Start: 2017-12-26 11:02:47 UTC [wheezy] Package: science-biology Source: debian-science Version: 1.0 Installed-Size: 60 Maintainer: Debian Science Team Architecture: all Depends: science-tasks (= 1.0), science-config (= 1.0) Recommends: bauble, critterding, med-bio Suggests: avida-base, genesis, med-bio-dev Description: Debian Science Biology packages Homepage: http://wiki.debian.org/DebianScience/ Description-md5: 59633f821572a37f2f07d2231a8d2300 Tag: field::biology, role::metapackage, suite::debian Section: science Priority: extra Filename: pool/main/d/debian-science/science-biology_1.0_all.deb Size: 7630 MD5sum: f612da134d945325fd231f1ed664d759 SHA1: b17528f336ae398e412bc8939f7a89582d7dbaf8 SHA256: d9ed8614890b9ab2d20f6686264f8203be83c2edae522c52f1b111294616c6e6 [jessie] Package: science-biology Source: debian-science Version: 1.4 Installed-Size: 62 Maintainer: Debian Science Team Architecture: all Depends: science-tasks (= 1.4), science-config (= 1.4) Recommends: bauble, critterding, med-bio Suggests: avida-base, genesis, med-bio-dev Description: Debian Science Biology packages Homepage: http://wiki.debian.org/DebianScience/ Description-md5: 59633f821572a37f2f07d2231a8d2300 Tag: field::biology, role::metapackage, suite::debian Section: science Priority: extra Filename: pool/main/d/debian-science/science-biology_1.4_all.deb Size: 11496 MD5sum: 934a233a64acd884aa51c4d37c29c5cb SHA1: eeb072018c533a88563320bb5694f8ab62c44672 SHA256: 3872561aaf7cabd3db6b1a2aa54fd109c702b61f53086099f0f00345700e5d3d Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B reference-chroot-metadata.dat --apt science-biology=1.4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.83~201712142018~0.82-32-ge0ca5430 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --warn-on-debsums-errors --warn-on-install-over-symlink -i /usr/lib/dbus-1.0/dbus-daemon-launch-helper --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B reference-chroot-metadata.dat --apt science-biology=1.4 0m0.0s INFO: Running on: Linux piu-slave-bm-a 4.9.0-4-amd64 #1 SMP Debian 4.9.65-3+deb9u1 (2017-12-23) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpbk5I5t 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpbk5I5t 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/run/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/run/shm'] 0m1.6s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ wheezy main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpbk5I5t/tmp/scripts/ 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpbk5I5t/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', 'update'] 0m4.2s DUMP: Hit http://mirror.bm.debian.org wheezy Release.gpg Hit http://mirror.bm.debian.org wheezy Release Hit http://mirror.bm.debian.org wheezy/main amd64 Packages Hit http://mirror.bm.debian.org wheezy/main Translation-en Reading package lists... 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', 'update'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.8s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.8s INFO: Running scripts post_setup 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_dummy_users'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_dummy_users'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_experimental'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_experimental'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_forbid_home'] 0m5.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_forbid_home'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m6.9s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: ucf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 70.8 kB of archives. After this operation, 236 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.8 kB in 0s (0 B/s) Selecting previously unselected package ucf. (Reading database ... 6639 files and directories currently installed.) Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up ucf (3.0025+nmu3) ... 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_minimize'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_minimize'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_zz_backports'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_setup_zz_backports'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.9s DUMP: install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.9s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m7.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 0m8.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 0m8.2s INFO: Running scripts is_testable 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/is_testable_uninstallable'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/is_testable_uninstallable'] 0m8.2s INFO: Running scripts pre_test 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_test_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_test_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_test_root_password'] 0m8.2s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_test_root_password'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'show', 'science-biology'] 0m8.2s DUMP: Package: science-biology Source: debian-science Version: 1.0 Installed-Size: 60 Maintainer: Debian Science Team Architecture: all Depends: science-tasks (= 1.0), science-config (= 1.0) Recommends: bauble, critterding, med-bio Suggests: avida-base, genesis, med-bio-dev Description-en: Debian Science Biology packages This metapackage will install Debian Science packages related to Biology. You might also be interested in the field::biology debtag. . This metapackage makes use of the packages med-bio and med-bio-dev (for development of biological applications) which are maintained by Debian Med - another Debian Pure Blend. If you are a biologist you are most probably interested in the Debian Med project which deals with biology and medicine in much more detail then the more general Debian Science. Homepage: http://wiki.debian.org/DebianScience/ Description-md5: 59633f821572a37f2f07d2231a8d2300 Tag: field::biology, role::metapackage, suite::debian Section: science Priority: extra Filename: pool/main/d/debian-science/science-biology_1.0_all.deb Size: 7630 MD5sum: f612da134d945325fd231f1ed664d759 SHA1: b17528f336ae398e412bc8939f7a89582d7dbaf8 SHA256: d9ed8614890b9ab2d20f6686264f8203be83c2edae522c52f1b111294616c6e6 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'show', 'science-biology'] 0m8.2s INFO: apt-cache knows about the following packages: science-biology 0m8.2s INFO: Running scripts pre_install 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_database-server'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_database-server'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_exceptions'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_exceptions'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_extras'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_extras'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'policy'] 0m8.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ wheezy/main Translation-en 500 http://mirror.bm.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'policy'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'policy', 'science-biology'] 0m8.4s DUMP: science-biology: Installed: (none) Candidate: 1.0 Version table: 1.0 0 500 http://mirror.bm.debian.org/debian/ wheezy/main amd64 Packages 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'policy', 'science-biology'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', '-y', 'install', 'science-biology'] 2m55.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: abacas acedb-other acedb-other-belvu acedb-other-dotter adduser adun.app alien-hunter altree amap-align ampliconnoise ant ant-contrib ant-optional apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common apbs aspell aspell-en autodock autodock-vina autogrid autotools-dev ballview bauble bedtools binfmt-support binutils biomaj bioperl bioperl-run blast2 blcr-util blends-common blt bowtie bowtie2 boxshade build-essential bwa bzip2 ca-certificates ca-certificates-java cd-hit cdbs clonalframe clustalo clustalw clustalx cpp cpp-4.7 critterding curl dbus default-jre-headless dialign dialign-tx dialign-tx-data dictionaries-common disulfinder disulfinder-data dmidecode dotur dpkg-dev dssp embassy-domainatrix embassy-domalign embassy-domsearch emboss emboss-data emboss-lib exonerate fakeroot fastdnaml fastjar fastlink fasttree fastx-toolkit ffindex fftw2 figtree file filo fontconfig fontconfig-config fonts-droid fonts-freefont-ttf fonts-liberation fonts-lyx freeglut3 g++ g++-4.7 gamgi garlic gawk gbrowse gcc gcc-4.7 gdpc gentle gff2aplot gff2ps gfortran gfortran-4.7 ghemical ghostscript gir1.2-glib-2.0 glam2 gnuplot gnuplot-nox gnustep-back-common gnustep-back0.20 gnustep-back0.20-art gnustep-base-common gnustep-base-runtime gnustep-common gnustep-gpbs gnustep-gui-common gnustep-gui-runtime graphviz grinder groff groff-base gromacs gromacs-data gsfonts heirloom-mailx hhsuite hhsuite-data hicolor-icon-theme hmmer icedtea-6-jre-cacao icedtea-6-jre-jamvm icedtea-netx icedtea-netx-common ifupdown imagemagick imagemagick-common infernal iproute jalview jarwrapper java-common java-wrappers javahelp2 javascript-common jellyfish jmol jmol-applet junit junit4 kalign krb5-locales laptop-detect last-align lesstif2 libace-perl libai-fann-perl libaio1 libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libalgorithm-munkres-perl libao-common libao4 libapache-dbi-perl libapache-mime4j-java libapache-pom-java libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libart-2.0-2 libasound2 libaspell15 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatm1 libaudio2 libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libb-hooks-endofscope-perl libbackport-util-concurrent-java libball1.4 libball1.4-data libballview1.4 libbcmail-java libbcprov-java libbctsp-java libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-dev libblas3 libboost-date-time1.49.0 libboost-filesystem1.49.0 libboost-iostreams1.49.0 libboost-program-options1.49.0 libboost-regex1.49.0 libboost-system1.49.0 libboost-thread1.49.0 libbsd-resource-perl libbsd0 libbytecode-java libbz2-dev libc-dev-bin libc6-dev libcaca0 libcache-cache-perl libcairo2 libcap2 libcarp-clan-perl libcastor-core-java libcastor-xml-java libcbf0 libcdt4 libcgi-session-perl libcgraph5 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcommon-sense-perl libcommons-cli-java libcommons-codec-java libcommons-collections-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-lang-java libcommons-logging-java libcommons-net2-java libcommons-parent-java libcommons-pool-java libconvert-binary-c-perl libconvert-binhex-perl libcr0 libcroco3 libcrypt-ssleay-perl libcsiro0 libcups2 libcupsimage2 libcurl3 libcvector2 libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-globaldestruction-perl libdevel-partialdump-perl libdevel-symdump-perl libdirectfb-1.2-9 libdjvulibre-text libdjvulibre21 libdom4j-java libdpkg-perl libdrm-intel1 libdrm-nouveau1a libdrm-radeon1 libdrm2 libedit2 libencode-locale-perl liberror-perl libeval-closure-perl libexiv2-12 libexpat1 libfann2 libfcgi-perl libffi5 libffindex0 libfftw3-3 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libflac8 libflite1 libfont-afm-perl libfontconfig1 libfontenc1 libfreehep-export-java libfreehep-graphics2d-java libfreehep-graphicsio-emf-java libfreehep-graphicsio-java libfreehep-graphicsio-pdf-java libfreehep-graphicsio-ps-java libfreehep-graphicsio-svg-java libfreehep-graphicsio-swf-java libfreehep-graphicsio-tests-java libfreehep-io-java libfreehep-swing-java libfreehep-util-java libfreehep-xml-java libfreetype6 libfreezethaw-perl libftgl2 libg20 libgcj-common libgcrypt11 libgd-gd2-perl libgd-graph-perl libgd-svg-perl libgd-text-perl libgd2-xpm libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgeronimo-jta-1.1-spec-java libgetopt-euclid-perl libgfortran3 libghemical-data libghemical5 libgif4 libgirepository-1.0-1 libgl1-mesa-dri libgl1-mesa-glx libglade2-0 libglapi-mesa libglew1.7 libglib2.0-0 libglib2.0-data libglu1-mesa libgmp10 libgnuinet-java libgnujaf-java libgnumail-java libgnustep-base1.22 libgnustep-gui0.20 libgnutls26 libgomp1 libgpg-error0 libgpm2 libgraph-perl libgraph4 libgraphviz-perl libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libgtextutils0 libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgtkglext1 libgvc5 libgvpr1 libhamcrest-java libhdf4-0-alt libheap-perl libhmsbeagle1 libhpdf-2.2.1 libhsqldb-java libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-template-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttpclient-java libhttpcore-java libhttpmime-java libibverbs1 libice-dev libice6 libicu48 libidn11 libijs-0.35 libilmbase6 libint1 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libitext5-java libitm1 libjaba-client-java libjam-java libjas-plotter-java libjasper1 libjava-xmlbuilder-java libjaxen-java libjaxme-java libjbig0 libjbig2dec0 libjcode-pm-perl libjcommon-java libjdom1-java libjebl2-java libjets3t-java libjgoodies-forms-java libjmol-java libjpeg8 libjpeg8-dev libjs-jquery libjs-prototype libjs-scriptaculous libjs-underscore libjsch-java libjson-perl libjson-xs-perl libjson0 libjswingreader-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms1 liblcms2-2 libldap-2.4-2 liblensfun-data liblensfun0 liblist-moreutils-perl liblog4j1.2-java liblqr-1-0 libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmagickcore5 libmagickcore5-extra libmagickwand5 libmailtools-perl libmaloc1 libmath-derivative-perl libmath-random-mt-perl libmath-spline-perl libmath-tamuanova-perl libmiglayout-java libmime-tools-perl libmldbm-perl libmng1 libmodule-implementation-perl libmodule-runtime-perl libmoose-perl libmopac7-1gf libmpc2 libmpfr4 libmro-compat-perl libmysql-java libmysqlclient18 libnamespace-clean-perl libnb-org-openide-util-java libnb-org-openide-util-lookup-java libncbi6 libncurses5-dev libncursesw5 libnet-dbus-perl libnet-http-perl libnet-ssleay-perl libnetpbm10 libnspr4 libnss3 libnuma1 libobjc4 libogg0 liboglappth2 libole-storage-lite-perl libopenbabel4 libopenexr6 libopengl-perl libopenmpi1.3 liboro-java libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre3 libpcre3-dev libpcrecpp0 libpcsclite1 libpdl-stats-perl libperl5.14 libperlio-gzip-perl libpipeline1 libpixman-1-0 libplplot11 libpng12-0 libpng12-dev libpostscript-perl libpq5 libprocps0 libproj0 libpthread-stubs0 libpthread-stubs0-dev libpulse0 libpython2.7 libqhull5 libqsastime0 libqt4-network libqt4-opengl libqt4-sql libqt4-sql-mysql libqt4-svg libqt4-test libqt4-xml libqtcore4 libqtdbus4 libqtgui4 libquadmath0 libreadline-dev libreadline6-dev libregexp-java librg-reprof-bundle-perl librg-utils-perl librsvg2-2 librsvg2-common librtmp0 libruby1.9.1 libsam-java libsasl2-2 libsasl2-modules libsaxonb-java libsc-data libsc7 libsdl1.2debian libservlet2.5-java libset-scalar-perl libsigsegv2 libsm-dev libsm6 libsndfile1 libsoap-lite-perl libsocket-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsprng2 libsqlite0 libsqlite3-0 libsquizz libssh2-1 libssl1.0.0 libstaden-read1 libstatistics-descriptive-perl libstdc++6-4.7-dev libsub-exporter-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libswitch-perl libsystemd-login0 libtablelayout-java libtamuanova-0.2 libtask-weaken-perl libtasn1-3 libtcmalloc-minimal4 libterm-readkey-perl libterm-readline-gnu-perl libthai-data libthai0 libtie-ixhash-perl libtiff4 libtimedate-perl libtinfo-dev libtinyxml2.6.2 libtorque2 libtree-dagnode-perl libtry-tiny-perl libts-0.0-0 libunicode-map-perl liburi-perl libutempter0 libvamsas-client-java libvariable-magic-perl libvibrant6a libvorbis0a libvorbisenc2 libvte-common libvte9 libwmf0.2-7 libwrap0 libwsdl4j-java libwww-perl libwww-robotrules-perl libwxbase2.8-0 libwxgtk2.8-0 libx11-6 libx11-data libx11-dev libx11-doc libx11-protocol-perl libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-glx0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxdot4 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxom-java libxp6 libxpm4 libxpp2-java libxpp3-java libxrandr2 libxrender1 libxslt1.1 libxss1 libxt-dev libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-perl libyaml-syck-perl linux-libc-dev loki lynx lynx-cur mafft make manpages manpages-dev maq maqview massxpert massxpert-data med-bio med-config med-tasks melting menu mime-support mipe mira-assembler mknfonts.tool mlv-smile mothur mpi-default-bin mpqc mrbayes mummer muscle mustang mysql-client-5.5 mysql-common mysql-server mysql-server-5.5 mysql-server-core-5.5 ncbi-blast+ ncbi-data ncbi-epcr ncbi-tools-bin ncbi-tools-x11 ncoils neobio netbase netpbm njplot openjdk-6-jdk openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib openmpi-bin openmpi-checkpoint openmpi-common openssl patch pdl perl perl-doc perl-modules perl-tk perlprimer phyml picard-tools plasmidomics plink poa poppler-data populations pp-popularity-contest primer3 probalign probcons procps proda profnet-bval profnet-chop profnet-con profnet-isis profnet-md profnet-norsnet profnet-prof profnet-snapfun profphd profphd-net profphd-utils proftmb proj-data psmisc psutils pymol pynast python python-ball python-ballview python-cairo python-cogent python-dateutil python-egenix-mxdatetime python-egenix-mxtools python-gdata python-gi python-glade2 python-gobject python-gobject-2 python-gtk2 python-imaging python-lxml python-mako python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-mysqldb python-numpy python-pmw python-pyparsing python-pysqlite2 python-sip python-sqlalchemy python-sqlalchemy-ext python-support python-tk python-tz python2.7 python2.7-minimal qiime r-base-core r-base-dev r-bioc-cummerbund r-bioc-hilbertvis r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-digest r-cran-foreign r-cran-g.data r-cran-genabel r-cran-ggplot2 r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-multicore r-cran-nlme r-cran-nnet r-cran-plyr r-cran-proto r-cran-qtl r-cran-rcolorbrewer r-cran-reshape r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-spatial r-cran-stringr r-cran-survival r-doc-html r-other-bio3d r-other-mott-happy r-recommended rasmol raster3d raxml readseq reprof rnahybrid ruby ruby1.9.1 samtools science-config science-tasks sgml-base shared-mime-info sibsim4 sigma-align sim4 sqlite3 squizz sra-toolkit sra-toolkit-libs0 ssake ssl-cert staden-io-lib-utils t-coffee tabix tasksel tasksel-data tcl8.5 tcpd theseus tigr-glimmer tk8.5 tm-align transtermhp tree-puzzle tree-puzzle-doc treeviewx tsconf ttf-dejavu ttf-dejavu-core ttf-dejavu-extra ttf-freefont ttf-liberation tzdata-java ufraw-batch unzip vcftools velvet wise wwwconfig-common x11-common x11-utils x11-xserver-utils x11proto-core-dev x11proto-input-dev x11proto-kb-dev xbitmaps xdg-utils xml-core xorg-sgml-doctools xterm xtrans-dev zip zlib1g-dev Suggested packages: altree-examples default-jdk java-compiler java-sdk ant-gcj ant-doc libbsf-java libxalan2-java libjaxp1.3-java jython antlr libbcel-java libjdepend-java libcommons-net-java javacc ant-optional-gcj www-browser apache2-doc apache2-suexec apache2-suexec-custom aspell-doc spellutils autodocktools binutils-doc gmap paml molphy phylip ensembl ncbi-rrna-data blends-doc blt-demo bowtie-examples bowtie2-examples seaview xfig texlive-latex-extra bzip2-doc devscripts cpp-doc gcc-4.7-locales dbus-x11 default-jre ispell emacsen-common jed-extra debian-keyring embassy emboss-doc emboss-test fastlink-doc fftw-dev mpi-defaults-bin g++-multilib g++-4.7-multilib gcc-4.7-doc libstdc++6-4.7-dbg gamgi-data gamgi-doc garlic-doc openbabel gawk-doc gbrowse-data gbrowse-calign libfile-nfslock-perl gcc-multilib autoconf automake1.9 libtool flex bison gdb gcc-doc gcc-4.7-multilib libmudflap0-4.7-dev libgcc1-dbg libgomp1-dbg libitm1-dbg libquadmath0-dbg libmudflap0-dbg libcloog-ppl0 libppl-c2 libppl7 binutils-gold gdpc-examples gqview postscript-viewer gfortran-multilib gfortran-doc gfortran-4.7-multilib gfortran-4.7-doc libgfortran3-dbg ghostscript-cups ghostscript-x hpijs gnuplot-doc gnustep-base-doc graphviz-doc tcsh c-shell exim4 mail-transport-agent hmmer-doc isc-dhcp-client dhcp-client ppp rdnssd net-tools imagemagick-doc autotrace cups-bsd lpr lprng enscript ffmpeg gimp grads hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig iproute-doc equivs javahelp2-doc junit-doc libesd0 libesd-alsa0 libasound2-plugins nas libaxis-java-doc libbackport-util-concurrent-java-doc java-virtual-machine libbcmail-java-doc libbcmail-java-gcj libbcprov-java-doc libbcprov-java-gcj libbctsp-java-doc libbctsp-java-gcj libmath-random-perl libxml-sax-expatxs-perl libjgrapht-java libbiojava-java-doc glibc-doc libcastor-java-doc libcommons-collections-java-doc libcommons-dbcp-java-doc libcommons-discovery-java-doc libcommons-httpclient-java-doc libcommons-lang-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java libcommons-net2-java-doc blcr-dkms cups-common libdom4j-java-doc exiv2 libfann-dev libfann-doc libfftw3-bin libfftw3-dev alsa-base rng-tools ttf-dustin libgd-tools libgeronimo-jta-java-doc libglide3 glew-utils libgnumail-java-doc gpm gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html krb5-doc krb5-user gvfs libhdf4-doc libhdf4-alt-dev hdf4-tools libnetcdf4 libhsqldb-java-doc libhsqldb-java-gcj libdata-dump-perl libipc-sharedcache-perl libice-doc libjasper-runtime libjava-xmlbuilder-java-doc libjaxme-java-doc libjcommon-java-doc libjdom1-java-doc libjgoodies-forms-java-doc libjmol-java-doc libjson-pp-perl liblcms-utils liblcms2-utils liblog4j1.2-java-doc libjboss-jmx-java ncurses-doc libmime-base64-perl uuid ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp libscalar-number-perl pciutils pcscd plplot11-driver-xwin plplot11-driver-gd plplot11-driver-cairo plplot11-driver-qt plplot11-driver-wxwidgets plplot-tcl proj-bin pulseaudio libqt4-dev qt4-qtconfig librsvg2-bin libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal libsaxonb-java-doc libsm-doc libmime-lite-perl libnet-jabber-perl libstdc++6-4.7-doc libauthen-ntlm-perl libgnomeprintui2.2-0 libxcb-doc libxerces2-java-doc libxerces2-java-gcj libxml-commons-resolver1.1-java-doc libunicode-map8-perl libunicode-string-perl xml-twig-tools libxom-java-doc libxt-doc libyaml-shell-perl loki-doc make-doc man-browser massxpert-doc abyss act amos-assembler amoscmp anfo apollo arachne arb artemis asap augustus axparafit axpcoords bagphenotype bambus bamtools beads beast-mcmc big-blast bigsdb blimps-utils blixem btk-core cactus caftools cain cap3 cdbfasta cdna-db cinema circos clonalorigin clustalw-mpi cluster3 cmap coalesce codonw compclust concavity conservation-code contralign coot copycat crossbow cufflinks cytoscape das-proserver dazzle decipher e-hive ecell edtsurf eigensoft elph embassy-phylip emboss-explorer est-db estferret estscan exalt excavator fas fastqc figaro finex fluctuate forester forge galaxy gassst gbioseq gbrowse-syn genemark genesplicer genetrack genezilla genographer genometools glimmerhmm gmv grogui haploview hawkeye hexamer hilbertvisgui hmmer2 igv jbrowse jigsaw jstreeview kempbasu lagan lamarc logol-bin logomat-m ltrsift lucy macs mage2tab maker2 martj maude mauvealigner maxd melting-gui meme mesquite metarep microbiomeutil migrate minimus mirbase mobyle molekel mosaik-aligner mozilla-biofox mpsqed msatfinder mugsy mummergpu murasaki mview ncbi-seg ngila norsnet norsp nw-align oases obo-edit oligoarrayaux omegamap operondb pal2nal partigene patman patristic pcma pdb2pqr pfaat pftools phagefinder phpphylotree phy-spread phylographer phyloviz-core phylowin plato prank predictnls predictprotein proalign profbval profisis profit prot4est pscan-tfbs psipred pyrophosphate-tools python-orange python-rdkit python-reaper qtlcart r-ape r-other-valdar-bagphenotype.library raccoon ray-denovoassembler rbs-finder rdp-classifier recombine repeatmasker rmblast roche454ace2caf rose rosetta seq-gen seqan-apps seqtk sequenceconverter.app sga smalt snap snpeff soapdenovo spice splitstree spread-phy sra-sdk ssaha strap tacg taverna taxinspector tetra tigr-assembler tigr-glimmer-mg tophat trace2dbest tracetuner treebuilder3d treetime tripal trnascan-se twain ugene uniprime vegan vienna-rna vmd wgs-assembler x-tandem-pipeline zalign zodiac-zeden menu-l10n gksu kdebase-bin kdebase-runtime ktsuss sux mira-examples mira-doc mpqc-support mrbayes-doc mustang-testdata tinyca openjdk-6-demo openjdk-6-source visualvm icedtea-plugin libnss-mdns sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei ttf-wqy-zenhei ttf-indic-fonts diffutils-doc libpgplot-perl libastro-fits-header-perl libinline-perl libplplot-dev doc-base libextutils-f77-perl libdevel-repl-perl libpod-plainer-perl perlprimer-doc poppler-utils fonts-arphic-ukai fonts-arphic-uming fonts-unfonts-core probcons-extra python-doc python-egenix-mxdatetime-dbg python-egenix-mxdatetime-doc python-egenix-mxtools-dbg python-egenix-mxtools-doc python-gdata-doc python-gi-cairo python-gtk2-doc python-gobject-2-dbg python-imaging-doc python-imaging-dbg python-lxml-dbg python-beaker python-mako-doc dvipng ipython python-configobj python-excelerator python-matplotlib-doc python-qt4 python-scipy python-traits python-wxgtk2.8 texlive-extra-utils python-mysqldb-dbg python-numpy-doc python-numpy-dbg python-nose python-dev python-pmw-doc python-pysqlite2-doc python-pysqlite2-dbg python-sqlalchemy-doc python-psycopg2 python-kinterbasdb python-pymssql tix python-tk-dbg python2.7-doc ess r-doc-info r-doc-pdf r-mathlib r-base-html debhelper texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-latex-recommended texinfo texi2html r-cran-rmysql r-cran-genetics r-cran-haplo.stats r-cran-qvalue r-cran-snow r-cran-runit r-cran-ncdf r-cran-bigmemory r-cran-rocr rasmol-doc raster3d-doc ri ruby-dev ruby1.9.1-examples ri1.9.1 ruby1.9.1-dev ruby-switch avida-base genesis med-bio-dev sgml-base-doc sqlite3-doc ssake-examples openssl-blacklist t-coffee-doc t-coffee-examples tcl-tclreadline clustlaw