing libset-scalar-perl (1.29-1) ... Removing libsort-naturally-perl (1.03-1) ... Removing libspiffy-perl (0.41-1) ... Removing python2.6-minimal (2.6.8-1.1) ... Removing libstrictures-perl (1.005005-1) ... Removing libsub-exporter-progressive-perl (0.001011-1) ... Removing libsub-install-perl (0.928-1) ... Removing libsub-name-perl (0.12-1) ... Removing libsvg-perl (2.59-1) ... Removing libswitch-perl (2.17-2) ... Removing libsystemd-login0:amd64 (215-17+deb8u7) ... Removing libtask-weaken-perl (1.04-1) ... Removing libtasn1-3:amd64 (2.13-2+deb7u2) ... Removing libtbb2 (4.2~20140122-5) ... Removing tk (8.6.0+8) ... Removing tk8.6 (8.6.2-1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-1) ... Removing libtk8.6:amd64 (8.6.2-1) ... Removing libtcmalloc-minimal4 (2.2.1-0.2) ... Removing libtdb1:amd64 (1.3.6-0+deb8u1) ... Removing libterm-readkey-perl (2.32-1+b1) ... Removing libtext-format-perl (0.59-1) ... Removing libtext-soundex-perl (3.4-1+b2) ... Removing libtext-template-perl (1.46-1) ... Removing libtie-ixhash-perl (1.23-1) ... Removing libtre5:amd64 (0.8.0-4+deb8u1) ... Removing libtry-tiny-perl (0.22-1) ... Removing libtsan0:amd64 (4.9.2-10+deb8u1) ... Removing libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... Removing libtype-tiny-xs-perl (0.010-1) ... Removing libubsan0:amd64 (4.9.2-10+deb8u1) ... Removing libunicode-map-perl (0.112-11+b1) ... Removing libunwind8 (1.1-3.2) ... Removing libusb-1.0-0:amd64 (2:1.0.19-1) ... Removing libutempter0 (1.1.5-4) ... Removing libvpx1:amd64 (1.3.0-3+deb8u1) ... Removing libwebpmux1:amd64 (0.4.1-1.2+b2) ... Removing libwebpdemux1:amd64 (0.4.1-1.2+b2) ... Removing libwebp5:amd64 (0.4.1-1.2+b2) ... Removing tcpd (7.6.q-25) ... Removing libwsdl4j-java (1.6.3-1) ... Removing libwxbase3.0-0:amd64 (3.0.2-1+b1) ... Removing libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Removing libx11-protocol-perl (0.56-6) ... Removing libxcb-sync1:amd64 (1.10-3+b1) ... Removing libxcb-dri2-0:amd64 (1.10-3+b1) ... Removing libxcb-dri3-0:amd64 (1.10-3+b1) ... Removing libxcb-glx0:amd64 (1.10-3+b1) ... Removing libxcb-present0:amd64 (1.10-3+b1) ... Removing libxcb-shape0:amd64 (1.10-3+b1) ... Removing libxdot4 (2.38.0-7) ... Removing libxerces2-java (2.11.0-7) ... Removing libxxf86dga1:amd64 (2:1.1.4-1+b1) ... Removing libxml-commons-external-java (1.4.01-2) ... Removing libxml-commons-resolver1.1-java (1.2-7) ... Removing libxml-dom-xpath-perl (0.14-1) ... Removing libxml-dom-perl (1.44-1) ... Removing libxml-sax-writer-perl (0.54-1) ... Removing libxml-filter-buffertext-perl (1.01-5) ... Removing libxml-simple-perl (2.20-1) ... Removing libxml-libxslt-perl (1.92-1+b1) ... Removing libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.11-1) ... Removing mipe (1.1-4) ... Removing libxml-perl (0.08-2) ... Removing libxml-regexp-perl (0.04-1) ... Removing libxml-sax-base-perl (1.07-1) ... Removing libxml-twig-perl (1:3.48-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libxml-xpathengine-perl (0.13-1) ... Removing libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Removing libxmuu1:amd64 (2:1.1.2-1) ... Removing libxpp2-java (2.1.10-7) ... Removing libxpp3-java (1.1.4c-2) ... Removing libxshmfence1:amd64 (1.1-4) ... Removing libxss1:amd64 (1:1.2.2-1) ... Removing libxtables10 (1.4.21-2+b1) ... Removing libxv1:amd64 (2:1.0.10-1+deb8u1) ... Removing libyaml-0-2:amd64 (0.1.6-3) ... Removing libyaml-libyaml-perl (0.41-6) ... Removing libyaml-perl (1.13-1) ... Removing libyaml-tiny-perl (1.64-1) ... Removing linux-libc-dev:amd64 (3.16.56-1+deb8u1) ... Removing loki (2.4.7.4-5) ... Removing lua-filesystem:amd64 (1.6.2-3) ... Removing lua-lpeg:amd64 (0.12-1) ... Removing lua-md5:amd64 (1.2+git+1+8d87fee-1) ... Removing mafft (7.205-1) ... Removing manpages-dev (3.74-1) ... Removing manpages (3.74-1) ... Removing maq (0.7.1-5) ... Removing med-tasks (2.0) ... Removing melting (4.3.1+dfsg-1) ... Removing menu (2.1.47) ... Removing mothur (1.33.3+dfsg-2) ... Removing muscle (1:3.8.31-1) ... Removing mustang (3.2.2-1) ... Removing mysql-common (5.5.60-0+deb8u1) ... Removing ncbi-blast+ (2.2.29-3) ... Removing ncbi-data (6.1.20120620-8) ... Removing ncbi-epcr (2.3.12-1-2) ... Removing ncoils (2002-4) ... Removing ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... Removing openmpi-common (1.6.5-9.1+deb8u1) ... Removing parsinsert (1.04-1) ... Removing xml-core (0.13+nmu2) ... Removing sgml-base (1.26+nmu4) ... Removing perl-doc (5.20.2-3+deb8u11) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing perm (0.4.0-1) ... Removing phyml (2:20120412-2) ... Removing phyutility (2.7.3-1) ... Removing pkg-config (0.28-1) ... Removing plink (1.07-3) ... Removing poa (2.0+20060928-3) ... Removing prank (0.0.140110-1) ... Removing preview-latex-style (11.87-3+deb8u1) ... Removing primer3 (2.3.6-1) ... Removing probalign (1.4-3) ... Removing probcons (1.12-9) ... Removing proda (1.0-8) ... Removing python-biopython-doc (1.64+dfsg-5) ... Removing python-decorator (3.4.0-2) ... Removing python-gobject-2 (2.28.6-12+b1) ... Removing python-htseq (0.5.4p3-2) ... Removing python-mock (1.0.1-3) ... Removing python-mpmath (0.19-1) ... Removing python-pexpect (3.2-1) ... Removing python-pkg-resources (5.5.1-1) ... Removing python-pyparsing (2.0.3+dfsg1-1) ... Removing python-pyrex (0.9.8.5-2.1) ... Removing python-reportlab (3.1.8-3+deb8u1) ... Removing python-reportlab-accel:amd64 (3.1.8-3+deb8u1) ... Removing qtcore4-l10n (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing rename (0.20-3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing rtax (0.984-2) ... Removing samtools (0.1.19-1) ... Removing sim4 (0.0.20121010-1) ... Removing t-coffee (11.00.8cbe486-1) ... Removing tcl (8.6.0+8) ... Removing tcl8.6 (8.6.2+dfsg-2) ... Removing texlive-fonts-extra-doc (2014.20141024-1) ... Removing tex-gyre (20140520-1) ... Removing texlive-font-utils (2014.20141024-1) ... Removing texlive-fonts-recommended (2014.20141024-2+deb8u1) ... Removing texlive-fonts-recommended-doc (2014.20141024-2+deb8u1) ... Removing texlive-generic-recommended (2014.20141024-2+deb8u1) ... Removing texlive-pictures (2014.20141024-2+deb8u1) ... Removing texlive-latex-recommended (2014.20141024-2+deb8u1) ... Removing texlive-latex-base (2014.20141024-2+deb8u1) ... Removing texlive-latex-base-doc (2014.20141024-2+deb8u1) ... Removing texlive-latex-recommended-doc (2014.20141024-2+deb8u1) ... Removing texlive-pictures-doc (2014.20141024-2+deb8u1) ... Removing tigr-glimmer (3.02-3) ... Removing ttf-adf-accanthis (0.20090423-2) ... Removing ttf-adf-gillius (0.20090423-2) ... Removing ttf-adf-universalis (0.20090423-2) ... Removing wise-data (2.4.1-17) ... Removing wwwconfig-common (0.2.2) ... Removing xbitmaps (1.1.1-2) ... Removing xdg-user-dirs (0.15-2) ... Removing ant (1.9.4-3) ... Removing bc (1.06.95-9) ... Removing libxml-parser-perl (2.41-3) ... Removing ghostscript (9.06~dfsg-2+deb8u7) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Removing imagemagick-common (8:6.8.9.9-5+deb8u12) ... Removing libcommons-logging-java (1.2-1) ... Removing libcommons-parent-java (22-2) ... Removing libapache-pom-java (10-2) ... Removing libgtk2.0-0:amd64 (2.24.25-3+deb8u2) ... Removing libedit2:amd64 (3.1-20140620-2) ... Removing libbsd0:amd64 (0.7.0-2) ... Removing libcdt5 (2.38.0-7) ... Removing libxft2:amd64 (2.3.2-1) ... Removing libgomp1:amd64 (4.9.2-10+deb8u1) ... Removing libgtk2.0-common (2.24.25-3+deb8u2) ... Removing texlive-base (2014.20141024-2+deb8u1) ... Removing libpaper-utils (1.1.24+nmu4) ... Removing python (2.7.9-1) ... Removing libpython-stdlib:amd64 (2.7.9-1) ... Removing python2.7 (2.7.9-2+deb8u1) ... Removing python-minimal (2.7.9-1) ... Removing python2.7-minimal (2.7.9-2+deb8u1) ... Removing libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Removing libtcl8.6:amd64 (8.6.2+dfsg-2) ... Removing mime-support (3.58) ... Removing xdg-utils (1.1.0~rc1+git20111210-7.4+deb8u1) ... Removing texlive-binaries (2014.20140926.35254-6) ... Removing libgs9 (9.06~dfsg-2+deb8u7) ... Removing libharfbuzz-icu0:amd64 (0.9.35-2) ... Removing libgs9-common (9.06~dfsg-2+deb8u7) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Removing libxmu6:amd64 (2:1.1.2-1) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Removing libicu52:amd64 (52.1-8+deb8u7) ... Removing libidn11:amd64 (1.29-1+deb8u2) ... Removing libijs-0.35:amd64 (0.35-10) ... Removing libpoppler46:amd64 (0.26.5-2+deb8u4) ... Removing libjbig2dec0 (0.13-4~deb8u2) ... Removing libptexenc1 (2014.20140926.35254-6) ... Removing libkpathsea6 (2014.20140926.35254-6) ... Removing libmpfr4:amd64 (3.1.2-2) ... Removing libopenjpeg5:amd64 (1:1.5.2-3) ... Removing libpaper1:amd64 (1.1.24+nmu4) ... Removing libpotrace0 (1.12-1+deb8u1) ... Removing libsynctex1 (2014.20140926.35254-6) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libzzip-0-13:amd64 (0.13.62-3+deb8u1) ... Removing poppler-data (0.4.7-1) ... Removing tex-common (5.03) ... Removing libgtk-3-0:amd64 (3.14.5-1+deb8u1) ... Removing libgtk-3-common (3.14.5-1+deb8u1) ... Removing adwaita-icon-theme (3.14.0-2) ... Removing libgtk-3-bin (3.14.5-1+deb8u1) ... Removing 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin' Removing 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin' Removing libwww-perl (6.08-1) ... Removing openjdk-7-jre-headless:amd64 (7u181-2.6.14-1~deb8u1) ... Removing librest-0.7-0:amd64 (0.7.92-3) ... Removing libsoup-gnome2.4-1:amd64 (2.48.0-1+deb8u1) ... Removing libsoup2.4-1:amd64 (2.48.0-1+deb8u1) ... Removing glib-networking:amd64 (2.42.0-2) ... Removing gsettings-desktop-schemas (3.14.1-1) ... Removing dconf-gsettings-backend:amd64 (0.22.0-1) ... dpkg: warning: while removing dconf-gsettings-backend:amd64, directory '/usr/lib/x86_64-linux-gnu/gio/modules' not empty so not removed Removing dconf-service (0.22.0-1) ... Removing glib-networking-services (2.42.0-2) ... Removing glib-networking-common (2.42.0-2) ... Removing hicolor-icon-theme (0.13-1) ... Removing java-common (0.52) ... Removing libpulse0:amd64 (5.0-13) ... Removing libasyncns0:amd64 (0.8-5) ... Removing libatk-bridge2.0-0:amd64 (2.14.0-2) ... Removing libatk1.0-0:amd64 (2.14.0-1) ... Removing libatk1.0-data (2.14.0-1) ... Removing libatspi2.0-0:amd64 (2.14.0-1) ... Removing libcairo-gobject2:amd64 (1.14.0-2.1+deb8u2) ... Removing libcolord2:amd64 (1.2.1-1+b2) ... Removing librsvg2-common:amd64 (2.40.5-1+deb8u2) ... Removing librsvg2-2:amd64 (2.40.5-1+deb8u2) ... Removing libcroco3:amd64 (0.6.8-3+b1) ... Removing libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Removing libdconf1:amd64 (0.22.0-1) ... Removing libhttp-negotiate-perl (6.00-2) ... Removing libwayland-cursor0:amd64 (1.6.0-2) ... Removing libwayland-client0:amd64 (1.6.0-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... Removing libflac8:amd64 (1.3.0-3) ... Removing libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u7) ... Removing libgdk-pixbuf2.0-common (2.31.1-2+deb8u7) ... Removing libhtml-tree-perl (5.03-1) ... Removing libhtml-parser-perl (3.71-1+b3) ... Removing libhtml-tagset-perl (3.20-2) ... Removing libhttp-cookies-perl (6.01-1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libio-socket-ssl-perl (2.002-2+deb8u3) ... Removing libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Removing libjson-c2:amd64 (0.11-4) ... Removing libjson-glib-1.0-0:amd64 (1.0.2-1) ... Removing libjson-glib-1.0-common (1.0.2-1) ... Removing liblcms2-2:amd64 (2.6-3+deb8u1) ... Removing libnet-http-perl (6.07-1) ... Removing libnet-ssleay-perl (1.65-1+deb8u1) ... Removing libvorbisenc2:amd64 (1.3.4-2+deb8u1) ... Removing libpcsclite1:amd64 (1.8.13-1+deb8u1) ... Removing