treetool ufraw velvet-example wise-doc mysql-client postgresql-client mesa-utils nickle cairo-5c xorg-docs-core gvfs-bin xfonts-cyrillic Recommended packages: libfile-spec-perl libstorable-perl mailx profchop profcon metadisorder snapfun chimeraslayer r-cran-vr The following NEW packages will be installed: abacas acedb-other acedb-other-belvu acedb-other-dotter adduser adun.app alien-hunter altree amap-align ampliconnoise ant ant-contrib ant-optional apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common apbs aspell aspell-en autodock autodock-vina autogrid autotools-dev ballview bauble bedtools binfmt-support binutils biomaj bioperl bioperl-run blast2 blcr-util blends-common blt bowtie bowtie2 boxshade build-essential bwa bzip2 ca-certificates ca-certificates-java cd-hit cdbs clonalframe clustalo clustalw clustalx cpp cpp-4.7 critterding curl dbus default-jre-headless dialign dialign-tx dialign-tx-data dictionaries-common disulfinder disulfinder-data dmidecode dotur dpkg-dev dssp embassy-domainatrix embassy-domalign embassy-domsearch emboss emboss-data emboss-lib exonerate fakeroot fastdnaml fastjar fastlink fasttree fastx-toolkit ffindex fftw2 figtree file filo fontconfig fontconfig-config fonts-droid fonts-freefont-ttf fonts-liberation fonts-lyx freeglut3 g++ g++-4.7 gamgi garlic gawk gbrowse gcc gcc-4.7 gdpc gentle gff2aplot gff2ps gfortran gfortran-4.7 ghemical ghostscript gir1.2-glib-2.0 glam2 gnuplot gnuplot-nox gnustep-back-common gnustep-back0.20 gnustep-back0.20-art gnustep-base-common gnustep-base-runtime gnustep-common gnustep-gpbs gnustep-gui-common gnustep-gui-runtime graphviz grinder groff groff-base gromacs gromacs-data gsfonts heirloom-mailx hhsuite hhsuite-data hicolor-icon-theme hmmer icedtea-6-jre-cacao icedtea-6-jre-jamvm icedtea-netx icedtea-netx-common ifupdown imagemagick imagemagick-common infernal iproute jalview jarwrapper java-common java-wrappers javahelp2 javascript-common jellyfish jmol jmol-applet junit junit4 kalign krb5-locales laptop-detect last-align lesstif2 libace-perl libai-fann-perl libaio1 libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libalgorithm-munkres-perl libao-common libao4 libapache-dbi-perl libapache-mime4j-java libapache-pom-java libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libart-2.0-2 libasound2 libaspell15 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatm1 libaudio2 libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libb-hooks-endofscope-perl libbackport-util-concurrent-java libball1.4 libball1.4-data libballview1.4 libbcmail-java libbcprov-java libbctsp-java libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-dev libblas3 libboost-date-time1.49.0 libboost-filesystem1.49.0 libboost-iostreams1.49.0 libboost-program-options1.49.0 libboost-regex1.49.0 libboost-system1.49.0 libboost-thread1.49.0 libbsd-resource-perl libbsd0 libbytecode-java libbz2-dev libc-dev-bin libc6-dev libcaca0 libcache-cache-perl libcairo2 libcap2 libcarp-clan-perl libcastor-core-java libcastor-xml-java libcbf0 libcdt4 libcgi-session-perl libcgraph5 libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcommon-sense-perl libcommons-cli-java libcommons-codec-java libcommons-collections-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-lang-java libcommons-logging-java libcommons-net2-java libcommons-parent-java libcommons-pool-java libconvert-binary-c-perl libconvert-binhex-perl libcr0 libcroco3 libcrypt-ssleay-perl libcsiro0 libcups2 libcupsimage2 libcurl3 libcvector2 libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-globaldestruction-perl libdevel-partialdump-perl libdevel-symdump-perl libdirectfb-1.2-9 libdjvulibre-text libdjvulibre21 libdom4j-java libdpkg-perl libdrm-intel1 libdrm-nouveau1a libdrm-radeon1 libdrm2 libedit2 libencode-locale-perl liberror-perl libeval-closure-perl libexiv2-12 libexpat1 libfann2 libfcgi-perl libffi5 libffindex0 libfftw3-3 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libflac8 libflite1 libfont-afm-perl libfontconfig1 libfontenc1 libfreehep-export-java libfreehep-graphics2d-java libfreehep-graphicsio-emf-java libfreehep-graphicsio-java libfreehep-graphicsio-pdf-java libfreehep-graphicsio-ps-java libfreehep-graphicsio-svg-java libfreehep-graphicsio-swf-java libfreehep-graphicsio-tests-java libfreehep-io-java libfreehep-swing-java libfreehep-util-java libfreehep-xml-java libfreetype6 libfreezethaw-perl libftgl2 libg20 libgcj-common libgcrypt11 libgd-gd2-perl libgd-graph-perl libgd-svg-perl libgd-text-perl libgd2-xpm libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgeronimo-jta-1.1-spec-java libgetopt-euclid-perl libgfortran3 libghemical-data libghemical5 libgif4 libgirepository-1.0-1 libgl1-mesa-dri libgl1-mesa-glx libglade2-0 libglapi-mesa libglew1.7 libglib2.0-0 libglib2.0-data libglu1-mesa libgmp10 libgnuinet-java libgnujaf-java libgnumail-java libgnustep-base1.22 libgnustep-gui0.20 libgnutls26 libgomp1 libgpg-error0 libgpm2 libgraph-perl libgraph4 libgraphviz-perl libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libgtextutils0 libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgtkglext1 libgvc5 libgvpr1 libhamcrest-java libhdf4-0-alt libheap-perl libhmsbeagle1 libhpdf-2.2.1 libhsqldb-java libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-template-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttpclient-java libhttpcore-java libhttpmime-java libibverbs1 libice-dev libice6 libicu48 libidn11 libijs-0.35 libilmbase6 libint1 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libitext5-java libitm1 libjaba-client-java libjam-java libjas-plotter-java libjasper1 libjava-xmlbuilder-java libjaxen-java libjaxme-java libjbig0 libjbig2dec0 libjcode-pm-perl libjcommon-java libjdom1-java libjebl2-java libjets3t-java libjgoodies-forms-java libjmol-java libjpeg8 libjpeg8-dev libjs-jquery libjs-prototype libjs-scriptaculous libjs-underscore libjsch-java libjson-perl libjson-xs-perl libjson0 libjswingreader-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms1 liblcms2-2 libldap-2.4-2 liblensfun-data liblensfun0 liblist-moreutils-perl liblog4j1.2-java liblqr-1-0 libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmagickcore5 libmagickcore5-extra libmagickwand5 libmailtools-perl libmaloc1 libmath-derivative-perl libmath-random-mt-perl libmath-spline-perl libmath-tamuanova-perl libmiglayout-java libmime-tools-perl libmldbm-perl libmng1 libmodule-implementation-perl libmodule-runtime-perl libmoose-perl libmopac7-1gf libmpc2 libmpfr4 libmro-compat-perl libmysql-java libmysqlclient18 libnamespace-clean-perl libnb-org-openide-util-java libnb-org-openide-util-lookup-java libncbi6 libncurses5-dev libncursesw5 libnet-dbus-perl libnet-http-perl libnet-ssleay-perl libnetpbm10 libnspr4 libnss3 libnuma1 libobjc4 libogg0 liboglappth2 libole-storage-lite-perl libopenbabel4 libopenexr6 libopengl-perl libopenmpi1.3 liboro-java libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre3 libpcre3-dev libpcrecpp0 libpcsclite1 libpdl-stats-perl libperl5.14 libperlio-gzip-perl libpipeline1 libpixman-1-0 libplplot11 libpng12-0 libpng12-dev libpostscript-perl libpq5 libprocps0 libproj0 libpthread-stubs0 libpthread-stubs0-dev libpulse0 libpython2.7 libqhull5 libqsastime0 libqt4-network libqt4-opengl libqt4-sql libqt4-sql-mysql libqt4-svg libqt4-test libqt4-xml libqtcore4 libqtdbus4 libqtgui4 libquadmath0 libreadline-dev libreadline6-dev libregexp-java librg-reprof-bundle-perl librg-utils-perl librsvg2-2 librsvg2-common librtmp0 libruby1.9.1 libsam-java libsasl2-2 libsasl2-modules libsaxonb-java libsc-data libsc7 libsdl1.2debian libservlet2.5-java libset-scalar-perl libsigsegv2 libsm-dev libsm6 libsndfile1 libsoap-lite-perl libsocket-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsprng2 libsqlite0 libsqlite3-0 libsquizz libssh2-1 libssl1.0.0 libstaden-read1 libstatistics-descriptive-perl libstdc++6-4.7-dev libsub-exporter-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-graph-perl libsvg-perl libswitch-perl libsystemd-login0 libtablelayout-java libtamuanova-0.2 libtask-weaken-perl libtasn1-3 libtcmalloc-minimal4 libterm-readkey-perl libterm-readline-gnu-perl libthai-data libthai0 libtie-ixhash-perl libtiff4 libtimedate-perl libtinfo-dev libtinyxml2.6.2 libtorque2 libtree-dagnode-perl libtry-tiny-perl libts-0.0-0 libunicode-map-perl liburi-perl libutempter0 libvamsas-client-java libvariable-magic-perl libvibrant6a libvorbis0a libvorbisenc2 libvte-common libvte9 libwmf0.2-7 libwrap0 libwsdl4j-java libwww-perl libwww-robotrules-perl libwxbase2.8-0 libwxgtk2.8-0 libx11-6 libx11-data libx11-dev libx11-doc libx11-protocol-perl libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-glx0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxdot4 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxom-java libxp6 libxpm4 libxpp2-java libxpp3-java libxrandr2 libxrender1 libxslt1.1 libxss1 libxt-dev libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-perl libyaml-syck-perl linux-libc-dev loki lynx lynx-cur mafft make manpages manpages-dev maq maqview massxpert massxpert-data med-bio med-config med-tasks melting menu mime-support mipe mira-assembler mknfonts.tool mlv-smile mothur mpi-default-bin mpqc mrbayes mummer muscle mustang mysql-client-5.5 mysql-common mysql-server mysql-server-5.5 mysql-server-core-5.5 ncbi-blast+ ncbi-data ncbi-epcr ncbi-tools-bin ncbi-tools-x11 ncoils neobio netbase netpbm njplot openjdk-6-jdk openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib openmpi-bin openmpi-checkpoint openmpi-common openssl patch pdl perl perl-doc perl-modules perl-tk perlprimer phyml picard-tools plasmidomics plink poa poppler-data populations pp-popularity-contest primer3 probalign probcons procps proda profnet-bval profnet-chop profnet-con profnet-isis profnet-md profnet-norsnet profnet-prof profnet-snapfun profphd profphd-net profphd-utils proftmb proj-data psmisc psutils pymol pynast python python-ball python-ballview python-cairo python-cogent python-dateutil python-egenix-mxdatetime python-egenix-mxtools python-gdata python-gi python-glade2 python-gobject python-gobject-2 python-gtk2 python-imaging python-lxml python-mako python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-mysqldb python-numpy python-pmw python-pyparsing python-pysqlite2 python-sip python-sqlalchemy python-sqlalchemy-ext python-support python-tk python-tz python2.7 python2.7-minimal qiime r-base-core r-base-dev r-bioc-cummerbund r-bioc-hilbertvis r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-digest r-cran-foreign r-cran-g.data r-cran-genabel r-cran-ggplot2 r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-multicore r-cran-nlme r-cran-nnet r-cran-plyr r-cran-proto r-cran-qtl r-cran-rcolorbrewer r-cran-reshape r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-spatial r-cran-stringr r-cran-survival r-doc-html r-other-bio3d r-other-mott-happy r-recommended rasmol raster3d raxml readseq reprof rnahybrid ruby ruby1.9.1 samtools science-biology science-config science-tasks sgml-base shared-mime-info sibsim4 sigma-align sim4 sqlite3 squizz sra-toolkit sra-toolkit-libs0 ssake ssl-cert staden-io-lib-utils t-coffee tabix tasksel tasksel-data tcl8.5 tcpd theseus tigr-glimmer tk8.5 tm-align transtermhp tree-puzzle tree-puzzle-doc treeviewx tsconf ttf-dejavu ttf-dejavu-core ttf-dejavu-extra ttf-freefont ttf-liberation tzdata-java ufraw-batch unzip vcftools velvet wise wwwconfig-common x11-common x11-utils x11-xserver-utils x11proto-core-dev x11proto-input-dev x11proto-kb-dev xbitmaps xdg-utils xml-core xorg-sgml-doctools xterm xtrans-dev zip zlib1g-dev 0 upgraded, 922 newly installed, 0 to remove and 0 not upgraded. Need to get 703 MB of archives. After this operation, 2147 MB of additional disk space will be used. 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http://mirror.bm.debian.org/debian/ wheezy/main libedit2 amd64 2.11-20080614-5 [72.9 kB] Get:13 http://mirror.bm.debian.org/debian/ wheezy/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:14 http://mirror.bm.debian.org/debian/ wheezy/main libgcrypt11 amd64 1.5.0-5+deb7u4 [301 kB] Get:15 http://mirror.bm.debian.org/debian/ wheezy/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:16 http://mirror.bm.debian.org/debian/ wheezy/main libtasn1-3 amd64 2.13-2+deb7u2 [67.8 kB] Get:17 http://mirror.bm.debian.org/debian/ wheezy/main libgnutls26 amd64 2.12.20-8+deb7u5 [620 kB] Get:18 http://mirror.bm.debian.org/debian/ wheezy/main libgpm2 amd64 1.20.4-6 [35.8 kB] Get:19 http://mirror.bm.debian.org/debian/ wheezy/main libkeyutils1 amd64 1.5.5-3+deb7u1 [8664 B] Get:20 http://mirror.bm.debian.org/debian/ wheezy/main libkrb5support0 amd64 1.10.1+dfsg-5+deb7u7 [50.5 kB] Get:21 http://mirror.bm.debian.org/debian/ wheezy/main libk5crypto3 amd64 1.10.1+dfsg-5+deb7u7 [113 kB] Get:22 http://mirror.bm.debian.org/debian/ wheezy/main libkrb5-3 amd64 1.10.1+dfsg-5+deb7u7 [394 kB] Get:23 http://mirror.bm.debian.org/debian/ wheezy/main libgssapi-krb5-2 amd64 1.10.1+dfsg-5+deb7u7 [150 kB] Get:24 http://mirror.bm.debian.org/debian/ wheezy/main libidn11 amd64 1.25-2 [178 kB] Get:25 http://mirror.bm.debian.org/debian/ wheezy/main libsasl2-2 amd64 2.1.25.dfsg1-6+deb7u1 [120 kB] Get:26 http://mirror.bm.debian.org/debian/ wheezy/main libldap-2.4-2 amd64 2.4.31-2+deb7u2 [243 kB] Get:27 http://mirror.bm.debian.org/debian/ wheezy/main libmagic1 amd64 5.11-2+deb7u8 [205 kB] Get:28 http://mirror.bm.debian.org/debian/ wheezy/main libpcre3 amd64 1:8.30-5 [242 kB] Get:29 http://mirror.bm.debian.org/debian/ wheezy/main libsqlite3-0 amd64 3.7.13-1+deb7u2 [454 kB] Get:30 http://mirror.bm.debian.org/debian/ wheezy/main libwrap0 amd64 7.6.q-24 [62.4 kB] Get:31 http://mirror.bm.debian.org/debian/ wheezy/main libxml2 amd64 2.8.0+dfsg1-7+wheezy5 [906 kB] Get:32 http://mirror.bm.debian.org/debian/ wheezy/main bedtools amd64 2.16.1-1 [434 kB] Get:33 http://mirror.bm.debian.org/debian/ wheezy/main libdrm2 amd64 2.4.40-1~deb7u2 [459 kB] Get:34 http://mirror.bm.debian.org/debian/ wheezy/main libglapi-mesa amd64 8.0.5-4+deb7u2 [46.8 kB] Get:35 http://mirror.bm.debian.org/debian/ wheezy/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:36 http://mirror.bm.debian.org/debian/ wheezy/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:37 http://mirror.bm.debian.org/debian/ wheezy/main libxcb1 amd64 1.8.1-2+deb7u1 [50.2 kB] Get:38 http://mirror.bm.debian.org/debian/ wheezy/main libx11-data all 2:1.5.0-1+deb7u2 [194 kB] Get:39 http://mirror.bm.debian.org/debian/ wheezy/main libx11-6 amd64 2:1.5.0-1+deb7u2 [901 kB] Get:40 http://mirror.bm.debian.org/debian/ wheezy/main libx11-xcb1 amd64 2:1.5.0-1+deb7u2 [139 kB] Get:41 http://mirror.bm.debian.org/debian/ wheezy/main libxcb-glx0 amd64 1.8.1-2+deb7u1 [32.2 kB] Get:42 http://mirror.bm.debian.org/debian/ wheezy/main libxfixes3 amd64 1:5.0-4+deb7u1 [21.3 kB] Get:43 http://mirror.bm.debian.org/debian/ wheezy/main libxdamage1 amd64 1:1.1.3-2 [14.3 kB] Get:44 http://mirror.bm.debian.org/debian/ wheezy/main libxext6 amd64 2:1.3.1-2+deb7u1 [54.8 kB] Get:45 http://mirror.bm.debian.org/debian/ wheezy/main libxxf86vm1 amd64 1:1.1.2-1+deb7u1 [19.5 kB] Get:46 http://mirror.bm.debian.org/debian/ wheezy/main libgl1-mesa-glx amd64 8.0.5-4+deb7u2 [134 kB] Get:47 http://mirror.bm.debian.org/debian/ wheezy/main libxi6 amd64 2:1.6.1-1+deb7u1 [75.7 kB] Get:48 http://mirror.bm.debian.org/debian/ wheezy/main freeglut3 amd64 2.6.0-4 [141 kB] Get:49 http://mirror.bm.debian.org/debian/ wheezy/main libsigsegv2 amd64 2.9-4 [28.9 kB] Get:50 http://mirror.bm.debian.org/debian/ wheezy/main gawk amd64 1:4.0.1+dfsg-2.1 [972 kB] Get:51 http://mirror.bm.debian.org/debian/ wheezy/main imagemagick-common all 8:6.7.7.10-5+deb7u4 [128 kB] Get:52 http://mirror.bm.debian.org/debian/ wheezy/main last-align amd64 199-1 [455 kB] Get:53 http://mirror.bm.debian.org/debian/ wheezy/main libfreetype6 amd64 2.4.9-1.1+deb7u3 [452 kB] Get:54 http://mirror.bm.debian.org/debian/ wheezy/main x11-common all 1:7.7+3~deb7u1 [284 kB] Get:55 http://mirror.bm.debian.org/debian/ wheezy/main libice6 amd64 2:1.0.8-2 [63.1 kB] Get:56 http://mirror.bm.debian.org/debian/ wheezy/main libsm6 amd64 2:1.2.1-2 [34.2 kB] Get:57 http://mirror.bm.debian.org/debian/ wheezy/main libxp6 amd64 1:1.0.1-2+deb7u1 [24.1 kB] Get:58 http://mirror.bm.debian.org/debian/ wheezy/main libxt6 amd64 1:1.1.3-1+deb7u1 [212 kB] Get:59 http://mirror.bm.debian.org/debian/ wheezy/main lesstif2 amd64 1:0.95.2-1.1 [710 kB] Get:60 http://mirror.bm.debian.org/debian/ wheezy/main libaio1 amd64 0.3.109-3 [9150 B] Get:61 http://mirror.bm.debian.org/debian/ wheezy/main libart-2.0-2 amd64 2.3.21-2 [72.7 kB] Get:62 http://mirror.bm.debian.org/debian/ wheezy/main libasound2 amd64 1.0.25-4 [461 kB] Get:63 http://mirror.bm.debian.org/debian/ wheezy/main libasyncns0 amd64 0.8-4 [13.6 kB] Get:64 http://mirror.bm.debian.org/debian/ wheezy/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:65 http://mirror.bm.debian.org/debian/ wheezy/main libglib2.0-0 amd64 2.33.12+really2.32.4-5 [1838 kB] Get:66 http://mirror.bm.debian.org/debian/ wheezy/main libatk1.0-data all 2.4.0-2 [240 kB] Get:67 http://mirror.bm.debian.org/debian/ wheezy/main libatk1.0-0 amd64 2.4.0-2 [95.1 kB] Get:68 http://mirror.bm.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:69 http://mirror.bm.debian.org/debian/ wheezy/main ttf-dejavu-core all 2.33-3 [1021 kB] Get:70 http://mirror.bm.debian.org/debian/ wheezy/main fonts-freefont-ttf all 20120503-1 [6024 kB] Get:71 http://mirror.bm.debian.org/debian/ wheezy/main ttf-freefont all 20120503-1 [118 kB] Get:72 http://mirror.bm.debian.org/debian/ wheezy/main fontconfig-config all 2.9.0-7.1 [233 kB] Get:73 http://mirror.bm.debian.org/debian/ wheezy/main libfontconfig1 amd64 2.9.0-7.1 [300 kB] Get:74 http://mirror.bm.debian.org/debian/ wheezy/main libpixman-1-0 amd64 0.26.0-4+deb7u2 [427 kB] Get:75 http://mirror.bm.debian.org/debian/ wheezy/main libpng12-0 amd64 1.2.49-1+deb7u2 [191 kB] Get:76 http://mirror.bm.debian.org/debian/ wheezy/main libxcb-render0 amd64 1.8.1-2+deb7u1 [18.6 kB] Get:77 http://mirror.bm.debian.org/debian/ wheezy/main libxcb-shm0 amd64 1.8.1-2+deb7u1 [10.4 kB] Get:78 http://mirror.bm.debian.org/debian/ wheezy/main libxrender1 amd64 1:0.9.7-1+deb7u2 [32.9 kB] Get:79 http://mirror.bm.debian.org/debian/ wheezy/main libcairo2 amd64 1.12.2-3 [912 kB] Get:80 http://mirror.bm.debian.org/debian/ wheezy/main libjpeg8 amd64 8d-1+deb7u1 [138 kB] Get:81 http://mirror.bm.debian.org/debian/ wheezy/main libjasper1 amd64 1.900.1-13+deb7u4 [160 kB] Get:82 http://mirror.bm.debian.org/debian/ wheezy/main libjbig0 amd64 2.0-2+deb7u1 [32.6 kB] Get:83 http://mirror.bm.debian.org/debian/ wheezy/main libtiff4 amd64 3.9.6-11 [202 kB] Get:84 http://mirror.bm.debian.org/debian/ wheezy/main libgdk-pixbuf2.0-common all 2.26.1-1+deb7u3 [287 kB] Get:85 http://mirror.bm.debian.org/debian/ wheezy/main libgdk-pixbuf2.0-0 amd64 2.26.1-1+deb7u3 [160 kB] Get:86 http://mirror.bm.debian.org/debian/ wheezy/main libgtk2.0-common all 2.24.10-2 [3081 kB] Get:87 http://mirror.bm.debian.org/debian/ wheezy/main libavahi-common-data amd64 0.6.31-2 [135 kB] Get:88 http://mirror.bm.debian.org/debian/ wheezy/main libavahi-common3 amd64 0.6.31-2 [54.6 kB] Get:89 http://mirror.bm.debian.org/debian/ wheezy/main libdbus-1-3 amd64 1.6.8-1+deb7u6 [174 kB] Get:90 http://mirror.bm.debian.org/debian/ wheezy/main libavahi-client3 amd64 0.6.31-2 [59.5 kB] Get:91 http://mirror.bm.debian.org/debian/ wheezy/main libcups2 amd64 1.5.3-5+deb7u6 [256 kB] Get:92 http://mirror.bm.debian.org/debian/ wheezy/main libthai-data all 0.1.18-2 [154 kB] Get:93 http://mirror.bm.debian.org/debian/ wheezy/main libdatrie1 amd64 0.2.5-3 [28.6 kB] Get:94 http://mirror.bm.debian.org/debian/ wheezy/main libthai0 amd64 0.1.18-2 [42.3 kB] Get:95 http://mirror.bm.debian.org/debian/ wheezy/main libxft2 amd64 2.3.1-1 [61.0 kB] Get:96 http://mirror.bm.debian.org/debian/ wheezy/main fontconfig amd64 2.9.0-7.1 [348 kB] Get:97 http://mirror.bm.debian.org/debian/ wheezy/main libpango1.0-0 amd64 1.30.0-1 [461 kB] Get:98 http://mirror.bm.debian.org/debian/ wheezy/main libxcomposite1 amd64 1:0.4.3-2 [16.6 kB] Get:99 http://mirror.bm.debian.org/debian/ wheezy/main libxcursor1 amd64 1:1.1.13-1+deb7u1 [27.1 kB] Get:100 http://mirror.bm.debian.org/debian/ wheezy/main libxinerama1 amd64 2:1.1.2-1+deb7u1 [16.9 kB] Get:101 http://mirror.bm.debian.org/debian/ wheezy/main libxrandr2 amd64 2:1.3.2-2+deb7u1 [33.0 kB] Get:102 http://mirror.bm.debian.org/debian/ wheezy/main shared-mime-info amd64 1.0-1+b1 [595 kB] Get:103 http://mirror.bm.debian.org/debian/ wheezy/main libgtk2.0-0 amd64 2.24.10-2 [2200 kB] Get:104 http://mirror.bm.debian.org/debian/ wheezy/main libatk-wrapper-java all 0.30.4-3 [31.2 kB] Get:105 http://mirror.bm.debian.org/debian/ wheezy/main libatk-wrapper-java-jni amd64 0.30.4-3 [31.8 kB] Get:106 http://mirror.bm.debian.org/debian/ wheezy/main libatm1 amd64 1:2.5.1-1.5 [73.3 kB] Get:107 http://mirror.bm.debian.org/debian/ wheezy/main libaudio2 amd64 1.9.3-5wheezy1 [87.1 kB] Get:108 http://mirror.bm.debian.org/debian/ wheezy/main libcaca0 amd64 0.99.beta18-1 [395 kB] Get:109 http://mirror.bm.debian.org/debian/ wheezy/main libcroco3 amd64 0.6.6-2 [134 kB] Get:110 http://mirror.bm.debian.org/debian/ wheezy/main libcupsimage2 amd64 1.5.3-5+deb7u6 [138 kB] Get:111 http://mirror.bm.debian.org/debian/ wheezy/main librtmp0 amd64 2.4+20111222.git4e06e21-1 [62.3 kB] Get:112 http://mirror.bm.debian.org/debian/ wheezy/main libssh2-1 amd64 1.4.2-1.1+deb7u2 [134 kB] Get:113 http://mirror.bm.debian.org/debian/ wheezy/main libcurl3 amd64 7.26.0-1+wheezy13 [331 kB] Get:114 http://mirror.bm.debian.org/debian/ wheezy/main tsconf all 1.0-11 [13.4 kB] Get:115 http://mirror.bm.debian.org/debian/ wheezy/main libts-0.0-0 amd64 1.0-11 [29.9 kB] Get:116 http://mirror.bm.debian.org/debian/ wheezy/main libdirectfb-1.2-9 amd64 1.2.10.0-5 [1203 kB] Get:117 http://mirror.bm.debian.org/debian/ wheezy/main libdjvulibre-text all 3.5.25.3-1 [78.1 kB] Get:118 http://mirror.bm.debian.org/debian/ wheezy/main libdjvulibre21 amd64 3.5.25.3-1 [726 kB] Get:119 http://mirror.bm.debian.org/debian/ wheezy/main libpciaccess0 amd64 0.13.1-2 [46.7 kB] Get:120 http://mirror.bm.debian.org/debian/ wheezy/main libdrm-intel1 amd64 2.4.40-1~deb7u2 [497 kB] Get:121 http://mirror.bm.debian.org/debian/ wheezy/main libdrm-nouveau1a amd64 2.4.40-1~deb7u2 [448 kB] Get:122 http://mirror.bm.debian.org/debian/ wheezy/main libdrm-radeon1 amd64 2.4.40-1~deb7u2 [457 kB] Get:123 http://mirror.bm.debian.org/debian/ wheezy/main libgomp1 amd64 4.7.2-5 [27.5 kB] Get:124 http://mirror.bm.debian.org/debian/ wheezy/main libfftw3-3 amd64 3.3.2-3.1 [1665 kB] Get:125 http://mirror.bm.debian.org/debian/ wheezy/main libogg0 amd64 1.3.0-4 [20.6 kB] Get:126 http://mirror.bm.debian.org/debian/ wheezy/main libflac8 amd64 1.2.1-6+deb7u1 [162 kB] Get:127 http://mirror.bm.debian.org/debian/ wheezy/main libfontenc1 amd64 1:1.1.1-1 [24.3 kB] Get:128 http://mirror.bm.debian.org/debian/ wheezy/main libxpm4 amd64 1:3.5.10-1 [49.4 kB] Get:129 http://mirror.bm.debian.org/debian/ wheezy/main libgd2-xpm amd64 2.0.36~rc1~dfsg-6.1+deb7u2 [234 kB] Get:130 http://mirror.bm.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:131 http://mirror.bm.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:132 http://mirror.bm.debian.org/debian/ wheezy/main libglu1-mesa amd64 8.0.5-4+deb7u2 [191 kB] Get:133 http://mirror.bm.debian.org/debian/ wheezy/main libxmu6 amd64 2:1.1.1-1 [66.6 kB] Get:134 http://mirror.bm.debian.org/debian/ wheezy/main libglew1.7 amd64 1.7.0-3 [141 kB] Get:135 http://mirror.bm.debian.org/debian/ wheezy/main libgmp10 amd64 2:5.0.5+dfsg-2 [250 kB] Get:136 http://mirror.bm.debian.org/debian/ wheezy/main libicu48 amd64 4.8.1.1-12+deb7u3 [4761 kB] Get:137 http://mirror.bm.debian.org/debian/ wheezy/main libitm1 amd64 4.7.2-5 [36.6 kB] Get:138 http://mirror.bm.debian.org/debian/ wheezy/main liblcms1 amd64 1.19.dfsg2-1.2+deb7u1 [113 kB] Get:139 http://mirror.bm.debian.org/debian/ wheezy/main liblcms2-2 amd64 2.2+git20110628-2.2+deb7u1 [144 kB] Get:140 http://mirror.bm.debian.org/debian/ wheezy/main liblqr-1-0 amd64 0.4.1-2 [29.9 kB] Get:141 http://mirror.bm.debian.org/debian/ wheezy/main libltdl7 amd64 2.4.2-1.1 [352 kB] Get:142 http://mirror.bm.debian.org/debian/ wheezy/main liblua5.1-0 amd64 5.1.5-4+deb7u1 [180 kB] Get:143 http://mirror.bm.debian.org/debian/ wheezy/main libmagickcore5 amd64 8:6.7.7.10-5+deb7u4 [2084 kB] Get:144 http://mirror.bm.debian.org/debian/ wheezy/main libilmbase6 amd64 1.0.1-4 [124 kB] Get:145 http://mirror.bm.debian.org/debian/ wheezy/main libmagickwand5 amd64 8:6.7.7.10-5+deb7u4 [462 kB] Get:146 http://mirror.bm.debian.org/debian/ wheezy/main libopenexr6 amd64 1.6.1-6 [249 kB] Get:147 http://mirror.bm.debian.org/debian/ wheezy/main librsvg2-2 amd64 2.36.1-2+deb7u1 [239 kB] Get:148 http://mirror.bm.debian.org/debian/ wheezy/main libwmf0.2-7 amd64 0.2.8.4-10.3+deb7u1 [193 kB] Get:149 http://mirror.bm.debian.org/debian/ wheezy/main libmagickcore5-extra amd64 8:6.7.7.10-5+deb7u4 [164 kB] Get:150 http://mirror.bm.debian.org/debian/ wheezy/main libmng1 amd64 1.0.10-3 [235 kB] Get:151 http://mirror.bm.debian.org/debian/ wheezy/main libmpfr4 amd64 3.1.0-5 [538 kB] Get:152 http://mirror.bm.debian.org/debian/ wheezy/main mysql-common all 5.5.47-0+deb7u1 [81.9 kB] Get:153 http://mirror.bm.debian.org/debian/ wheezy/main libmysqlclient18 amd64 5.5.47-0+deb7u1 [686 kB] Get:154 http://mirror.bm.debian.org/debian/ wheezy/main ncbi-data all 6.1.20120620-2 [5893 kB] Get:155 http://mirror.bm.debian.org/debian/ wheezy/main libncbi6 amd64 6.1.20120620-2 [4887 kB] Get:156 http://mirror.bm.debian.org/debian/ wheezy/main libnspr4 amd64 2:4.9.2-1+deb7u3 [140 kB] Get:157 http://mirror.bm.debian.org/debian/ wheezy/main libnss3 amd64 2:3.14.5-1+deb7u5 [1063 kB] Get:158 http://mirror.bm.debian.org/debian/ wheezy/main libobjc4 amd64 4.7.2-5 [158 kB] Get:159 http://mirror.bm.debian.org/debian/ wheezy/main libpaper1 amd64 1.1.24+nmu2 [22.0 kB] Get:160 http://mirror.bm.debian.org/debian/ wheezy/main libpcrecpp0 amd64 1:8.30-5 [125 kB] Get:161 http://mirror.bm.debian.org/debian/ wheezy/main libpcsclite1 amd64 1.8.4-1+deb7u1 [57.0 kB] Get:162 http://mirror.bm.debian.org/debian/ wheezy/main libjson0 amd64 0.10-1.2 [24.2 kB] Get:163 http://mirror.bm.debian.org/debian/ wheezy/main libvorbis0a amd64 1.3.2-1.3 [109 kB] Get:164 http://mirror.bm.debian.org/debian/ wheezy/main libvorbisenc2 amd64 1.3.2-1.3 [143 kB] Get:165 http://mirror.bm.debian.org/debian/ wheezy/main libsndfile1 amd64 1.0.25-5 [240 kB] Get:166 http://mirror.bm.debian.org/debian/ wheezy/main libxtst6 amd64 2:1.2.1-1+deb7u1 [26.8 kB] Get:167 http://mirror.bm.debian.org/debian/ wheezy/main libpulse0 amd64 2.0-6.1 [232 kB] Get:168 http://mirror.bm.debian.org/debian/ wheezy/main libqtcore4 amd64 4:4.8.2+dfsg-11 [2104 kB] Get:169 http://mirror.bm.debian.org/debian/ wheezy/main libqt4-xml amd64 4:4.8.2+dfsg-11 [131 kB] Get:170 http://mirror.bm.debian.org/debian/ wheezy/main libqtdbus4 amd64 4:4.8.2+dfsg-11 [219 kB] Get:171 http://mirror.bm.debian.org/debian/ wheezy/main libqt4-network amd64 4:4.8.2+dfsg-11 [569 kB] Get:172 http://mirror.bm.debian.org/debian/ wheezy/main libqtgui4 amd64 4:4.8.2+dfsg-11 [4046 kB] Get:173 http://mirror.bm.debian.org/debian/ wheezy/main libqt4-opengl amd64 4:4.8.2+dfsg-11 [337 kB] Get:174 http://mirror.bm.debian.org/debian/ wheezy/main libqt4-sql amd64 4:4.8.2+dfsg-11 [137 kB] Get:175 http://mirror.bm.debian.org/debian/ wheezy/main libqt4-sql-mysql amd64 4:4.8.2+dfsg-11 [70.4 kB] Get:176 http://mirror.bm.debian.org/debian/ wheezy/main libqt4-svg amd64 4:4.8.2+dfsg-11 [177 kB] Get:177 http://mirror.bm.debian.org/debian/ wheezy/main libqt4-test amd64 4:4.8.2+dfsg-11 [100 kB] Get:178 http://mirror.bm.debian.org/debian/ wheezy/main libsdl1.2debian amd64 1.2.15-5 [220 kB] Get:179 http://mirror.bm.debian.org/debian/ wheezy/main libvibrant6a amd64 6.1.20120620-2 [1548 kB] Get:180 http://mirror.bm.debian.org/debian/ wheezy/main libwxbase2.8-0 amd64 2.8.12.1-12 [678 kB] Get:181 http://mirror.bm.debian.org/debian/ wheezy/main libwxgtk2.8-0 amd64 2.8.12.1-12 [3411 kB] Get:182 http://mirror.bm.debian.org/debian/ wheezy/main libxaw7 amd64 2:1.0.10-2 [226 kB] Get:183 http://mirror.bm.debian.org/debian/ wheezy/main libxcb-shape0 amd64 1.8.1-2+deb7u1 [11.1 kB] Get:184 http://mirror.bm.debian.org/debian/ wheezy/main libxmuu1 amd64 2:1.1.1-1 [23.6 kB] Get:185 http://mirror.bm.debian.org/debian/ wheezy/main libxslt1.1 amd64 1.1.26-14.1 [254 kB] Get:186 http://mirror.bm.debian.org/debian/ wheezy/main libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:187 http://mirror.bm.debian.org/debian/ wheezy/main libxv1 amd64 2:1.0.7-1+deb7u1 [22.1 kB] Get:188 http://mirror.bm.debian.org/debian/ wheezy/main libxxf86dga1 amd64 2:1.1.3-2+deb7u1 [22.9 kB] Get:189 http://mirror.bm.debian.org/debian/ wheezy/main libyaml-0-2 amd64 0.1.4-2+deb7u5 [58.3 kB] Get:190 http://mirror.bm.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:191 http://mirror.bm.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:192 http://mirror.bm.debian.org/debian/ wheezy/main perl-modules all 5.14.2-21+deb7u3 [3444 kB] Get:193 http://mirror.bm.debian.org/debian/ wheezy/main perl amd64 5.14.2-21+deb7u3 [4429 kB] Get:194 http://mirror.bm.debian.org/debian/ wheezy/main libyaml-syck-perl amd64 1.20-1 [75.5 kB] Get:195 http://mirror.bm.debian.org/debian/ wheezy/main mafft amd64 6.864-1 [799 kB] Get:196 http://mirror.bm.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:197 http://mirror.bm.debian.org/debian/ wheezy/main libdbi-perl amd64 1.622-1+deb7u1 [892 kB] Get:198 http://mirror.bm.debian.org/debian/ wheezy/main libdbd-mysql-perl amd64 4.021-1+b1 [126 kB] Get:199 http://mirror.bm.debian.org/debian/ wheezy/main mysql-client-5.5 amd64 5.5.47-0+deb7u1 [1755 kB] Get:200 http://mirror.bm.debian.org/debian/ wheezy/main psmisc amd64 22.19-1+deb7u1 [135 kB] Get:201 http://mirror.bm.debian.org/debian/ wheezy/main mysql-server-core-5.5 amd64 5.5.47-0+deb7u1 [3406 kB] Get:202 http://mirror.bm.debian.org/debian/ wheezy/main mysql-server-5.5 amd64 5.5.47-0+deb7u1 [2106 kB] Get:203 http://mirror.bm.debian.org/debian/ wheezy/main openjdk-6-jre-lib all 6b38-1.13.10-1~deb7u1 [6259 kB] Get:204 http://mirror.bm.debian.org/debian/ wheezy/main openssl amd64 1.0.1e-2+deb7u20 [702 kB] Get:205 http://mirror.bm.debian.org/debian/ wheezy/main ca-certificates all 20130119+deb7u1 [210 kB] Get:206 http://mirror.bm.debian.org/debian/ wheezy/main java-common all 0.47 [66.1 kB] Get:207 http://mirror.bm.debian.org/debian/ wheezy/main default-jre-headless amd64 1:1.6-47 [8112 B] Get:208 http://mirror.bm.debian.org/debian/ wheezy/main ca-certificates-java all 20121112+nmu2 [14.9 kB] Get:209 http://mirror.bm.debian.org/debian/ wheezy/main tzdata-java all 2016d-0+deb7u1 [136 kB] Get:210 http://mirror.bm.debian.org/debian/ wheezy/main openjdk-6-jre-headless amd64 6b38-1.13.10-1~deb7u1 [32.9 MB] Get:211 http://mirror.bm.debian.org/debian/ wheezy/main poppler-data all 0.4.5-10 [1479 kB] Get:212 http://mirror.bm.debian.org/debian/ wheezy/main sgml-base all 1.26+nmu4 [14.6 kB] Get:213 http://mirror.bm.debian.org/debian/ wheezy/main ttf-dejavu-extra all 2.33-3 [1759 kB] Get:214 http://mirror.bm.debian.org/debian/ wheezy/main ttf-dejavu all 2.33-3 [30.6 kB] Get:215 http://mirror.bm.debian.org/debian/ wheezy/main velvet amd64 1.2.03~nozlibcopy-1 [691 kB] Get:216 http://mirror.bm.debian.org/debian/ wheezy/main wise amd64 2.4.1-10 [1075 kB] Get:217 http://mirror.bm.debian.org/debian/ wheezy/main libflite1 amd64 1.4-release-6 [13.1 MB] Get:218 http://mirror.bm.debian.org/debian/ wheezy/main libmpc2 amd64 0.9-4 [40.1 kB] Get:219 http://mirror.bm.debian.org/debian/ wheezy/main libsystemd-login0 amd64 44-11+deb7u4 [29.5 kB] Get:220 http://mirror.bm.debian.org/debian/ wheezy/main dmidecode amd64 2.11-9 [77.1 kB] Get:221 http://mirror.bm.debian.org/debian/ wheezy/main groff-base amd64 1.21-9 [1153 kB] Get:222 http://mirror.bm.debian.org/debian/ wheezy/main libboost-iostreams1.49.0 amd64 1.49.0-3.2 [59.9 kB] Get:223 http://mirror.bm.debian.org/debian/ wheezy/main manpages all 3.44-1 [795 kB] Get:224 http://mirror.bm.debian.org/debian/ wheezy/main netbase all 5.0 [20.1 kB] Get:225 http://mirror.bm.debian.org/debian/ wheezy/main procps amd64 1:3.3.3-3 [252 kB] Get:226 http://mirror.bm.debian.org/debian/ wheezy/main bzip2 amd64 1.0.6-4 [50.1 kB] Get:227 http://mirror.bm.debian.org/debian/ wheezy/main file amd64 5.11-2+deb7u8 [53.4 kB] Get:228 http://mirror.bm.debian.org/debian/ wheezy/main krb5-locales all 1.10.1+dfsg-5+deb7u7 [1504 kB] Get:229 http://mirror.bm.debian.org/debian/ wheezy/main mime-support all 3.52-1+deb7u1 [35.5 kB] Get:230 http://mirror.bm.debian.org/debian/ wheezy/main patch amd64 2.6.1-3 [121 kB] Get:231 http://mirror.bm.debian.org/debian/ wheezy/main python2.7-minimal amd64 2.7.3-6+deb7u2 [1785 kB] Get:232 http://mirror.bm.debian.org/debian/ wheezy/main python2.7 amd64 2.7.3-6+deb7u2 [2728 kB] Get:233 http://mirror.bm.debian.org/debian/ wheezy/main python-minimal all 2.7.3-4+deb7u1 [42.8 kB] Get:234 http://mirror.bm.debian.org/debian/ wheezy/main python all 2.7.3-4+deb7u1 [181 kB] Get:235 http://mirror.bm.debian.org/debian/ wheezy/main python-support all 1.0.15 [33.6 kB] Get:236 http://mirror.bm.debian.org/debian/ wheezy/main mummer amd64 3.23~dfsg-2 [469 kB] Get:237 http://mirror.bm.debian.org/debian/ wheezy/main abacas all 1.3.1-1 [26.7 kB] Get:238 http://mirror.bm.debian.org/debian/ wheezy/main gnustep-common amd64 2.6.2-2 [120 kB] Get:239 http://mirror.bm.debian.org/debian/ wheezy/main xml-core all 0.13+nmu2 [24.2 kB] Get:240 http://mirror.bm.debian.org/debian/ wheezy/main gnustep-base-common all 1.22.1-4+deb7u1 [205 kB] Get:241 http://mirror.bm.debian.org/debian/ wheezy/main libgnustep-base1.22 amd64 1.22.1-4+deb7u1 [1539 kB] Get:242 http://mirror.bm.debian.org/debian/ wheezy/main gnustep-base-runtime amd64 1.22.1-4+deb7u1 [231 kB] Get:243 http://mirror.bm.debian.org/debian/ wheezy/main mknfonts.tool amd64 0.5-11+b3 [15.6 kB] Get:244 http://mirror.bm.debian.org/debian/ wheezy/main gnustep-back-common all 0.20.1-2.1 [72.3 kB] Get:245 http://mirror.bm.debian.org/debian/ wheezy/main gnustep-gui-common all 0.20.0-3 [819 kB] Get:246 http://mirror.bm.debian.org/debian/ wheezy/main libao-common amd64 1.1.0-2 [11.3 kB] Get:247 http://mirror.bm.debian.org/debian/ wheezy/main libao4 amd64 1.1.0-2 [44.8 kB] Get:248 http://mirror.bm.debian.org/debian/ wheezy/main libaspell15 amd64 0.60.7~20110707-1 [707 kB] Get:249 http://mirror.bm.debian.org/debian/ wheezy/main libgif4 amd64 4.1.6-10+deb7u1 [42.6 kB] Get:250 http://mirror.bm.debian.org/debian/ wheezy/main libgnustep-gui0.20 amd64 0.20.0-3+b1 [1784 kB] Get:251 http://mirror.bm.debian.org/debian/ wheezy/main gnustep-gui-runtime amd64 0.20.0-3+b1 [225 kB] Get:252 http://mirror.bm.debian.org/debian/ wheezy/main gnustep-back0.20-art amd64 0.20.1-2.1 [325 kB] Get:253 http://mirror.bm.debian.org/debian/ wheezy/main gnustep-back0.20 all 0.20.1-2.1 [65.1 kB] Get:254 http://mirror.bm.debian.org/debian/ wheezy/main gnustep-gpbs amd64 0.20.1-2.1 [92.3 kB] Get:255 http://mirror.bm.debian.org/debian/ wheezy/main libgsl0ldbl amd64 1.15+dfsg.2-2 [1132 kB] Get:256 http://mirror.bm.debian.org/debian/ wheezy/main adun.app amd64 0.81-5+b2 [1650 kB] Get:257 http://mirror.bm.debian.org/debian/ wheezy/main openjdk-6-jre amd64 6b38-1.13.10-1~deb7u1 [239 kB] Get:258 http://mirror.bm.debian.org/debian/ wheezy/main libbytecode-java all 0.92.svn.20090106-1 [89.8 kB] Get:259 http://mirror.bm.debian.org/debian/ wheezy/main libcommons-pool-java all 1.5.6-1 [94.9 kB] Get:260 http://mirror.bm.debian.org/debian/ wheezy/main libcommons-collections-java all 2.1.1-10 [168 kB] Get:261 http://mirror.bm.debian.org/debian/ wheezy/main libcommons-dbcp-java all 1.4-3 [153 kB] Get:262 http://mirror.bm.debian.org/debian/ wheezy/main libservlet2.5-java all 6.0.45+dfsg-1~deb7u1 [241 kB] Get:263 http://mirror.bm.debian.org/debian/ wheezy/main libhsqldb-java all 1.8.0.10+dfsg-0+deb7u1 [932 kB] Get:264 http://mirror.bm.debian.org/debian/ wheezy/main libbiojava1.7-java all 1:1.7.1-2 [3198 kB] Get:265 http://mirror.bm.debian.org/debian/ wheezy/main libbiojava-java all 1:1.7.1-2 [50.3 kB] Get:266 http://mirror.bm.debian.org/debian/ wheezy/main libapache-pom-java all 10-2 [3870 B] Get:267 http://mirror.bm.debian.org/debian/ wheezy/main libcommons-parent-java all 22-2 [6786 B] Get:268 http://mirror.bm.debian.org/debian/ wheezy/main libcommons-lang-java all 2.6-3 [270 kB] Get:269 http://mirror.bm.debian.org/debian/ wheezy/main libcommons-cli-java all 1.2-3 [39.2 kB] Get:270 http://mirror.bm.debian.org/debian/ wheezy/main alien-hunter all 1.7-1 [30.5 kB] Get:271 http://mirror.bm.debian.org/debian/ wheezy/main libblas3 amd64 1.2.20110419-5 [293 kB] Get:272 http://mirror.bm.debian.org/debian/ wheezy/main libtamuanova-0.2 amd64 0.2-2 [7834 B] Get:273 http://mirror.bm.debian.org/debian/ wheezy/main libmath-tamuanova-perl amd64 1.0.2-1 [15.7 kB] Get:274 http://mirror.bm.debian.org/debian/ wheezy/main libterm-readkey-perl amd64 2.30-4+b2 [32.2 kB] Get:275 http://mirror.bm.debian.org/debian/ wheezy/main libibverbs1 amd64 1.1.6-1 [35.3 kB] Get:276 http://mirror.bm.debian.org/debian/ wheezy/main libnuma1 amd64 2.0.8~rc4-1 [33.7 kB] Get:277 http://mirror.bm.debian.org/debian/ wheezy/main libtorque2 amd64 2.4.16+dfsg-1+deb7u4 [121 kB] Get:278 http://mirror.bm.debian.org/debian/ wheezy/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB] Get:279 http://mirror.bm.debian.org/debian/ wheezy/main fftw2 amd64 2.1.5-1 [283 kB] Get:280 http://mirror.bm.debian.org/debian/ wheezy/main libhdf4-0-alt amd64 4.2r4-13 [307 kB] Get:281 http://mirror.bm.debian.org/debian/ wheezy/main libqhull5 amd64 2009.1-3 [163 kB] Get:282 http://mirror.bm.debian.org/debian/ wheezy/main libcsiro0 amd64 5.9.9-5 [58.7 kB] Get:283 http://mirror.bm.debian.org/debian/ wheezy/main libqsastime0 amd64 5.9.9-5 [40.7 kB] Get:284 http://mirror.bm.debian.org/debian/ wheezy/main libplplot11 amd64 5.9.9-5 [505 kB] Get:285 http://mirror.bm.debian.org/debian/ wheezy/main proj-data amd64 4.7.0-2 [2937 kB] Get:286 http://mirror.bm.debian.org/debian/ wheezy/main libproj0 amd64 4.7.0-2 [138 kB] Get:287 http://mirror.bm.debian.org/debian/ wheezy/main libopengl-perl amd64 0.66+dfsg-1 [490 kB] Get:288 http://mirror.bm.debian.org/debian/ wheezy/main pdl amd64 1:2.4.11-4 [5357 kB] Get:289 http://mirror.bm.debian.org/debian/ wheezy/main libpdl-stats-perl amd64 0.6.2-1 [437 kB] Get:290 http://mirror.bm.debian.org/debian/ wheezy/main altree amd64 1.2.1-1 [327 kB] Get:291 http://mirror.bm.debian.org/debian/ wheezy/main amap-align amd64 2.2-3 [144 kB] Get:292 http://mirror.bm.debian.org/debian/ wheezy/main libxml-commons-resolver1.1-java all 1.2-7 [91.9 kB] Get:293 http://mirror.bm.debian.org/debian/ wheezy/main libxml-commons-external-java all 1.4.01-2 [245 kB] Get:294 http://mirror.bm.debian.org/debian/ wheezy/main libxerces2-java all 2.11.0-6 [1365 kB] Get:295 http://mirror.bm.debian.org/debian/ wheezy/main ant all 1.8.2-4 [1841 kB] Get:296 http://mirror.bm.debian.org/debian/ wheezy/main ant-optional all 1.8.2-4 [335 kB] Get:297 http://mirror.bm.debian.org/debian/ wheezy/main libapr1 amd64 1.4.6-3+deb7u1 [106 kB] Get:298 http://mirror.bm.debian.org/debian/ wheezy/main libaprutil1 amd64 1.4.1-3 [89.8 kB] Get:299 http://mirror.bm.debian.org/debian/ wheezy/main libaprutil1-dbd-sqlite3 amd64 1.4.1-3 [19.0 kB] Get:300 http://mirror.bm.debian.org/debian/ wheezy/main libaprutil1-ldap amd64 1.4.1-3 [16.6 kB] Get:301 http://mirror.bm.debian.org/debian/ wheezy/main apache2.2-bin amd64 2.2.22-13+deb7u6 [793 kB] Get:302 http://mirror.bm.debian.org/debian/ wheezy/main apache2-utils amd64 2.2.22-13+deb7u6 [164 kB] Get:303 http://mirror.bm.debian.org/debian/ wheezy/main apache2.2-common amd64 2.2.22-13+deb7u6 [294 kB] Get:304 http://mirror.bm.debian.org/debian/ wheezy/main apache2-mpm-worker amd64 2.2.22-13+deb7u6 [2236 B] Get:305 http://mirror.bm.debian.org/debian/ wheezy/main apache2 amd64 2.2.22-13+deb7u6 [1438 B] Get:306 http://mirror.bm.debian.org/debian/ wheezy/main libmaloc1 amd64 0.2-2.3 [61.2 kB] Get:307 http://mirror.bm.debian.org/debian/ wheezy/main apbs amd64 1.3.0-2 [340 kB] Get:308 http://mirror.bm.debian.org/debian/ wheezy/main dictionaries-common all 1.12.11 [302 kB] Get:309 http://mirror.bm.debian.org/debian/ wheezy/main aspell amd64 0.60.7~20110707-1 [362 kB] Get:310 http://mirror.bm.debian.org/debian/ wheezy/main aspell-en all 7.1-0-1 [268 kB] Get:311 http://mirror.bm.debian.org/debian/ wheezy/main autodock amd64 4.2.3-2 [186 kB] Get:312 http://mirror.bm.debian.org/debian/ wheezy/main autogrid amd64 4.2.3-2 [39.0 kB] Get:313 http://mirror.bm.debian.org/debian/ wheezy/main autotools-dev all 20120608.1 [73.0 kB] Get:314 http://mirror.bm.debian.org/debian/ wheezy/main libboost-date-time1.49.0 amd64 1.49.0-3.2 [48.0 kB] Get:315 http://mirror.bm.debian.org/debian/ wheezy/main libboost-regex1.49.0 amd64 1.49.0-3.2 [459 kB] Get:316 http://mirror.bm.debian.org/debian/ wheezy/main libboost-system1.49.0 amd64 1.49.0-3.2 [33.4 kB] Get:317 http://mirror.bm.debian.org/debian/ wheezy/main libboost-thread1.49.0 amd64 1.49.0-3.2 [64.0 kB] Get:318 http://mirror.bm.debian.org/debian/ wheezy/main libpython2.7 amd64 2.7.3-6+deb7u2 [1207 kB] Get:319 http://mirror.bm.debian.org/debian/ wheezy/main libball1.4-data all 1.4.1+20111206-4 [15.1 MB] Get:320 http://mirror.bm.debian.org/debian/ wheezy/main libball1.4 amd64 1.4.1+20111206-4 [5688 kB] Get:321 http://mirror.bm.debian.org/debian/ wheezy/main libballview1.4 amd64 1.4.1+20111206-4 [2590 kB] Get:322 http://mirror.bm.debian.org/debian/ wheezy/main python-sip amd64 4.13.3-2 [158 kB] Get:323 http://mirror.bm.debian.org/debian/ wheezy/main python-ball amd64 1.4.1+20111206-4 [1193 kB] Get:324 http://mirror.bm.debian.org/debian/ wheezy/main python-ballview amd64 1.4.1+20111206-4 [498 kB] Get:325 http://mirror.bm.debian.org/debian/ wheezy/main ballview amd64 1.4.1+20111206-4 [2572 kB] Get:326 http://mirror.bm.debian.org/debian/ wheezy/main binfmt-support amd64 2.0.12 [85.0 kB] Get:327 http://mirror.bm.debian.org/debian/ wheezy/main binutils amd64 2.22-8+deb7u2 [4793 kB] Get:328 http://mirror.bm.debian.org/debian/ wheezy/main ant-contrib all 1.0~b3+svn177-5 [266 kB] Get:329 http://mirror.bm.debian.org/debian/ wheezy/main libhamcrest-java all 1.2-2 [341 kB] Get:330 http://mirror.bm.debian.org/debian/ wheezy/main junit4 all 4.10-3 [217 kB] Get:331 http://mirror.bm.debian.org/debian/ wheezy/main libcommons-codec-java all 1.6-1 [194 kB] Get:332 http://mirror.bm.debian.org/debian/ wheezy/main libcommons-logging-java all 1.1.1-9 [113 kB] Get:333 http://mirror.bm.debian.org/debian/ wheezy/main libcommons-httpclient-java all 3.1-10.2+deb7u2 [300 kB] Get:334 http://mirror.bm.debian.org/debian/ wheezy/main libcommons-net2-java all 2.2-2 [193 kB] Get:335 http://mirror.bm.debian.org/debian/ wheezy/main libgnujaf-java all 1.1.1-8 [35.5 kB] Get:336 http://mirror.bm.debian.org/debian/ wheezy/main libgnuinet-java all 1.1.2-2 [397 kB] Get:337 http://mirror.bm.debian.org/debian/ wheezy/main libgnumail-java all 1.1.2-7 [287 kB] Get:338 http://mirror.bm.debian.org/debian/ wheezy/main libjcommon-java all 1.0.16-2 [459 kB] Get:339 http://mirror.bm.debian.org/debian/ wheezy/main libwsdl4j-java all 1.6.2-4 [141 kB] Get:340 http://mirror.bm.debian.org/debian/ wheezy/main libcommons-discovery-java all 0.5-3 [136 kB] Get:341 http://mirror.bm.debian.org/debian/ wheezy/main libaxis-java all 1.4-16.2+deb7u1 [1496 kB] Get:342 http://mirror.bm.debian.org/debian/ wheezy/main libjava-xmlbuilder-java all 0.4-2 [20.2 kB] Get:343 http://mirror.bm.debian.org/debian/ wheezy/main libjets3t-java all 0.8.1+dfsg-1 [479 kB] Get:344 http://mirror.bm.debian.org/debian/ wheezy/main libjgoodies-forms-java all 1.3.0-2 [116 kB] Get:345 http://mirror.bm.debian.org/debian/ wheezy/main libjsch-java all 0.1.42-2 [216 kB] Get:346 http://mirror.bm.debian.org/debian/ wheezy/main liblog4j1.2-java all 1.2.16-3 [385 kB] Get:347 http://mirror.bm.debian.org/debian/ wheezy/main libmysql-java all 5.1.16-2 [878 kB] Get:348 http://mirror.bm.debian.org/debian/ wheezy/main liboro-java all 2.0.8a-8 [70.0 kB] Get:349 http://mirror.bm.debian.org/debian/ wheezy/main libregexp-java all 1.5-3 [35.5 kB] Get:350 http://mirror.bm.debian.org/debian/ wheezy/main libjaxen-java all 1.1.3-1 [203 kB] Get:351 http://mirror.bm.debian.org/debian/ wheezy/main libjdom1-java all 1.1.2+dfsg-2 [151 kB] Get:352 http://mirror.bm.debian.org/debian/ wheezy/main libjaxme-java all 0.5.2+dfsg-6 [1202 kB] Get:353 http://mirror.bm.debian.org/debian/ wheezy/main libxpp2-java all 2.1.10-7 [147 kB] Get:354 http://mirror.bm.debian.org/debian/ wheezy/main libxpp3-java all 1.1.4c-2 [349 kB] Get:355 http://mirror.bm.debian.org/debian/ wheezy/main libbackport-util-concurrent-java all 3.1-3 [294 kB] Get:356 http://mirror.bm.debian.org/debian/ wheezy/main libdom4j-java all 1.6.1+dfsg.2-6 [334 kB] Get:357 http://mirror.bm.debian.org/debian/ wheezy/main libxom-java all 1.2.1-3 [389 kB] Get:358 http://mirror.bm.debian.org/debian/ wheezy/main libsaxonb-java all 9.1.0.8-1 [3986 kB] Get:359 http://mirror.bm.debian.org/debian/ wheezy/main mysql-server all 5.5.47-0+deb7u1 [80.1 kB] Get:360 http://mirror.bm.debian.org/debian/ wheezy/main biomaj all 1.2.1-1 [3767 kB] Get:361 http://mirror.bm.debian.org/debian/ wheezy/main libio-string-perl all 1.08-2 [12.0 kB] Get:362 http://mirror.bm.debian.org/debian/ wheezy/main libdata-stag-perl all 0.11-2 [509 kB] Get:363 http://mirror.bm.debian.org/debian/ wheezy/main libbio-perl-perl all 1.6.901-3 [6143 kB] Get:364 http://mirror.bm.debian.org/debian/ wheezy/main bioperl all 1.6.901-3 [467 kB] Get:365 http://mirror.bm.debian.org/debian/ wheezy/main libbio-perl-run-perl all 1.6.9-1 [883 kB] Get:366 http://mirror.bm.debian.org/debian/ wheezy/main bioperl-run all 1.6.9-1 [46.3 kB] Get:367 http://mirror.bm.debian.org/debian/ wheezy/main blast2 amd64 1:2.2.26.20120620-2 [682 kB] Get:368 http://mirror.bm.debian.org/debian/ wheezy/main libcr0 amd64 0.8.5-2 [36.9 kB] Get:369 http://mirror.bm.debian.org/debian/ wheezy/main blcr-util amd64 0.8.5-2 [43.7 kB] Get:370 http://mirror.bm.debian.org/debian/ wheezy/main menu amd64 2.1.46 [480 kB] Get:371 http://mirror.bm.debian.org/debian/ wheezy/main blends-common all 0.6.16.2 [23.4 kB] Get:372 http://mirror.bm.debian.org/debian/ wheezy/main tcl8.5 amd64 8.5.11-2 [1627 kB] Get:373 http://mirror.bm.debian.org/debian/ wheezy/main tk8.5 amd64 8.5.11-2 [1189 kB] Get:374 http://mirror.bm.debian.org/debian/ wheezy/main blt amd64 2.4z-4.2 [1694 kB] Get:375 http://mirror.bm.debian.org/debian/ wheezy/main boxshade amd64 3.3.1-7+wheezy1 [53.7 kB] Get:376 http://mirror.bm.debian.org/debian/ wheezy/main libc-dev-bin amd64 2.13-38+deb7u10 [228 kB] Get:377 http://mirror.bm.debian.org/debian/ wheezy/main linux-libc-dev amd64 3.2.78-1 [854 kB] Get:378 http://mirror.bm.debian.org/debian/ wheezy/main libc6-dev amd64 2.13-38+deb7u10 [2663 kB] Get:379 http://mirror.bm.debian.org/debian/ wheezy/main cpp-4.7 amd64 4.7.2-5 [5416 kB] Get:380 http://mirror.bm.debian.org/debian/ wheezy/main cpp amd64 4:4.7.2-1 [16.6 kB] Get:381 http://mirror.bm.debian.org/debian/ wheezy/main gcc-4.7 amd64 4.7.2-5 [8296 kB] Get:382 http://mirror.bm.debian.org/debian/ wheezy/main gcc amd64 4:4.7.2-1 [5064 B] Get:383 http://mirror.bm.debian.org/debian/ wheezy/main libstdc++6-4.7-dev amd64 4.7.2-5 [1726 kB] Get:384 http://mirror.bm.debian.org/debian/ wheezy/main g++-4.7 amd64 4.7.2-5 [8011 kB] Get:385 http://mirror.bm.debian.org/debian/ wheezy/main g++ amd64 4:4.7.2-1 [1374 B] Get:386 http://mirror.bm.debian.org/debian/ wheezy/main make amd64 3.81-8.2 [396 kB] Get:387 http://mirror.bm.debian.org/debian/ wheezy/main libtimedate-perl all 1.2000-1 [41.2 kB] Get:388 http://mirror.bm.debian.org/debian/ wheezy/main libdpkg-perl all 1.16.18 [966 kB] Get:389 http://mirror.bm.debian.org/debian/ wheezy/main dpkg-dev all 1.16.18 [1366 kB] Get:390 http://mirror.bm.debian.org/debian/ wheezy/main build-essential amd64 11.5 [7178 B] Get:391 http://mirror.bm.debian.org/debian/ wheezy/main bwa amd64 0.6.2-1 [156 kB] Get:392 http://mirror.bm.debian.org/debian/ wheezy/main openmpi-common all 1.4.5-1 [101 kB] Get:393 http://mirror.bm.debian.org/debian/ wheezy/main openmpi-bin amd64 1.4.5-1 [166 kB] Get:394 http://mirror.bm.debian.org/debian/ wheezy/main mpi-default-bin amd64 1.0.1 [2990 B] Get:395 http://mirror.bm.debian.org/debian/ wheezy/main cd-hit amd64 4.6-2012-04-25-1 [704 kB] Get:396 http://mirror.bm.debian.org/debian/ wheezy/main cdbs all 0.4.115+deb7u1 [78.1 kB] Get:397 http://mirror.bm.debian.org/debian/ wheezy/main clonalframe amd64 1.2-3 [55.0 kB] Get:398 http://mirror.bm.debian.org/debian/ wheezy/main libargtable2-0 amd64 12-1 [19.2 kB] Get:399 http://mirror.bm.debian.org/debian/ wheezy/main clustalo amd64 1.1.0-1 [285 kB] Get:400 http://mirror.bm.debian.org/debian/ wheezy/main clustalw amd64 2.1+lgpl-2 [346 kB] Get:401 http://mirror.bm.debian.org/debian/ wheezy/main clustalx amd64 2.1+lgpl-2 [569 kB] Get:402 http://mirror.bm.debian.org/debian/ wheezy/main curl amd64 7.26.0-1+wheezy13 [270 kB] Get:403 http://mirror.bm.debian.org/debian/ wheezy/main dbus amd64 1.6.8-1+deb7u6 [404 kB] Get:404 http://mirror.bm.debian.org/debian/ wheezy/main dialign amd64 2.2.1-5 [205 kB] Get:405 http://mirror.bm.debian.org/debian/ wheezy/main dialign-tx-data all 1.0.2-2 [1701 kB] Get:406 http://mirror.bm.debian.org/debian/ wheezy/main dialign-tx amd64 1.0.2-2 [59.0 kB] Get:407 http://mirror.bm.debian.org/debian/ wheezy/main libboost-program-options1.49.0 amd64 1.49.0-3.2 [162 kB] Get:408 http://mirror.bm.debian.org/debian/ wheezy/main dssp amd64 2.0.4-2 [198 kB] Get:409 http://mirror.bm.debian.org/debian/ wheezy/main libhpdf-2.2.1 amd64 2.2.1-1 [504 kB] Get:410 http://mirror.bm.debian.org/debian/ wheezy/main libpq5 amd64 9.1.21-0+deb7u1 [140 kB] Get:411 http://mirror.bm.debian.org/debian/ wheezy/main emboss-lib amd64 6.4.0-2 [2823 kB] Get:412 http://mirror.bm.debian.org/debian/ wheezy/main embassy-domainatrix amd64 0.1.0+20110714-1 [98.7 kB] Get:413 http://mirror.bm.debian.org/debian/ wheezy/main embassy-domalign amd64 0.1.0+20110714-1 [114 kB] Get:414 http://mirror.bm.debian.org/debian/ wheezy/main embassy-domsearch amd64 1:0.1.0+20110714-1 [130 kB] Get:415 http://mirror.bm.debian.org/debian/ wheezy/main emboss-data all 6.4.0-2 [39.0 MB] Get:416 http://mirror.bm.debian.org/debian/ wheezy/main emboss amd64 6.4.0-2 [1009 kB] Get:417 http://mirror.bm.debian.org/debian/ wheezy/main exonerate amd64 2.2.0-6 [3053 kB] Get:418 http://mirror.bm.debian.org/debian/ wheezy/main fakeroot amd64 1.18.4-2 [109 kB] Get:419 http://mirror.bm.debian.org/debian/ wheezy/main fastdnaml amd64 1.2.2-10 [64.3 kB] Get:420 http://mirror.bm.debian.org/debian/ wheezy/main fastjar amd64 2:0.98-3 [90.2 kB] Get:421 http://mirror.bm.debian.org/debian/ wheezy/main fastlink amd64 4.1P-fix95-3 [415 kB] Get:422 http://mirror.bm.debian.org/debian/ wheezy/main libgtextutils0 amd64 0.6.2-1 [21.1 kB] Get:423 http://mirror.bm.debian.org/debian/ wheezy/main libgd-gd2-perl amd64 1:2.46-3+b1 [200 kB] Get:424 http://mirror.bm.debian.org/debian/ wheezy/main libgd-text-perl all 0.86-8 [42.4 kB] Get:425 http://mirror.bm.debian.org/debian/ wheezy/main libgd-graph-perl all 1.44-6 [393 kB] Get:426 http://mirror.bm.debian.org/debian/ wheezy/main libperlio-gzip-perl amd64 0.18-1+b2 [19.0 kB] Get:427 http://mirror.bm.debian.org/debian/ wheezy/main fastx-toolkit amd64 0.0.13.2-1 [131 kB] Get:428 http://mirror.bm.debian.org/debian/ wheezy/main jarwrapper all 0.43 [16.0 kB] Get:429 http://mirror.bm.debian.org/debian/ wheezy/main junit all 3.8.2-8 [107 kB] Get:430 http://mirror.bm.debian.org/debian/ wheezy/main libnb-org-openide-util-lookup-java all 7.0.1+dfsg1-5 [94.9 kB] Get:431 http://mirror.bm.debian.org/debian/ wheezy/main libnb-org-openide-util-java all 7.0.1+dfsg1-5 [210 kB] Get:432 http://mirror.bm.debian.org/debian/ wheezy/main