libproxy1:amd64 (0.4.11-4+b2) ... Removing libsctp1:amd64 (1.0.16+dfsg-2) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Removing libwww-robotrules-perl (6.01-1) ... Removing libvorbis0a:amd64 (1.3.4-2+deb8u1) ... Removing libwrap0:amd64 (7.6.q-25) ... Removing libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Removing libxcomposite1:amd64 (1:0.4.4-1) ... Removing libxcursor1:amd64 (1:1.1.14-1+deb8u1) ... Removing libxdamage1:amd64 (1:1.1.4-2+b1) ... Removing libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Removing libxtst6:amd64 (2:1.2.2-1+deb8u1) ... Removing libxi6:amd64 (2:1.7.4-1+deb8u1) ... Removing libxinerama1:amd64 (2:1.1.3-1+b1) ... Removing libxkbcommon0:amd64 (0.4.3-2) ... Removing shared-mime-info (1.3-1) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Removing libxrandr2:amd64 (2:1.4.2-1+deb8u1) ... Removing netbase (5.3) ... Removing tasksel-data (3.31+deb8u1) ... Removing tzdata-java (2018e-0+deb8u1) ... Removing xkb-data (2.12-1) ... Removing ca-certificates-java (20140324) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Removing libhttp-message-perl (6.06-1) ... Removing libencode-locale-perl (1.03-1) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Removing libharfbuzz0b:amd64 (0.9.35-2) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing libhttp-date-perl (6.02-1) ... Removing libice6:amd64 (2:1.0.9-1+b1) ... Removing libio-html-perl (1.001-1) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Removing libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libnss3:amd64 (2:3.26-1+debu8u3) ... Removing libnspr4:amd64 (2:4.12-1+debu8u1) ... Removing libogg0:amd64 (1.3.2-1) ... Removing libpixman-1-0:amd64 (0.32.6-3) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing libtimedate-perl (2.3000-2) ... Removing liburi-perl (1.64-1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Removing libxext6:amd64 (2:1.3.3-1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Removing tasksel (3.31+deb8u1) ... Removing x11-common (1:7.7+7) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpango-1.0-0:amd64 (1.36.8-3) ... Removing fontconfig (2.11.0-6.3+deb8u1) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-liberation (1.07.4-1) ... Removing libcups2:amd64 (1.7.5-11+deb8u2) ... Removing libavahi-client3:amd64 (0.6.31-5) ... Removing libavahi-common3:amd64 (0.6.31-5) ... Removing libavahi-common-data:amd64 (0.6.31-5) ... Removing libthai0:amd64 (0.1.21-1) ... Removing libdatrie1:amd64 (0.2.8-1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Removing perl (5.20.2-3+deb8u11) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Removing libglib2.0-0:amd64 (2.42.1-1+b1) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing openssl (1.0.1t-1+deb8u8) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Removing libthai-data (0.1.21-1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Removing libx11-data (2:1.6.2-3+deb8u1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Removing perl-modules (5.20.2-3+deb8u11) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for dbus (1.8.22-0+deb8u1) ... Processing triggers for udev (215-17+deb8u7) ... 13m58.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', 'remove', 'java-common', 'texlive-latex-base', 'texlive-pictures', 'libv4lconvert0:amd64', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libbytecode-java', 'python-scipy', 'python-dateutil', 'libv4l-0:amd64', 'libyaml-perl', 'texlive-latex-base-doc', 'libelf1:amd64', 'emboss', 'libjzlib-java', 'libpangoxft-1.0-0:amd64', 'cython', 'libopenexr6:amd64', 'libmodule-implementation-perl', 'libargtable2-0', 'libtiff5:amd64', 'libmagickcore5-extra:amd64', 'fonts-gfs-complutum', 'libclass-c3-perl', 'libutempter0', 'libcairo-gobject2:amd64', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libdom4j-java', 'libmro-compat-perl', 'liblsan0:amd64', 'libxdamage1:amd64', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'dmidecode', 'libpq5:amd64', 'libboost-system1.55.0:amd64', 'libtext-template-perl', 'ufraw-batch', 'cgmanager', 'liblwp-protocol-https-perl', 'libmath-vecstat-perl', 'libfile-listing-perl', 'libgd-graph-perl', 'smalt', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'fonts-gfs-didot', 'libatk1.0-0:amd64', 'fonts-oflb-asana-math', 'libmath-spline-perl', 'libgflags2', 'libsane:amd64', 'libzzip-0-13:amd64', 'fonts-lobster', 'libxml-sax-perl', 'libasan1:amd64', 'dialign-tx', 'libstrictures-perl', 'libmng1:amd64', 'libxml-commons-external-java', 'dialign', 'libsub-install-perl', 'imagemagick-6.q16', 'libpod-coverage-perl', 'libclone-perl', 'libpopt0:amd64', 'libhtml-tableextract-perl', 'libdrm2:amd64', 'libdbd-pg-perl', 'libcommons-net2-java', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libcommons-lang-java', 'libpython-dev:amd64', 'lua-md5:amd64', 'tipa', 'libboost-serialization1.55.0:amd64', 'libdns-export100', 'libgmp10:amd64', 'policykit-1', 'libtxc-dxtn-s2tc0:amd64', 'libgd3:amd64', 'libgsl0ldbl', 'libhtml-format-perl', 'last-align', 'mafft', 'libossp-uuid-perl', 'libfreecontact0', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'python2.7', 'libasyncns0:amd64', 'junit4', 'libjbzip2-java', 'libipc-sharelite-perl', 'libfont-ttf-perl', 'libpolkit-agent-1-0:amd64', 'libgl1-mesa-glx:amd64', 'libmsv-java', 'python-minimal', 'manpages-dev', 'fonts-texgyre', 'libxft2:amd64', 'autogrid', 'libatomic1:amd64', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'liblcms1:amd64', 'fonts-junicode', 'picard-tools', 'python-pysam', 'bioperl-run', 'libgudev-1.0-0:amd64', 'libhtml-tagset-perl', 'libyaml-tiny-perl', 'clearcut', 'genometools', 'plink', 'libapr1:amd64', 'ampliconnoise', 'altree', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'liboro-java', 'texlive-binaries', 'python2.6-minimal', 'libset-intspan-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'init-system-helpers', 'libclass-isa-perl', 'x11-xserver-utils', 'libcupsimage2:amd64', 'libxpp2-java', 'perm', 'libdigest-perl-md5-perl', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'libgtk2.0-0:amd64', 'dconf-service', 'libdb5.1:amd64', 'xkb-data', 'libtasn1-6:amd64', 'discosnp', 'libnet-smtp-ssl-perl', 'python-cairo', 'libfreezethaw-perl', 'libhamcrest-java', 'libnspr4:amd64', 'libfile-slurp-tiny-perl', 'gcc-4.9', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'fonts-crosextra-carlito', 'libwww-robotrules-perl', 'libxcb-dri3-0:amd64', 'libkrb5-3:amd64', 'libstdc++-4.9-dev:amd64', 'libjpeg62-turbo:amd64', 'libmail-java', 'libtsan0:amd64', 'libarchive-extract-perl', 'disulfinder', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'ncbi-tools-bin', 'libpython2.7-minimal:amd64', 'proda', 'libpixman-1-0:amd64', 'gsettings-desktop-schemas', 'bedtools', 'openjdk-7-jre:amd64', 'python-glade2', 'liblapack3', 'gcc', 'primer3', 'python-pexpect', 'texlive-latex-recommended', 'fastx-toolkit', 'libxxf86dga1:amd64', 'libcloog-isl4:amd64', 'fonts-lmodern', 'libjasper1:amd64', 'libmodule-signature-perl', 'liburi-perl', 'libmodule-runtime-perl', 'maq', 'libpcsclite1:amd64', 'libxxf86vm1:amd64', 'libasound2-data', 'libtbb2', 'libxslt1.1:amd64', 'mothur', 'libgphoto2-port10:amd64', 'libsane-common', 'liblensfun-data', 'texlive-fonts-recommended', 'libpotrace0', 'libgraphics-colorobject-perl', 'libmultidimensional-perl', 'libwmf0.2-7:amd64', 'libwrap0:amd64', 'libidn11:amd64', 'fastlink', 'aevol', 'libxml-libxslt-perl', 'fonts-comfortaa', 'med-config', 'fonts-liberation', 'libkrb5support0:amd64', 'libmath-vec-perl', 'fonts-sil-gentium-basic', 'libptexenc1', 'python-biopython', 'python-matplotlib', 'libgdk-pixbuf2.0-0:amd64', 'systemd-shim', 'libnet-ssleay-perl', 'fitgcp', 'libglpk36:amd64', 'biomaj', 'fonts-dejavu-core', 'python2.7-dev', 'libfreetype6:amd64', 'libjson-glib-1.0-common', 'python-support', 'libjs-jquery', 'fonts-freefont-ttf', 'libgphoto2-l10n', 'fonts-crosextra-caladea', 'libatk-wrapper-java', 'libcilkrts5:amd64', 'libbio-asn1-entrezgene-perl', 'texlive-latex-extra-doc', 'datamash', 'libssl1.0.0:amd64', 'libnettle4:amd64', 'python-gmpy', 'ocl-icd-libopencl1:amd64', 'concavity', 'libcommons-math3-java', 'ipython', 'libmysql-java', 'libjcommon-java', 'prosper', 'libmpc3:amd64', 'python', 'libieee1284-3:amd64', 'libio-html-perl', 'libpython2.7:amd64', 'autodock', 'libgtk2.0-common', 'libpoppler-qt4-4:amd64', 'glpk-utils', 'libp11-kit0:amd64', 'libyaml-libyaml-perl', 'libblas3', 'python-pyrex', 'libservlet2.5-java', 'libcgmanager0:amd64', 'rnahybrid', 'libcr0', 'libthai0:amd64', 'med-tasks', 'python-tk', 'python-wxversion', 'libexiv2-13:amd64', 'libxerces2-java', 'libcommons-dbcp-java', 'openmpi-common', 'texlive-pictures-doc', 'ssake', 'hmmer', 'libk5crypto3:amd64', 'python-tz', 'dconf-gsettings-backend:amd64', 'fonts-freefont-otf', 'libdconf1:amd64', 'libwxbase3.0-0:amd64', 'libmagic1:amd64', 'python-imaging', 'libfile-homedir-perl', 'libcommons-jexl2-java', 'libjdom1-java', 'blt', 'libmath-derivative-perl', 'libdrm-nouveau2:amd64', 'fonts-cmu', 'libxml-sax-base-perl', 'liblog4j1.2-java', 'fonts-circos-symbols', 'libharfbuzz-icu0:amd64', 'fonts-cabin', 'libcommons-parent-java', 'poppler-data', 'dvipng', 'openmpi-bin', 'libgraph-perl', 'wwwconfig-common', 'at-spi2-core', 'fonts-dejavu-extra', 'libcpan-meta-perl', 'cd-hit', 'libjsch-java', 'idba', 'adwaita-icon-theme', 'libwebpdemux1:amd64', 'dialign-tx-data', 'liblensfun0', 'libnotify4:amd64', 'libilmbase6:amd64', 'libclass-inspector-perl', 'libvorbis0a:amd64', 'libboost-thread1.55.0:amd64', 'libmagickcore5:amd64', 'openssl', 'seqan-apps', 'fontconfig-config', 'libxinerama1:amd64', 'libconfig-general-perl', 'fonts-gfs-artemisia', 'cain', 'libisorelax-java', 'libio-socket-ssl-perl', 'libgoogle-glog0', 'libgcc-4.9-dev:amd64', 'libhwloc-plugins', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libgraphics-colornames-perl', 'glib-networking:amd64', 'libmysqlclient18:amd64', 'libgusb2:amd64', 'libdata-section-perl', 'cpp-4.9', 'libxml-simple-perl', 'bamtools', 'libgtk2.0-bin', 'prank', 'libalgorithm-diff-xs-perl', 'libgetopt-simple-perl', 'tasksel-data', 'lua-lpeg:amd64', 'mira-assembler', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'libxss1:amd64', 'bowtie2', 'libgraphviz-perl', 'python-mock', 'libtcl8.6:amd64', 'mapsembler2', 'libnss3:amd64', 'texlive-latex-extra', 'libnetpbm10', 'libhttp-cookies-perl', 'libfcgi-perl', 'python-simplegeneric', 'libmodule-pluggable-perl', 'libgtk-3-0:amd64', 'python-renderpm:amd64', 'python-matplotlib-data', 'ncbi-blast+', 'default-jre-headless', 'libncbi6:amd64', 'libatk-wrapper-java-jni:amd64', 'libwebp5:amd64', 'libgvpr2', 'libqtgui4:amd64', 'alien-hunter', 'phyml', 'tophat', 'clustalo', 'libproxy1:amd64', 'libdate-calc-perl', 'hicolor-icon-theme', 'libboost-iostreams1.55.0:amd64', 'libglade2-0:amd64', 'ant', 'loki', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'tk8.6', 'texlive-fonts-extra', 'libdrm-radeon1:amd64', 'libjcode-pm-perl', 'libhsqldb-java', 'rtax', 'libimport-into-perl', 'libpathplan4', 'libwayland-cursor0:amd64', 'libparse-recdescent-perl', 'lua-filesystem:amd64', 'libpadwalker-perl', 'libnet-http-perl', 'texlive-font-utils', 'ncbi-epcr', 'python-mpmath', 'libboost-regex1.55.0:amd64', 'libatk1.0-data', 'macs', 'libisccfg-export90', 'libperl4-corelibs-perl', 'libcanberra-gtk3-0:amd64', 'sane-utils', 'iproute2', 'libatspi2.0-0:amd64', 'libhwloc5:amd64', 'krb5-locales', 'python-reportlab-accel:amd64', 'exonerate', 'libexif12:amd64', 'libio-all-perl', 'libtamuanova-0.2', 'libjsoncpp0', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'libgdk-pixbuf2.0-common', 'amap-align', 'libnuma1:amd64', 'libmagickwand5:amd64', 'ttf-adf-universalis', 'libsvg-graph-perl', 'linux-libc-dev:amd64', 'libparams-util-perl', 'fonts-linuxlibertine', 