libfreehep-util-java all 2.0.2-5 [47.7 kB] Get:433 http://mirror.bm.debian.org/debian/ wheezy/main libfreehep-swing-java all 2.0.3-3 [190 kB] Get:434 http://mirror.bm.debian.org/debian/ wheezy/main libfreehep-export-java all 2.1.1-2 [21.1 kB] Get:435 http://mirror.bm.debian.org/debian/ wheezy/main libfreehep-graphics2d-java all 2.1.1-3 [122 kB] Get:436 http://mirror.bm.debian.org/debian/ wheezy/main libfreehep-io-java all 2.0.2-4 [60.6 kB] Get:437 http://mirror.bm.debian.org/debian/ wheezy/main libfreehep-graphicsio-java all 2.1.1-3 [344 kB] Get:438 http://mirror.bm.debian.org/debian/ wheezy/main javahelp2 all 2.0.05.ds1-6 [2115 kB] Get:439 http://mirror.bm.debian.org/debian/ wheezy/main libtablelayout-java all 20090826-2 [50.3 kB] Get:440 http://mirror.bm.debian.org/debian/ wheezy/main libjas-plotter-java all 2.2.6+dfsg1-2 [602 kB] Get:441 http://mirror.bm.debian.org/debian/ wheezy/main libfreehep-graphicsio-tests-java all 2.1.1+dfsg1-3 [104 kB] Get:442 http://mirror.bm.debian.org/debian/ wheezy/main libfreehep-graphicsio-emf-java all 2.1.1-emfplus+dfsg1-2 [370 kB] Get:443 http://mirror.bm.debian.org/debian/ wheezy/main libfreehep-graphicsio-pdf-java all 2.1.1+dfsg-1 [71.6 kB] Get:444 http://mirror.bm.debian.org/debian/ wheezy/main libfreehep-graphicsio-ps-java all 2.1.1-1 [46.6 kB] Get:445 http://mirror.bm.debian.org/debian/ wheezy/main libfreehep-xml-java all 2.1.2+dfsg1-3 [133 kB] Get:446 http://mirror.bm.debian.org/debian/ wheezy/main libfreehep-graphicsio-svg-java all 2.1.1-3 [24.8 kB] Get:447 http://mirror.bm.debian.org/debian/ wheezy/main libfreehep-graphicsio-swf-java all 2.1.1+dfsg-1 [160 kB] Get:448 http://mirror.bm.debian.org/debian/ wheezy/main libbcmail-java all 1.44+dfsg-3.1+deb7u1 [239 kB] Get:449 http://mirror.bm.debian.org/debian/ wheezy/main libgcj-common all 1:4.6.3-8 [139 kB] Get:450 http://mirror.bm.debian.org/debian/ wheezy/main libbcprov-java all 1.44+dfsg-3.1+deb7u1 [1385 kB] Get:451 http://mirror.bm.debian.org/debian/ wheezy/main libbctsp-java all 1.44+dfsg-3.1+deb7u1 [70.6 kB] Get:452 http://mirror.bm.debian.org/debian/ wheezy/main libitext5-java all 5.0.6+svn4804-1 [3431 kB] Get:453 http://mirror.bm.debian.org/debian/ wheezy/main libjam-java all 0.0.r297-1 [165 kB] Get:454 http://mirror.bm.debian.org/debian/ wheezy/main libjebl2-java all 0.0.r6-1 [496 kB] Get:455 http://mirror.bm.debian.org/debian/ wheezy/main figtree all 1.3.1-1 [874 kB] Get:456 http://mirror.bm.debian.org/debian/ wheezy/main filo amd64 1.1+2011020401.2 [43.0 kB] Get:457 http://mirror.bm.debian.org/debian/ wheezy/main fonts-droid all 20111207+git-1 [4312 kB] Get:458 http://mirror.bm.debian.org/debian/ wheezy/main fonts-liberation all 1.07.2-6 [1323 kB] Get:459 http://mirror.bm.debian.org/debian/ wheezy/main fonts-lyx all 2.0.3-3 [167 kB] Get:460 http://mirror.bm.debian.org/debian/ wheezy/main libgtkglext1 amd64 1.2.0-2 [137 kB] Get:461 http://mirror.bm.debian.org/debian/ wheezy/main gamgi amd64 0.15.8-1 [845 kB] Get:462 http://mirror.bm.debian.org/debian/ wheezy/main garlic amd64 1.6-1.1 [273 kB] Get:463 http://mirror.bm.debian.org/debian/ wheezy/main libbio-graphics-perl all 2.26-1 [669 kB] Get:464 http://mirror.bm.debian.org/debian/ wheezy/main libcgi-session-perl all 4.46-1 [123 kB] Get:465 http://mirror.bm.debian.org/debian/ wheezy/main libjson-perl all 2.53-1 [99.9 kB] Get:466 http://mirror.bm.debian.org/debian/ wheezy/main libstatistics-descriptive-perl all 3.0603-1 [42.5 kB] Get:467 http://mirror.bm.debian.org/debian/ wheezy/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:468 http://mirror.bm.debian.org/debian/ wheezy/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:469 http://mirror.bm.debian.org/debian/ wheezy/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:470 http://mirror.bm.debian.org/debian/ wheezy/main liburi-perl all 1.60-1 [100 kB] Get:471 http://mirror.bm.debian.org/debian/ wheezy/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:472 http://mirror.bm.debian.org/debian/ wheezy/main libhtml-parser-perl amd64 3.69-2 [114 kB] Get:473 http://mirror.bm.debian.org/debian/ wheezy/main libhtml-tree-perl all 5.02-1 [225 kB] Get:474 http://mirror.bm.debian.org/debian/ wheezy/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:475 http://mirror.bm.debian.org/debian/ wheezy/main libhttp-message-perl all 6.03-1 [78.5 kB] Get:476 http://mirror.bm.debian.org/debian/ wheezy/main libhttp-cookies-perl all 6.00-2 [23.5 kB] Get:477 http://mirror.bm.debian.org/debian/ wheezy/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:478 http://mirror.bm.debian.org/debian/ wheezy/main libnet-ssleay-perl amd64 1.48-1+b1 [335 kB] Get:479 http://mirror.bm.debian.org/debian/ wheezy/main libio-socket-ssl-perl all 1.76-2 [68.0 kB] Get:480 http://mirror.bm.debian.org/debian/ wheezy/main libnet-http-perl all 6.03-2 [24.3 kB] Get:481 http://mirror.bm.debian.org/debian/ wheezy/main liblwp-protocol-https-perl all 6.03-1 [7580 B] Get:482 http://mirror.bm.debian.org/debian/ wheezy/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:483 http://mirror.bm.debian.org/debian/ wheezy/main libwww-perl all 6.04-1 [203 kB] Get:484 http://mirror.bm.debian.org/debian/ wheezy/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:485 http://mirror.bm.debian.org/debian/ wheezy/main sqlite3 amd64 3.7.13-1+deb7u2 [119 kB] Get:486 http://mirror.bm.debian.org/debian/ wheezy/main libdbd-sqlite3-perl amd64 1.37-1 [113 kB] Get:487 http://mirror.bm.debian.org/debian/ wheezy/main libjs-prototype all 1.7.0-2 [40.9 kB] Get:488 http://mirror.bm.debian.org/debian/ wheezy/main libjs-scriptaculous all 1.9.0-2 [129 kB] Get:489 http://mirror.bm.debian.org/debian/ wheezy/main gbrowse all 2.48~dfsg-1 [2634 kB] Get:490 http://mirror.bm.debian.org/debian/ wheezy/main gdpc amd64 2.2.5-2 [38.1 kB] Get:491 http://mirror.bm.debian.org/debian/ wheezy/main libsqlite0 amd64 2.8.17-7 [192 kB] Get:492 http://mirror.bm.debian.org/debian/ wheezy/main libtinyxml2.6.2 amd64 2.6.2-1 [43.8 kB] Get:493 http://mirror.bm.debian.org/debian/ wheezy/main gentle amd64 1.9+cvs20100605+dfsg1-1 [2662 kB] Get:494 http://mirror.bm.debian.org/debian/ wheezy/main gff2aplot amd64 2.0-7 [328 kB] Get:495 http://mirror.bm.debian.org/debian/ wheezy/main gff2ps all 0.98d-4 [51.3 kB] Get:496 http://mirror.bm.debian.org/debian/ wheezy/main gfortran-4.7 amd64 4.7.2-5 [6173 kB] Get:497 http://mirror.bm.debian.org/debian/ wheezy/main gfortran amd64 4:4.7.2-1 [1130 B] Get:498 http://mirror.bm.debian.org/debian/ wheezy/main liblapack3 amd64 3.4.1+dfsg-1+deb70u1 [5036 kB] Get:499 http://mirror.bm.debian.org/debian/ wheezy/main libmopac7-1gf amd64 1.15-5 [587 kB] Get:500 http://mirror.bm.debian.org/debian/ wheezy/main libsc-data all 2.3.1-14 [313 kB] Get:501 http://mirror.bm.debian.org/debian/ wheezy/main libint1 amd64 1.1.4-1 [971 kB] Get:502 http://mirror.bm.debian.org/debian/ wheezy/main libsc7 amd64 2.3.1-14 [3243 kB] Get:503 http://mirror.bm.debian.org/debian/ wheezy/main libghemical-data all 3.0.0-2 [167 kB] Get:504 http://mirror.bm.debian.org/debian/ wheezy/main libghemical5 amd64 3.0.0-2 [515 kB] Get:505 http://mirror.bm.debian.org/debian/ wheezy/main libglade2-0 amd64 1:2.6.4-1 [89.0 kB] Get:506 http://mirror.bm.debian.org/debian/ wheezy/main liboglappth2 amd64 1.0.0-2 [34.0 kB] Get:507 http://mirror.bm.debian.org/debian/ wheezy/main libopenbabel4 amd64 2.3.1+dfsg-4 [4050 kB] Get:508 http://mirror.bm.debian.org/debian/ wheezy/main mpqc amd64 2.3.1-14 [124 kB] Get:509 http://mirror.bm.debian.org/debian/ wheezy/main ghemical amd64 3.0.0-1 [1934 kB] Get:510 http://mirror.bm.debian.org/debian/ wheezy/main libijs-0.35 amd64 0.35-8 [20.4 kB] Get:511 http://mirror.bm.debian.org/debian/ wheezy/main libjbig2dec0 amd64 0.11+20120125-1 [51.8 kB] Get:512 http://mirror.bm.debian.org/debian/ wheezy/main libgs9-common all 9.05~dfsg-6.3+deb7u2 [1977 kB] Get:513 http://mirror.bm.debian.org/debian/ wheezy/main libgs9 amd64 9.05~dfsg-6.3+deb7u2 [1844 kB] Get:514 http://mirror.bm.debian.org/debian/ wheezy/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2 [3364 kB] Get:515 http://mirror.bm.debian.org/debian/ wheezy/main ghostscript amd64 9.05~dfsg-6.3+deb7u2 [80.3 kB] Get:516 http://mirror.bm.debian.org/debian/ wheezy/main libgirepository-1.0-1 amd64 1.32.1-1 [107 kB] Get:517 http://mirror.bm.debian.org/debian/ wheezy/main gir1.2-glib-2.0 amd64 1.32.1-1 [171 kB] Get:518 http://mirror.bm.debian.org/debian/ wheezy/main glam2 amd64 1064-1 [258 kB] Get:519 http://mirror.bm.debian.org/debian/ wheezy/main gnuplot-nox amd64 4.6.0-8 [980 kB] Get:520 http://mirror.bm.debian.org/debian/ wheezy/main gnuplot all 4.6.0-8 [73.9 kB] Get:521 http://mirror.bm.debian.org/debian/ wheezy/main libcdt4 amd64 2.26.3-14+deb7u2 [60.0 kB] Get:522 http://mirror.bm.debian.org/debian/ wheezy/main libcgraph5 amd64 2.26.3-14+deb7u2 [88.1 kB] Get:523 http://mirror.bm.debian.org/debian/ wheezy/main libgraph4 amd64 2.26.3-14+deb7u2 [74.0 kB] Get:524 http://mirror.bm.debian.org/debian/ wheezy/main libpathplan4 amd64 2.26.3-14+deb7u2 [65.3 kB] Get:525 http://mirror.bm.debian.org/debian/ wheezy/main libxdot4 amd64 2.26.3-14+deb7u2 [54.4 kB] Get:526 http://mirror.bm.debian.org/debian/ wheezy/main libgvc5 amd64 2.26.3-14+deb7u2 [544 kB] Get:527 http://mirror.bm.debian.org/debian/ wheezy/main libgvpr1 amd64 2.26.3-14+deb7u2 [244 kB] Get:528 http://mirror.bm.debian.org/debian/ wheezy/main graphviz amd64 2.26.3-14+deb7u2 [378 kB] Get:529 http://mirror.bm.debian.org/debian/ wheezy/main libgetopt-euclid-perl all 0.3.5-1 [47.5 kB] Get:530 http://mirror.bm.debian.org/debian/ wheezy/main libmath-random-mt-perl amd64 1.15-2 [17.0 kB] Get:531 http://mirror.bm.debian.org/debian/ wheezy/main grinder all 0.4.5-1 [99.5 kB] Get:532 http://mirror.bm.debian.org/debian/ wheezy/main groff amd64 1.21-9 [3593 kB] Get:533 http://mirror.bm.debian.org/debian/ wheezy/main heirloom-mailx amd64 12.5-2+deb7u1 [274 kB] Get:534 http://mirror.bm.debian.org/debian/ wheezy/main hicolor-icon-theme all 0.12-1 [11.7 kB] Get:535 http://mirror.bm.debian.org/debian/ wheezy/main hmmer amd64 3.0-4 [2217 kB] Get:536 http://mirror.bm.debian.org/debian/ wheezy/main imagemagick amd64 8:6.7.7.10-5+deb7u4 [285 kB] Get:537 http://mirror.bm.debian.org/debian/ wheezy/main infernal amd64 1.0.2-2 [4859 kB] Get:538 http://mirror.bm.debian.org/debian/ wheezy/main unzip amd64 6.0-8+deb7u5 [195 kB] Get:539 http://mirror.bm.debian.org/debian/ wheezy/main java-wrappers all 0.1.25 [10.8 kB] Get:540 http://mirror.bm.debian.org/debian/ wheezy/main libjmol-java all 12.2.32+dfsg2-1 [8308 kB] Get:541 http://mirror.bm.debian.org/debian/ wheezy/main icedtea-netx-common all 1.4-3~deb7u2 [855 kB] Get:542 http://mirror.bm.debian.org/debian/ wheezy/main jmol-applet all 12.2.32+dfsg2-1 [4793 kB] Get:543 http://mirror.bm.debian.org/debian/ wheezy/main libapache-mime4j-java all 0.6.1-2 [312 kB] Get:544 http://mirror.bm.debian.org/debian/ wheezy/main libcastor-core-java all 1.3.2-1 [52.4 kB] Get:545 http://mirror.bm.debian.org/debian/ wheezy/main libcastor-xml-java all 1.3.2-1 [746 kB] Get:546 http://mirror.bm.debian.org/debian/ wheezy/main libhttpcore-java all 4.1.4-2.1 [345 kB] Get:547 http://mirror.bm.debian.org/debian/ wheezy/main libhttpclient-java all 4.1.1-2+deb7u1 [327 kB] Get:548 http://mirror.bm.debian.org/debian/ wheezy/main libhttpmime-java all 4.1.1-2+deb7u1 [34.2 kB] Get:549 http://mirror.bm.debian.org/debian/ wheezy/main libjaba-client-java all 0+dfsg-1 [65.0 kB] Get:550 http://mirror.bm.debian.org/debian/ wheezy/main libjswingreader-java all 0.3-1 [80.0 kB] Get:551 http://mirror.bm.debian.org/debian/ wheezy/main libmiglayout-java all 3.7.4-2 [269 kB] Get:552 http://mirror.bm.debian.org/debian/ wheezy/main libvamsas-client-java all 0.2~git2011.10.17+1b42648-1 [521 kB] Get:553 http://mirror.bm.debian.org/debian/ wheezy/main openjdk-6-jdk amd64 6b38-1.13.10-1~deb7u1 [16.0 MB] Get:554 http://mirror.bm.debian.org/debian/ wheezy/main jalview all 2.7.dfsg-2 [3335 kB] Get:555 http://mirror.bm.debian.org/debian/ wheezy/main wwwconfig-common all 0.2.2 [22.8 kB] Get:556 http://mirror.bm.debian.org/debian/ wheezy/main javascript-common all 7 [3810 B] Get:557 http://mirror.bm.debian.org/debian/ wheezy/main jellyfish amd64 1.1.5-1 [412 kB] Get:558 http://mirror.bm.debian.org/debian/ wheezy/main jmol all 12.2.32+dfsg2-1 [259 kB] Get:559 http://mirror.bm.debian.org/debian/ wheezy/main kalign amd64 1:2.03+20110620-2 [94.8 kB] Get:560 http://mirror.bm.debian.org/debian/ wheezy/main laptop-detect amd64 0.13.7 [5224 B] Get:561 http://mirror.bm.debian.org/debian/ wheezy/main liberror-perl all 0.17-1 [23.6 kB] Get:562 http://mirror.bm.debian.org/debian/ wheezy/main libipc-sharelite-perl amd64 0.17-2 [27.3 kB] Get:563 http://mirror.bm.debian.org/debian/ wheezy/main libcache-cache-perl all 1.06-2 [79.3 kB] Get:564 http://mirror.bm.debian.org/debian/ wheezy/main libace-perl amd64 1.92-2+b2 [351 kB] Get:565 http://mirror.bm.debian.org/debian/ wheezy/main libfann2 amd64 2.1.0~beta~dfsg-8 [138 kB] Get:566 http://mirror.bm.debian.org/debian/ wheezy/main libai-fann-perl amd64 0.10-1 [36.9 kB] Get:567 http://mirror.bm.debian.org/debian/ wheezy/main libalgorithm-c3-perl all 0.08-1 [11.8 kB] Get:568 http://mirror.bm.debian.org/debian/ wheezy/main libalgorithm-diff-perl all 1.19.02-2 [51.5 kB] Get:569 http://mirror.bm.debian.org/debian/ wheezy/main libalgorithm-diff-xs-perl amd64 0.04-2+b1 [12.9 kB] Get:570 http://mirror.bm.debian.org/debian/ wheezy/main libalgorithm-merge-perl all 0.08-2 [13.5 kB] Get:571 http://mirror.bm.debian.org/debian/ wheezy/main libalgorithm-munkres-perl all 0.08-2 [12.5 kB] Get:572 http://mirror.bm.debian.org/debian/ wheezy/main libperl5.14 amd64 5.14.2-21+deb7u3 [1188 B] Get:573 http://mirror.bm.debian.org/debian/ wheezy/main libdevel-symdump-perl all 2.08-4 [16.6 kB] Get:574 http://mirror.bm.debian.org/debian/ wheezy/main libapache2-mod-perl2 amd64 2.0.7-3 [1081 kB] Get:575 http://mirror.bm.debian.org/debian/ wheezy/main libapache-dbi-perl all 1.11-1 [54.3 kB] Get:576 http://mirror.bm.debian.org/debian/ wheezy/main libapache2-reload-perl all 0.12-1 [17.9 kB] Get:577 http://mirror.bm.debian.org/debian/ wheezy/main libparams-util-perl amd64 1.07-1 [25.7 kB] Get:578 http://mirror.bm.debian.org/debian/ wheezy/main libsub-install-perl all 0.926-1 [11.2 kB] Get:579 http://mirror.bm.debian.org/debian/ wheezy/main libdata-optlist-perl all 0.107-1 [10.7 kB] Get:580 http://mirror.bm.debian.org/debian/ wheezy/main libparams-classify-perl amd64 0.013-4 [26.0 kB] Get:581 http://mirror.bm.debian.org/debian/ wheezy/main libmodule-runtime-perl all 0.013-1 [17.8 kB] Get:582 http://mirror.bm.debian.org/debian/ wheezy/main libtry-tiny-perl all 0.11-1 [18.0 kB] Get:583 http://mirror.bm.debian.org/debian/ wheezy/main libmodule-implementation-perl all 0.06-1 [12.8 kB] Get:584 http://mirror.bm.debian.org/debian/ wheezy/main liblist-moreutils-perl amd64 0.33-1+b1 [52.5 kB] Get:585 http://mirror.bm.debian.org/debian/ wheezy/main libpackage-deprecationmanager-perl all 0.13-1 [13.9 kB] Get:586 http://mirror.bm.debian.org/debian/ wheezy/main libpackage-stash-perl all 0.33-1 [19.5 kB] Get:587 http://mirror.bm.debian.org/debian/ wheezy/main libclass-load-perl all 0.17-1 [13.0 kB] Get:588 http://mirror.bm.debian.org/debian/ wheezy/main libclass-load-xs-perl amd64 0.04-1 [13.3 kB] Get:589 http://mirror.bm.debian.org/debian/ wheezy/main libsub-exporter-perl all 0.984-1 [52.4 kB] Get:590 http://mirror.bm.debian.org/debian/ wheezy/main libdevel-globaldestruction-perl all 0.06-1 [8432 B] Get:591 http://mirror.bm.debian.org/debian/ wheezy/main libeval-closure-perl all 0.08-1 [11.1 kB] Get:592 http://mirror.bm.debian.org/debian/ wheezy/main libclass-c3-perl all 0.24-1 [23.8 kB] Get:593 http://mirror.bm.debian.org/debian/ wheezy/main libmro-compat-perl all 0.11-1 [12.7 kB] Get:594 http://mirror.bm.debian.org/debian/ wheezy/main libpackage-stash-xs-perl amd64 0.24-1+b1 [20.2 kB] Get:595 http://mirror.bm.debian.org/debian/ wheezy/main libsub-name-perl amd64 0.05-1+b2 [10.2 kB] Get:596 http://mirror.bm.debian.org/debian/ wheezy/main libtask-weaken-perl all 1.03-1 [7690 B] Get:597 http://mirror.bm.debian.org/debian/ wheezy/main libmoose-perl amd64 2.0603-1 [882 kB] Get:598 http://mirror.bm.debian.org/debian/ wheezy/main libarray-compare-perl all 2.02-1 [14.6 kB] Get:599 http://mirror.bm.debian.org/debian/ wheezy/main libvariable-magic-perl amd64 0.50-1 [43.3 kB] Get:600 http://mirror.bm.debian.org/debian/ wheezy/main libb-hooks-endofscope-perl all 0.11-1 [7322 B] Get:601 http://mirror.bm.debian.org/debian/ wheezy/main libbio-asn1-entrezgene-perl all 1.100-1 [40.6 kB] Get:602 http://mirror.bm.debian.org/debian/ wheezy/main libstaden-read1 amd64 1.12.4-1 [143 kB] Get:603 http://mirror.bm.debian.org/debian/ wheezy/main libbio-scf-perl amd64 1.03-1+b2 [23.8 kB] Get:604 http://mirror.bm.debian.org/debian/ wheezy/main libcarp-clan-perl all 6.04-1 [15.8 kB] Get:605 http://mirror.bm.debian.org/debian/ wheezy/main libbit-vector-perl amd64 7.2-1 [172 kB] Get:606 http://mirror.bm.debian.org/debian/ wheezy/main libblas-dev amd64 1.2.20110419-5 [312 kB] Get:607 http://mirror.bm.debian.org/debian/ wheezy/main libboost-filesystem1.49.0 amd64 1.49.0-3.2 [78.3 kB] Get:608 http://mirror.bm.debian.org/debian/ wheezy/main libbsd-resource-perl amd64 1.2904-1+b2 [31.9 kB] Get:609 http://mirror.bm.debian.org/debian/ wheezy/main libbz2-dev amd64 1.0.6-4 [32.8 kB] Get:610 http://mirror.bm.debian.org/debian/ wheezy/main libclass-c3-xs-perl amd64 0.13-1+b2 [16.1 kB] Get:611 http://mirror.bm.debian.org/debian/ wheezy/main libclass-inspector-perl all 1.27-1 [20.6 kB] Get:612 http://mirror.bm.debian.org/debian/ wheezy/main libclone-perl amd64 0.31-1+b2 [13.3 kB] Get:613 http://mirror.bm.debian.org/debian/ wheezy/main libcommon-sense-perl all 3.6-1 [23.7 kB] Get:614 http://mirror.bm.debian.org/debian/ wheezy/main libconvert-binary-c-perl amd64 0.76-1+b2 [314 kB] Get:615 http://mirror.bm.debian.org/debian/ wheezy/main libconvert-binhex-perl all 1.119+pristine-3 [30.3 kB] Get:616 http://mirror.bm.debian.org/debian/ wheezy/main libcrypt-ssleay-perl amd64 0.58-1 [51.8 kB] Get:617 http://mirror.bm.debian.org/debian/ wheezy/main libdate-calc-perl all 6.3-1 [218 kB] Get:618 http://mirror.bm.debian.org/debian/ wheezy/main libdate-calc-xs-perl amd64 6.3-1 [65.1 kB] Get:619 http://mirror.bm.debian.org/debian/ wheezy/main libdate-manip-perl all 6.32-1 [2870 kB] Get:620 http://mirror.bm.debian.org/debian/ wheezy/main libdbd-pg-perl amd64 2.19.2-2+deb7u1 [220 kB] Get:621 http://mirror.bm.debian.org/debian/ wheezy/main libsub-identify-perl amd64 0.04-1+b2 [9736 B] Get:622 http://mirror.bm.debian.org/debian/ wheezy/main libnamespace-clean-perl all 0.23-1 [16.6 kB] Get:623 http://mirror.bm.debian.org/debian/ wheezy/main libdevel-partialdump-perl all 0.15-1 [13.3 kB] Get:624 http://mirror.bm.debian.org/debian/ wheezy/main libexiv2-12 amd64 0.23-1 [807 kB] Get:625 http://mirror.bm.debian.org/debian/ wheezy/main libfcgi-perl amd64 0.74-1+b1 [42.8 kB] Get:626 http://mirror.bm.debian.org/debian/ wheezy/main libfile-basedir-perl all 0.03-1 [10.4 kB] Get:627 http://mirror.bm.debian.org/debian/ wheezy/main libfile-desktopentry-perl all 0.04-3 [19.0 kB] Get:628 http://mirror.bm.debian.org/debian/ wheezy/main libfile-fcntllock-perl amd64 0.14-2 [17.2 kB] Get:629 http://mirror.bm.debian.org/debian/ wheezy/main libfile-mimeinfo-perl all 0.16-1 [52.1 kB] Get:630 http://mirror.bm.debian.org/debian/ wheezy/main libfont-afm-perl all 1.20-1 [14.4 kB] Get:631 http://mirror.bm.debian.org/debian/ wheezy/main libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:632 http://mirror.bm.debian.org/debian/ wheezy/main libftgl2 amd64 2.1.3~rc5-4 [110 kB] Get:633 http://mirror.bm.debian.org/debian/ wheezy/main libg20 amd64 0.72-2.1 [51.5 kB] Get:634 http://mirror.bm.debian.org/debian/ wheezy/main libsvg-perl all 2.52-1 [85.0 kB] Get:635 http://mirror.bm.debian.org/debian/ wheezy/main libgd-svg-perl all 0.33-1 [64.8 kB] Get:636 http://mirror.bm.debian.org/debian/ wheezy/main libgeronimo-jta-1.1-spec-java all 1.1.1-2 [11.9 kB] Get:637 http://mirror.bm.debian.org/debian/ wheezy/main libgl1-mesa-dri amd64 8.0.5-4+deb7u2 [21.7 MB] Get:638 http://mirror.bm.debian.org/debian/ wheezy/main libglib2.0-data all 2.33.12+really2.32.4-5 [1607 kB] Get:639 http://mirror.bm.debian.org/debian/ wheezy/main libheap-perl all 0.80-2 [43.0 kB] Get:640 http://mirror.bm.debian.org/debian/ wheezy/main libgraph-perl all 1:0.91-1 [132 kB] Get:641 http://mirror.bm.debian.org/debian/ wheezy/main libio-pty-perl amd64 1:1.08-1+b2 [40.0 kB] Get:642 http://mirror.bm.debian.org/debian/ wheezy/main libipc-run-perl all 0.92-1 [110 kB] Get:643 http://mirror.bm.debian.org/debian/ wheezy/main libxml-parser-perl amd64 2.41-1+b1 [278 kB] Get:644 http://mirror.bm.debian.org/debian/ wheezy/main libxml-twig-perl all 1:3.39-1 [189 kB] Get:645 http://mirror.bm.debian.org/debian/ wheezy/main libxml-xpath-perl all 1.13-7 [79.6 kB] Get:646 http://mirror.bm.debian.org/debian/ wheezy/main libparse-recdescent-perl all 1.967009+dfsg-1 [172 kB] Get:647 http://mirror.bm.debian.org/debian/ wheezy/main libgraphviz-perl all 2.10-1 [113 kB] Get:648 http://mirror.bm.debian.org/debian/ wheezy/main libgtk2.0-bin amd64 2.24.10-2 [477 kB] Get:649 http://mirror.bm.debian.org/debian/ wheezy/main libhtml-form-perl all 6.03-1 [23.9 kB] Get:650 http://mirror.bm.debian.org/debian/ wheezy/main libhtml-format-perl all 2.10-1 [42.1 kB] Get:651 http://mirror.bm.debian.org/debian/ wheezy/main libhtml-template-perl all 2.91-1 [72.0 kB] Get:652 http://mirror.bm.debian.org/debian/ wheezy/main xorg-sgml-doctools all 1:1.10-1 [24.1 kB] Get:653 http://mirror.bm.debian.org/debian/ wheezy/main x11proto-core-dev all 7.0.23-1 [774 kB] Get:654 http://mirror.bm.debian.org/debian/ wheezy/main libice-dev amd64 2:1.0.8-2 [74.1 kB] Get:655 http://mirror.bm.debian.org/debian/ wheezy/main libsocket-perl amd64 2.002-1 [40.0 kB] Get:656 http://mirror.bm.debian.org/debian/ wheezy/main libio-socket-ip-perl all 0.16-2 [23.6 kB] Get:657 http://mirror.bm.debian.org/debian/ wheezy/main libio-stringy-perl all 2.110-5 [98.3 kB] Get:658 http://mirror.bm.debian.org/debian/ wheezy/main libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:659 http://mirror.bm.debian.org/debian/ wheezy/main libjpeg8-dev amd64 8d-1+deb7u1 [245 kB] Get:660 http://mirror.bm.debian.org/debian/ wheezy/main libjs-jquery all 1.7.2+dfsg-1 [80.1 kB] Get:661 http://mirror.bm.debian.org/debian/ wheezy/main libjs-underscore all 1.1.6-1+deb7u1 [30.8 kB] Get:662 http://mirror.bm.debian.org/debian/ wheezy/main libjson-xs-perl amd64 2.320-1+b1 [89.1 kB] Get:663 http://mirror.bm.debian.org/debian/ wheezy/main liblapack-dev amd64 3.4.1+dfsg-1+deb70u1 [5548 kB] Get:664 http://mirror.bm.debian.org/debian/ wheezy/main libmailtools-perl all 2.09-1 [97.6 kB] Get:665 http://mirror.bm.debian.org/debian/ wheezy/main libmath-derivative-perl all 0.01-6 [6214 B] Get:666 http://mirror.bm.debian.org/debian/ wheezy/main libmath-spline-perl all 0.01-4 [7680 B] Get:667 http://mirror.bm.debian.org/debian/ wheezy/main libmime-tools-perl all 5.503-1 [242 kB] Get:668 http://mirror.bm.debian.org/debian/ wheezy/main libmldbm-perl all 2.04-1 [19.1 kB] Get:669 http://mirror.bm.debian.org/debian/ wheezy/main libtinfo-dev amd64 5.9-10 [105 kB] Get:670 http://mirror.bm.debian.org/debian/ wheezy/main libncurses5-dev amd64 5.9-10 [223 kB] Get:671 http://mirror.bm.debian.org/debian/ wheezy/main libnet-dbus-perl amd64 1.0.0-1+b1 [220 kB] Get:672 http://mirror.bm.debian.org/debian/ wheezy/main libnetpbm10 amd64 2:10.0-15+b1 [94.4 kB] Get:673 http://mirror.bm.debian.org/debian/ wheezy/main libole-storage-lite-perl all 0.19-1 [26.1 kB] Get:674 http://mirror.bm.debian.org/debian/ wheezy/main libossp-uuid16 amd64 1.6.2-1.3 [58.8 kB] Get:675 http://mirror.bm.debian.org/debian/ wheezy/main libossp-uuid-perl amd64 1.6.2-1.3 [31.6 kB] Get:676 http://mirror.bm.debian.org/debian/ wheezy/main libpaper-utils amd64 1.1.24+nmu2 [18.3 kB] Get:677 http://mirror.bm.debian.org/debian/ wheezy/main libpcre3-dev amd64 1:8.30-5 [349 kB] Get:678 http://mirror.bm.debian.org/debian/ wheezy/main zlib1g-dev amd64 1:1.2.7.dfsg-13 [215 kB] Get:679 http://mirror.bm.debian.org/debian/ wheezy/main libpng12-dev amd64 1.2.49-1+deb7u2 [267 kB] Get:680 http://mirror.bm.debian.org/debian/ wheezy/main libpostscript-perl all 0.06-2 [31.4 kB] Get:681 http://mirror.bm.debian.org/debian/ wheezy/main libpthread-stubs0 amd64 0.3-3 [3228 B] Get:682 http://mirror.bm.debian.org/debian/ wheezy/main libpthread-stubs0-dev amd64 0.3-3 [3998 B] Get:683 http://mirror.bm.debian.org/debian/ wheezy/main libreadline6-dev amd64 6.2+dfsg-0.1 [193 kB] Get:684 http://mirror.bm.debian.org/debian/ wheezy/main libreadline-dev amd64 6.2+dfsg-0.1 [896 B] Get:685 http://mirror.bm.debian.org/debian/ wheezy/main librsvg2-common amd64 2.36.1-2+deb7u1 [162 kB] Get:686 http://mirror.bm.debian.org/debian/ wheezy/main libruby1.9.1 amd64 1.9.3.194-8.1+deb7u5 [4414 kB] Get:687 http://mirror.bm.debian.org/debian/ wheezy/main libsam-java all 1.46-1 [197 kB] Get:688 http://mirror.bm.debian.org/debian/ wheezy/main libsasl2-modules amd64 2.1.25.dfsg1-6+deb7u1 [116 kB] Get:689 http://mirror.bm.debian.org/debian/ wheezy/main libsm-dev amd64 2:1.2.1-2 [37.0 kB] Get:690 http://mirror.bm.debian.org/debian/ wheezy/main libsoap-lite-perl all 0.714-1 [343 kB] Get:691 http://mirror.bm.debian.org/debian/ wheezy/main libsort-naturally-perl all 1.02-1 [14.3 kB] Get:692 http://mirror.bm.debian.org/debian/ wheezy/main libspreadsheet-writeexcel-perl all 2.37-1 [741 kB] Get:693 http://mirror.bm.debian.org/debian/ wheezy/main libunicode-map-perl amd64 0.112-10+b3 [451 kB] Get:694 http://mirror.bm.debian.org/debian/ wheezy/main libspreadsheet-parseexcel-perl all 0.5800-1 [166 kB] Get:695 http://mirror.bm.debian.org/debian/ wheezy/main libsprng2 amd64 2.0a-8 [95.9 kB] Get:696 http://mirror.bm.debian.org/debian/ wheezy/main libsquizz amd64 0.99a-2 [436 kB] Get:697 http://mirror.bm.debian.org/debian/ wheezy/main libtree-dagnode-perl all 1.06-1 [51.8 kB] Get:698 http://mirror.bm.debian.org/debian/ wheezy/main libsvg-graph-perl all 0.02-2 [130 kB] Get:699 http://mirror.bm.debian.org/debian/ wheezy/main libtcmalloc-minimal4 amd64 2.0-2 [177 kB] Get:700 http://mirror.bm.debian.org/debian/ wheezy/main libterm-readline-gnu-perl amd64 1.20-2+b1 [110 kB] Get:701 http://mirror.bm.debian.org/debian/ wheezy/main libtie-ixhash-perl all 1.21-2 [12.0 kB] Get:702 http://mirror.bm.debian.org/debian/ wheezy/main libutempter0 amd64 1.1.5-4 [8020 B] Get:703 http://mirror.bm.debian.org/debian/ wheezy/main libvte-common all 1:0.28.2-5 [435 kB] Get:704 http://mirror.bm.debian.org/debian/ wheezy/main libvte9 amd64 1:0.28.2-5 [726 kB] Get:705 http://mirror.bm.debian.org/debian/ wheezy/main libxau-dev amd64 1:1.0.7-1 [21.7 kB] Get:706 http://mirror.bm.debian.org/debian/ wheezy/main libxdmcp-dev amd64 1:1.1.1-1 [42.3 kB] Get:707 http://mirror.bm.debian.org/debian/ wheezy/main x11proto-input-dev all 2.2-1 [172 kB] Get:708 http://mirror.bm.debian.org/debian/ wheezy/main x11proto-kb-dev all 1.0.6-2 [269 kB] Get:709 http://mirror.bm.debian.org/debian/ wheezy/main xtrans-dev all 1.2.7-1 [112 kB] Get:710 http://mirror.bm.debian.org/debian/ wheezy/main libxcb1-dev amd64 1.8.1-2+deb7u1 [88.2 kB] Get:711 http://mirror.bm.debian.org/debian/ wheezy/main libx11-dev amd64 2:1.5.0-1+deb7u2 [1038 kB] Get:712 http://mirror.bm.debian.org/debian/ wheezy/main libx11-doc all 2:1.5.0-1+deb7u2 [2609 kB] Get:713 http://mirror.bm.debian.org/debian/ wheezy/main libx11-protocol-perl all 0.56-4 [162 kB] Get:714 http://mirror.bm.debian.org/debian/ wheezy/main libxml-perl all 0.08-2 [113 kB] Get:715 http://mirror.bm.debian.org/debian/ wheezy/main libxml-regexp-perl all 0.04-1 [8370 B] Get:716 http://mirror.bm.debian.org/debian/ wheezy/main libxml-dom-perl all 1.44-1 [184 kB] Get:717 http://mirror.bm.debian.org/debian/ wheezy/main libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:718 http://mirror.bm.debian.org/debian/ wheezy/main libxml-dom-xpath-perl all 0.14-1 [9622 B] Get:719 http://mirror.bm.debian.org/debian/ wheezy/main libxml-namespacesupport-perl all 1.09-3 [15.3 kB] Get:720 http://mirror.bm.debian.org/debian/ wheezy/main libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:721 http://mirror.bm.debian.org/debian/ wheezy/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:722 http://mirror.bm.debian.org/debian/ wheezy/main libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:723 http://mirror.bm.debian.org/debian/ wheezy/main libxml-libxml-perl amd64 2.0001+dfsg-1+deb7u1 [413 kB] Get:724 http://mirror.bm.debian.org/debian/ wheezy/main libxml-libxslt-perl amd64 1.77-1 [54.0 kB] Get:725 http://mirror.bm.debian.org/debian/ wheezy/main libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:726 http://mirror.bm.debian.org/debian/ wheezy/main libxml-sax-writer-perl all 0.53-1 [24.0 kB] Get:727 http://mirror.bm.debian.org/debian/ wheezy/main libxml-simple-perl all 2.20-1 [74.7 kB] Get:728 http://mirror.bm.debian.org/debian/ wheezy/main libxml-writer-perl all 0.615-1 [30.3 kB] Get:729 http://mirror.bm.debian.org/debian/ wheezy/main libxt-dev amd64 1:1.1.3-1+deb7u1 [518 kB] Get:730 http://mirror.bm.debian.org/debian/ wheezy/main libyaml-perl all 0.81-1 [72.4 kB] Get:731 http://mirror.bm.debian.org/debian/ wheezy/main loki amd64 2.4.7.4-4 [404 kB] Get:732 http://mirror.bm.debian.org/debian/ wheezy/main manpages-dev all 3.44-1 [1737 kB] Get:733 http://mirror.bm.debian.org/debian/ wheezy/main maq amd64 0.7.1-5 [321 kB] Get:734 http://mirror.bm.debian.org/debian/ wheezy/main maqview amd64 0.2.5-4 [366 kB] Get:735 http://mirror.bm.debian.org/debian/ wheezy/main massxpert-data all 3.2.3-1 [247 kB] Get:736 http://mirror.bm.debian.org/debian/ wheezy/main massxpert amd64 3.2.3-1 [1149 kB] Get:737 http://mirror.bm.debian.org/debian/ wheezy/main melting amd64 4.3c-2 [650 kB] Get:738 http://mirror.bm.debian.org/debian/ wheezy/main mipe all 1.1-4 [67.5 kB] Get:739 http://mirror.bm.debian.org/debian/ wheezy/main mira-assembler amd64 3.4.0.1-3 [3667 kB] Get:740 http://mirror.bm.debian.org/debian/ wheezy/main mlv-smile amd64 1.47-3 [256 kB] Get:741 http://mirror.bm.debian.org/debian/ wheezy/main mothur amd64 1.24.1-1 [4629 kB] Get:742 http://mirror.bm.debian.org/debian/ wheezy/main libhmsbeagle1 amd64 1.0-6 [141 kB] Get:743 http://mirror.bm.debian.org/debian/ wheezy/main mrbayes amd64 3.2.1+dfsg-1 [554 kB] Get:744 http://mirror.bm.debian.org/debian/ wheezy/main muscle amd64 1:3.8.31-1 [169 kB] Get:745 http://mirror.bm.debian.org/debian/ wheezy/main mustang amd64 3.2.1-3 [97.6 kB] Get:746 http://mirror.bm.debian.org/debian/ wheezy/main ncbi-blast+ amd64 2.2.26-3 [11.2 MB] Get:747 http://mirror.bm.debian.org/debian/ wheezy/main ncbi-epcr amd64 2.3.12-1-1 [197 kB] Get:748 http://mirror.bm.debian.org/debian/ wheezy/main ncbi-tools-bin amd64 6.1.20120620-2 [695 kB] Get:749 http://mirror.bm.debian.org/debian/ wheezy/main ncbi-tools-x11 amd64 6.1.20120620-2 [1341 kB] Get:750 http://mirror.bm.debian.org/debian/ wheezy/main ncoils amd64 2002-3 [22.7 kB] Get:751 http://mirror.bm.debian.org/debian/ wheezy/main netpbm amd64 2:10.0-15+b1 [1349 kB] Get:752 http://mirror.bm.debian.org/debian/ wheezy/main njplot amd64 2.4-1 [125 kB] Get:753 http://mirror.bm.debian.org/debian/ wheezy/main perl-doc all 5.14.2-21+deb7u3 [8166 kB] Get:754 http://mirror.bm.debian.org/debian/ wheezy/main perl-tk amd64 1:804.030-1 [2524 kB] Get:755 http://mirror.bm.debian.org/debian/ wheezy/main perlprimer all 1.1.21-1 [117 kB] Get:756 http://mirror.bm.debian.org/debian/ wheezy/main phyml amd64 2:20110919-1 [1075 kB] Get:757 http://mirror.bm.debian.org/debian/ wheezy/main picard-tools all 1.46-1 [384 kB] Get:758 http://mirror.bm.debian.org/debian/ wheezy/main python-tk amd64 2.7.3-1 [50.9 kB] Get:759 http://mirror.bm.debian.org/debian/ wheezy/main plasmidomics all 0.2.0-2 [6386 B] Get:760 http://mirror.bm.debian.org/debian/ wheezy/main plink amd64 1.07-3 [1286 kB] Get:761 http://mirror.bm.debian.org/debian/ wheezy/main poa amd64 2.0+20060928-3 [50.8 kB] Get:762 http://mirror.bm.debian.org/debian/ wheezy/main primer3 amd64 2.2.3-1 [189 kB] Get:763 http://mirror.bm.debian.org/debian/ wheezy/main probalign amd64 1.4-2 [76.8 kB] Get:764 http://mirror.bm.debian.org/debian/ wheezy/main probcons amd64 1.12-9 [196 kB] Get:765 http://mirror.bm.debian.org/debian/ wheezy/main proda amd64 1.0-8 [58.3 kB] Get:766 http://mirror.bm.debian.org/debian/ wheezy/main psutils amd64 1.17.dfsg-1 [75.0 kB] Get:767 http://mirror.bm.debian.org/debian/ wheezy/main python-pmw all 1.3.2-6 [120 kB] Get:768 http://mirror.bm.debian.org/debian/ wheezy/main pymol amd64 1.5.0.1-2 [7613 kB] Get:769 http://mirror.bm.debian.org/debian/ wheezy/main python-cairo amd64 1.8.8-1+b2 [84.2 kB] Get:770 http://mirror.bm.debian.org/debian/ wheezy/main python-dateutil all 1.5+dfsg-0.1 [55.3 kB] Get:771 http://mirror.bm.debian.org/debian/ wheezy/main python-egenix-mxtools amd64 3.2.1-1.1 [110 kB] Get:772 http://mirror.bm.debian.org/debian/ wheezy/main python-egenix-mxdatetime amd64 3.2.1-1.1 [111 kB] Get:773 http://mirror.bm.debian.org/debian/ wheezy/main python-gi amd64 3.2.2-2 [518 kB] Get:774 http://mirror.bm.debian.org/debian/ wheezy/main python-numpy amd64 1:1.6.2-1.2 [2632 kB] Get:775 http://mirror.bm.debian.org/debian/ wheezy/main python-gobject-2 amd64 2.28.6-10 [555 kB] Get:776 http://mirror.bm.debian.org/debian/ wheezy/main python-gtk2 amd64 2.24.0-3+b1 [1805 kB] Get:777 http://mirror.bm.debian.org/debian/ wheezy/main python-glade2 amd64 2.24.0-3+b1 [45.8 kB] Get:778 http://mirror.bm.debian.org/debian/ wheezy/main python-gobject all 3.2.2-2 [162 kB] Get:779 http://mirror.bm.debian.org/debian/ wheezy/main python-imaging amd64 1.1.7-4+deb7u2 [460 kB] Get:780 http://mirror.bm.debian.org/debian/ wheezy/main python-lxml amd64 2.3.2-1+deb7u1 [1238 kB] Get:781 http://mirror.bm.debian.org/debian/ wheezy/main python-markupsafe amd64 0.15-1 [14.6 kB] Get:782 http://mirror.bm.debian.org/debian/ wheezy/main python-mako all 0.7.0-1.1 [59.3 kB] Get:783 http://mirror.bm.debian.org/debian/ wheezy/main python-matplotlib-data all 1.1.1~rc2-1 [2057 kB] Get:784 http://mirror.bm.debian.org/debian/ wheezy/main python-pyparsing all 1.5.6+dfsg1-2 [64.7 kB] Get:785 http://mirror.bm.debian.org/debian/ wheezy/main python-tz all 2012c-1 [39.9 kB] Get:786 http://mirror.bm.debian.org/debian/ wheezy/main python-matplotlib amd64 1.1.1~rc2-1 [2695 kB] Get:787 http://mirror.bm.debian.org/debian/ wheezy/main python-mysqldb amd64 1.2.3-2 [92.8 kB] Get:788 http://mirror.bm.debian.org/debian/ wheezy/main python-pysqlite2 amd64 2.6.3-3 [69.6 kB] Get:789 http://mirror.bm.debian.org/debian/ wheezy/main python-sqlalchemy all 0.7.8-1 [559 kB] Get:790 http://mirror.bm.debian.org/debian/ wheezy/main python-sqlalchemy-ext amd64 0.7.8-1 [99.3 kB] Get:791 http://mirror.bm.debian.org/debian/ wheezy/main zip amd64 3.0-6 [336 kB] Get:792 http://mirror.bm.debian.org/debian/ wheezy/main xdg-utils all 1.1.0~rc1+git20111210-6+deb7u3 [82.5 kB] Get:793 http://mirror.bm.debian.org/debian/ wheezy/main r-base-core amd64 2.15.1-4 [20.6 MB] Get:794 http://mirror.bm.debian.org/debian/ wheezy/main r-base-dev all 2.15.1-4 [3882 B] Get:795 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-dbi amd64 0.2-5-2 [396 kB] Get:796 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-rsqlite amd64 0.11.1-1 [336 kB] Get:797 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-plyr amd64 1.7.1-1 [678 kB] Get:798 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-stringr all 0.6.0-1 [73.1 kB] Get:799 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-lattice amd64 0.20-6-1 [713 kB] Get:800 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-reshape2 all 1.2.1-1 [59.2 kB] Get:801 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-reshape amd64 0.8.4-1 [125 kB] Get:802 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-proto amd64 0.3-9.2-1 [565 kB] Get:803 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-mass amd64 7.3-19-1 [839 kB] Get:804 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-rcolorbrewer all 1.0-5-1 [24.8 kB] Get:805 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-digest amd64 0.5.2-1 [59.4 kB] Get:806 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-colorspace amd64 1.0.1-1+b1 [318 kB] Get:807 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-ggplot2 all 0.8.9-1 [2640 kB] Get:808 http://mirror.bm.debian.org/debian/ wheezy/main r-bioc-cummerbund all 1.2.0-1 [1205 kB] Get:809 http://mirror.bm.debian.org/debian/ wheezy/main r-bioc-hilbertvis amd64 1.14.0-1 [1051 kB] Get:810 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-boot all 1.3-5-1 [472 kB] Get:811 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-class amd64 7.3-4-1 [70.7 kB] Get:812 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-cluster amd64 1.14.2-1 [396 kB] Get:813 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-codetools all 0.2-8-1 [43.4 kB] Get:814 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-foreign amd64 0.8.50-1 [170 kB] Get:815 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-g.data all 2.0-4 [20.3 kB] Get:816 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-genabel amd64 1.7-0-3 [4291 kB] Get:817 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-kernsmooth amd64 2.23-8-1 [61.5 kB] Get:818 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-matrix amd64 1.0-6-1 [3098 kB] Get:819 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-nlme amd64 3.1.104-1 [1627 kB] Get:820 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-mgcv amd64 1.7-13-1 [1350 kB] Get:821 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-multicore amd64 0.1-7-1 [64.0 kB] Get:822 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-nnet amd64 7.3-4-1 [66.2 kB] Get:823 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-qtl amd64 1.23-16-1 [4440 kB] Get:824 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-survival amd64 2.36-14-1 [2594 kB] Get:825 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-rpart amd64 3.1.54-1 [171 kB] Get:826 http://mirror.bm.debian.org/debian/ wheezy/main r-cran-spatial amd64 7.3-4-1 [106 kB] Get:827 http://mirror.bm.debian.org/debian/ wheezy/main r-doc-html all 2.15.1-4 [634 kB] Get:828 http://mirror.bm.debian.org/debian/ wheezy/main r-other-bio3d all 1.1-4-1 [9402 kB] Get:829 http://mirror.bm.debian.org/debian/ wheezy/main r-other-mott-happy amd64 2.1-7 [128 kB] Get:830 http://mirror.bm.debian.org/debian/ wheezy/main r-recommended all 2.15.1-4 [2678 B] Get:831 http://mirror.bm.debian.org/debian/ wheezy/main libcbf0 amd64 0.7.9.1-3 [118 kB] Get:832 http://mirror.bm.debian.org/debian/ wheezy/main libcvector2 amd64 1.0.3-1 [4644 B] Get:833 http://mirror.bm.debian.org/debian/ wheezy/main rasmol amd64 2.7.5.2-1 [1677 kB] Get:834 http://mirror.bm.debian.org/debian/ wheezy/main raster3d amd64 3.0-2-4 [212 kB] Get:835 http://mirror.bm.debian.org/debian/ wheezy/main raxml amd64 7.2.8-2 [462 kB] Get:836 http://mirror.bm.debian.org/debian/ wheezy/main readseq amd64 1-9 [59.5 kB] Get:837 http://mirror.bm.debian.org/debian/ wheezy/main rnahybrid amd64 2.1.1-1 [312 kB] Get:838 http://mirror.bm.debian.org/debian/ wheezy/main ruby1.9.1 amd64 1.9.3.194-8.1+deb7u5 [209 kB] Get:839 http://mirror.bm.debian.org/debian/ wheezy/main ruby all 1:1.9.3 [6484 B] Get:840 http://mirror.bm.debian.org/debian/ wheezy/main samtools amd64 0.1.18-1 [528 kB] Get:841 http://mirror.bm.debian.org/debian/ wheezy/main sibsim4 amd64 0.20-1 [34.8 kB] Get:842 http://mirror.bm.debian.org/debian/ wheezy/main sigma-align amd64 1.1.3-3 [25.9 kB] Get:843 http://mirror.bm.debian.org/debian/ wheezy/main sim4 amd64 0.0.20030921-3 [54.7 kB] Get:844 http://mirror.bm.debian.org/debian/ wheezy/main squizz amd64 0.99a-2 [30.1 kB] Get:845 http://mirror.bm.debian.org/debian/ wheezy/main sra-toolkit-libs0 amd64 2.1.7a-1 [912 kB] Get:846 http://mirror.bm.debian.org/debian/ wheezy/main sra-toolkit amd64 2.1.7a-1 [1350 kB] Get:847 http://mirror.bm.debian.org/debian/ wheezy/main ssake all 3.8-2 [44.0 kB] Get:848 http://mirror.bm.debian.org/debian/ wheezy/main ssl-cert all 1.0.32+deb7u1 [19.6 kB] Get:849 http://mirror.bm.debian.org/debian/ wheezy/main staden-io-lib-utils amd64 1.12.4-1 [174 kB] Get:850 http://mirror.bm.debian.org/debian/ wheezy/main t-coffee amd64 9.02.r1228-2 [848 kB] Get:851 http://mirror.bm.debian.org/debian/ wheezy/main tabix amd64 0.2.6-1 [60.5 kB] Get:852 http://mirror.bm.debian.org/debian/ wheezy/main tcpd amd64 7.6.q-24 [28.2 kB] Get:853 http://mirror.bm.debian.org/debian/ wheezy/main theseus amd64 1.6.2-2 [1507 kB] Get:854 http://mirror.bm.debian.org/debian/ wheezy/main tigr-glimmer amd64 3.02-2 [442 kB] Get:855 http://mirror.bm.debian.org/debian/ wheezy/main tm-align amd64 20120507-1 [62.9 kB] Get:856 http://mirror.bm.debian.org/debian/ wheezy/main transtermhp amd64 2.09-1 [172 kB] Get:857 http://mirror.bm.debian.org/debian/ wheezy/main tree-puzzle amd64 5.2-7 [148 kB] Get:858 http://mirror.bm.debian.org/debian/ wheezy/main tree-puzzle-doc all 5.2-7 [416 kB] Get:859 http://mirror.bm.debian.org/debian/ wheezy/main treeviewx amd64 0.5.1+20100823-1 [193 kB] Get:860 http://mirror.bm.debian.org/debian/ wheezy/main liblensfun-data all 0.2.5-2 [50.0 kB] Get:861 http://mirror.bm.debian.org/debian/ wheezy/main liblensfun0 amd64 0.2.5-2 [68.3 kB] Get:862 http://mirror.bm.debian.org/debian/ wheezy/main ufraw-batch amd64 0.18-2 [363 kB] Get:863 http://mirror.bm.debian.org/debian/ wheezy/main x11-utils amd64 7.7~1 [233 kB] Get:864 http://mirror.bm.debian.org/debian/ wheezy/main x11-xserver-utils amd64 7.7~3 [189 kB] Get:865 http://mirror.bm.debian.org/debian/ wheezy/main xbitmaps all 1.1.1-1 [31.8 kB] Get:866 http://mirror.bm.debian.org/debian/ wheezy/main xterm amd64 278-4 [613 kB] Get:867 http://mirror.bm.debian.org/debian/ wheezy/main acedb-other amd64 4.9.39+dfsg.01-5 [17.3 kB] Get:868 http://mirror.bm.debian.org/debian/ wheezy/main acedb-other-belvu amd64 4.9.39+dfsg.01-5 [210 kB] Get:869 http://mirror.bm.debian.org/debian/ wheezy/main acedb-other-dotter amd64 4.9.39+dfsg.01-5 [228 kB] Get:870 http://mirror.bm.debian.org/debian/ wheezy/main ampliconnoise amd64 1.25-1 [421 kB] Get:871 http://mirror.bm.debian.org/debian/ wheezy/main autodock-vina amd64 1.1.2-2+b1 [306 kB] Get:872 http://mirror.bm.debian.org/debian/ wheezy/main python-gdata all 2.0.17+dfsg-1 [517 kB] Get:873 http://mirror.bm.debian.org/debian/ wheezy/main bauble all 0.9.7-2 [781 kB] Get:874 http://mirror.bm.debian.org/debian/ wheezy/main bowtie amd64 0.12.7-3 [1285 kB] Get:875 http://mirror.bm.debian.org/debian/ wheezy/main bowtie2 amd64 2.0.0-beta6-3 [980 kB] Get:876 http://mirror.bm.debian.org/debian/ wheezy/main critterding amd64 1.0-beta12.1-1.2 [860 kB] Get:877 http://mirror.bm.debian.org/debian/ wheezy/main disulfinder-data all 1.2.11-2 [2106 kB] Get:878 http://mirror.bm.debian.org/debian/ wheezy/main disulfinder amd64 1.2.11-2+b1 [307 kB] Get:879 http://mirror.bm.debian.org/debian/ wheezy/main dotur amd64 1.53-2 [51.3 kB] Get:880 http://mirror.bm.debian.org/debian/ wheezy/main fasttree amd64 2.1.4-1 [208 kB] Get:881 http://mirror.bm.debian.org/debian/ wheezy/main libffindex0 amd64 0.9.6.1-1 [16.5 kB] Get:882 http://mirror.bm.debian.org/debian/ wheezy/main ffindex amd64 0.9.6.1-1 [24.3 kB] Get:883 http://mirror.bm.debian.org/debian/ wheezy/main gromacs-data all 4.5.5-2 [1853 kB] Get:884 http://mirror.bm.debian.org/debian/ wheezy/main gromacs amd64 4.5.5-2 [9587 kB] Get:885 http://mirror.bm.debian.org/debian/ wheezy/main hhsuite-data all 2.0.15-1 [2522 kB] Get:886 http://mirror.bm.debian.org/debian/ wheezy/main hhsuite amd64 2.0.15-1 [1673 kB] Get:887 http://mirror.bm.debian.org/debian/ wheezy/main icedtea-6-jre-cacao amd64 6b38-1.13.10-1~deb7u1 [814 kB] Get:888 http://mirror.bm.debian.org/debian/ wheezy/main icedtea-6-jre-jamvm amd64 6b38-1.13.10-1~deb7u1 [627 kB] Get:889 http://mirror.bm.debian.org/debian/ wheezy/main icedtea-netx amd64 1.4-3~deb7u2 [20.7 kB] Get:890 http://mirror.bm.debian.org/debian/ wheezy/main librg-reprof-bundle-perl all 1.0.1-1 [8962 kB] Get:891 http://mirror.bm.debian.org/debian/ wheezy/main profphd-utils amd64 1.0.9-1 [413 kB] Get:892 http://mirror.bm.debian.org/debian/ wheezy/main librg-utils-perl all 1.0.43-1 [159 kB] Get:893 http://mirror.bm.debian.org/debian/ wheezy/main libset-scalar-perl all 1.25-1 [36.6 kB] Get:894 http://mirror.bm.debian.org/debian/ wheezy/main lynx-cur amd64 2.8.8dev.12-2 [2249 kB] Get:895 http://mirror.bm.debian.org/debian/ wheezy/main lynx all 2.8.8dev.12-2 [223 kB] Get:896 http://mirror.bm.debian.org/debian/ wheezy/main med-tasks all 1.13.2 [12.0 kB] Get:897 http://mirror.bm.debian.org/debian/ wheezy/main med-config all 1.13.2 [11.8 kB] Get:898 http://mirror.bm.debian.org/debian/ wheezy/main med-bio all 1.13.2 [20.5 kB] Get:899 http://mirror.bm.debian.org/debian/ wheezy/main neobio all 0.0.20030929-1 [448 kB] Get:900 http://mirror.bm.debian.org/debian/ wheezy/main openmpi-checkpoint amd64 1.4.5-1 [96.8 kB] Get:901 http://mirror.bm.debian.org/debian/ wheezy/main populations amd64 1.2.33+svn0120106-2.1 [210 kB] Get:902 http://mirror.bm.debian.org/debian/ wheezy/main pp-popularity-contest amd64 1.0.5-1 [36.8 kB] Get:903 http://mirror.bm.debian.org/debian/ wheezy/main profnet-bval amd64 1.0.21-1+wheezy1 [48.2 kB] Get:904 http://mirror.bm.debian.org/debian/ wheezy/main profnet-chop amd64 1.0.21-1+wheezy1 [56.7 kB] Get:905 http://mirror.bm.debian.org/debian/ wheezy/main profnet-con amd64 1.0.21-1+wheezy1 [56.0 kB] Get:906 http://mirror.bm.debian.org/debian/ wheezy/main profnet-isis amd64 1.0.21-1+wheezy1 [47.5 kB] Get:907 http://mirror.bm.debian.org/debian/ wheezy/main profnet-md amd64 1.0.21-1+wheezy1 [47.4 kB] Get:908 http://mirror.bm.debian.org/debian/ wheezy/main profnet-norsnet amd64 1.0.21-1+wheezy1 [47.3 kB] Get:909 http://mirror.bm.debian.org/debian/ wheezy/main profnet-prof amd64 1.0.21-1+wheezy1 [56.7 kB] Get:910 http://mirror.bm.debian.org/debian/ wheezy/main profnet-snapfun amd64 1.0.21-1+wheezy1 [54.0 kB] Get:911 http://mirror.bm.debian.org/debian/ wheezy/main profphd-net amd64 1.0.21-1+wheezy1 [159 kB] Get:912 http://mirror.bm.debian.org/debian/ wheezy/main profphd all 1.0.39-1 [6389 kB] Get:913 http://mirror.bm.debian.org/debian/ wheezy/main proftmb amd64 1.1.10-1 [448 kB] Get:914 http://mirror.bm.debian.org/debian/ wheezy/main pynast all 1.1-3 [42.2 kB] Get:915 http://mirror.bm.debian.org/debian/ wheezy/main python-cogent amd64 1.5.1-2 [1898 kB] Get:916 http://mirror.bm.debian.org/debian/ wheezy/main qiime amd64 1.4.0-2 [851 kB] Get:917 http://mirror.bm.debian.org/debian/ wheezy/main reprof all 1.0.1-1 [18.6 kB] Get:918 http://mirror.bm.debian.org/debian/ wheezy/main science-tasks all 1.0 [13.1 kB] Get:919 http://mirror.bm.debian.org/debian/ wheezy/main science-config all 1.0 [9204 B] Get:920 http://mirror.bm.debian.org/debian/ wheezy/main science-biology all 1.0 [7630 B] Get:921 http://mirror.bm.debian.org/debian/ wheezy/main ttf-liberation all 1.07.2-6 [9284 B] Get:922 http://mirror.bm.debian.org/debian/ wheezy/main vcftools amd64 0.1.9-1 [353 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 703 MB in 42s (16.7 MB/s) Selecting previously unselected package iproute. (Reading database ... 6657 files and directories currently installed.) Unpacking iproute (from .../iproute_20120521-3+b3_amd64.deb) ... Selecting previously unselected package ifupdown. Unpacking ifupdown (from .../ifupdown_0.7.8_amd64.deb) ... Selecting previously unselected package libgdbm3:amd64. Unpacking libgdbm3:amd64 (from .../libgdbm3_1.8.3-11_amd64.deb) ... Selecting previously unselected package libncursesw5:amd64. Unpacking libncursesw5:amd64 (from .../libncursesw5_5.9-10_amd64.deb) ... Selecting previously unselected package libpipeline1:amd64. Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libprocps0:amd64. Unpacking libprocps0:amd64 (from .../libprocps0_1%3a3.3.3-3_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package tasksel-data. 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Selecting previously unselected package libgssapi-krb5-2:amd64. Unpacking libgssapi-krb5-2:amd64 (from .../libgssapi-krb5-2_1.10.1+dfsg-5+deb7u7_amd64.deb) ... Selecting previously unselected package libidn11:amd64. Unpacking libidn11:amd64 (from .../libidn11_1.25-2_amd64.deb) ... Selecting previously unselected package libsasl2-2:amd64. Unpacking libsasl2-2:amd64 (from .../libsasl2-2_2.1.25.dfsg1-6+deb7u1_amd64.deb) ... Selecting previously unselected package libldap-2.4-2:amd64. Unpacking libldap-2.4-2:amd64 (from .../libldap-2.4-2_2.4.31-2+deb7u2_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-2+deb7u8_amd64.deb) ... Selecting previously unselected package libpcre3:amd64. Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.30-5_amd64.deb) ... Selecting previously unselected package libsqlite3-0:amd64. Unpacking libsqlite3-0:amd64 (from .../libsqlite3-0_3.7.13-1+deb7u2_amd64.deb) ... 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Unpacking libxcb1:amd64 (from .../libxcb1_1.8.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1+deb7u2_all.deb) ... Selecting previously unselected package libx11-6:amd64. Unpacking libx11-6:amd64 (from .../libx11-6_2%3a1.5.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libx11-xcb1:amd64. Unpacking libx11-xcb1:amd64 (from .../libx11-xcb1_2%3a1.5.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libxcb-glx0:amd64. Unpacking libxcb-glx0:amd64 (from .../libxcb-glx0_1.8.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libxfixes3:amd64. Unpacking libxfixes3:amd64 (from .../libxfixes3_1%3a5.0-4+deb7u1_amd64.deb) ... Selecting previously unselected package libxdamage1:amd64. Unpacking libxdamage1:amd64 (from .../libxdamage1_1%3a1.1.3-2_amd64.deb) ... Selecting previously unselected package libxext6:amd64. Unpacking libxext6:amd64 (from .../libxext6_2%3a1.3.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libxxf86vm1:amd64. Unpacking libxxf86vm1:amd64 (from .../libxxf86vm1_1%3a1.1.2-1+deb7u1_amd64.deb) ... Selecting previously unselected package libgl1-mesa-glx:amd64. Unpacking libgl1-mesa-glx:amd64 (from .../libgl1-mesa-glx_8.0.5-4+deb7u2_amd64.deb) ... Selecting previously unselected package libxi6:amd64. Unpacking libxi6:amd64 (from .../libxi6_2%3a1.6.1-1+deb7u1_amd64.deb) ... Selecting previously unselected package freeglut3:amd64. Unpacking freeglut3:amd64 (from .../freeglut3_2.6.0-4_amd64.deb) ... Selecting previously unselected package libsigsegv2. Unpacking libsigsegv2 (from .../libsigsegv2_2.9-4_amd64.deb) ... Setting up libsigsegv2 (2.9-4) ... Selecting previously unselected package gawk. (Reading database ... 7608 files and directories currently installed.) Unpacking gawk (from .../gawk_1%3a4.0.1+dfsg-2.1_amd64.deb) ... Selecting previously unselected package imagemagick-common. Unpacking imagemagick-common (from .../imagemagick-common_8%3a6.7.7.10-5+deb7u4_all.deb) ... Selecting previously unselected package last-align. Unpacking last-align (from .../last-align_199-1_amd64.deb) ... Selecting previously unselected package libfreetype6:amd64. Unpacking libfreetype6:amd64 (from .../libfreetype6_2.4.9-1.1+deb7u3_amd64.deb) ... Selecting previously unselected package x11-common. Unpacking x11-common (from .../x11-common_1%3a7.7+3~deb7u1_all.deb) ... Selecting previously unselected package libice6:amd64. Unpacking libice6:amd64 (from .../libice6_2%3a1.0.8-2_amd64.deb) ... Selecting previously unselected package libsm6:amd64. Unpacking libsm6:amd64 (from .../libsm6_2%3a1.2.1-2_amd64.deb) ... Selecting previously unselected package libxp6:amd64. Unpacking libxp6:amd64 (from .../libxp6_1%3a1.0.