'libdata-dumper-simple-perl', 'libxcb-shape0:amd64', 'colord', 'libcolord2:amd64', 'fastqc', 'libcofoja-java', 'texlive-fonts-recommended-doc', 'libsub-exporter-perl', 'biosquid', 'iproute', 'mysql-common', 'python-nose', 'libterm-ui-perl', 'freecontact', 'libsasl2-modules:amd64', 'liblog-message-perl', 'libxml-dom-perl', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'menu', 'libaxis-java', 'libdrm-intel1:amd64', 'libgdbm3:amd64', 'fontconfig', 'libcanberra-gtk3-module:amd64', 'libace-perl', 'libxml-sax-expat-perl', 'fonts-font-awesome', 'python-gobject-2', 'infernal', 'libclass-c3-xs-perl', 'libpciaccess0:amd64', 'flexbar', 'ncoils', 'libtk8.6:amd64', 'libalgorithm-c3-perl', 'mysql-client-5.5', 'clustalw', 'libglib2.0-0:amd64', 'libcommons-collections3-java', 'lksctp-tools', 'graphviz', 'libxext6:amd64', 'libusb-1.0-0:amd64', 'libbsd0:amd64', 'libfftw3-double3:amd64', 'libxmuu1:amd64', 'libmagickwand-6.q16-2:amd64', 'libart-2.0-2:amd64', 'libxml-namespacesupport-perl', 'libfile-mimeinfo-perl', 'sgml-base', 'libcommons-httpclient-java', 'libcommons-logging-java', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'autodock-vina', 'libfile-basedir-perl', 'fonts-gfs-olga', 'tex-common', 'libxerces-c3.1:amd64', 'libmath-round-perl', 'libgtextutils0:amd64', 'gsfonts', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'texlive-extra-utils', 'libllvm3.5:amd64', 'libjpeg8:amd64', 'libqt4-xml:amd64', 'libmath-random-mt-perl', 'python-htseq', 'libjson-glib-1.0-0:amd64', 'python-biopython-doc', 'libbamtools2.3.0', 'libtype-tiny-xs-perl', 'emboss-lib', 'python-pyglet', 'libswitch-perl', 'anfo', 'libpod-readme-perl', 'libsaxonb-java', 'blast2', 'libpolkit-backend-1-0:amd64', 'g++', 'libgif4:amd64', 'libelfg0:amd64', 'libio-sessiondata-perl', 'ant-contrib', 'libdevel-symdump-perl', 'libparams-validate-perl', 'qtcore4-l10n', 'xdg-utils', 'libopenjpeg5:amd64', 'libhtml-parser-perl', 'imagemagick', 'glib-networking-common', 'libthai-data', 'libhttp-message-perl', 'wise-data', 'libdata-stag-perl', 'libdate-manip-perl', 'python2.6', 'libgnutls-deb0-28:amd64', 'libheap-perl', 'libflac8:amd64', 'dnaclust', 'libpangox-1.0-0:amd64', 'mime-support', 'libicu52:amd64', 'libpango1.0-0:amd64', 'cain-examples', 'libgtk-3-bin', 'libjs-jquery-ui', 'python-gtk2', 'libcanberra0:amd64', 'libitm1:amd64', 'ncbi-data', 'libaudio2:amd64', 'ps2eps', 'libwebpmux1:amd64', 'circos-tools', 'perl-tk', 'binutils', 'libbit-vector-perl', 'libdatrie1:amd64', 'libxcb-present0:amd64', 'libx11-data', 'libg20', 'cassiopee', 'openjdk-7-jre-headless:amd64', 'python-wxgtk3.0', 'libglapi-mesa:amd64', 'libmath-bezier-perl', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libsam-java', 'libfontconfig1:amd64', 'libgphoto2-6:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libxrandr2:amd64', 'libdevel-globaldestruction-perl', 'libatlas3-base', 'libcommons-codec-java', 'libamd2.3.1:amd64', 'libhttp-negotiate-perl', 'glib-networking-services', 'libtcmalloc-minimal4', 'libblas-common', 'libmpfr4:amd64', 'lmodern', 'libmagickcore-6.q16-2:amd64', 'libpaper-utils', 'libxcb-glx0:amd64', 'libpod-latex-perl', 'prerex', 'libwxgtk3.0-0:amd64', 'libipc-run-perl', 'python-numpy', 'libhtml-form-perl', 'libreadonly-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'sim4', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxt6:amd64', 'kalign', 'libffi6:amd64', 'libijs-0.35:amd64', 'fastdnaml', 'libsane-extras:amd64', 'netpbm', 'python-all', 'libpth20:amd64', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'libqtcore4:amd64', 'rename', 'libsub-exporter-progressive-perl', 'vprerex', 'texlive-base', 'libubsan0:amd64', 'libglpk-java', 'libffi5:amd64', 'libeigen3-dev', 'libgl1-mesa-dri:amd64', 'libxml-xpath-perl', 'libkpathsea6', 'libindirect-perl', 'libsctp1:amd64', 'libxml-regexp-perl', 'libharfbuzz0b:amd64', 'samtools', 'libxtables10', 'grinder', 'libcommons-discovery-java', 'probalign', 'python-decorator', 'libjets3t-java', 'poa', 'libboost-filesystem1.55.0:amd64', 'fonts-gfs-solomos', 'libio-pty-perl', 'tex-gyre', 'libgvc6', 'libpango-1.0-0:amd64', 'libcrypt-rc4-perl', 'libjs-underscore', 'libcgraph6', 'libx11-xcb1:amd64', 'libibverbs1', 'libsasl2-modules-db:amd64', 'arden', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'manpages', 'libsoup-gnome2.4-1:amd64', 'libirs-export91', 'libxpm4:amd64', 'tk8.6-blt2.5', 'javascript-common', 'libgtk-3-common', 'liblist-moreutils-perl', 'circos', 'libwsdl4j-java', 'libgetopt-euclid-perl', 'libhttp-date-perl', 'python2.7-minimal', 'preview-latex-style', 'mipe', 'libcups2:amd64', 'libregexp-java', 'librsvg2-2:amd64', 'muscle', 'libexporter-tiny-perl', 'libpoppler46:amd64', 'python-all-dev', 'laptop-detect', 'librsvg2-common:amd64', 'libwayland-client0:amd64', 'texlive-pstricks-doc', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'tcl', 'libmailtools-perl', 'fonts-gfs-neohellenic', 't-coffee', 'clonalframe', 'libtext-format-perl', 'kissplice', 'librelaxng-datatype-java', 'libunwind8', 'gasic', 'libtiff4:amd64', 'libmodule-build-perl', 'libpulse0:amd64', 'libsm6:amd64', 'libnih1', 'libxom-java', 'texlive-generic-recommended', 'libxcb1:amd64', 'fonts-lato', 'libc6-dev:amd64', 'raster3d', 'libtype-tiny-perl', 'ttf-adf-accanthis', 'libxml-sax-writer-perl', 'libdjvulibre-text', 'fonts-ebgaramond-extra', 'libbareword-filehandles-perl', 'xterm', 'libsoftware-license-perl', 'libapache2-mod-perl2', 'libjgoodies-forms-java', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'libterm-readkey-perl', 'libxpp3-java', 'python-pkg-resources', 'libcolorhug2:amd64', 'tcl8.6', 'apache2-bin', 'melting', 'libsystemd-login0:amd64', 'libedit2:amd64', 'parsinsert', 'libgd-text-perl', 'g++-4.9', 'libcolamd2.8.0:amd64', 'xbitmaps', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'libelk0', 'shared-mime-info', 'libxml2:amd64', 'libbambamc0', 'libsoap-lite-perl', 'libtdb1:amd64', 'libxi6:amd64', 'libxcb-shm0:amd64', 'libxml-filter-buffertext-perl', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libtree-dagnode-perl', 'libalgorithm-munkres-perl', 'libxml-writer-perl', 'mustang', 'libsynctex1', 'fonts-stix', 'cain-solvers', 'libgomp1:amd64', 'ant-optional', 'giira', 'libpython-all-dev:amd64', 'libsndfile1:amd64', 'libfontenc1:amd64', 'libprotobuf9:amd64', 'libxtst6:amd64', 'libperl5.20', 'libparams-classify-perl', 'phyutility', 'libsqlite3-0:amd64', 'fonts-inconsolata', 'blends-common', 'libcroco3:amd64', 'libxml-twig-perl', 'bc', 'libjson-c2:amd64', 'libxdmcp6:amd64', 'libexiv2-12', 'libcommons-pool-java', 'tasksel', 'libasound2:amd64', 'libxkbcommon0:amd64', 'fonts-sil-gentium', 'libcgi-fast-perl', 'python-reportlab', 'libfile-which-perl', 'probcons', 'libxml-parser-perl', 'libcommons-cli-java', 'libxcomposite1:amd64', 'imagemagick-common', 'fonts-ebgaramond', 'libjbig2dec0', 'ca-certificates-java', 'libsoup2.4-1:amd64', 'libregexp-common-perl', 'colord-data', 'pkg-config', 'liblqr-1-0:amd64', 'libgs9', 'libatk-bridge2.0-0:amd64', 'libapache-pom-java', 'libxml-perl', 'libpostscript-perl', 'tcpd', 'libpython2.7-dev:amd64', 'libsane-extras-common', 'genometools-common', 'xml-core', 'libtie-ixhash-perl', 'libfile-copy-recursive-perl', 'perl', 'libatm1:amd64', 'fonts-lyx', 'libxv1:amd64', 'librest-0.7-0:amd64', 'libxshmfence1:amd64', 'libhttp-daemon-perl', 'notification-daemon', 'ruby2.1', 'x11-common', 'libfile-desktopentry-perl', 'libperlio-gzip-perl', 'liblua5.1-0:amd64', 'netbase', 'update-inetd', 'libbcprov-java', 'libxrender1:amd64', 'python-sympy', 'libxaw7:amd64', 'libjbig0:amd64', 'libbio-perl-run-perl', 'texlive-pstricks', 'libxml-commons-resolver1.1-java', 'bwa', 'libtask-weaken-perl', 'python-cogent', 'librole-tiny-perl', 'cdbfasta', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'python-six', 'libbiojava1.7-java', 'libdjvulibre21:amd64', 'libnet-dbus-perl', 'python-pil:amd64', 'libxcursor1:amd64', 'libgd-perl', 'libbiojava-java', 'libpolkit-gobject-1-0:amd64', 'libio-string-perl', 'tigr-glimmer', 'boxshade', 'libxau6:amd64', 'libcassie1', 'libclass-method-modifiers-perl', 'libmath-tamuanova-perl', 'x11-utils', 'libjava-xmlbuilder-java', 'libmagickcore-6.q16-2-extra:amd64', 'tk', 'ifupdown', 'libexpat1-dev:amd64', 'python-pyparsing', 'libunicode-map-perl', 'libopenmpi1.6', 'libaprutil1:amd64', 'texlive-latex-recommended-doc', 'libxcb-sync1:amd64', 'texlive-fonts-extra-doc', 'fonts-lobstertwo', 'libjaxen-java', 'file', 'ttf-adf-gillius', 'liblist-allutils-perl', 'filo', 'libgfortran3:amd64', 'python-dev', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'libspiffy-perl', 'libnih-dbus1', 'libx11-protocol-perl', 'default-jre', 'libtest-pod-perl', 'libxfixes3:amd64', 'minia', 'emboss-data', 'libbsd-resource-perl', 'libtimedate-perl', 'libwww-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'mysql-client', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libalgorithm-diff-perl', 'libvorbisenc2:amd64', 'libxcb-dri2-0:amd64', 'fasttree', 'libvorbisfile3:amd64', 'libbio-perl-perl', 'acedb-other', 'libsvg-perl', 'libboost-program-options1.55.0:amd64', 'libdevel-caller-perl', 'libtre5:amd64', 'velvet', 'libquadmath0:amd64', 'aragorn', 'libdbd-mysql-perl', 'libsort-naturally-perl', 'libisl10:amd64', 'disulfinder-data', 'libset-scalar-perl', 'libogg0:amd64', 'libyaml-0-2:amd64', 'libsasl2-2:amd64', 'lynx', 'libcdt5', 'libcarp-always-perl', 'libjgoodies-common-java', 'libanfo0', 'libc-dev-bin', 'cpp', 'tzdata-java', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl', 'dssp', 'med-cloud'] 13m58.4s INFO: Running scripts post_remove 13m58.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_remove_exceptions'] 13m58.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_remove_exceptions'] 13m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_remove_extras'] 13m58.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_remove_extras'] 13m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg', '--purge', 'java-common', 'texlive-latex-base', 'texlive-pictures', 'libv4lconvert0:amd64', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libbytecode-java', 'python-scipy', 'python-dateutil', 'libv4l-0:amd64', 'libyaml-perl', 'texlive-latex-base-doc', 'libelf1:amd64', 'emboss', 'libjzlib-java', 'libpangoxft-1.0-0:amd64', 'cython', 'libopenexr6:amd64', 'libmodule-implementation-perl', 'libargtable2-0', 'libtiff5:amd64', 'libmagickcore5-extra:amd64', 'fonts-gfs-complutum', 'libclass-c3-perl', 'libutempter0', 'libcairo-gobject2:amd64', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libdom4j-java', 'libmro-compat-perl', 'liblsan0:amd64', 'libxdamage1:amd64', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'dmidecode', 'libpq5:amd64', 'libboost-system1.55.0:amd64', 'libtext-template-perl', 'ufraw-batch', 'cgmanager', 'liblwp-protocol-https-perl', 'libmath-vecstat-perl', 'libfile-listing-perl', 'libgd-graph-perl', 'smalt', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'fonts-gfs-didot', 'libatk1.0-0:amd64', 'fonts-oflb-asana-math', 'libmath-spline-perl', 'libgflags2', 'libsane:amd64', 'libzzip-0-13:amd64', 'fonts-lobster', 'libxml-sax-perl', 'libasan1:amd64', 'dialign-tx', 'libstrictures-perl', 'libmng1:amd64', 'libxml-commons-external-java', 'dialign', 'libsub-install-perl', 'imagemagick-6.q16', 'libpod-coverage-perl', 'libclone-perl', 'libpopt0:amd64', 'libhtml-tableextract-perl', 'libdrm2:amd64', 'libdbd-pg-perl', 'libcommons-net2-java', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libcommons-lang-java', 'libpython-dev:amd64', 'lua-md5:amd64', 'tipa', 'libboost-serialization1.55.0:amd64', 'libdns-export100', 'libgmp10:amd64', 'policykit-1', 'libtxc-dxtn-s2tc0:amd64', 'libgd3:amd64', 'libgsl0ldbl', 'libhtml-format-perl', 'last-align', 'mafft', 