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libxt6:amd64. Unpacking libxt6:amd64 (from .../libxt6_1%3a1.1.3-1+deb7u1_amd64.deb) ... Selecting previously unselected package lesstif2:amd64. Unpacking lesstif2:amd64 (from .../lesstif2_1%3a0.95.2-1.1_amd64.deb) ... Selecting previously unselected package libaio1:amd64. Unpacking libaio1:amd64 (from .../libaio1_0.3.109-3_amd64.deb) ... Selecting previously unselected package libart-2.0-2:amd64. Unpacking libart-2.0-2:amd64 (from .../libart-2.0-2_2.3.21-2_amd64.deb) ... Selecting previously unselected package libasound2:amd64. Unpacking libasound2:amd64 (from .../libasound2_1.0.25-4_amd64.deb) ... Selecting previously unselected package libasyncns0:amd64. Unpacking libasyncns0:amd64 (from .../libasyncns0_0.8-4_amd64.deb) ... Selecting previously unselected package libffi5:amd64. Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Selecting previously unselected package libglib2.0-0:amd64. Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.33.12+really2.32.4-5_amd64.deb) ... Selecting previously unselected package libatk1.0-data. Unpacking libatk1.0-data (from .../libatk1.0-data_2.4.0-2_all.deb) ... Selecting previously unselected package libatk1.0-0:amd64. Unpacking libatk1.0-0:amd64 (from .../libatk1.0-0_2.4.0-2_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-3_all.deb) ... Selecting previously unselected package fonts-freefont-ttf. Unpacking fonts-freefont-ttf (from .../fonts-freefont-ttf_20120503-1_all.deb) ... Selecting previously unselected package ttf-freefont. Unpacking ttf-freefont (from .../ttf-freefont_20120503-1_all.deb) ... Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ... Selecting previously unselected package libfontconfig1:amd64. Unpacking libfontconfig1:amd64 (from .../libfontconfig1_2.9.0-7.1_amd64.deb) ... Selecting previously unselected package libpixman-1-0:amd64. Unpacking libpixman-1-0:amd64 (from .../libpixman-1-0_0.26.0-4+deb7u2_amd64.deb) ... Selecting previously unselected package libpng12-0:amd64. Unpacking libpng12-0:amd64 (from .../libpng12-0_1.2.49-1+deb7u2_amd64.deb) ... Selecting previously unselected package libxcb-render0:amd64. Unpacking libxcb-render0:amd64 (from .../libxcb-render0_1.8.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libxcb-shm0:amd64. Unpacking libxcb-shm0:amd64 (from .../libxcb-shm0_1.8.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libxrender1:amd64. Unpacking libxrender1:amd64 (from .../libxrender1_1%3a0.9.7-1+deb7u2_amd64.deb) ... Selecting previously unselected package libcairo2:amd64. Unpacking libcairo2:amd64 (from .../libcairo2_1.12.2-3_amd64.deb) ... Selecting previously unselected package libjpeg8:amd64. 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Setting up libmagickwand5:amd64 (8:6.7.7.10-5+deb7u4) ... Setting up libopenexr6 (1.6.1-6) ... Setting up librsvg2-2:amd64 (2.36.1-2+deb7u1) ... Setting up libwmf0.2-7:amd64 (0.2.8.4-10.3+deb7u1) ... Setting up libmagickcore5-extra:amd64 (8:6.7.7.10-5+deb7u4) ... Setting up libmng1:amd64 (1.0.10-3) ... Setting up libmpfr4:amd64 (3.1.0-5) ... Setting up libmysqlclient18:amd64 (5.5.47-0+deb7u1) ... Setting up ncbi-data (6.1.20120620-2) ... Setting up libncbi6:amd64 (6.1.20120620-2) ... Setting up libnspr4:amd64 (2:4.9.2-1+deb7u3) ... Setting up libnss3:amd64 (2:3.14.5-1+deb7u5) ... Setting up libobjc4:amd64 (4.7.2-5) ... Setting up libpaper1:amd64 (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libpcrecpp0:amd64 (1:8.30-5) ... Setting up libpcsclite1:amd64 (1.8.4-1+deb7u1) ... Setting up libjson0:amd64 (0.10-1.2) ... Setting up libvorbis0a:amd64 (1.3.2-1.3) ... Setting up libvorbisenc2:amd64 (1.3.2-1.3) ... Setting up libsndfile1:amd64 (1.0.25-5) ... 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Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libxv1:amd64 (2:1.0.7-1+deb7u1) ... Setting up libxxf86dga1:amd64 (2:1.1.3-2+deb7u1) ... Setting up libyaml-0-2:amd64 (0.1.4-2+deb7u5) ... Setting up libclass-isa-perl (0.36-3) ... Setting up mafft (6.864-1) ... Setting up psmisc (22.19-1+deb7u1) ... Setting up mysql-server-core-5.5 (5.5.47-0+deb7u1) ... Setting up openssl (1.0.1e-2+deb7u20) ... Setting up ca-certificates (20130119+deb7u1) ... Setting up java-common (0.47) ... Setting up tzdata-java (2016d-0+deb7u1) ... Setting up poppler-data (0.4.5-10) ... Setting up ttf-dejavu-extra (2.33-3) ... Setting up ttf-dejavu (2.33-3) ... Setting up velvet (1.2.03~nozlibcopy-1) ... Setting up wise (2.4.1-10) ... Setting up libflite1:amd64 (1.4-release-6) ... Setting up libmpc2:amd64 (0.9-4) ... Setting up libsystemd-login0:amd64 (44-11+deb7u4) ... Setting up dmidecode (2.11-9) ... Setting up groff-base (1.21-9) ... Setting up libboost-iostreams1.49.0 (1.49.0-3.2) ... Setting up manpages (3.44-1) ... Setting up netbase (5.0) ... Setting up procps (1:3.3.3-3) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode invoke-rc.d: policy-rc.d denied execution of start. Setting up bzip2 (1.0.6-4) ... Setting up file (5.11-2+deb7u8) ... Setting up krb5-locales (1.10.1+dfsg-5+deb7u7) ... Setting up mime-support (3.52-1+deb7u1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up patch (2.6.1-3) ... Setting up python2.7-minimal (2.7.3-6+deb7u2) ... update-binfmts: warning: python2.7 already enabled in kernel. Setting up python2.7 (2.7.3-6+deb7u2) ... Setting up python-minimal (2.7.3-4+deb7u1) ... Setting up python (2.7.3-4+deb7u1) ... Setting up python-support (1.0.15) ... Setting up gnustep-common (2.6.2-2) ... Setting up libao-common (1.1.0-2) ... Setting up libao4 (1.1.0-2) ... Setting up libaspell15 (0.60.7~20110707-1) ... Setting up libgif4 (4.1.6-10+deb7u1) ... Setting up libgsl0ldbl (1.15+dfsg.2-2) ... Setting up libcommons-pool-java (1.5.6-1) ... Setting up libcommons-collections-java (2.1.1-10) ... Setting up libcommons-dbcp-java (1.4-3) ... Setting up libservlet2.5-java (6.0.45+dfsg-1~deb7u1) ... Setting up libhsqldb-java (1.8.0.10+dfsg-0+deb7u1) ... Setting up libapache-pom-java (10-2) ... Setting up libcommons-parent-java (22-2) ... Setting up libcommons-lang-java (2.6-3) ... Setting up libcommons-cli-java (1.2-3) ... Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libtamuanova-0.2 (0.2-2) ... Setting up libibverbs1 (1.1.6-1) ... Setting up libnuma1 (2.0.8~rc4-1) ... Setting up libtorque2 (2.4.16+dfsg-1+deb7u4) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up fftw2 (2.1.5-1) ... Setting up libhdf4-0-alt (4.2r4-13) ... Setting up libqhull5 (2009.1-3) ... Setting up libcsiro0 (5.9.9-5) ... Setting up libqsastime0 (5.9.9-5) ... Setting up libplplot11 (5.9.9-5) ... Setting up proj-data (4.7.0-2) ... Setting up libproj0 (4.7.0-2) ... Setting up amap-align (2.2-3) ... Setting up libxml-commons-resolver1.1-java (1.2-7) ... Setting up libxml-commons-external-java (1.4.01-2) ... Setting up libxerces2-java (2.11.0-6) ... Setting up libapr1 (1.4.6-3+deb7u1) ... Setting up libaprutil1 (1.4.1-3) ... Setting up libaprutil1-dbd-sqlite3 (1.4.1-3) ... Setting up libaprutil1-ldap (1.4.1-3) ... Setting up apache2.2-bin (2.2.22-13+deb7u6) ... Setting up apache2-utils (2.2.22-13+deb7u6) ... Setting up libmaloc1 (0.2-2.3) ... Setting up apbs (1.3.0-2) ... Setting up dictionaries-common (1.12.11) ... Setting up autodock (4.2.3-2) ... ---------------------------------------------------------------------- ______ / \ / \ / \ \ /\ / \ / \ / \/ /\ \/ / \ /____\ AutoDock and AutoGrid are free software, distributed under the terms of the GNU General Public License 2 or later. This allows us to share the code and to be open for improvement from the whole scientific community. The development of the AutoDock suite is entirely funded by research grants. For that reason, we ask you to register at the AutoDock Registration page http://autodock.scripps.edu/downloads/autodock-registration in order to keep track of number of unique downloads, which we use to support the grant applications. Installing the Debian popularity-contest package is also encouraged. Thank you, and happy docking! The AutoDock Development Team If you plan to use AutoDock for commercial purposes we encourage donations to the Olson laboratory to help support further development of the AutoDock 4 suite of programs. Donation information provided on the download page. ---------------------------------------------------------------------- Setting up autogrid (4.2.3-2) ... Setting up autotools-dev (20120608.1) ... Setting up libboost-date-time1.49.0 (1.49.0-3.2) ... Setting up libboost-regex1.49.0 (1.49.0-3.2) ... Setting up libboost-system1.49.0 (1.49.0-3.2) ... Setting up libboost-thread1.49.0 (1.49.0-3.2) ... Setting up libpython2.7 (2.7.3-6+deb7u2) ... Setting up libball1.4-data (1.4.1+20111206-4) ... Setting up libball1.4 (1.4.1+20111206-4) ... Setting up libballview1.4 (1.4.1+20111206-4) ... Setting up python-sip (4.13.3-2) ... Setting up python-ball (1.4.1+20111206-4) ... Setting up python-ballview (1.4.1+20111206-4) ... Setting up ballview (1.4.1+20111206-4) ... Setting up binfmt-support (2.0.12) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up binutils (2.22-8+deb7u2) ... Setting up ant-contrib (1.0~b3+svn177-5) ... Setting up libhamcrest-java (1.2-2) ... Setting up libcommons-codec-java (1.6-1) ... Setting up libcommons-logging-java (1.1.1-9) ... Setting up libcommons-httpclient-java (3.1-10.2+deb7u2) ... Setting up libcommons-net2-java (2.2-2) ... Setting up libgnujaf-java (1.1.1-8) ... Setting up libgnuinet-java (1.1.2-2) ... Setting up libgnumail-java (1.1.2-7) ... Setting up libjcommon-java (1.0.16-2) ... Setting up libwsdl4j-java (1.6.2-4) ... Setting up libcommons-discovery-java (0.5-3) ... Setting up libaxis-java (1.4-16.2+deb7u1) ... Setting up libjava-xmlbuilder-java (0.4-2) ... Setting up libjets3t-java (0.8.1+dfsg-1) ... Setting up libjgoodies-forms-java (1.3.0-2) ... Setting up libjsch-java (0.1.42-2) ... Setting up liblog4j1.2-java (1.2.16-3) ... Setting up libmysql-java (5.1.16-2) ... Setting up liboro-java (2.0.8a-8) ... Setting up libregexp-java (1.5-3) ... Setting up libjaxen-java (1.1.3-1) ... Setting up libjdom1-java (1.1.2+dfsg-2) ... Setting up libjaxme-java (0.5.2+dfsg-6) ... Setting up libxpp2-java (2.1.10-7) ... Setting up libxpp3-java (1.1.4c-2) ... Setting up libbackport-util-concurrent-java (3.1-3) ... Setting up libdom4j-java (1.6.1+dfsg.2-6) ... Setting up libxom-java (1.2.1-3) ... Setting up libsaxonb-java (9.1.0.8-1) ... Setting up blast2 (1:2.2.26.20120620-2) ... Setting up libcr0 (0.8.5-2) ... Setting up blcr-util (0.8.5-2) ... Setting up menu (2.1.46) ... Setting up tcl8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode Setting up tk8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode Setting up blt (2.4z-4.2) ... Setting up boxshade (3.3.1-7+wheezy1) ... Setting up libc-dev-bin (2.13-38+deb7u10) ... Setting up linux-libc-dev:amd64 (3.2.78-1) ... Setting up libc6-dev:amd64 (2.13-38+deb7u10) ... Setting up cpp-4.7 (4.7.2-5) ... Setting up cpp (4:4.7.2-1) ... Setting up gcc-4.7 (4.7.2-5) ... Setting up gcc (4:4.7.2-1) ... Setting up make (3.81-8.2) ... Setting up bwa (0.6.2-1) ... Setting up openmpi-common (1.4.5-1) ... Setting up openmpi-bin (1.4.5-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up mpi-default-bin (1.0.1) ... Setting up cdbs (0.4.115+deb7u1) ... Setting up clonalframe (1.2-3) ... Setting up libargtable2-0 (12-1) ... Setting up clustalo (1.1.0-1) ... Setting up clustalw (2.1+lgpl-2) ... Setting up clustalx (2.1+lgpl-2) ... Setting up curl (7.26.0-1+wheezy13) ... Setting up dbus (1.6.8-1+deb7u6) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up dialign (2.2.1-5) ... Setting up dialign-tx-data (1.0.2-2) ... Setting up dialign-tx (1.0.2-2) ... Setting up libboost-program-options1.49.0 (1.49.0-3.2) ... Setting up dssp (2.0.4-2) ... Setting up libhpdf-2.2.1 (2.2.1-1) ... Setting up libpq5 (9.1.21-0+deb7u1) ... Setting up emboss-lib (6.4.0-2) ... Setting up embassy-domainatrix (0.1.0+20110714-1) ... Setting up embassy-domalign (0.1.0+20110714-1) ... Setting up embassy-domsearch (1:0.1.0+20110714-1) ... Setting up emboss-data (6.4.0-2) ... Setting up emboss (6.4.0-2) ... Setting up exonerate (2.2.0-6) ... Setting up fakeroot (1.18.4-2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up fastdnaml (1.2.2-10) ... Setting up fastjar (2:0.98-3) ... Setting up fastlink (4.1P-fix95-3) ... Setting up libgtextutils0 (0.6.2-1) ... Setting up jarwrapper (0.43) ... Setting up junit (3.8.2-8) ... Setting up libnb-org-openide-util-lookup-java (7.0.1+dfsg1-5) ... Setting up libnb-org-openide-util-java (7.0.1+dfsg1-5) ... Setting up libfreehep-util-java (2.0.2-5) ... Setting up libfreehep-io-java (2.0.2-4) ... Setting up libtablelayout-java (20090826-2) ... Setting up libgcj-common (1:4.6.3-8) ... Setting up libjam-java (0.0.r297-1) ... Setting up libjebl2-java (0.0.r6-1) ... Setting up filo (1.1+2011020401.2) ... Setting up fonts-droid (20111207+git-1) ... Setting up fonts-liberation (1.07.2-6) ... Setting up fonts-lyx (2.0.3-3) ... Setting up libgtkglext1 (1.2.0-2) ... Setting up gamgi (0.15.8-1) ... Setting up garlic (1.6-1.1) ... Setting up sqlite3 (3.7.13-1+deb7u2) ... Setting up libjs-prototype (1.7.0-2) ... Setting up libjs-scriptaculous (1.9.0-2) ... Setting up gdpc (2.2.5-2) ... Setting up libsqlite0 (2.8.17-7) ... Setting up libtinyxml2.6.2 (2.6.2-1) ... Setting up gentle (1.9+cvs20100605+dfsg1-1) ... Setting up gff2ps (0.98d-4) ... Setting up gfortran-4.7 (4.7.2-5) ... Setting up gfortran (4:4.7.2-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode Setting up liblapack3 (3.4.1+dfsg-1+deb70u1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libmopac7-1gf (1.15-5) ... Setting up libsc-data (2.3.1-14) ... Setting up libint1 (1.1.4-1) ... Setting up libsc7 (2.3.1-14) ... Setting up libghemical-data (3.0.0-2) ... Setting up libghemical5 (3.0.0-2) ... Setting up libglade2-0 (1:2.6.4-1) ... Setting up liboglappth2 (1.0.0-2) ... Setting up libopenbabel4 (2.3.1+dfsg-4) ... Setting up mpqc (2.3.1-14) ... Setting up ghemical (3.0.0-1) ... Setting up libijs-0.35 (0.35-8) ... Setting up libjbig2dec0 (0.11+20120125-1) ... Setting up libgs9-common (9.05~dfsg-6.3+deb7u2) ... Setting up libgs9 (9.05~dfsg-6.3+deb7u2) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Setting up ghostscript (9.05~dfsg-6.3+deb7u2) ... Setting up libgirepository-1.0-1 (1.32.1-1) ... Setting up gir1.2-glib-2.0 (1.32.1-1) ... Setting up glam2 (1064-1) ... Setting up gnuplot-nox (4.6.0-8) ... Setting up gnuplot (4.6.0-8) ... Setting up libcdt4 (2.26.3-14+deb7u2) ... Setting up libcgraph5 (2.26.3-14+deb7u2) ... Setting up libgraph4 (2.26.3-14+deb7u2) ... Setting up libpathplan4 (2.26.3-14+deb7u2) ... Setting up libxdot4 (2.26.3-14+deb7u2) ... Setting up libgvc5 (2.26.3-14+deb7u2) ... Setting up libgvpr1 (2.26.3-14+deb7u2) ... Setting up graphviz (2.26.3-14+deb7u2) ... Setting up groff (1.21-9) ... Setting up heirloom-mailx (12.5-2+deb7u1) ... update-alternatives: using /usr/bin/heirloom-mailx to provide /usr/bin/mailx (mailx) in auto mode Setting up hicolor-icon-theme (0.12-1) ... Setting up hmmer (3.0-4) ... Setting up imagemagick (8:6.7.7.10-5+deb7u4) ... update-alternatives: using /usr/bin/compare.im6 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/animate.im6 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/convert.im6 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/composite.im6 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/conjure.im6 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/import.im6 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/identify.im6 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/stream.im6 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/display.im6 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/montage.im6 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/mogrify.im6 to provide /usr/bin/mogrify (mogrify) in auto mode Setting up infernal (1.0.2-2) ... Setting up unzip (6.0-8+deb7u5) ... Setting up java-wrappers (0.1.25) ... Setting up libjmol-java (12.2.32+dfsg2-1) ... Setting up icedtea-netx-common (1.4-3~deb7u2) ... Setting up libcastor-core-java (1.3.2-1) ... Setting up libcastor-xml-java (1.3.2-1) ... Setting up libhttpcore-java (4.1.4-2.1) ... Setting up libhttpclient-java (4.1.1-2+deb7u1) ... Setting up libjaba-client-java (0+dfsg-1) ... Setting up libjswingreader-java (0.3-1) ... Setting up libmiglayout-java (3.7.4-2) ... Setting up libvamsas-client-java (0.2~git2011.10.17+1b42648-1) ... Setting up wwwconfig-common (0.2.2) ... Setting up javascript-common (7) ... Setting up jellyfish (1.1.5-1) ... Setting up jmol (12.2.32+dfsg2-1) ... Setting up kalign (1:2.03+20110620-2) ... Setting up laptop-detect (0.13.7) ... Setting up libfann2 (2.1.0~beta~dfsg-8) ... Setting up libperl5.14 (5.14.2-21+deb7u3) ... Setting up libstaden-read1 (1.12.4-1) ... Setting up libblas-dev (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libboost-filesystem1.49.0 (1.49.0-3.2) ... Setting up libbz2-dev:amd64 (1.0.6-4) ... Setting up libexiv2-12 (0.23-1) ... Setting up libftgl2 (2.1.3~rc5-4) ... Setting up libg20 (0.72-2.1) ... Setting up libgeronimo-jta-1.1-spec-java (1.1.1-2) ... Setting up libgl1-mesa-dri:amd64 (8.0.5-4+deb7u2) ... Setting up libglib2.0-data (2.33.12+really2.32.4-5) ... Setting up libgtk2.0-bin (2.24.10-2) ... Setting up xorg-sgml-doctools (1:1.10-1) ... Setting up x11proto-core-dev (7.0.23-1) ... Setting up libice-dev:amd64 (2:1.0.8-2) ... Setting up libjpeg8-dev:amd64 (8d-1+deb7u1) ... Setting up libjs-jquery (1.7.2+dfsg-1) ... Setting up libjs-underscore (1.1.6-1+deb7u1) ... Setting up liblapack-dev (3.4.1+dfsg-1+deb70u1) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libtinfo-dev:amd64 (5.9-10) ... Setting up libncurses5-dev (5.9-10) ... Setting up libnetpbm10 (2:10.0-15+b1) ... Setting up libossp-uuid16 (1.6.2-1.3) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up libpcre3-dev (1:8.30-5) ... Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13) ... Setting up libpng12-dev (1.2.49-1+deb7u2) ... Setting up libpthread-stubs0:amd64 (0.3-3) ... Setting up libpthread-stubs0-dev:amd64 (0.3-3) ... Setting up libreadline6-dev:amd64 (6.2+dfsg-0.1) ... Setting up libreadline-dev:amd64 (6.2+dfsg-0.1) ... Setting up librsvg2-common:amd64 (2.36.1-2+deb7u1) ... Setting up libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Setting up libsam-java (1.46-1) ... Setting up libsasl2-modules:amd64 (2.1.25.dfsg1-6+deb7u1) ... Setting up libsm-dev:amd64 (2:1.2.1-2) ... Setting up libsprng2 (2.0a-8) ... Setting up libsquizz (0.99a-2) ... Setting up libtcmalloc-minimal4 (2.0-2) ... Setting up libutempter0 (1.1.5-4) ... Creating utempter group... Setting up libvte-common (1:0.28.2-5) ... Setting up libvte9 (1:0.28.2-5) ... Setting up libxau-dev:amd64 (1:1.0.7-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.1-1) ... Setting up x11proto-input-dev (2.2-1) ... Setting up x11proto-kb-dev (1.0.6-2) ... Setting up xtrans-dev (1.2.7-1) ... Setting up libxcb1-dev:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-dev:amd64 (2:1.5.0-1+deb7u2) ... Setting up libx11-doc (2:1.5.0-1+deb7u2) ... Setting up libxt-dev:amd64 (1:1.1.3-1+deb7u1) ... Setting up loki (2.4.7.4-4) ... Setting up manpages-dev (3.44-1) ... Setting up maq (0.7.1-5) ... Setting up maqview (0.2.5-4) ... Setting up massxpert-data (3.2.3-1) ... Setting up massxpert (3.2.3-1) ... Setting up melting (4.3c-2) ... Setting up mira-assembler (3.4.0.1-3) ... Setting up mothur (1.24.1-1) ... Setting up libhmsbeagle1 (1.0-6) ... Setting up mrbayes (3.2.1+dfsg-1) ... Setting up muscle (1:3.8.31-1) ... Setting up mustang (3.2.1-3) ... Setting up ncbi-epcr (2.3.12-1-1) ... Setting up ncbi-tools-bin (6.1.20120620-2) ... Setting up ncbi-tools-x11 (6.1.20120620-2) ... update-alternatives: using /usr/bin/Cn3D-3.0 to provide /usr/bin/Cn3D (Cn3D) in auto mode Setting up ncoils (2002-3) ... Setting up netpbm (2:10.0-15+b1) ... Setting up njplot (2.4-1) ... Setting up phyml (2:20110919-1) ... Setting up python-tk (2.7.3-1) ... Setting up plasmidomics (0.2.0-2) ... Setting up plink (1.07-3) ... Setting up poa (2.0+20060928-3) ... Setting up primer3 (2.2.3-1) ... Setting up probalign (1.4-2) ... Setting up probcons (1.12-9) ... Setting up proda (1.0-8) ... Setting up psutils (1.17.dfsg-1) ... Setting up python-pmw (1.3.2-6) ... Setting up pymol (1.5.0.1-2) ... Setting up python-cairo (1.8.8-1+b2) ... Setting up python-dateutil (1.5+dfsg-0.1) ... Setting up python-egenix-mxtools (3.2.1-1.1) ... Setting up python-egenix-mxdatetime (3.2.1-1.1) ... Setting up python-gi (3.2.2-2) ... Setting up python-numpy (1:1.6.2-1.2) ... Setting up python-gobject-2 (2.28.6-10) ... Setting up python-gtk2 (2.24.0-3+b1) ... Setting up python-glade2 (2.24.0-3+b1) ... Setting up python-gobject (3.2.2-2) ... Setting up python-imaging (1.1.7-4+deb7u2) ... Setting up python-lxml (2.3.2-1+deb7u1) ... Setting up python-markupsafe (0.15-1) ... Setting up python-mako (0.7.0-1.1) ... Setting up python-matplotlib-data (1.1.1~rc2-1) ... Setting up python-pyparsing (1.5.6+dfsg1-2) ... Setting up python-tz (2012c-1) ... Setting up python-matplotlib (1.1.1~rc2-1) ... Setting up python-mysqldb (1.2.3-2) ... Setting up python-pysqlite2 (2.6.3-3) ... Setting up python-sqlalchemy (0.7.8-1) ... Setting up python-sqlalchemy-ext (0.7.8-1) ... Setting up zip (3.0-6) ... Setting up xdg-utils (1.1.0~rc1+git20111210-6+deb7u3) ... Setting up r-base-core (2.15.1-4) ... Setting R_PAPERSIZE_USER default to 'a4' Creating config file /etc/R/Renviron with new version Setting up r-cran-dbi (0.2-5-2) ... Setting up r-cran-rsqlite (0.11.1-1) ... Setting up r-cran-plyr (1.7.1-1) ... Setting up r-cran-stringr (0.6.0-1) ... Setting up r-cran-lattice (0.20-6-1) ... Setting up r-cran-reshape2 (1.2.1-1) ... Setting up r-cran-reshape (0.8.4-1) ... Setting up r-cran-proto (0.3-9.2-1) ... Setting up r-cran-mass (7.3-19-1) ... Setting up r-cran-rcolorbrewer (1.0-5-1) ... Setting up r-cran-digest (0.5.2-1) ... Setting up r-cran-colorspace (1.0.1-1+b1) ... Setting up r-cran-ggplot2 (0.8.9-1) ... Setting up r-bioc-cummerbund (1.2.0-1) ... Setting up r-bioc-hilbertvis (1.14.0-1) ... Setting up r-cran-boot (1.3-5-1) ... Setting up r-cran-class (7.3-4-1) ... Setting up r-cran-cluster (1.14.2-1) ... Setting up r-cran-codetools (0.2-8-1) ... Setting up r-cran-foreign (0.8.50-1) ... Setting up r-cran-g.data (2.0-4) ... Setting up r-cran-genabel (1.7-0-3) ... Setting up r-cran-kernsmooth (2.23-8-1) ... Setting up r-cran-matrix (1.0-6-1) ... Setting up r-cran-nlme (3.1.104-1) ... Setting up r-cran-mgcv (1.7-13-1) ... Setting up r-cran-multicore (0.1-7-1) ... Setting up r-cran-nnet (7.3-4-1) ... Setting up r-cran-qtl (1.23-16-1) ... Setting up r-cran-survival (2.36-14-1) ... Setting up r-cran-rpart (3.1.54-1) ... Setting up r-cran-spatial (7.3-4-1) ... Setting up r-doc-html (2.15.1-4) ... Setting up r-other-bio3d (1.1-4-1) ... Setting up r-other-mott-happy (2.1-7) ... Setting up r-recommended (2.15.1-4) ... Setting up libcbf0 (0.7.9.1-3) ... Setting up libcvector2 (1.0.3-1) ... Setting up rasmol (2.7.5.2-1) ... update-alternatives: using /usr/bin/rasmol-gtk to provide /usr/bin/rasmol (rasmol) in auto mode Setting up raster3d (3.0-2-4) ... Setting up raxml (7.2.8-2) ... Setting up readseq (1-9) ... Setting up rnahybrid (2.1.1-1) ... Setting up ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... update-alternatives: using /usr/bin/gem1.9.1 to provide /usr/bin/gem (gem) in auto mode update-alternatives: using /usr/bin/ruby1.9.1 to provide /usr/bin/ruby (ruby) in auto mode Setting up ruby (1:1.9.3) ... Setting up samtools (0.1.18-1) ... Setting up sibsim4 (0.20-1) ... Setting up sigma-align (1.1.3-3) ... Setting up sim4 (0.0.20030921-3) ... Setting up squizz (0.99a-2) ... Setting up sra-toolkit-libs0 (2.1.7a-1) ... Setting up sra-toolkit (2.1.7a-1) ... Setting up ssl-cert (1.0.32+deb7u1) ... Setting up staden-io-lib-utils (1.12.4-1) ... Setting up t-coffee (9.02.r1228-2) ... Setting up tabix (0.2.6-1) ... Setting up tcpd (7.6.q-24) ... Setting up theseus (1.6.2-2) ... Setting up tigr-glimmer (3.02-2) ... Setting up tm-align (20120507-1) ... Setting up transtermhp (2.09-1) ... Setting up tree-puzzle (5.2-7) ... Setting up tree-puzzle-doc (5.2-7) ... Setting up treeviewx (0.5.1+20100823-1) ... Setting up liblensfun-data (0.2.5-2) ... Setting up liblensfun0 (0.2.5-2) ... Setting up ufraw-batch (0.18-2) ... Setting up x11-utils (7.7~1) ... Setting up x11-xserver-utils (7.7~3) ... Setting up xbitmaps (1.1.1-1) ... Setting up xterm (278-4) ... update-alternatives: using /usr/bin/xterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode update-alternatives: using /usr/bin/uxterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode update-alternatives: using /usr/bin/lxterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode Setting up acedb-other (4.9.39+dfsg.01-5) ... Setting up acedb-other-belvu (4.9.39+dfsg.01-5) ... Setting up acedb-other-dotter (4.9.39+dfsg.01-5) ... Setting up ampliconnoise (1.25-1) ... Setting up autodock-vina (1.1.2-2+b1) ... Setting up python-gdata (2.0.17+dfsg-1) ... Setting up bauble (0.9.7-2) ... Setting up bowtie (0.12.7-3) ... Setting up bowtie2 (2.0.0-beta6-3) ... Setting up critterding (1.0-beta12.1-1.2) ... Setting up disulfinder-data (1.2.11-2) ... Setting up disulfinder (1.2.11-2+b1) ... Setting up dotur (1.53-2) ... Setting up fasttree (2.1.4-1) ... Setting up libffindex0 (0.9.6.1-1) ... Setting up ffindex (0.9.6.1-1) ... Setting up gromacs-data (4.5.5-2) ... Setting up gromacs (4.5.5-2) ... Setting up hhsuite-data (2.0.15-1) ... Setting up hhsuite (2.0.15-1) ... Setting up profphd-utils (1.0.9-1) ... Setting up lynx-cur (2.8.8dev.12-2) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx (2.8.8dev.12-2) ... Setting up openmpi-checkpoint (1.4.5-1) ... Setting up populations (1.2.33+svn0120106-2.1) ... Setting up profnet-bval (1.0.21-1+wheezy1) ... Setting up profnet-chop (1.0.21-1+wheezy1) ... Setting up profnet-con (1.0.21-1+wheezy1) ... Setting up profnet-isis (1.0.21-1+wheezy1) ... Setting up profnet-md (1.0.21-1+wheezy1) ... Setting up profnet-norsnet (1.0.21-1+wheezy1) ... Setting up profnet-prof (1.0.21-1+wheezy1) ... Setting up profnet-snapfun (1.0.21-1+wheezy1) ... Setting up profphd-net (1.0.21-1+wheezy1) ... Setting