'libossp-uuid-perl', 'libfreecontact0', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'python2.7', 'libasyncns0:amd64', 'junit4', 'libjbzip2-java', 'libipc-sharelite-perl', 'libfont-ttf-perl', 'libpolkit-agent-1-0:amd64', 'libgl1-mesa-glx:amd64', 'libmsv-java', 'python-minimal', 'manpages-dev', 'fonts-texgyre', 'libxft2:amd64', 'autogrid', 'libatomic1:amd64', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'liblcms1:amd64', 'fonts-junicode', 'picard-tools', 'python-pysam', 'bioperl-run', 'libgudev-1.0-0:amd64', 'libhtml-tagset-perl', 'libyaml-tiny-perl', 'clearcut', 'genometools', 'plink', 'libapr1:amd64', 'ampliconnoise', 'altree', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'liboro-java', 'texlive-binaries', 'python2.6-minimal', 'libset-intspan-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'init-system-helpers', 'libclass-isa-perl', 'x11-xserver-utils', 'libcupsimage2:amd64', 'libxpp2-java', 'perm', 'libdigest-perl-md5-perl', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'libgtk2.0-0:amd64', 'dconf-service', 'libdb5.1:amd64', 'xkb-data', 'libtasn1-6:amd64', 'discosnp', 'libnet-smtp-ssl-perl', 'python-cairo', 'libfreezethaw-perl', 'libhamcrest-java', 'libnspr4:amd64', 'libfile-slurp-tiny-perl', 'gcc-4.9', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'fonts-crosextra-carlito', 'libwww-robotrules-perl', 'libxcb-dri3-0:amd64', 'libkrb5-3:amd64', 'libstdc++-4.9-dev:amd64', 'libjpeg62-turbo:amd64', 'libmail-java', 'libtsan0:amd64', 'libarchive-extract-perl', 'disulfinder', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'ncbi-tools-bin', 'libpython2.7-minimal:amd64', 'proda', 'libpixman-1-0:amd64', 'gsettings-desktop-schemas', 'bedtools', 'openjdk-7-jre:amd64', 'python-glade2', 'liblapack3', 'gcc', 'primer3', 'python-pexpect', 'texlive-latex-recommended', 'fastx-toolkit', 'libxxf86dga1:amd64', 'libcloog-isl4:amd64', 'fonts-lmodern', 'libjasper1:amd64', 'libmodule-signature-perl', 'liburi-perl', 'libmodule-runtime-perl', 'maq', 'libpcsclite1:amd64', 'libxxf86vm1:amd64', 'libasound2-data', 'libtbb2', 'libxslt1.1:amd64', 'mothur', 'libgphoto2-port10:amd64', 'libsane-common', 'liblensfun-data', 'texlive-fonts-recommended', 'libpotrace0', 'libgraphics-colorobject-perl', 'libmultidimensional-perl', 'libwmf0.2-7:amd64', 'libwrap0:amd64', 'libidn11:amd64', 'fastlink', 'aevol', 'libxml-libxslt-perl', 'fonts-comfortaa', 'med-config', 'fonts-liberation', 'libkrb5support0:amd64', 'libmath-vec-perl', 'fonts-sil-gentium-basic', 'libptexenc1', 'python-biopython', 'python-matplotlib', 'libgdk-pixbuf2.0-0:amd64', 'systemd-shim', 'libnet-ssleay-perl', 'fitgcp', 'libglpk36:amd64', 'biomaj', 'fonts-dejavu-core', 'python2.7-dev', 'libfreetype6:amd64', 'libjson-glib-1.0-common', 'python-support', 'libjs-jquery', 'fonts-freefont-ttf', 'libgphoto2-l10n', 'fonts-crosextra-caladea', 'libatk-wrapper-java', 'libcilkrts5:amd64', 'libbio-asn1-entrezgene-perl', 'texlive-latex-extra-doc', 'datamash', 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'libxml-sax-base-perl', 'liblog4j1.2-java', 'fonts-circos-symbols', 'libharfbuzz-icu0:amd64', 'fonts-cabin', 'libcommons-parent-java', 'poppler-data', 'dvipng', 'openmpi-bin', 'libgraph-perl', 'wwwconfig-common', 'at-spi2-core', 'fonts-dejavu-extra', 'libcpan-meta-perl', 'cd-hit', 'libjsch-java', 'idba', 'adwaita-icon-theme', 'libwebpdemux1:amd64', 'dialign-tx-data', 'liblensfun0', 'libnotify4:amd64', 'libilmbase6:amd64', 'libclass-inspector-perl', 'libvorbis0a:amd64', 'libboost-thread1.55.0:amd64', 'libmagickcore5:amd64', 'openssl', 'seqan-apps', 'fontconfig-config', 'libxinerama1:amd64', 'libconfig-general-perl', 'fonts-gfs-artemisia', 'cain', 'libisorelax-java', 'libio-socket-ssl-perl', 'libgoogle-glog0', 'libgcc-4.9-dev:amd64', 'libhwloc-plugins', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libgraphics-colornames-perl', 'glib-networking:amd64', 'libmysqlclient18:amd64', 'libgusb2:amd64', 'libdata-section-perl', 'cpp-4.9', 'libxml-simple-perl', 'bamtools', 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'libimport-into-perl', 'libpathplan4', 'libwayland-cursor0:amd64', 'libparse-recdescent-perl', 'lua-filesystem:amd64', 'libpadwalker-perl', 'libnet-http-perl', 'texlive-font-utils', 'ncbi-epcr', 'python-mpmath', 'libboost-regex1.55.0:amd64', 'libatk1.0-data', 'macs', 'libisccfg-export90', 'libperl4-corelibs-perl', 'libcanberra-gtk3-0:amd64', 'sane-utils', 'iproute2', 'libatspi2.0-0:amd64', 'libhwloc5:amd64', 'krb5-locales', 'python-reportlab-accel:amd64', 'exonerate', 'libexif12:amd64', 'libio-all-perl', 'libtamuanova-0.2', 'libjsoncpp0', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'libgdk-pixbuf2.0-common', 'amap-align', 'libnuma1:amd64', 'libmagickwand5:amd64', 'ttf-adf-universalis', 'libsvg-graph-perl', 'linux-libc-dev:amd64', 'libparams-util-perl', 'fonts-linuxlibertine', 'libdata-dumper-simple-perl', 'libxcb-shape0:amd64', 'colord', 'libcolord2:amd64', 'fastqc', 'libcofoja-java', 'texlive-fonts-recommended-doc', 'libsub-exporter-perl', 'biosquid', 'iproute', 'mysql-common', 'python-nose', 'libterm-ui-perl', 'freecontact', 'libsasl2-modules:amd64', 'liblog-message-perl', 'libxml-dom-perl', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'menu', 'libaxis-java', 'libdrm-intel1:amd64', 'libgdbm3:amd64', 'fontconfig', 'libcanberra-gtk3-module:amd64', 'libace-perl', 'libxml-sax-expat-perl', 'fonts-font-awesome', 'python-gobject-2', 'infernal', 'libclass-c3-xs-perl', 'libpciaccess0:amd64', 'flexbar', 'ncoils', 'libtk8.6:amd64', 'libalgorithm-c3-perl', 'mysql-client-5.5', 'clustalw', 'libglib2.0-0:amd64', 'libcommons-collections3-java', 'lksctp-tools', 'graphviz', 'libxext6:amd64', 'libusb-1.0-0:amd64', 'libbsd0:amd64', 'libfftw3-double3:amd64', 'libxmuu1:amd64', 'libmagickwand-6.q16-2:amd64', 'libart-2.0-2:amd64', 'libxml-namespacesupport-perl', 'libfile-mimeinfo-perl', 'sgml-base', 'libcommons-httpclient-java', 'libcommons-logging-java', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'autodock-vina', 'libfile-basedir-perl', 'fonts-gfs-olga', 'tex-common', 'libxerces-c3.1:amd64', 'libmath-round-perl', 'libgtextutils0:amd64', 'gsfonts', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'texlive-extra-utils', 'libllvm3.5:amd64', 'libjpeg8:amd64', 'libqt4-xml:amd64', 'libmath-random-mt-perl', 'python-htseq', 'libjson-glib-1.0-0:amd64', 'python-biopython-doc', 'libbamtools2.3.0', 'libtype-tiny-xs-perl', 'emboss-lib', 'python-pyglet', 'libswitch-perl', 'anfo', 'libpod-readme-perl', 'libsaxonb-java', 'blast2', 'libpolkit-backend-1-0:amd64', 'g++', 'libgif4:amd64', 'libelfg0:amd64', 'libio-sessiondata-perl', 'ant-contrib', 'libdevel-symdump-perl', 'libparams-validate-perl', 'qtcore4-l10n', 'xdg-utils', 'libopenjpeg5:amd64', 'libhtml-parser-perl', 'imagemagick', 'glib-networking-common', 'libthai-data', 'libhttp-message-perl', 'wise-data', 'libdata-stag-perl', 'libdate-manip-perl', 'python2.6', 'libgnutls-deb0-28:amd64', 'libheap-perl', 'libflac8:amd64', 'dnaclust', 'libpangox-1.0-0:amd64', 'mime-support', 'libicu52:amd64', 'libpango1.0-0:amd64', 'cain-examples', 'libgtk-3-bin', 'libjs-jquery-ui', 'python-gtk2', 'libcanberra0:amd64', 'libitm1:amd64', 'ncbi-data', 'libaudio2:amd64', 'ps2eps', 'libwebpmux1:amd64', 'circos-tools', 'perl-tk', 'binutils', 'libbit-vector-perl', 'libdatrie1:amd64', 'libxcb-present0:amd64', 'libx11-data', 'libg20', 'cassiopee', 'openjdk-7-jre-headless:amd64', 'python-wxgtk3.0', 'libglapi-mesa:amd64', 'libmath-bezier-perl', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libsam-java', 'libfontconfig1:amd64', 'libgphoto2-6:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libxrandr2:amd64', 'libdevel-globaldestruction-perl', 'libatlas3-base', 'libcommons-codec-java', 'libamd2.3.1:amd64', 'libhttp-negotiate-perl', 'glib-networking-services', 'libtcmalloc-minimal4', 'libblas-common', 'libmpfr4:amd64', 'lmodern', 'libmagickcore-6.q16-2:amd64', 'libpaper-utils', 'libxcb-glx0:amd64', 'libpod-latex-perl', 'prerex', 'libwxgtk3.0-0:amd64', 'libipc-run-perl', 'python-numpy', 'libhtml-form-perl', 'libreadonly-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'sim4', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxt6:amd64', 'kalign', 'libffi6:amd64', 'libijs-0.35:amd64', 'fastdnaml', 'libsane-extras:amd64', 'netpbm', 'python-all', 'libpth20:amd64', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'libqtcore4:amd64', 'rename', 'libsub-exporter-progressive-perl', 'vprerex', 'texlive-base', 'libubsan0:amd64', 'libglpk-java', 'libffi5:amd64', 'libeigen3-dev', 'libgl1-mesa-dri:amd64', 'libxml-xpath-perl', 'libkpathsea6', 'libindirect-perl', 'libsctp1:amd64', 'libxml-regexp-perl', 'libharfbuzz0b:amd64', 'samtools', 'libxtables10', 'grinder', 'libcommons-discovery-java', 'probalign', 'python-decorator', 'libjets3t-java', 'poa', 'libboost-filesystem1.55.0:amd64', 'fonts-gfs-solomos', 'libio-pty-perl', 'tex-gyre', 'libgvc6', 'libpango-1.0-0:amd64', 'libcrypt-rc4-perl', 'libjs-underscore', 'libcgraph6', 'libx11-xcb1:amd64', 'libibverbs1', 'libsasl2-modules-db:amd64', 'arden', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'manpages', 'libsoup-gnome2.4-1:amd64', 'libirs-export91', 'libxpm4:amd64', 'tk8.6-blt2.5', 'javascript-common', 'libgtk-3-common', 'liblist-moreutils-perl', 'circos', 'libwsdl4j-java', 'libgetopt-euclid-perl', 'libhttp-date-perl', 'python2.7-minimal', 'preview-latex-style', 'mipe', 'libcups2:amd64', 'libregexp-java', 'librsvg2-2:amd64', 'muscle', 'libexporter-tiny-perl', 'libpoppler46:amd64', 'python-all-dev', 'laptop-detect', 'librsvg2-common:amd64', 'libwayland-client0:amd64', 'texlive-pstricks-doc', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'tcl', 'libmailtools-perl', 'fonts-gfs-neohellenic', 't-coffee', 'clonalframe', 'libtext-format-perl', 'kissplice', 'librelaxng-datatype-java', 'libunwind8', 'gasic', 'libtiff4:amd64', 'libmodule-build-perl', 'libpulse0:amd64', 'libsm6:amd64', 'libnih1', 'libxom-java', 'texlive-generic-recommended', 'libxcb1:amd64', 'fonts-lato', 'libc6-dev:amd64', 'raster3d', 'libtype-tiny-perl', 'ttf-adf-accanthis', 'libxml-sax-writer-perl', 'libdjvulibre-text', 'fonts-ebgaramond-extra', 'libbareword-filehandles-perl', 'xterm', 'libsoftware-license-perl', 'libapache2-mod-perl2', 'libjgoodies-forms-java', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'libterm-readkey-perl', 'libxpp3-java', 'python-pkg-resources', 'libcolorhug2:amd64', 'tcl8.6', 'apache2-bin', 'melting', 'libsystemd-login0:amd64', 'libedit2:amd64', 'parsinsert', 'libgd-text-perl', 'g++-4.9', 'libcolamd2.8.0:amd64', 'xbitmaps', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'libelk0', 'shared-mime-info', 'libxml2:amd64', 'libbambamc0', 'libsoap-lite-perl', 'libtdb1:amd64', 'libxi6:amd64', 'libxcb-shm0:amd64', 'libxml-filter-buffertext-perl', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libtree-dagnode-perl', 'libalgorithm-munkres-perl', 'libxml-writer-perl', 'mustang', 'libsynctex1', 'fonts-stix', 'cain-solvers', 'libgomp1:amd64', 'ant-optional', 'giira', 'libpython-all-dev:amd64', 'libsndfile1:amd64', 'libfontenc1:amd64', 'libprotobuf9:amd64', 'libxtst6:amd64', 'libperl5.20', 'libparams-classify-perl', 'phyutility', 'libsqlite3-0:amd64', 'fonts-inconsolata', 'blends-common', 'libcroco3:amd64', 'libxml-twig-perl', 'bc', 'libjson-c2:amd64', 'libxdmcp6:amd64', 'libexiv2-12', 'libcommons-pool-java', 'tasksel', 'libasound2:amd64', 'libxkbcommon0:amd64', 'fonts-sil-gentium', 'libcgi-fast-perl', 'python-reportlab', 'libfile-which-perl', 'probcons', 'libxml-parser-perl', 'libcommons-cli-java', 'libxcomposite1:amd64', 'imagemagick-common', 'fonts-ebgaramond', 'libjbig2dec0', 'ca-certificates-java', 'libsoup2.4-1:amd64', 'libregexp-common-perl', 