up proftmb (1.1.10-1) ... Setting up pynast (1.1-3) ... Setting up python-cogent (1.5.1-2) ... Setting up qiime (1.4.0-2) ... Setting up ttf-liberation (1.07.2-6) ... Processing triggers for menu ... Setting up blends-common (0.6.16.2) ... Setting up med-config (1.13.2) ... Adding group `med' (GID 155) ... Done. Setting up science-config (1.0) ... Adding group `science' (GID 156) ... Done. Processing triggers for dictionaries-common ... aspell-autobuildhash: processing: en [en-common] aspell-autobuildhash: processing: en [en-variant_0] aspell-autobuildhash: processing: en [en-variant_1] aspell-autobuildhash: processing: en [en-variant_2] aspell-autobuildhash: processing: en [en-w_accents-only] aspell-autobuildhash: processing: en [en-wo_accents-only] aspell-autobuildhash: processing: en [en_CA-variant_0] aspell-autobuildhash: processing: en [en_CA-variant_1] aspell-autobuildhash: processing: en [en_CA-w_accents-only] aspell-autobuildhash: processing: en [en_CA-wo_accents-only] aspell-autobuildhash: processing: en [en_GB-ise-w_accents-only] aspell-autobuildhash: processing: en [en_GB-ise-wo_accents-only] aspell-autobuildhash: processing: en [en_GB-ize-w_accents-only] aspell-autobuildhash: processing: en [en_GB-ize-wo_accents-only] aspell-autobuildhash: processing: en [en_GB-variant_0] aspell-autobuildhash: processing: en [en_GB-variant_1] aspell-autobuildhash: processing: en [en_US-w_accents-only] aspell-autobuildhash: processing: en [en_US-wo_accents-only] Setting up aspell (0.60.7~20110707-1) ... Processing triggers for dictionaries-common ... Setting up aspell-en (7.1-0-1) ... Processing triggers for dictionaries-common ... Setting up g++-4.7 (4.7.2-5) ... Setting up g++ (4:4.7.2-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up tasksel (3.14.1) ... Setting up libswitch-perl (2.16-2) ... Setting up perl-modules (5.14.2-21+deb7u3) ... Setting up openjdk-6-jre-headless:amd64 (6b38-1.13.10-1~deb7u1) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode update-binfmts: warning: found manually created entry for jar in /proc/sys/fs/binfmt_misc; leaving it alone Setting up default-jre-headless (1:1.6-47) ... Setting up openjdk-6-jre:amd64 (6b38-1.13.10-1~deb7u1) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up libbytecode-java (0.92.svn.20090106-1) ... Setting up libbiojava1.7-java (1:1.7.1-2) ... Setting up libbiojava-java (1:1.7.1-2) ... Setting up alien-hunter (1.7-1) ... Setting up ant (1.8.2-4) ... Setting up ant-optional (1.8.2-4) ... Setting up junit4 (4.10-3) ... Setting up libstdc++6-4.7-dev (4.7.2-5) ... Setting up libfreehep-swing-java (2.0.3-3) ... Setting up libfreehep-export-java (2.1.1-2) ... Setting up libfreehep-graphics2d-java (2.1.1-3) ... Setting up libfreehep-graphicsio-java (2.1.1-3) ... Setting up javahelp2 (2.0.05.ds1-6) ... Setting up libjas-plotter-java (2.2.6+dfsg1-2) ... Setting up libfreehep-graphicsio-tests-java (2.1.1+dfsg1-3) ... Setting up libfreehep-graphicsio-emf-java (2.1.1-emfplus+dfsg1-2) ... Setting up libfreehep-graphicsio-pdf-java (2.1.1+dfsg-1) ... Setting up libfreehep-graphicsio-ps-java (2.1.1-1) ... Setting up libfreehep-xml-java (2.1.2+dfsg1-3) ... Setting up libfreehep-graphicsio-svg-java (2.1.1-3) ... Setting up libfreehep-graphicsio-swf-java (2.1.1+dfsg-1) ... Setting up libbcmail-java (1.44+dfsg-3.1+deb7u1) ... Setting up libbcprov-java (1.44+dfsg-3.1+deb7u1) ... Setting up libbctsp-java (1.44+dfsg-3.1+deb7u1) ... Setting up libitext5-java (5.0.6+svn4804-1) ... Setting up figtree (1.3.1-1) ... Setting up libapache-mime4j-java (0.6.1-2) ... Setting up libhttpmime-java (4.1.1-2+deb7u1) ... Setting up openjdk-6-jdk:amd64 (6b38-1.13.10-1~deb7u1) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javah to provide /usr/bin/javah (javah) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode Setting up picard-tools (1.46-1) ... Setting up icedtea-6-jre-cacao:amd64 (6b38-1.13.10-1~deb7u1) ... Setting up icedtea-6-jre-jamvm:amd64 (6b38-1.13.10-1~deb7u1) ... Setting up icedtea-netx:amd64 (1.4-3~deb7u2) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/javaws to provide /usr/bin/javaws (javaws) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/itweb-settings to provide /usr/bin/itweb-settings (itweb-settings) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/javaws to provide /usr/bin/javaws (javaws) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings to provide /usr/bin/itweb-settings (itweb-settings) in auto mode Setting up med-tasks (1.13.2) ... Setting up med-bio (1.13.2) ... Setting up neobio (0.0.20030929-1) ... Setting up science-tasks (1.0) ... Setting up science-biology (1.0) ... Setting up tasksel-data (3.14.1) ... Setting up perl (5.14.2-21+deb7u3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libyaml-syck-perl (1.20-1) ... Setting up libdbi-perl (1.622-1+deb7u1) ... Setting up libdbd-mysql-perl (4.021-1+b1) ... Setting up mysql-client-5.5 (5.5.47-0+deb7u1) ... Setting up mysql-server-5.5 (5.5.47-0+deb7u1) ... Stopping MySQL database server: mysqld. Starting MySQL database server: mysqld .. Checking for tables which need an upgrade, are corrupt or were not closed cleanly.. Setting up ca-certificates-java (20121112+nmu2) ... Adding debian:ssl-cert-snakeoil.pem done. Setting up openjdk-6-jre-lib (6b38-1.13.10-1~deb7u1) ... Setting up sgml-base (1.26+nmu4) ... Setting up mummer (3.23~dfsg-2) ... Setting up abacas (1.3.1-1) ... Setting up xml-core (0.13+nmu2) ... Setting up libmath-tamuanova-perl (1.0.2-1) ... Setting up libterm-readkey-perl (2.30-4+b2) ... Setting up libopengl-perl (0.66+dfsg-1) ... Setting up pdl (1:2.4.11-4) ... Setting up libpdl-stats-perl (0.6.2-1) ... Setting up altree (1.2.1-1) ... Setting up apache2.2-common (2.2.22-13+deb7u6) ... Enabling site default. Enabling module alias. Enabling module autoindex. Enabling module dir. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module status. Enabling module auth_basic. Enabling module deflate. Enabling module authz_default. Enabling module authz_user. Enabling module authz_groupfile. Enabling module authn_file. Enabling module authz_host. Enabling module reqtimeout. Setting up apache2-mpm-worker (2.2.22-13+deb7u6) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up apache2 (2.2.22-13+deb7u6) ... Setting up mysql-server (5.5.47-0+deb7u1) ... Setting up biomaj (1.2.1-1) ... /var/lib/dpkg/info/biomaj.config: 17: [: =: unexpected operator Install database ERROR 1045 (28000): Access denied for user '-dbpwd'@'localhost' (using password: NO) Failed to run the SQL script on database Check your configuration and reexecute the script manually *************************************************************************************** Before running the migration, please check that database configuration is correctly set and that the database schema and user are correctly created. To upgrade the database, the script must be run with the following arguments: For a first install, all arguments are mandatory, for an upgrade, only some parameters are required. - First install: [ -dbuser DBUSER -dbpwd DBPASSWORD -db (mysql|hsql)] - From v1.1 : [ -admin LOGIN -adminpwd PASSWORD -adminemail ADMINEMAIL] To get the current version, execute: biomaj --version Setting up libio-string-perl (1.08-2) ... Setting up libdata-stag-perl (0.11-2) ... Setting up libbio-perl-perl (1.6.901-3) ... Setting up bioperl (1.6.901-3) ... Setting up libbio-perl-run-perl (1.6.9-1) ... Setting up bioperl-run (1.6.9-1) ... Setting up libtimedate-perl (1.2000-1) ... Setting up libdpkg-perl (1.16.18) ... Setting up dpkg-dev (1.16.18) ... Setting up build-essential (11.5) ... Setting up cd-hit (4.6-2012-04-25-1) ... Setting up libgd-gd2-perl (1:2.46-3+b1) ... Setting up libgd-text-perl (0.86-8) ... Setting up libgd-graph-perl (1.44-6) ... Setting up libperlio-gzip-perl (0.18-1+b2) ... Setting up fastx-toolkit (0.0.13.2-1) ... Setting up libbio-graphics-perl (2.26-1) ... Setting up libcgi-session-perl (4.46-1) ... Setting up libjson-perl (2.53-1) ... Setting up libstatistics-descriptive-perl (3.0603-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up liburi-perl (1.60-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-2) ... Setting up libhtml-tree-perl (5.02-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.03-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.48-1+b1) ... Setting up libio-socket-ssl-perl (1.76-2) ... Setting up libnet-http-perl (6.03-2) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libwww-perl (6.04-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libdbd-sqlite3-perl (1.37-1) ... Setting up gbrowse (2.48~dfsg-1) ... Setting up gff2aplot (2.0-7) ... Setting up libgetopt-euclid-perl (0.3.5-1) ... Setting up libmath-random-mt-perl (1.15-2) ... Setting up grinder (0.4.5-1) ... Setting up jmol-applet (12.2.32+dfsg2-1) ... Setting up jalview (2.7.dfsg-2) ... Setting up liberror-perl (0.17-1) ... Setting up libipc-sharelite-perl (0.17-2) ... Setting up libcache-cache-perl (1.06-2) ... Setting up libace-perl (1.92-2+b2) ... Setting up libai-fann-perl (0.10-1) ... Setting up libalgorithm-c3-perl (0.08-1) ... Setting up libalgorithm-diff-perl (1.19.02-2) ... Setting up libalgorithm-diff-xs-perl (0.04-2+b1) ... Setting up libalgorithm-merge-perl (0.08-2) ... Setting up libalgorithm-munkres-perl (0.08-2) ... Setting up libdevel-symdump-perl (2.08-4) ... Setting up libapache2-mod-perl2 (2.0.7-3) ... Enabling module perl. To activate the new configuration, you need to run: service apache2 restart Setting up libapache-dbi-perl (1.11-1) ... Setting up libapache2-reload-perl (0.12-1) ... Setting up libparams-util-perl (1.07-1) ... Setting up libsub-install-perl (0.926-1) ... Setting up libdata-optlist-perl (0.107-1) ... Setting up libparams-classify-perl (0.013-4) ... Setting up libmodule-runtime-perl (0.013-1) ... Setting up libtry-tiny-perl (0.11-1) ... Setting up libmodule-implementation-perl (0.06-1) ... Setting up liblist-moreutils-perl (0.33-1+b1) ... Setting up libpackage-deprecationmanager-perl (0.13-1) ... Setting up libpackage-stash-perl (0.33-1) ... Setting up libclass-load-perl (0.17-1) ... Setting up libclass-load-xs-perl (0.04-1) ... Setting up libsub-exporter-perl (0.984-1) ... Setting up libdevel-globaldestruction-perl (0.06-1) ... Setting up libeval-closure-perl (0.08-1) ... Setting up libclass-c3-perl (0.24-1) ... Setting up libmro-compat-perl (0.11-1) ... Setting up libpackage-stash-xs-perl (0.24-1+b1) ... Setting up libsub-name-perl (0.05-1+b2) ... Setting up libtask-weaken-perl (1.03-1) ... Setting up libmoose-perl (2.0603-1) ... Setting up libarray-compare-perl (2.02-1) ... Setting up libvariable-magic-perl (0.50-1) ... Setting up libb-hooks-endofscope-perl (0.11-1) ... Setting up libbio-asn1-entrezgene-perl (1.100-1) ... Setting up libbio-scf-perl (1.03-1+b2) ... Setting up libcarp-clan-perl (6.04-1) ... Setting up libbit-vector-perl (7.2-1) ... Setting up libbsd-resource-perl (1.2904-1+b2) ... Setting up libclass-c3-xs-perl (0.13-1+b2) ... Setting up libclass-inspector-perl (1.27-1) ... Setting up libclone-perl (0.31-1+b2) ... Setting up libcommon-sense-perl (3.6-1) ... Setting up libconvert-binary-c-perl (0.76-1+b2) ... Setting up libconvert-binhex-perl (1.119+pristine-3) ... Setting up libcrypt-ssleay-perl (0.58-1) ... Setting up libdate-calc-perl (6.3-1) ... Setting up libdate-calc-xs-perl (6.3-1) ... Setting up libdate-manip-perl (6.32-1) ... Setting up libdbd-pg-perl (2.19.2-2+deb7u1) ... Setting up libsub-identify-perl (0.04-1+b2) ... Setting up libnamespace-clean-perl (0.23-1) ... Setting up libdevel-partialdump-perl (0.15-1) ... Setting up libfcgi-perl (0.74-1+b1) ... Setting up libfile-basedir-perl (0.03-1) ... Setting up libfile-desktopentry-perl (0.04-3) ... Setting up libfile-fcntllock-perl (0.14-2) ... Setting up libfile-mimeinfo-perl (0.16-1) ... Setting up libfont-afm-perl (1.20-1) ... Setting up libfreezethaw-perl (0.5001-1) ... Setting up libsvg-perl (2.52-1) ... Setting up libgd-svg-perl (0.33-1) ... Setting up libheap-perl (0.80-2) ... Setting up libgraph-perl (1:0.91-1) ... Setting up libio-pty-perl (1:1.08-1+b2) ... Setting up libipc-run-perl (0.92-1) ... Setting up libxml-parser-perl (2.41-1+b1) ... Setting up libxml-twig-perl (1:3.39-1) ... Setting up libxml-xpath-perl (1.13-7) ... Setting up libparse-recdescent-perl (1.967009+dfsg-1) ... Setting up libgraphviz-perl (2.10-1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libhtml-format-perl (2.10-1) ... Setting up libhtml-template-perl (2.91-1) ... Setting up libsocket-perl (2.002-1) ... Setting up libio-socket-ip-perl (0.16-2) ... Setting up libio-stringy-perl (2.110-5) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up libjson-xs-perl (2.320-1+b1) ... Setting up libmailtools-perl (2.09-1) ... Setting up libmath-derivative-perl (0.01-6) ... Setting up libmath-spline-perl (0.01-4) ... Setting up libmime-tools-perl (5.503-1) ... Setting up libmldbm-perl (2.04-1) ... Setting up libnet-dbus-perl (1.0.0-1+b1) ... Setting up libole-storage-lite-perl (0.19-1) ... Setting up libossp-uuid-perl (1.6.2-1.3) ... Setting up libpostscript-perl (0.06-2) ... Setting up libsoap-lite-perl (0.714-1) ... Setting up libsort-naturally-perl (1.02-1) ... Setting up libspreadsheet-writeexcel-perl (2.37-1) ... Setting up libunicode-map-perl (0.112-10+b3) ... Setting up libspreadsheet-parseexcel-perl (0.5800-1) ... Setting up libtree-dagnode-perl (1.06-1) ... Setting up libsvg-graph-perl (0.02-2) ... Setting up libterm-readline-gnu-perl (1.20-2+b1) ... Setting up libtie-ixhash-perl (1.21-2) ... Setting up libx11-protocol-perl (0.56-4) ... Setting up libxml-perl (0.08-2) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up libxml-dom-perl (1.44-1) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up libxml-dom-xpath-perl (0.14-1) ... Setting up libxml-namespacesupport-perl (1.09-3) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-filter-buffertext-perl (1.01-5) ... Setting up libxml-libxml-perl (2.0001+dfsg-1+deb7u1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxslt-perl (1.77-1) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-sax-writer-perl (0.53-1) ... Setting up libxml-simple-perl (2.20-1) ... Setting up libxml-writer-perl (0.615-1) ... Setting up libyaml-perl (0.81-1) ... Setting up mipe (1.1-4) ... Setting up mlv-smile (1.47-3) ... Setting up ncbi-blast+ (2.2.26-3) ... Setting up perl-doc (5.14.2-21+deb7u3) ... Setting up perl-tk (1:804.030-1) ... Setting up perlprimer (1.1.21-1) ... Setting up r-base-dev (2.15.1-4) ... Setting up ssake (3.8-2) ... Setting up librg-reprof-bundle-perl (1.0.1-1) ... Setting up librg-utils-perl (1.0.43-1) ... Setting up libset-scalar-perl (1.25-1) ... Setting up pp-popularity-contest (1.0.5-1) ... Setting up profphd (1.0.39-1) ... Setting up reprof (1.0.1-1) ... Setting up vcftools (0.1.9-1) ... Setting up liblwp-protocol-https-perl (6.03-1) ... Processing triggers for sgml-base ... Setting up gnustep-base-common (1.22.1-4+deb7u1) ... Setting up libgnustep-base1.22 (1.22.1-4+deb7u1) ... Setting up gnustep-base-runtime (1.22.1-4+deb7u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up mknfonts.tool (0.5-11+b3) ... Setting up gnustep-back-common (0.20.1-2.1) ... Generating GNUstep nfont descriptions... done. Setting up gnustep-gui-common (0.20.0-3) ... Setting up libgnustep-gui0.20 (0.20.0-3+b1) ... Setting up gnustep-gui-runtime (0.20.0-3+b1) ... Setting up gnustep-back0.20-art (0.20.1-2.1) ... update-alternatives: using /usr/lib/GNUstep/Bundles/libgnustep-art-020.bundle to provide /usr/lib/GNUstep/Bundles/libgnustep-back-020.bundle (gnustep-back-020) in auto mode Setting up gnustep-back0.20 (0.20.1-2.1) ... Setting up gnustep-gpbs (0.20.1-2.1) ... Setting up adun.app (0.81-5+b2) ... Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 171 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d.... Adding debian:cacert.org.pem Adding debian:ca.pem Adding debian:A-Trust-nQual-03.pem Adding debian:ACCVRAIZ1.pem Adding debian:ACEDICOM_Root.pem Adding debian:AC_Raíz_Certicámara_S.A..pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AddTrust_External_Root.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:America_Online_Root_Certification_Authority_1.pem Adding debian:America_Online_Root_Certification_Authority_2.pem Adding debian:ApplicationCA_-_Japanese_Government.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_CA_1.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_CA_1.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig.pem Adding debian:CA_Disig_Root_R1.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CNNIC_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:Certigna.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:Certum_Root_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem Adding debian:ComSign_CA.pem Adding debian:ComSign_Secured_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:DST_Root_CA_X3.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem Adding debian:EC-ACC.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust.net_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Equifax_Secure_CA.pem Adding debian:Equifax_Secure_Global_eBusiness_CA.pem Adding debian:Equifax_Secure_eBusiness_CA_1.pem Adding debian:GTE_CyberTrust_Global_Root.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:IGC_A.pem Adding debian:Izenpe.com.pem Adding debian:Juur-SK.pem Adding debian:Microsec_e-Szigno_Root_CA.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NetLock_Business_=Class_B=_Root.pem Adding debian:NetLock_Express_=Class_C=_Root.pem Adding debian:NetLock_Notary_=Class_A=_Root.pem Adding debian:NetLock_Qualified_=Class_QA=_Root.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:PSCProcert.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:RSA_Root_Certificate_1.pem Adding debian:RSA_Security_2048_v3.pem Adding debian:Root_CA_Generalitat_Valenciana.pem Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Adding debian:SG_TRUST_SERVICES_RACINE.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Sonera_Class_1_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:StartCom_Certification_Authority.pem Adding debian:StartCom_Certification_Authority_2.pem Adding debian:StartCom_Certification_Authority_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Platinum_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:Swisscom_Root_CA_2.pem Adding debian:Swisscom_Root_EV_CA_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TC_TrustCenter_Class_2_CA_II.pem Adding debian:TC_TrustCenter_Class_3_CA_II.pem Adding debian:TC_TrustCenter_Universal_CA_I.pem Adding debian:TDC_Internet_Root_CA.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Taiwan_GRCA.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Thawte_Premium_Server_CA.pem Adding debian:Thawte_Server_CA.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem Adding debian:UTN_DATACorp_SGC_Root_CA.pem Adding debian:UTN_USERFirst_Email_Root_CA.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:ValiCert_Class_1_VA.pem Adding debian:ValiCert_Class_2_VA.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:spi-ca-2003.pem Adding debian:spi-cacert-2008.pem done. done. Processing triggers for python-support ... Processing triggers for libgdk-pixbuf2.0-0:amd64 ... Processing triggers for menu ... 2m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', '-y', 'install', 'science-biology'] 2m55.9s INFO: Running scripts post_install 2m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_install_exceptions'] 2m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_install_exceptions'] 2m55.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 2m58.1s DUMP: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 12896 root cwd DIR 0,35 480 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 12896 root rtd DIR 0,35 480 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 12896 root txt REG 0,35 106920 273510003 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/bin/dash mysqld_sa 12896 root mem REG 0,35 1607696 273522051 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.13.so mysqld_sa 12896 root mem REG 0,35 136936 273522054 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.13.so mysqld_sa 12896 root 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 12896 root 1w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 12896 root 2w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 12896 root 10r REG 0,35 24917 273618938 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/bin/mysqld_safe mysqld 13233 150 cwd DIR 0,35 180 273618851 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql mysqld 13233 150 rtd DIR 0,35 480 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld 13233 150 txt REG 0,35 12135856 273618730 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/sbin/mysqld mysqld 13233 150 mem REG 0,35 47616 273522042 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_files-2.13.so mysqld 13233 150 mem REG 0,35 43560 273522040 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_nis-2.13.so mysqld 13233 150 mem REG 0,35 31584 273522044 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_compat-2.13.so mysqld 13233 150 mem REG 0,35 89056 273522045 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnsl-2.13.so mysqld 13233 150 mem REG 0,35 1607696 273522051 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.13.so mysqld 13233 150 mem REG 0,35 89056 273522012 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 13233 150 mem REG 0,35 530736 273522047 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libm-2.13.so mysqld 13233 150 mem REG 0,35 991600 273514083 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.17 mysqld 13233 150 mem REG 0,35 14768 273522048 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libdl-2.13.so mysqld 13233 150 mem REG 0,35 35104 273522049 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libcrypt-2.13.so mysqld 13233 150 mem REG 0,35 40656 273597816 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 13233 150 mem REG 0,35 31744 273522036 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/librt-2.13.so mysqld 13233 150 mem REG 0,35 92752 273521989 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libz.so.1.2.7 mysqld 13233 150 mem REG 0,35 5464 273602768 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 13233 150 mem REG 0,35 131107 273522055 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libpthread-2.13.so mysqld 13233 150 mem REG 0,35 136936 273522054 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.13.so mysqld 13233 150 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 13233 150 4uW REG 0,35 18874368 273851815 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ibdata1 mysqld 13233 150 9uW REG 0,35 5242880 273851816 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile0 mysqld 13233 150 10uW REG 0,35 5242880 273851817 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile1 mysqld 13233 150 14u REG 0,35 35 273851726 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSM mysqld 13233 150 15r REG 0,35 0 273851727 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSV mysqld 13233 150 16u REG 0,35 2048 273858093 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYI mysqld 13233 150 17u REG 0,35 328 273858094 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYD mysqld 13233 150 18u REG 0,35 4096 273858045 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYI mysqld 13233 150 19u REG 0,35 844 273858046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYD mysqld 13233 150 20u REG 0,35 5120 273851757 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYI mysqld 13233 150 21u REG 0,35 1386 273851758 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYD mysqld 13233 150 22u REG 0,35 2048 273858084 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYI mysqld 13233 150 23u REG 0,35 0 273858085 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYD mysqld 13233 150 24u REG 0,35 4096 273857922 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYI mysqld 13233 150 25u REG 0,35 0 273857923 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYD mysqld 13233 150 26u REG 0,35 4096 273857928 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYI mysqld 13233 150 27u REG 0,35 0 273857929 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYD mysqld 13233 150 28u REG 0,35 1024 273851684 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYI mysqld 13233 150 29u REG 0,35 0 273851685 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYD mysqld 13233 150 30u REG 0,35 4096 273858021 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYI mysqld 13233 150 31u REG 0,35 0 273858022 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYD mysqld 13233 150 33u REG 0,35 2048 273858081 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYI mysqld 13233 150 34u REG 0,35 0 273858082 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYD mysqld 13233 150 37u REG 0,35 3072 273851696 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYI mysqld 13233 150 38u REG 0,35 1120 273851697 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYD mysqld 13233 150 39u REG 0,35 18432 273851702 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYI mysqld 13233 150 40u REG 0,35 104410 273851703 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYD mysqld 13233 150 41u REG 0,35 20480 273851699 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYI mysqld 13233 150 42u REG 0,35 9990 273851700 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYD mysqld 13233 150 43u REG 0,35 21504 273851693 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYI mysqld 13233 150 44u REG 0,35 482440 273851694 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYD mysqld 13233 150 45u REG 0,35 1024 273851735 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 13233 150 46u REG 0,35 0 273851736 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 13233 150 47u REG 0,35 2048 273858075 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYI mysqld 13233 150 48u REG 0,35 0 273858076 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYD mysqld 13233 150 49u REG 0,35 1024 273857957 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYI mysqld 13233 150 50u REG 0,35 0 273857958 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYD mysqld 13233 150 51u REG 0,35 1024 273857964 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYI mysqld 13233 150 52u REG 0,35 0 273857965 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYD mysqld 13233 150 53u REG 0,35 1024 273851708 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYI mysqld 13233 150 54u REG 0,35 0 273851709 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYD mysqld 13233 150 55u REG 0,35 1024 273851717 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 13233 150 56u REG 0,35 0 273851718 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 13233 150 57u REG 0,35 1024 273851705 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYI mysqld 13233 150 58u REG 0,35 0 273851706 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYD mysqld 13233 150 59u REG 0,35 1024 273851711 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 13233 150 60u REG 0,35 0 273851712 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 13233 150 61u REG 0,35 1024 273851714 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 13233 150 62u REG 0,35 0 273851715 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 13233 150 63u REG 0,35 35 273857961 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSM mysqld 13233 150 64r REG 0,35 0 273857962 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSV logger 13234 root cwd DIR 0,35 480 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t logger 13234 root rtd DIR 0,35 480 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t logger 13234 root txt REG 0,35 19400 273513780 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/bin/logger logger 13234 root mem REG 0,35 1607696 273522051 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.13.so logger 13234 root mem REG 0,35 136936 273522054 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.13.so logger 13234 root 2w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null 2m58.