'colord-data', 'pkg-config', 'liblqr-1-0:amd64', 'libgs9', 'libatk-bridge2.0-0:amd64', 'libapache-pom-java', 'libxml-perl', 'libpostscript-perl', 'tcpd', 'libpython2.7-dev:amd64', 'libsane-extras-common', 'genometools-common', 'xml-core', 'libtie-ixhash-perl', 'libfile-copy-recursive-perl', 'perl', 'libatm1:amd64', 'fonts-lyx', 'libxv1:amd64', 'librest-0.7-0:amd64', 'libxshmfence1:amd64', 'libhttp-daemon-perl', 'notification-daemon', 'ruby2.1', 'x11-common', 'libfile-desktopentry-perl', 'libperlio-gzip-perl', 'liblua5.1-0:amd64', 'netbase', 'update-inetd', 'libbcprov-java', 'libxrender1:amd64', 'python-sympy', 'libxaw7:amd64', 'libjbig0:amd64', 'libbio-perl-run-perl', 'texlive-pstricks', 'libxml-commons-resolver1.1-java', 'bwa', 'libtask-weaken-perl', 'python-cogent', 'librole-tiny-perl', 'cdbfasta', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'python-six', 'libbiojava1.7-java', 'libdjvulibre21:amd64', 'libnet-dbus-perl', 'python-pil:amd64', 'libxcursor1:amd64', 'libgd-perl', 'libbiojava-java', 'libpolkit-gobject-1-0:amd64', 'libio-string-perl', 'tigr-glimmer', 'boxshade', 'libxau6:amd64', 'libcassie1', 'libclass-method-modifiers-perl', 'libmath-tamuanova-perl', 'x11-utils', 'libjava-xmlbuilder-java', 'libmagickcore-6.q16-2-extra:amd64', 'tk', 'ifupdown', 'libexpat1-dev:amd64', 'python-pyparsing', 'libunicode-map-perl', 'libopenmpi1.6', 'libaprutil1:amd64', 'texlive-latex-recommended-doc', 'libxcb-sync1:amd64', 'texlive-fonts-extra-doc', 'fonts-lobstertwo', 'libjaxen-java', 'file', 'ttf-adf-gillius', 'liblist-allutils-perl', 'filo', 'libgfortran3:amd64', 'python-dev', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'libspiffy-perl', 'libnih-dbus1', 'libx11-protocol-perl', 'default-jre', 'libtest-pod-perl', 'libxfixes3:amd64', 'minia', 'emboss-data', 'libbsd-resource-perl', 'libtimedate-perl', 'libwww-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'mysql-client', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libalgorithm-diff-perl', 'libvorbisenc2:amd64', 'libxcb-dri2-0:amd64', 'fasttree', 'libvorbisfile3:amd64', 'libbio-perl-perl', 'acedb-other', 'libsvg-perl', 'libboost-program-options1.55.0:amd64', 'libdevel-caller-perl', 'libtre5:amd64', 'velvet', 'libquadmath0:amd64', 'aragorn', 'libdbd-mysql-perl', 'libsort-naturally-perl', 'libisl10:amd64', 'disulfinder-data', 'libset-scalar-perl', 'libogg0:amd64', 'libyaml-0-2:amd64', 'libsasl2-2:amd64', 'lynx', 'libcdt5', 'libcarp-always-perl', 'libjgoodies-common-java', 'libanfo0', 'libc-dev-bin', 'cpp', 'tzdata-java', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl', 'dssp'] 14m6.8s DUMP: (Reading database ... 8110 files and directories currently installed.) Removing java-common (0.52) ... Purging configuration files for java-common (0.52) ... Removing texlive-latex-base (2014.20141024-2+deb8u1) ... Purging configuration files for texlive-latex-base (2014.20141024-2+deb8u1) ... Removing texlive-pictures (2014.20141024-2+deb8u1) ... Purging configuration files for texlive-pictures (2014.20141024-2+deb8u1) ... Removing libv4lconvert0:amd64 (1.6.0-2) ... Purging configuration files for libv4lconvert0:amd64 (1.6.0-2) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libbytecode-java which isn't installed dpkg: warning: ignoring request to remove python-scipy which isn't installed dpkg: warning: ignoring request to remove python-dateutil which isn't installed Removing libv4l-0:amd64 (1.6.0-2) ... 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Purging configuration files for libargtable2-0 (12-1.1) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Purging configuration files for libtiff5:amd64 (4.0.3-12.3+deb8u5) ... dpkg: warning: ignoring request to remove libmagickcore5-extra which isn't installed dpkg: warning: ignoring request to remove fonts-gfs-complutum which isn't installed dpkg: warning: ignoring request to remove libclass-c3-perl which isn't installed Removing libutempter0 (1.1.5-4) ... Purging configuration files for libutempter0 (1.1.5-4) ... Deleting utempter group... Removing libcairo-gobject2:amd64 (1.14.0-2.1+deb8u2) ... Purging configuration files for libcairo-gobject2:amd64 (1.14.0-2.1+deb8u2) ... dpkg: warning: ignoring request to remove libole-storage-lite-perl which isn't installed Removing libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... 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Purging configuration files for libxxf86dga1:amd64 (2:1.1.4-1+b1) ... Removing libcloog-isl4:amd64 (0.18.2-1+b2) ... Purging configuration files for libcloog-isl4:amd64 (0.18.2-1+b2) ... Removing fonts-lmodern (2.004.4-5) ... Purging configuration files for fonts-lmodern (2.004.4-5) ... Removing libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Purging configuration files for libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... dpkg: warning: ignoring request to remove libmodule-signature-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-perl which isn't installed dpkg: warning: ignoring request to remove maq which isn't installed Removing libpcsclite1:amd64 (1.8.13-1+deb8u1) ... Purging configuration files for libpcsclite1:amd64 (1.8.13-1+deb8u1) ... Removing libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Purging configuration files for libxxf86vm1:amd64 (1:1.1.3-1+b1) ... dpkg: warning: ignoring request to remove libasound2-data which isn't installed Removing libtbb2 (4.2~20140122-5) ... Purging configuration files for libtbb2 (4.2~20140122-5) ... Removing libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Purging configuration files for libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Removing mothur (1.33.3+dfsg-2) ... Purging configuration files for mothur (1.33.3+dfsg-2) ... Removing libgphoto2-port10:amd64 (2.5.4-1.1+b2) ... Purging configuration files for libgphoto2-port10:amd64 (2.5.4-1.1+b2) ... Removing libsane-common (1.0.24-8+deb8u2) ... Purging configuration files for libsane-common (1.0.24-8+deb8u2) ... Removing directory /etc/sane.d/ ... dpkg: warning: ignoring request to remove liblensfun-data which isn't installed Removing texlive-fonts-recommended (2014.20141024-2+deb8u1) ... Purging configuration files for texlive-fonts-recommended (2014.20141024-2+deb8u1) ... Removing libpotrace0 (1.12-1+deb8u1) ... Purging configuration files for libpotrace0 (1.12-1+deb8u1) ... dpkg: warning: ignoring request to remove libgraphics-colorobject-perl which isn't installed dpkg: warning: ignoring request to remove libmultidimensional-perl which isn't installed Removing libwmf0.2-7:amd64 (0.2.8.4-10.3+deb8u2) ... Purging configuration files for libwmf0.2-7:amd64 (0.2.8.4-10.3+deb8u2) ... Removing libwrap0:amd64 (7.6.q-25) ... Purging configuration files for libwrap0:amd64 (7.6.q-25) ... Removing libidn11:amd64 (1.29-1+deb8u2) ... Purging configuration files for libidn11:amd64 (1.29-1+deb8u2) ... Removing fastlink (4.1P-fix95-3) ... Purging configuration files for fastlink (4.1P-fix95-3) ... dpkg: warning: ignoring request to remove aevol which isn't installed dpkg: warning: ignoring request to remove libxml-libxslt-perl which isn't installed dpkg: warning: ignoring request to remove fonts-comfortaa which isn't installed Removing med-config (2.0) ... Purging configuration files for med-config (2.0) ... dpkg: warning: ignoring request to remove fonts-liberation which isn't installed Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Purging configuration files for libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... dpkg: warning: ignoring request to remove libmath-vec-perl which isn't installed dpkg: warning: ignoring request to remove fonts-sil-gentium-basic which isn't installed Removing libptexenc1 (2014.20140926.35254-6) ... Purging configuration files for libptexenc1 (2014.20140926.35254-6) ... dpkg: warning: ignoring request to remove python-biopython which isn't installed dpkg: warning: ignoring request to remove python-matplotlib which isn't installed Removing libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u7) ... Purging configuration files for libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u7) ... Removing systemd-shim (9-1) ... Purging configuration files for systemd-shim (9-1) ... No diversion 'diversion of /usr/share/dbus-1/system-services/org.freedesktop.systemd1.service to /usr/share/dbus-1/system-services/org.freedesktop.systemd1.service.systemd by systemd-shim', none removed. dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove fitgcp which isn't installed Removing libglpk36:amd64 (4.55-1) ... Purging configuration files for libglpk36:amd64 (4.55-1) ... Removing biomaj (1.2.3-4) ... Purging configuration files for biomaj (1.2.3-4) ... Warning, BioMAJ database for MySQL is not deleted by process removal. Removing fonts-dejavu-core (2.34-1) ... Purging configuration files for fonts-dejavu-core (2.34-1) ... dpkg: warning: ignoring request to remove python2.7-dev which isn't installed Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... 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Purging configuration files for texlive-latex-extra-doc (2014.20141024-1) ... dpkg: warning: ignoring request to remove datamash which isn't installed Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libnettle4:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove python-gmpy which isn't installed Removing ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... Purging configuration files for ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... dpkg: warning: ignoring request to remove concavity which isn't installed dpkg: warning: ignoring request to remove libcommons-math3-java which isn't installed dpkg: warning: ignoring request to remove ipython which isn't installed dpkg: warning: ignoring request to remove libmysql-java which isn't installed dpkg: warning: ignoring request to remove libjcommon-java which isn't installed Removing prosper (1.00.4+cvs.2007.05.01-4) ... Purging configuration files for prosper (1.00.4+cvs.2007.05.01-4) ... Removing libmpc3:amd64 (1.0.2-1) ... Purging configuration files for libmpc3:amd64 (1.0.2-1) ... Removing python (2.7.9-1) ... Purging configuration files for python (2.7.9-1) ... Removing libieee1284-3:amd64 (0.2.11-12) ... Purging configuration files for libieee1284-3:amd64 (0.2.11-12) ... dpkg: warning: ignoring request to remove libio-html-perl which isn't installed Removing libpython2.7:amd64 (2.7.9-2+deb8u1) ... Purging configuration files for libpython2.7:amd64 (2.7.9-2+deb8u1) ... dpkg: warning: ignoring request to remove autodock which isn't installed Removing libgtk2.0-common (2.24.25-3+deb8u2) ... Purging configuration files for libgtk2.0-common (2.24.25-3+deb8u2) ... Removing libpoppler-qt4-4:amd64 (0.26.5-2+deb8u4) ... Purging configuration files for libpoppler-qt4-4:amd64 (0.26.5-2+deb8u4) ... dpkg: warning: ignoring request to remove glpk-utils which isn't installed Removing libp11-kit0:amd64 (0.20.7-1) ... 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Purging configuration files for libglu1-mesa:amd64 (9.0.0-2) ... dpkg: warning: ignoring request to remove libtree-dagnode-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libxml-writer-perl which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed Removing libsynctex1 (2014.20140926.35254-6) ... Purging configuration files for libsynctex1 (2014.20140926.35254-6) ... dpkg: warning: ignoring request to remove fonts-stix which isn't installed dpkg: warning: ignoring request to remove cain-solvers which isn't installed Removing libgomp1:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libgomp1:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove ant-optional which isn't installed dpkg: warning: ignoring request to remove giira which isn't installed dpkg: warning: ignoring request to remove libpython-all-dev which isn't installed Removing libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... Purging configuration files for libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... Removing libfontenc1:amd64 (1:1.1.2-1+b2) ... Purging configuration files for libfontenc1:amd64 (1:1.1.2-1+b2) ... Removing libprotobuf9:amd64 (2.6.1-1) ... Purging configuration files for libprotobuf9:amd64 (2.6.1-1) ... Removing libxtst6:amd64 (2:1.2.2-1+deb8u1) ... Purging configuration files for libxtst6:amd64 (2:1.2.2-1+deb8u1) ... dpkg: warning: ignoring request to remove libperl5.20 which isn't installed dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove phyutility which isn't installed Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Purging configuration files for libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... dpkg: warning: ignoring request to remove fonts-inconsolata which isn't installed Removing blends-common (0.6.92.2) ... Purging configuration files for blends-common (0.6.92.2) ... Removing libcroco3:amd64 (0.6.8-3+b1) ... Purging configuration files for libcroco3:amd64 (0.6.8-3+b1) ... dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed Removing bc (1.06.95-9) ... Purging configuration files for bc (1.06.95-9) ... Removing libjson-c2:amd64 (0.11-4) ... Purging configuration files for libjson-c2:amd64 (0.11-4) ... Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+b1) ... Removing libexiv2-12 (0.23-1) ... Purging configuration files for libexiv2-12 (0.23-1) ... dpkg: warning: ignoring request to remove libcommons-pool-java which isn't installed Removing tasksel (3.31+deb8u1) ... Purging configuration files for tasksel (3.31+deb8u1) ... Removing libasound2:amd64 (1.0.28-1) ... Purging configuration files for libasound2:amd64 (1.0.28-1) ... Removing libxkbcommon0:amd64 (0.4.3-2) ... Purging configuration files for libxkbcommon0:amd64 (0.4.3-2) ... dpkg: warning: ignoring request to remove fonts-sil-gentium which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove python-reportlab which isn't installed dpkg: warning: ignoring request to remove libfile-which-perl which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed Removing libxcomposite1:amd64 (1:0.4.4-1) ... Purging configuration files for libxcomposite1:amd64 (1:0.4.4-1) ... Removing imagemagick-common (8:6.8.9.9-5+deb8u12) ... Purging configuration files for imagemagick-common (8:6.8.9.9-5+deb8u12) ... dpkg: warning: ignoring request to remove fonts-ebgaramond which isn't installed Removing libjbig2dec0 (0.13-4~deb8u2) ... Purging configuration files for libjbig2dec0 (0.13-4~deb8u2) ... Removing ca-certificates-java (20140324) ... Purging configuration files for ca-certificates-java (20140324) ... Removing libsoup2.4-1:amd64 (2.48.0-1+deb8u1) ... Purging configuration files for libsoup2.4-1:amd64 (2.48.0-1+deb8u1) ... dpkg: warning: ignoring request to remove libregexp-common-perl which isn't installed dpkg: warning: ignoring request to remove colord-data which isn't installed dpkg: warning: ignoring request to remove pkg-config which isn't installed Removing liblqr-1-0:amd64 (0.4.2-2) ... Purging configuration files for liblqr-1-0:amd64 (0.4.2-2) ... Removing libgs9 (9.06~dfsg-2+deb8u7) ... Purging configuration files for libgs9 (9.06~dfsg-2+deb8u7) ... Removing libatk-bridge2.0-0:amd64 (2.14.0-2) ... Purging configuration files for libatk-bridge2.0-0:amd64 (2.14.0-2) ... dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libpostscript-perl which isn't installed dpkg: warning: ignoring request to remove tcpd which isn't installed dpkg: warning: ignoring request to remove libpython2.7-dev which isn't installed dpkg: warning: ignoring request to remove libsane-extras-common which isn't installed dpkg: warning: ignoring request to remove genometools-common which isn't installed Removing xml-core (0.13+nmu2) ... Purging configuration files for xml-core (0.13+nmu2) ... dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove libfile-copy-recursive-perl which isn't installed dpkg: warning: ignoring request to remove perl which isn't installed Removing libatm1:amd64 (1:2.5.1-1.5) ... Purging configuration files for libatm1:amd64 (1:2.5.1-1.5) ... dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Removing libxv1:amd64 (2:1.0.10-1+deb8u1) ... Purging configuration files for libxv1:amd64 (2:1.0.10-1+deb8u1) ... Removing librest-0.7-0:amd64 (0.7.92-3) ... Purging configuration files for librest-0.7-0:amd64 (0.7.92-3) ... Removing libxshmfence1:amd64 (1.1-4) ... Purging configuration files for libxshmfence1:amd64 (1.1-4) ... dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed Removing notification-daemon (0.7.6-2) ... Purging configuration files for notification-daemon (0.7.6-2) ... dpkg: warning: ignoring request to remove ruby2.1 which isn't installed Removing x11-common (1:7.7+7) ... Purging configuration files for x11-common (1:7.7+7) ... dpkg: warning: ignoring request to remove libfile-desktopentry-perl which isn't installed dpkg: warning: ignoring request to remove libperlio-gzip-perl which isn't installed Removing liblua5.1-0:amd64 (5.1.5-7.1) ... Purging configuration files for liblua5.1-0:amd64 (5.1.5-7.1) ... Removing netbase (5.3) ... Purging configuration files for netbase (5.3) ... Removing update-inetd (4.43) ... Purging configuration files for update-inetd (4.43) ... Removing libbcprov-java (1.49+dfsg-3+deb8u2) ... Purging configuration files for libbcprov-java (1.49+dfsg-3+deb8u2) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Purging configuration files for libxrender1:amd64 (1:0.9.8-1+b1) ... Removing python-sympy (0.7.5-3) ... Purging configuration files for python-sympy (0.7.5-3) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Purging configuration files for libxaw7:amd64 (2:1.0.12-2+b1) ... Removing libjbig0:amd64 (2.1-3.1) ... Purging configuration files for libjbig0:amd64 (2.1-3.1) ... dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed Removing texlive-pstricks (2014.20141024-1) ... Purging configuration files for texlive-pstricks (2014.20141024-1) ... Removing libxml-commons-resolver1.1-java (1.2-7) ... Purging configuration files for libxml-commons-resolver1.1-java (1.2-7) ... Removing bwa (0.7.10-1) ... Purging configuration files for bwa (0.7.10-1) ... dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove python-cogent which isn't installed dpkg: warning: ignoring request to remove librole-tiny-perl which isn't installed dpkg: warning: ignoring request to remove cdbfasta which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed Removing libice6:amd64 (2:1.0.9-1+b1) ... Purging configuration files for libice6:amd64 (2:1.0.9-1+b1) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove python-six which isn't installed dpkg: warning: ignoring request to remove libbiojava1.7-java which isn't installed Removing libdjvulibre21:amd64 (3.5.25.4-4+b1) ... Purging configuration files for libdjvulibre21:amd64 (3.5.25.4-4+b1) ... dpkg: warning: ignoring request to remove libnet-dbus-perl which isn't installed dpkg: warning: ignoring request to remove python-pil which isn't installed Removing libxcursor1:amd64 (1:1.1.14-1+deb8u1) ... Purging configuration files for libxcursor1:amd64 (1:1.1.14-1+deb8u1) ... dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libbiojava-java which isn't installed Removing libpolkit-gobject-1-0:amd64 (0.105-15~deb8u2) ... Purging configuration files for libpolkit-gobject-1-0:amd64 (0.105-15~deb8u2) ... dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed Removing boxshade (3.3.1-8) ... Purging configuration files for boxshade (3.3.1-8) ... Removing libxau6:amd64 (1:1.0.8-1) ... Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... Removing libcassie1 (1.0.1+dfsg-3+b1) ... Purging configuration files for libcassie1 (1.0.1+dfsg-3+b1) ... dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libmath-tamuanova-perl which isn't installed Removing x11-utils (7.7+2) ... Purging configuration files for x11-utils (7.7+2) ... dpkg: warning: ignoring request to remove libjava-xmlbuilder-java which isn't installed dpkg: warning: ignoring request to remove libmagickcore-6.q16-2-extra which isn't installed dpkg: warning: ignoring request to remove tk which isn't installed Removing ifupdown (0.7.53.1) ... Purging configuration files for ifupdown (0.7.53.1) ... dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove python-pyparsing which isn't installed dpkg: warning: ignoring request to remove libunicode-map-perl which isn't installed Removing libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Purging configuration files for libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Removing libaprutil1:amd64 (1.5.4-1) ... Purging configuration files for libaprutil1:amd64 (1.5.4-1) ... Removing texlive-latex-recommended-doc (2014.20141024-2+deb8u1) ... Purging configuration files for texlive-latex-recommended-doc (2014.20141024-2+deb8u1) ... Removing libxcb-sync1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-sync1:amd64 (1.10-3+b1) ... Removing texlive-fonts-extra-doc (2014.20141024-1) ... Purging configuration files for texlive-fonts-extra-doc (2014.20141024-1) ... dpkg: warning: ignoring request to remove fonts-lobstertwo which isn't installed dpkg: warning: ignoring request to remove libjaxen-java which isn't installed dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove ttf-adf-gillius which isn't installed dpkg: warning: ignoring request to remove liblist-allutils-perl which isn't installed dpkg: warning: ignoring request to remove filo which isn't installed Removing libgfortran3:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libgfortran3:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove python-dev which isn't installed Removing libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Purging configuration files for libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed Removing perl-modules (5.20.2-3+deb8u11) ... Purging configuration files for perl-modules (5.20.2-3+deb8u11) ... dpkg: warning: ignoring request to remove libspiffy-perl which isn't installed Removing libnih-dbus1 (1.0.3-4.3) ... Purging configuration files for libnih-dbus1 (1.0.3-4.3) ... dpkg: warning: ignoring request to remove libx11-protocol-perl which isn't installed dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove libtest-pod-perl which isn't installed Removing libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Purging configuration files for libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... dpkg: warning: ignoring request to remove minia which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove mysql-client which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed Removing libvorbisenc2:amd64 (1.3.4-2+deb8u1) ... Purging configuration files for libvorbisenc2:amd64 (1.3.4-2+deb8u1) ... Removing libxcb-dri2-0:amd64 (1.10-3+b1) ... Purging configuration files for libxcb-dri2-0:amd64 (1.10-3+b1) ... dpkg: warning: ignoring request to remove fasttree which isn't installed Removing libvorbisfile3:amd64 (1.3.4-2+deb8u1) ... Purging configuration files for libvorbisfile3:amd64 (1.3.4-2+deb8u1) ... dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove acedb-other which isn't installed dpkg: warning: ignoring request to remove libsvg-perl which isn't installed Removing libboost-program-options1.55.0:amd64 (1.55.0+dfsg-3) ... Purging configuration files for libboost-program-options1.55.0:amd64 (1.55.0+dfsg-3) ... dpkg: warning: ignoring request to remove libdevel-caller-perl which isn't installed Removing libtre5:amd64 (0.8.0-4+deb8u1) ... Purging configuration files for libtre5:amd64 (0.8.0-4+deb8u1) ... dpkg: warning: ignoring request to remove velvet which isn't installed Removing libquadmath0:amd64 (4.9.2-10+deb8u1) ... Purging configuration files for libquadmath0:amd64 (4.9.2-10+deb8u1) ... dpkg: warning: ignoring request to remove aragorn which isn't installed dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed dpkg: warning: ignoring request to remove libsort-naturally-perl which isn't installed Removing libisl10:amd64 (0.12.2-2) ... Purging configuration files for libisl10:amd64 (0.12.2-2) ... dpkg: warning: ignoring request to remove disulfinder-data which isn't installed dpkg: warning: ignoring request to remove libset-scalar-perl which isn't installed Removing libogg0:amd64 (1.3.2-1) ... Purging configuration files for libogg0:amd64 (1.3.2-1) ... Removing libyaml-0-2:amd64 (0.1.6-3) ... Purging configuration files for libyaml-0-2:amd64 (0.1.6-3) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Purging configuration files for libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... dpkg: warning: ignoring request to remove lynx which isn't installed Removing libcdt5 (2.38.0-7) ... Purging configuration files for libcdt5 (2.38.0-7) ... dpkg: warning: ignoring request to remove libcarp-always-perl which isn't installed dpkg: warning: ignoring request to remove libjgoodies-common-java which isn't installed Removing libanfo0 (0.98-4+b1) ... Purging configuration files for libanfo0 (0.98-4+b1) ... dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove tzdata-java which isn't installed Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove libspreadsheet-parseexcel-perl which isn't installed dpkg: warning: ignoring request to remove dssp which isn't installed 14m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg', '--purge', 'java-common', 'texlive-latex-base', 'texlive-pictures', 'libv4lconvert0:amd64', 'libgssapi-krb5-2:amd64', 'libmime-tools-perl', 'libbytecode-java', 'python-scipy', 'python-dateutil', 'libv4l-0:amd64', 'libyaml-perl', 'texlive-latex-base-doc', 'libelf1:amd64', 'emboss', 'libjzlib-java', 'libpangoxft-1.0-0:amd64', 'cython', 'libopenexr6:amd64', 'libmodule-implementation-perl', 'libargtable2-0', 'libtiff5:amd64', 'libmagickcore5-extra:amd64', 'fonts-gfs-complutum', 'libclass-c3-perl', 'libutempter0', 'libcairo-gobject2:amd64', 'libole-storage-lite-perl', 'libgd2-xpm:amd64', 'libdom4j-java', 'libmro-compat-perl', 'liblsan0:amd64', 'libxdamage1:amd64', 'libpangocairo-1.0-0:amd64', 'libapache2-reload-perl', 'dmidecode', 'libpq5:amd64', 'libboost-system1.55.0:amd64', 'libtext-template-perl', 'ufraw-batch', 'cgmanager', 'liblwp-protocol-https-perl', 'libmath-vecstat-perl', 'libfile-listing-perl', 'libgd-graph-perl', 'smalt', 'libio-stringy-perl', 'ghostscript', 'libpython2.7-stdlib:amd64', 'fonts-gfs-didot', 'libatk1.0-0:amd64', 'fonts-oflb-asana-math', 'libmath-spline-perl', 'libgflags2', 'libsane:amd64', 'libzzip-0-13:amd64', 'fonts-lobster', 'libxml-sax-perl', 'libasan1:amd64', 'dialign-tx', 'libstrictures-perl', 'libmng1:amd64', 'libxml-commons-external-java', 'dialign', 'libsub-install-perl', 'imagemagick-6.q16', 'libpod-coverage-perl', 'libclone-perl', 'libpopt0:amd64', 'libhtml-tableextract-perl', 'libdrm2:amd64', 'libdbd-pg-perl', 'libcommons-net2-java', 'libapache-dbi-perl', 'libpackage-constants-perl', 'libcommons-lang-java', 'libpython-dev:amd64', 'lua-md5:amd64', 'tipa', 'libboost-serialization1.55.0:amd64', 'libdns-export100', 'libgmp10:amd64', 'policykit-1', 'libtxc-dxtn-s2tc0:amd64', 'libgd3:amd64', 'libgsl0ldbl', 'libhtml-format-perl', 'last-align', 'mafft', 'libossp-uuid-perl', 'libfreecontact0', 'libmoo-perl', 'bowtie', 'libcrypt-ssleay-perl', 'python2.7', 'libasyncns0:amd64', 'junit4', 'libjbzip2-java', 'libipc-sharelite-perl', 'libfont-ttf-perl', 'libpolkit-agent-1-0:amd64', 'libgl1-mesa-glx:amd64', 'libmsv-java', 'python-minimal', 'manpages-dev', 'fonts-texgyre', 'libxft2:amd64', 'autogrid', 'libatomic1:amd64', 'libruby2.1:amd64', 'libldap-2.4-2:amd64', 'liblcms1:amd64', 'fonts-junicode', 'picard-tools', 'python-pysam', 'bioperl-run', 'libgudev-1.0-0:amd64', 'libhtml-tagset-perl', 'libyaml-tiny-perl', 'clearcut', 'genometools', 'plink', 'libapr1:amd64', 'ampliconnoise', 'altree', 'libdbd-sqlite3-perl', 'libxmlrpc-lite-perl', 'liboro-java', 'texlive-binaries', 'python2.6-minimal', 'libset-intspan-perl', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'libcgi-pm-perl', 'rubygems-integration', 'bioperl', 'init-system-helpers', 'libclass-isa-perl', 'x11-xserver-utils', 'libcupsimage2:amd64', 'libxpp2-java', 'perm', 'libdigest-perl-md5-perl', 'libhpdf-2.2.1', 'libb-hooks-op-check-perl', 'libgtk2.0-0:amd64', 'dconf-service', 'libdb5.1:amd64', 'xkb-data', 'libtasn1-6:amd64', 'discosnp', 'libnet-smtp-ssl-perl', 'python-cairo', 'libfreezethaw-perl', 'libhamcrest-java', 'libnspr4:amd64', 'libfile-slurp-tiny-perl', 'gcc-4.9', 'libxml-libxml-perl', 'fonts-droid', 'libxmu6:amd64', 'fonts-crosextra-carlito', 'libwww-robotrules-perl', 'libxcb-dri3-0:amd64', 'libkrb5-3:amd64', 'libstdc++-4.9-dev:amd64', 'libjpeg62-turbo:amd64', 'libmail-java', 'libtsan0:amd64', 'libarchive-extract-perl', 'disulfinder', 'libcairo2:amd64', 'perl-doc', 'libvpx1:amd64', 'ncbi-tools-bin', 'libpython2.7-minimal:amd64', 'proda', 'libpixman-1-0:amd64', 'gsettings-desktop-schemas', 'bedtools', 'openjdk-7-jre:amd64', 'python-glade2', 'liblapack3', 'gcc', 'primer3', 'python-pexpect', 'texlive-latex-recommended', 'fastx-toolkit', 'libxxf86dga1:amd64', 'libcloog-isl4:amd64', 'fonts-lmodern', 'libjasper1:amd64', 'libmodule-signature-perl', 'liburi-perl', 'libmodule-runtime-perl', 'maq', 'libpcsclite1:amd64', 'libxxf86vm1:amd64', 'libasound2-data', 'libtbb2', 'libxslt1.1:amd64', 'mothur', 'libgphoto2-port10:amd64', 'libsane-common', 'liblensfun-data', 'texlive-fonts-recommended', 'libpotrace0', 'libgraphics-colorobject-perl', 'libmultidimensional-perl', 'libwmf0.2-7:amd64', 'libwrap0:amd64', 'libidn11:amd64', 'fastlink', 'aevol', 'libxml-libxslt-perl', 'fonts-comfortaa', 'med-config', 'fonts-liberation', 'libkrb5support0:amd64', 'libmath-vec-perl', 'fonts-sil-gentium-basic', 'libptexenc1', 'python-biopython', 'python-matplotlib', 'libgdk-pixbuf2.0-0:amd64', 'systemd-shim', 'libnet-ssleay-perl', 'fitgcp', 'libglpk36:amd64', 'biomaj', 'fonts-dejavu-core', 'python2.7-dev', 'libfreetype6:amd64', 'libjson-glib-1.0-common', 'python-support', 'libjs-jquery', 'fonts-freefont-ttf', 'libgphoto2-l10n', 'fonts-crosextra-caladea', 'libatk-wrapper-java', 'libcilkrts5:amd64', 'libbio-asn1-entrezgene-perl', 'texlive-latex-extra-doc', 'datamash', 'libssl1.0.0:amd64', 'libnettle4:amd64', 'python-gmpy', 'ocl-icd-libopencl1:amd64', 'concavity', 'libcommons-math3-java', 'ipython', 'libmysql-java', 'libjcommon-java', 'prosper', 'libmpc3:amd64', 'python', 'libieee1284-3:amd64', 'libio-html-perl', 'libpython2.7:amd64', 'autodock', 'libgtk2.0-common', 'libpoppler-qt4-4:amd64', 'glpk-utils', 'libp11-kit0:amd64', 'libyaml-libyaml-perl', 'libblas3', 'python-pyrex', 'libservlet2.5-java', 'libcgmanager0:amd64', 'rnahybrid', 'libcr0', 'libthai0:amd64', 'med-tasks', 'python-tk', 'python-wxversion', 'libexiv2-13:amd64', 'libxerces2-java', 'libcommons-dbcp-java', 'openmpi-common', 'texlive-pictures-doc', 'ssake', 'hmmer', 'libk5crypto3:amd64', 'python-tz', 'dconf-gsettings-backend:amd64', 'fonts-freefont-otf', 'libdconf1:amd64', 'libwxbase3.0-0:amd64', 'libmagic1:amd64', 'python-imaging', 'libfile-homedir-perl', 'libcommons-jexl2-java', 'libjdom1-java', 'blt', 'libmath-derivative-perl', 'libdrm-nouveau2:amd64', 'fonts-cmu', 'libxml-sax-base-perl', 'liblog4j1.2-java', 'fonts-circos-symbols', 'libharfbuzz-icu0:amd64', 'fonts-cabin', 'libcommons-parent-java', 'poppler-data', 'dvipng', 'openmpi-bin', 'libgraph-perl', 'wwwconfig-common', 'at-spi2-core', 'fonts-dejavu-extra', 'libcpan-meta-perl', 'cd-hit', 'libjsch-java', 'idba', 'adwaita-icon-theme', 'libwebpdemux1:amd64', 'dialign-tx-data', 'liblensfun0', 'libnotify4:amd64', 'libilmbase6:amd64', 'libclass-inspector-perl', 'libvorbis0a:amd64', 'libboost-thread1.55.0:amd64', 'libmagickcore5:amd64', 'openssl', 'seqan-apps', 'fontconfig-config', 'libxinerama1:amd64', 'libconfig-general-perl', 'fonts-gfs-artemisia', 'cain', 'libisorelax-java', 'libio-socket-ssl-perl', 'libgoogle-glog0', 'libgcc-4.9-dev:amd64', 'libhwloc-plugins', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'libgraphics-colornames-perl', 'glib-networking:amd64', 'libmysqlclient18:amd64', 'libgusb2:amd64', 'libdata-section-perl', 'cpp-4.9', 'libxml-simple-perl', 'bamtools', 'libgtk2.0-bin', 'prank', 'libalgorithm-diff-xs-perl', 'libgetopt-simple-perl', 'tasksel-data', 'lua-lpeg:amd64', 'mira-assembler', 'liblcms2-2:amd64', 'xdg-user-dirs', 'libltdl7:amd64', 'libxss1:amd64', 'bowtie2', 'libgraphviz-perl', 'python-mock', 'libtcl8.6:amd64', 'mapsembler2', 'libnss3:amd64', 'texlive-latex-extra', 'libnetpbm10', 'libhttp-cookies-perl', 'libfcgi-perl', 'python-simplegeneric', 'libmodule-pluggable-perl', 'libgtk-3-0:amd64', 'python-renderpm:amd64', 'python-matplotlib-data', 'ncbi-blast+', 'default-jre-headless', 'libncbi6:amd64', 'libatk-wrapper-java-jni:amd64', 'libwebp5:amd64', 'libgvpr2', 'libqtgui4:amd64', 'alien-hunter', 'phyml', 'tophat', 'clustalo', 'libproxy1:amd64', 'libdate-calc-perl', 'hicolor-icon-theme', 'libboost-iostreams1.55.0:amd64', 'libglade2-0:amd64', 'ant', 'loki', 'libarray-compare-perl', 'libkeyutils1:amd64', 'libcarp-clan-perl', 'tk8.6', 'texlive-fonts-extra', 'libdrm-radeon1:amd64', 'libjcode-pm-perl', 'libhsqldb-java', 'rtax', 'libimport-into-perl', 'libpathplan4', 'libwayland-cursor0:amd64', 'libparse-recdescent-perl', 'lua-filesystem:amd64', 'libpadwalker-perl', 'libnet-http-perl', 'texlive-font-utils', 'ncbi-epcr', 'python-mpmath', 'libboost-regex1.55.0:amd64', 'libatk1.0-data', 'macs', 'libisccfg-export90', 'libperl4-corelibs-perl', 'libcanberra-gtk3-0:amd64', 'sane-utils', 'iproute2', 'libatspi2.0-0:amd64', 'libhwloc5:amd64', 'krb5-locales', 'python-reportlab-accel:amd64', 'exonerate', 'libexif12:amd64', 'libio-all-perl', 'libtamuanova-0.2', 'libjsoncpp0', 'libhtml-tree-perl', 'isc-dhcp-client', 'libavahi-common-data:amd64', 'libgdk-pixbuf2.0-common', 'amap-align', 'libnuma1:amd64', 'libmagickwand5:amd64', 'ttf-adf-universalis', 'libsvg-graph-perl', 'linux-libc-dev:amd64', 'libparams-util-perl', 'fonts-linuxlibertine', 'libdata-dumper-simple-perl', 'libxcb-shape0:amd64', 'colord', 'libcolord2:amd64', 'fastqc', 'libcofoja-java', 'texlive-fonts-recommended-doc', 'libsub-exporter-perl', 'biosquid', 'iproute', 'mysql-common', 'python-nose', 'libterm-ui-perl', 'freecontact', 'libsasl2-modules:amd64', 'liblog-message-perl', 'libxml-dom-perl', 'lynx-cur', 'libaprutil1-dbd-sqlite3:amd64', 'liberror-perl', 'menu', 'libaxis-java', 'libdrm-intel1:amd64', 'libgdbm3:amd64', 'fontconfig', 'libcanberra-gtk3-module:amd64', 'libace-perl', 'libxml-sax-expat-perl', 'fonts-font-awesome', 'python-gobject-2', 'infernal', 'libclass-c3-xs-perl', 'libpciaccess0:amd64', 'flexbar', 'ncoils', 'libtk8.6:amd64', 'libalgorithm-c3-perl', 'mysql-client-5.5', 'clustalw', 'libglib2.0-0:amd64', 'libcommons-collections3-java', 'lksctp-tools', 'graphviz', 'libxext6:amd64', 'libusb-1.0-0:amd64', 'libbsd0:amd64', 'libfftw3-double3:amd64', 'libxmuu1:amd64', 'libmagickwand-6.q16-2:amd64', 'libart-2.0-2:amd64', 'libxml-namespacesupport-perl', 'libfile-mimeinfo-perl', 'sgml-base', 'libcommons-httpclient-java', 'libcommons-logging-java', 'libisc-export95', 'liblexical-sealrequirehints-perl', 'libgnutls26:amd64', 'autodock-vina', 'libfile-basedir-perl', 'fonts-gfs-olga', 'tex-common', 'libxerces-c3.1:amd64', 'libmath-round-perl', 'libgtextutils0:amd64', 'gsfonts', 'libgcrypt11:amd64', 'libfont-afm-perl', 'libxdot4', 'libdevel-lexalias-perl', 'texlive-extra-utils', 'libllvm3.5:amd64', 'libjpeg8:amd64', 'libqt4-xml:amd64', 'libmath-random-mt-perl', 'python-htseq', 'libjson-glib-1.0-0:amd64', 'python-biopython-doc', 'libbamtools2.3.0', 'libtype-tiny-xs-perl', 'emboss-lib', 'python-pyglet', 'libswitch-perl', 'anfo', 'libpod-readme-perl', 'libsaxonb-java', 'blast2', 'libpolkit-backend-1-0:amd64', 'g++', 'libgif4:amd64', 'libelfg0:amd64', 'libio-sessiondata-perl', 'ant-contrib', 'libdevel-symdump-perl', 'libparams-validate-perl', 'qtcore4-l10n', 'xdg-utils', 'libopenjpeg5:amd64', 'libhtml-parser-perl', 'imagemagick', 'glib-networking-common', 'libthai-data', 'libhttp-message-perl', 'wise-data', 'libdata-stag-perl', 'libdate-manip-perl', 'python2.6', 'libgnutls-deb0-28:amd64', 'libheap-perl', 'libflac8:amd64', 'dnaclust', 'libpangox-1.0-0:amd64', 'mime-support', 'libicu52:amd64', 'libpango1.0-0:amd64', 'cain-examples', 'libgtk-3-bin', 'libjs-jquery-ui', 'python-gtk2', 'libcanberra0:amd64', 'libitm1:amd64', 'ncbi-data', 'libaudio2:amd64', 'ps2eps', 'libwebpmux1:amd64', 'circos-tools', 'perl-tk', 'binutils', 'libbit-vector-perl', 'libdatrie1:amd64', 'libxcb-present0:amd64', 'libx11-data', 'libg20', 'cassiopee', 'openjdk-7-jre-headless:amd64', 'python-wxgtk3.0', 'libglapi-mesa:amd64', 'libmath-bezier-perl', 'isc-dhcp-common', 'libpython-stdlib:amd64', 'libsam-java', 'libfontconfig1:amd64', 'libgphoto2-6:amd64', 'libconvert-binhex-perl', 'libxml-dom-xpath-perl', 'libxrandr2:amd64', 'libdevel-globaldestruction-perl', 'libatlas3-base', 'libcommons-codec-java', 'libamd2.3.1:amd64', 'libhttp-negotiate-perl', 'glib-networking-services', 'libtcmalloc-minimal4', 'libblas-common', 'libmpfr4:amd64', 'lmodern', 'libmagickcore-6.q16-2:amd64', 'libpaper-utils', 'libxcb-glx0:amd64', 'libpod-latex-perl', 'prerex', 'libwxgtk3.0-0:amd64', 'libipc-run-perl', 'python-numpy', 'libhtml-form-perl', 'libreadonly-perl', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'libspreadsheet-writeexcel-perl', 'sim4', 'ruby', 'libdata-optlist-perl', 'libgs9-common', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxt6:amd64', 'kalign', 'libffi6:amd64', 'libijs-0.35:amd64', 'fastdnaml', 'libsane-extras:amd64', 'netpbm', 'python-all', 'libpth20:amd64', 'libavahi-common3:amd64', 'libxcb-render0:amd64', 'libqtcore4:amd64', 'rename', 'libsub-exporter-progressive-perl', 'vprerex', 'texlive-base', 'libubsan0:amd64', 'libglpk-java', 'libffi5:amd64', 'libeigen3-dev', 'libgl1-mesa-dri:amd64', 'libxml-xpath-perl', 'libkpathsea6', 'libindirect-perl', 'libsctp1:amd64', 'libxml-regexp-perl', 'libharfbuzz0b:amd64', 'samtools', 'libxtables10', 'grinder', 'libcommons-discovery-java', 'probalign', 'python-decorator', 'libjets3t-java', 'poa', 'libboost-filesystem1.55.0:amd64', 'fonts-gfs-solomos', 'libio-pty-perl', 'tex-gyre', 'libgvc6', 'libpango-1.0-0:amd64', 'libcrypt-rc4-perl', 'libjs-underscore', 'libcgraph6', 'libx11-xcb1:amd64', 'libibverbs1', 'libsasl2-modules-db:amd64', 'arden', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'tm-align', 'libpaper1:amd64', 'manpages', 'libsoup-gnome2.4-1:amd64', 'libirs-export91', 'libxpm4:amd64', 'tk8.6-blt2.5', 'javascript-common', 'libgtk-3-common', 'liblist-moreutils-perl', 'circos', 'libwsdl4j-java', 'libgetopt-euclid-perl', 'libhttp-date-perl', 'python2.7-minimal', 'preview-latex-style', 'mipe', 'libcups2:amd64', 'libregexp-java', 'librsvg2-2:amd64', 'muscle', 'libexporter-tiny-perl', 'libpoppler46:amd64', 'python-all-dev', 'laptop-detect', 'librsvg2-common:amd64', 'libwayland-client0:amd64', 'texlive-pstricks-doc', 'libpangoft2-1.0-0:amd64', 'libdbi-perl', 'tcl', 'libmailtools-perl', 'fonts-gfs-neohellenic', 't-coffee', 'clonalframe', 'libtext-format-perl', 'kissplice', 'librelaxng-datatype-java', 'libunwind8', 'gasic', 'libtiff4:amd64', 'libmodule-build-perl', 'libpulse0:amd64', 'libsm6:amd64', 'libnih1', 'libxom-java', 'texlive-generic-recommended', 'libxcb1:amd64', 'fonts-lato', 'libc6-dev:amd64', 'raster3d', 'libtype-tiny-perl', 'ttf-adf-accanthis', 'libxml-sax-writer-perl', 'libdjvulibre-text', 'fonts-ebgaramond-extra', 'libbareword-filehandles-perl', 'xterm', 'libsoftware-license-perl', 'libapache2-mod-perl2', 'libjgoodies-forms-java', 'libtext-soundex-perl', 'ca-certificates', 'libpng12-0:amd64', 'libterm-readkey-perl', 'libxpp3-java', 'python-pkg-resources', 'libcolorhug2:amd64', 'tcl8.6', 'apache2-bin', 'melting', 'libsystemd-login0:amd64', 'libedit2:amd64', 'parsinsert', 'libgd-text-perl', 'g++-4.9', 'libcolamd2.8.0:amd64', 'xbitmaps', 'liblog-message-simple-perl', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'libelk0', 'shared-mime-info', 'libxml2:amd64', 'libbambamc0', 'libsoap-lite-perl', 'libtdb1:amd64', 'libxi6:amd64', 'libxcb-shm0:amd64', 'libxml-filter-buffertext-perl', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libtree-dagnode-perl', 'libalgorithm-munkres-perl', 'libxml-writer-perl', 'mustang', 'libsynctex1', 'fonts-stix', 'cain-solvers', 'libgomp1:amd64', 'ant-optional', 'giira', 'libpython-all-dev:amd64', 'libsndfile1:amd64', 'libfontenc1:amd64', 'libprotobuf9:amd64', 'libxtst6:amd64', 'libperl5.20', 'libparams-classify-perl', 'phyutility', 'libsqlite3-0:amd64', 'fonts-inconsolata', 'blends-common', 'libcroco3:amd64', 'libxml-twig-perl', 'bc', 'libjson-c2:amd64', 'libxdmcp6:amd64', 'libexiv2-12', 'libcommons-pool-java', 'tasksel', 'libasound2:amd64', 'libxkbcommon0:amd64', 'fonts-sil-gentium', 'libcgi-fast-perl', 'python-reportlab', 'libfile-which-perl', 'probcons', 'libxml-parser-perl', 'libcommons-cli-java', 'libxcomposite1:amd64', 'imagemagick-common', 'fonts-ebgaramond', 'libjbig2dec0', 'ca-certificates-java', 'libsoup2.4-1:amd64', 'libregexp-common-perl', 'colord-data', 'pkg-config', 'liblqr-1-0:amd64', 'libgs9', 'libatk-bridge2.0-0:amd64', 'libapache-pom-java', 'libxml-perl', 'libpostscript-perl', 'tcpd', 'libpython2.7-dev:amd64', 'libsane-extras-common', 'genometools-common', 'xml-core', 'libtie-ixhash-perl', 'libfile-copy-recursive-perl', 'perl', 'libatm1:amd64', 'fonts-lyx', 'libxv1:amd64', 'librest-0.7-0:amd64', 'libxshmfence1:amd64', 'libhttp-daemon-perl', 'notification-daemon', 'ruby2.1', 'x11-common', 'libfile-desktopentry-perl', 'libperlio-gzip-perl', 'liblua5.1-0:amd64', 'netbase', 'update-inetd', 'libbcprov-java', 'libxrender1:amd64', 'python-sympy', 'libxaw7:amd64', 'libjbig0:amd64', 'libbio-perl-run-perl', 'texlive-pstricks', 'libxml-commons-resolver1.1-java', 'bwa', 'libtask-weaken-perl', 'python-cogent', 'librole-tiny-perl', 'cdbfasta', 'libcache-cache-perl', 'libice6:amd64', 'wise', 'python-six', 'libbiojava1.7-java', 'libdjvulibre21:amd64', 'libnet-dbus-perl', 'python-pil:amd64', 'libxcursor1:amd64', 'libgd-perl', 'libbiojava-java', 'libpolkit-gobject-1-0:amd64', 'libio-string-perl', 'tigr-glimmer', 'boxshade', 'libxau6:amd64', 'libcassie1', 'libclass-method-modifiers-perl', 'libmath-tamuanova-perl', 'x11-utils', 'libjava-xmlbuilder-java', 'libmagickcore-6.q16-2-extra:amd64', 'tk', 'ifupdown', 'libexpat1-dev:amd64', 'python-pyparsing', 'libunicode-map-perl', 'libopenmpi1.6', 'libaprutil1:amd64', 'texlive-latex-recommended-doc', 'libxcb-sync1:amd64', 'texlive-fonts-extra-doc', 'fonts-lobstertwo', 'libjaxen-java', 'file', 'ttf-adf-gillius', 'liblist-allutils-perl', 'filo', 'libgfortran3:amd64', 'python-dev', 'libcupsfilters1:amd64', 'libmldbm-perl', 'perl-modules', 'libspiffy-perl', 'libnih-dbus1', 'libx11-protocol-perl', 'default-jre', 'libtest-pod-perl', 'libxfixes3:amd64', 'minia', 'emboss-data', 'libbsd-resource-perl', 'libtimedate-perl', 'libwww-perl', 'libxml-xpathengine-perl', 'libstatistics-descriptive-perl', 'mysql-client', 'libconvert-binary-c-perl', 'libsub-name-perl', 'libalgorithm-diff-perl', 'libvorbisenc2:amd64', 'libxcb-dri2-0:amd64', 'fasttree', 'libvorbisfile3:amd64', 'libbio-perl-perl', 'acedb-other', 'libsvg-perl', 'libboost-program-options1.55.0:amd64', 'libdevel-caller-perl', 'libtre5:amd64', 'velvet', 'libquadmath0:amd64', 'aragorn', 'libdbd-mysql-perl', 'libsort-naturally-perl', 'libisl10:amd64', 'disulfinder-data', 'libset-scalar-perl', 'libogg0:amd64', 'libyaml-0-2:amd64', 'libsasl2-2:amd64', 'lynx', 'libcdt5', 'libcarp-always-perl', 'libjgoodies-common-java', 'libanfo0', 'libc-dev-bin', 'cpp', 'tzdata-java', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl', 'dssp'] 14m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg', '--purge', 'med-cloud'] 14m6.8s DUMP: dpkg: warning: ignoring request to remove med-cloud which isn't installed 14m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg', '--purge', 'med-cloud'] 14m6.8s INFO: Running scripts post_purge 14m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_purge_exceptions'] 14m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_purge_exceptions'] 14m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg', '--purge', '--pending'] 14m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg', '--purge', '--pending'] 14m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg', '--remove', '--pending'] 14m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg', '--remove', '--pending'] 14m6.9s INFO: Running scripts post_test 14m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_test_exceptions'] 14m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'tmp/scripts/post_test_exceptions'] 14m6.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 14m8.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 14m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg-divert', '--list'] 14m8.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 14m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'dpkg-divert', '--list'] 14m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', 'clean'] 14m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTkiYQe', 'apt-get', 'clean'] 14m8.7s DEBUG: Recording chroot state 14m11.3s INFO: Warning: Package purging left files on system: /etc/ImageMagick/ not owned /etc/systemd/system/cgmanager.service -> /dev/null not owned /etc/systemd/system/cgproxy.service -> /dev/null not owned /var/lib/systemd/deb-systemd-helper-enabled/ not owned /var/lib/systemd/deb-systemd-helper-enabled/cgmanager.service.dsh-also not owned /var/lib/systemd/deb-systemd-helper-enabled/cgproxy.service.dsh-also not owned /var/lib/systemd/deb-systemd-helper-masked/ not owned /var/lib/systemd/deb-systemd-helper-masked/cgmanager.service not owned /var/lib/systemd/deb-systemd-helper-masked/cgproxy.service not owned 14m12.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/run/shm'] 14m12.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/run/shm'] 14m12.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/console'] 14m12.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/console'] 14m12.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/ptmx'] 14m12.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/ptmx'] 14m12.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/pts'] 14m12.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/dev/pts'] 14m12.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/proc'] 14m12.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpTkiYQe/proc'] 14m12.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 14m13.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpTkiYQe'] 14m13.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpTkiYQe 14m13.3s INFO: PASS: Upgrading between Debian distributions. 14m13.3s INFO: PASS: All tests. 14m13.3s INFO: piuparts run ends. ret=0 End: 2018-11-14 16:20:37 UTC