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 2m58.1s ERROR: WARN: Processes are running inside chroot: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 12896 root cwd DIR 0,35 480 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 12896 root rtd DIR 0,35 480 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 12896 root txt REG 0,35 106920 273510003 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/bin/dash mysqld_sa 12896 root mem REG 0,35 1607696 273522051 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.13.so mysqld_sa 12896 root mem REG 0,35 136936 273522054 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.13.so mysqld_sa 12896 root 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 12896 root 1w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 12896 root 2w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 12896 root 10r REG 0,35 24917 273618938 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/bin/mysqld_safe mysqld 13233 150 cwd DIR 0,35 180 273618851 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql mysqld 13233 150 rtd DIR 0,35 480 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld 13233 150 txt REG 0,35 12135856 273618730 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/sbin/mysqld mysqld 13233 150 mem REG 0,35 47616 273522042 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_files-2.13.so mysqld 13233 150 mem REG 0,35 43560 273522040 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_nis-2.13.so mysqld 13233 150 mem REG 0,35 31584 273522044 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_compat-2.13.so mysqld 13233 150 mem REG 0,35 89056 273522045 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnsl-2.13.so mysqld 13233 150 mem REG 0,35 1607696 273522051 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.13.so mysqld 13233 150 mem REG 0,35 89056 273522012 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 13233 150 mem REG 0,35 530736 273522047 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libm-2.13.so mysqld 13233 150 mem REG 0,35 991600 273514083 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.17 mysqld 13233 150 mem REG 0,35 14768 273522048 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libdl-2.13.so mysqld 13233 150 mem REG 0,35 35104 273522049 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libcrypt-2.13.so mysqld 13233 150 mem REG 0,35 40656 273597816 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 13233 150 mem REG 0,35 31744 273522036 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/librt-2.13.so mysqld 13233 150 mem REG 0,35 92752 273521989 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libz.so.1.2.7 mysqld 13233 150 mem REG 0,35 5464 273602768 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 13233 150 mem REG 0,35 131107 273522055 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libpthread-2.13.so mysqld 13233 150 mem REG 0,35 136936 273522054 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.13.so mysqld 13233 150 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 13233 150 4uW REG 0,35 18874368 273851815 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ibdata1 mysqld 13233 150 9uW REG 0,35 5242880 273851816 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile0 mysqld 13233 150 10uW REG 0,35 5242880 273851817 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile1 mysqld 13233 150 14u REG 0,35 35 273851726 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSM mysqld 13233 150 15r REG 0,35 0 273851727 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSV mysqld 13233 150 16u REG 0,35 2048 273858093 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYI mysqld 13233 150 17u REG 0,35 328 273858094 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYD mysqld 13233 150 18u REG 0,35 4096 273858045 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYI mysqld 13233 150 19u REG 0,35 844 273858046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYD mysqld 13233 150 20u REG 0,35 5120 273851757 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYI mysqld 13233 150 21u REG 0,35 1386 273851758 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYD mysqld 13233 150 22u REG 0,35 2048 273858084 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYI mysqld 13233 150 23u REG 0,35 0 273858085 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYD mysqld 13233 150 24u REG 0,35 4096 273857922 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYI mysqld 13233 150 25u REG 0,35 0 273857923 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYD mysqld 13233 150 26u REG 0,35 4096 273857928 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYI mysqld 13233 150 27u REG 0,35 0 273857929 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYD mysqld 13233 150 28u REG 0,35 1024 273851684 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYI mysqld 13233 150 29u REG 0,35 0 273851685 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYD mysqld 13233 150 30u REG 0,35 4096 273858021 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYI mysqld 13233 150 31u REG 0,35 0 273858022 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYD mysqld 13233 150 33u REG 0,35 2048 273858081 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYI mysqld 13233 150 34u REG 0,35 0 273858082 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYD mysqld 13233 150 37u REG 0,35 3072 273851696 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYI mysqld 13233 150 38u REG 0,35 1120 273851697 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYD mysqld 13233 150 39u REG 0,35 18432 273851702 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYI mysqld 13233 150 40u REG 0,35 104410 273851703 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYD mysqld 13233 150 41u REG 0,35 20480 273851699 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYI mysqld 13233 150 42u REG 0,35 9990 273851700 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYD mysqld 13233 150 43u REG 0,35 21504 273851693 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYI mysqld 13233 150 44u REG 0,35 482440 273851694 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYD mysqld 13233 150 45u REG 0,35 1024 273851735 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 13233 150 46u REG 0,35 0 273851736 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 13233 150 47u REG 0,35 2048 273858075 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYI mysqld 13233 150 48u REG 0,35 0 273858076 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYD mysqld 13233 150 49u REG 0,35 1024 273857957 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYI mysqld 13233 150 50u REG 0,35 0 273857958 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYD mysqld 13233 150 51u REG 0,35 1024 273857964 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYI mysqld 13233 150 52u REG 0,35 0 273857965 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYD mysqld 13233 150 53u REG 0,35 1024 273851708 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYI mysqld 13233 150 54u REG 0,35 0 273851709 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYD mysqld 13233 150 55u REG 0,35 1024 273851717 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 13233 150 56u REG 0,35 0 273851718 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 13233 150 57u REG 0,35 1024 273851705 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYI mysqld 13233 150 58u REG 0,35 0 273851706 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYD mysqld 13233 150 59u REG 0,35 1024 273851711 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 13233 150 60u REG 0,35 0 273851712 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 13233 150 61u REG 0,35 1024 273851714 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 13233 150 62u REG 0,35 0 273851715 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 13233 150 63u REG 0,35 35 273857961 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSM mysqld 13233 150 64r REG 0,35 0 273857962 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSV logger 13234 root cwd DIR 0,35 480 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t logger 13234 root rtd DIR 0,35 480 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t logger 13234 root txt REG 0,35 19400 273513780 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/bin/logger logger 13234 root mem REG 0,35 1607696 273522051 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.13.so logger 13234 root mem REG 0,35 136936 273522054 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.13.so logger 13234 root 2w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null 2m58.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpbk5I5t to jessie 2m58.1s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ jessie main 2m58.1s INFO: Running scripts pre_distupgrade 2m58.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_distupgrade_exceptions'] 2m58.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_distupgrade_exceptions'] 2m58.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m58.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m58.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_distupgrade_zz_database-server'] 3m4.1s DUMP: Upgrading early: mysql-server Get:1 http://mirror.bm.debian.org jessie Release.gpg [2434 B] Get:2 http://mirror.bm.debian.org jessie Release [148 kB] Get:3 http://mirror.bm.debian.org jessie/main amd64 Packages [6789 kB] Get:4 http://mirror.bm.debian.org jessie/main Translation-en [4583 kB] Fetched 11.5 MB in 2s (4409 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: mysql-server 1 upgraded, 0 newly installed, 0 to remove and 803 not upgraded. Need to get 77.0 kB of archives. After this operation, 3072 B disk space will be freed. Get:1 http://mirror.bm.debian.org/debian/ jessie/main mysql-server all 5.5.58-0+deb8u1 [77.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 77.0 kB in 0s (0 B/s) (Reading database ... 63091 files and directories currently installed.) Preparing to replace mysql-server 5.5.47-0+deb7u1 (using .../mysql-server_5.5.58-0+deb8u1_all.deb) ... Unpacking replacement mysql-server ... Setting up mysql-server (5.5.58-0+deb8u1) ... 3m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_distupgrade_zz_database-server'] 3m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 3m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 3m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', 'update'] 3m7.5s DUMP: Hit http://mirror.bm.debian.org jessie Release.gpg Hit http://mirror.bm.debian.org jessie Release Hit http://mirror.bm.debian.org jessie/main amd64 Packages Hit http://mirror.bm.debian.org jessie/main Translation-en Reading package lists... 3m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', 'update'] 3m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', '-yf', 'dist-upgrade'] 14m18.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: cpp-4.7 g++-4.7 gcc-4.7 gcc-4.7-base gfortran-4.7 ghemical gnustep-gpbs libgd-gd2-perl libghemical5 libgvc5 libopenmpi1.3 libpdl-stats-perl libperl5.14 libstdc++6-4.7-dev libvibrant6a r-other-mott-happy The following NEW packages will be installed: acl adwaita-icon-theme aevol aglfn anfo apache2-bin apache2-data aragorn arden at-spi2-core autopoint bamtools bc biosquid bsdmainutils bzip2-doc cassiopee cdbfasta cgmanager chimeraslayer circos circos-tools clearcut colord colord-data concavity conservation-code cpp-4.9 cython dbus-x11 dconf-gsettings-backend dconf-service debhelper default-jre dh-python discosnp dmsetup dnaclust docutils-common docutils-doc dvipng edtsurf emacsen-common fastaq fastqc fitgcp flexbar fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu fonts-dejavu-core fonts-dejavu-extra fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-oflb-asana-math fonts-sil-gentium fonts-sil-gentium-basic fonts-stix fonts-texgyre freecontact g++-4.9 gasic gcc-4.9 gcc-4.9-base gconf-service gconf2 gconf2-common genometools genometools-common gettext gettext-base gfortran-4.9 giira glib-networking glib-networking-common glib-networking-services glpk-utils gnome-mime-data gnuplot-data gnuplot-tex gnustep-back0.24 gnustep-back0.24-cairo gsettings-desktop-schemas gstreamer1.0-plugins-base hmmer2 idba imagemagick-6.q16 init init-system-helpers intltool-debian ipig iproute2 ipython isc-dhcp-client isc-dhcp-common iso-codes king kissplice ksh libamd2.3.1 libanfo0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libarchive-extract-perl libarchive13 libasan1 libasound2-data libasprintf-dev libasprintf0c2 libasync-interrupt-perl libatk-bridge2.0-0 libatlas3-base libatomic1 libatspi2.0-0 libaudit-common libaudit1 libauthen-sasl-perl libavahi-glib1 libb-hooks-op-check-perl libbambamc0 libbamtools2.3.0 libbareword-filehandles-perl libbcpkix-java libblas-common libbonobo2-0 libbonobo2-common libboost-chrono1.55.0 libboost-date-time1.55.0 libboost-filesystem1.55.0 libboost-iostreams1.55.0 libboost-math1.55.0 libboost-mpi1.55.0 libboost-program-options1.55.0 libboost-random1.55.0 libboost-regex1.55.0 libboost-serialization1.55.0 libboost-system1.55.0 libboost-thread1.55.0 libboost-timer1.55.0 libcairo-gobject2 libcanberra-gtk3-0 libcanberra-gtk3-module libcanberra0 libcap-ng0 libcap2-bin libcarp-always-perl libcassie1 libcdparanoia0 libcdt5 libcfitsio2 libcgi-fast-perl libcgi-pm-perl libcgmanager0 libcgraph6 libcilkrts5 libclass-method-modifiers-perl libclass-tiny-perl libclass-xsaccessor-perl libcloog-isl4 libcneartree5 libcofoja-java libcolamd2.8.0 libcolord2 libcolorhug2 libcommons-collections3-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-math3-java libcommons-net1-java libconfig-general-perl libconfig-inifiles-perl libcpan-meta-perl libcqrlib2 libcrypt-rc4-perl libcryptsetup4 libcupsfilters1 libcurl3-gnutls libdata-dumper-simple-perl libdata-section-perl libdb5.3 libdbus-glib-1-2 libdconf1 libdebconfclient0 libdevel-caller-perl libdevel-lexalias-perl libdevel-stacktrace-perl libdevmapper1.02.1 libdigest-perl-md5-perl libdist-checkconflicts-perl libdns-export100 libdrm-nouveau2 libelf1 libelfg0 libelk0 libev-perl libexif12 libexiv2-13 libexpat1-dev libexporter-tiny-perl libfakeroot libffi6 libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-chdir-perl libfile-copy-recursive-perl libfile-homedir-perl libfile-slurp-tiny-perl libfile-which-perl libfltk-images1.3 libfltk1.3 libfont-ttf-perl libfreecontact0 libgcc-4.9-dev libgconf-2-4 libgconf2-4 libgcrypt20 libgd-perl libgd3 libgenometools0 libgetopt-simple-perl libgettextpo-dev libgettextpo0 libgflags2 libgfortran-4.9-dev libglew1.10 libglpk-java libglpk36 libgmp-dev libgmpxx4ldbl libgnome-2-0 libgnome2-0 libgnome2-bin libgnome2-common libgnomevfs2-0 libgnomevfs2-common libgnomevfs2-extra libgnustep-base1.24 libgnustep-gui0.24 libgnutls-deb0-28 libgo-perl libgoogle-glog0 libgphoto2-6 libgphoto2-l10n libgphoto2-port10 libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgtk-3-0 libgtk-3-bin libgtk-3-common libguard-perl libgudev-1.0-0 libgusb2 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b libhdf5-8 libhogweed2 libhtml-tableextract-perl libhwloc-plugins libhwloc5 libicu52 libieee1284-3 libimport-into-perl libindirect-perl libio-all-perl libio-html-perl libio-sessiondata-perl libirs-export91 libisc-export95 libisccfg-export90 libisl10 libisorelax-java libitext-java libjbzip2-java libjellyfish-2.0-2 libjgoodies-common-java libjpeg62-turbo libjs-jquery-ui libjs-sphinxdoc libjson-c2 libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp0 libjzlib-java libkmod2 libkpathsea6 liblexical-sealrequirehints-perl liblist-allutils-perl libllvm3.5 liblog-message-perl liblog-message-simple-perl liblog4cpp5 liblsan0 liblzma-dev liblzo2-2 libmagickcore-6.q16-2 libmagickcore-6.q16-2-extra libmagickwand-6.q16-2 libmail-java libmail-sendmail-perl libmath-bezier-perl libmath-round-perl libmath-vec-perl libmath-vecstat-perl libmodule-build-perl libmodule-pluggable-perl libmodule-runtime-conflicts-perl libmodule-signature-perl libmoo-perl libmotif-common libmpc3 libmpdec2 libmsv-java libmultidimensional-perl libncursesw5-dev libnet-smtp-ssl-perl libnettle4 libnih-dbus1 libnih1 libnotify4 libopenjpeg5 libopenmpi1.6 libopenms1.11 liborbit-2-0 liborc-0.4-0 libpackage-constants-perl libpadwalker-perl libpam-cap libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangox-1.0-0 libpangoxft-1.0-0 libparams-validate-perl libperl4-corelibs-perl libperl5.20 libpod-coverage-perl libpod-latex-perl libpod-readme-perl libpolkit-agent-1-0 libpolkit-backend-1-0 libpolkit-gobject-1-0 libpoppler-qt4-4 libpoppler46 libpopt0 libpotrace0 libprocps3 libprotobuf9 libproxy1 libptexenc1 libpth20 libpvm3 libpython-all-dev libpython-dev libpython-stdlib libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libqhull6 libqt4-xmlpatterns libqtwebkit4 libreadonly-perl libregexp-common-perl librelaxng-datatype-java librelion-1.3-1 librest-0.7-0 librg-exception-perl librole-tiny-perl librtmp1 libruby2.1 libsane libsane-common libsane-extras libsane-extras-common libsasl2-modules-db libsctp1 libset-intspan-perl libsmartcols1 libsnp-sites1 libsoftware-license-perl libsoup-gnome2.4-1 libsoup2.4-1 libspiffy-perl libstdc++-4.9-dev libstrictures-perl libstring-approx-perl libsub-exporter-progressive-perl libsvm3 libsynctex1 libsys-hostname-long-perl libsystemd0 libtasn1-6 libtbb2 libtcl8.5 libtcl8.6 libtdb1 libterm-ui-perl libtest-pod-perl libtext-format-perl libtext-soundex-perl libtext-template-perl libtheora0 libtiff5 libtk8.5 libtk8.6 libtre5 libtsan0 libtxc-dxtn-s2tc0 libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libudev1 libunistring0 libunwind8 libusb-1.0-0 libv4l-0 libv4lconvert0 libvibrant6b libvisual-0.4-0 libvisual-0.4-plugins libvm-ec2-perl libvorbisfile3 libvpx1 libwayland-client0 libwayland-cursor0 libwebp5 libwebpdemux1 libwebpmux1 libwxbase3.0-0 libwxgtk3.0-0 libxcb-dri2-0 libxcb-dri3-0 libxcb-present0 libxcb-sync1 libxerces-c3.1 libxkbcommon0 libxm4 libxml-checker-perl libxmlrpc-lite-perl libxshmfence1 libxtables10 libyaml-tiny-perl libzeep3.0 libzzip-0-13 littler lksctp-tools lmodern logol-bin ltrsift lua-filesystem lua-lpeg lua-md5 macs man-db mapsembler2 metastudent metastudent-data metastudent-data-2 microbiomeutil microbiomeutil-data minia mrs nast-ier ncbi-seg norsnet norsp notification-daemon ocl-icd-libopencl1 openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless openms openms-common openssh-client paraclu parsinsert pdb2pqr perm phylip phyutility po-debconf policykit-1 prank predictnls predictprotein prerex preview-latex-style prime-phylo proalign probabel prodigal profbval profisis prosper ps2eps pvm pycorrfit pyqi pyscanfcs python-all python-all-dev python-biom-format python-biopython python-biopython-doc python-chardet python-crypto python-decorator python-dev python-docutils python-gmpy python-h5py python-htseq python-jinja2 python-mock python-mpi4py python-mpmath python-multipletau python-nose python-pexpect python-pil python-pkg-resources python-pyfits python-pyglet python-pygments python-pyrex python-pysam python-qcli python-renderpm python-reportlab python-reportlab-accel python-roman python-scipy python-simplegeneric python-six python-sphinx python-sympy python-wxgtk3.0 python-wxversion python-yaml python2.7-dev python3 python3-minimal python3-nose python3-pkg-resources python3.4 python3.4-minimal qiime-data qtcore4-l10n r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation r-bioc-xvector r-cran-abind r-cran-ape r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-brew r-cran-checkmate r-cran-chron r-cran-dichromat r-cran-domc r-cran-doparallel r-cran-evaluate r-cran-fail r-cran-fastcluster r-cran-foreach r-cran-formula r-cran-genabel.data r-cran-getopt r-cran-gtable r-cran-hmisc r-cran-hwriter r-cran-iterators r-cran-labeling r-cran-latticeextra r-cran-mapproj r-cran-maps r-cran-matrixstats r-cran-munsell r-cran-optparse r-cran-permute r-cran-pkgkitten r-cran-r.methodss3 r-cran-rcpp r-cran-rcurl r-cran-scales r-cran-sendmailr r-cran-sp r-cran-tcltk2 r-cran-testthat r-cran-vegan r-cran-xml r-other-mott-happy.hbrem rate4site ray relion-bin rename rsync rtax ruby2.1 rubygems-integration saint sane-utils seaview seqan-apps seqtk smalt snap snp-sites soapdenovo soapdenovo2 sphinx-common sphinx-doc staden staden-common startpar swi-prolog swi-prolog-nox swi-prolog-x systemd systemd-shim systemd-sysv tcl tcl8.6 tcllib tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-math-extra texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc tipa tk tk-table tk8.6 tk8.6-blt2.5 tklib tophat topp trimmomatic ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis uc-echo udev update-inetd velvetoptimiser vprerex wigeon wise-data xauth xdg-user-dirs xkb-data xsltproc zalign The following packages will be upgraded: abacas adun.app alien-hunter altree amap-align ampliconnoise ant ant-contrib ant-optional apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common apbs apt aspell aspell-en autodock autodock-vina autogrid autotools-dev ballview base-files base-passwd bash bedtools binfmt-support binutils biomaj bioperl bioperl-run blast2 blcr-util blends-common blt bowtie bowtie2 boxshade bsdutils build-essential bwa bzip2 ca-certificates ca-certificates-java cd-hit cdbs clustalo clustalw clustalx coreutils cpp curl dash dbus debconf debconf-i18n debian-archive-keyring debianutils default-jre-headless dialign dialign-tx dialign-tx-data dictionaries-common diffutils disulfinder disulfinder-data dmidecode dpkg dpkg-dev dssp e2fslibs e2fsprogs embassy-domainatrix embassy-domalign embassy-domsearch emboss emboss-data emboss-lib fakeroot fastjar fasttree fastx-toolkit ffindex fftw2 figtree file filo findutils fontconfig fontconfig-config fonts-droid fonts-freefont-ttf fonts-liberation fonts-lyx freeglut3 g++ gamgi gawk gbrowse gcc gdpc gentle gfortran ghostscript gir1.2-glib-2.0 glam2 gnupg gnuplot gnuplot-nox gnustep-back-common gnustep-base-common gnustep-base-runtime gnustep-common gnustep-gui-common gnustep-gui-runtime gpgv graphviz grep grinder groff groff-base gromacs gromacs-data gzip heirloom-mailx hhsuite hhsuite-data hicolor-icon-theme hmmer hostname icedtea-netx icedtea-netx-common ifupdown imagemagick imagemagick-common infernal initscripts iproute jalview jarwrapper java-common java-wrappers javahelp2 javascript-common jellyfish junit4 krb5-locales last-align libace-perl libacl1 libai-fann-perl libaio1 libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libao-common libao4 libapache-dbi-perl libapache-mime4j-java libapache2-mod-perl2 libapache2-reload-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libapt-pkg4.12 libargtable2-0 libarray-compare-perl libasound2 libaspell15 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libattr1 libaudio2 libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libb-hooks-endofscope-perl libball1.4 libball1.4-data libballview1.4 libbcmail-java libbcprov-java libbio-asn1-entrezgene-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-dev libblas3 libblkid1 libbsd-resource-perl libbsd0 libbytecode-java libbz2-1.0 libbz2-dev libc-bin libc-dev-bin libc6 libc6-dev libcaca0 libcache-cache-perl libcairo2 libcap2 libcastor-core-java libcastor-xml-java libcbf0 libcgi-session-perl libclass-c3-perl libclass-c3-xs-perl libclass-inspector-perl libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcomerr2 libcommon-sense-perl libcommons-codec-java libcommons-dbcp-java libcommons-httpclient-java libcommons-lang-java libcommons-logging-java libcommons-pool-java libconvert-binary-c-perl libconvert-binhex-perl libcr0 libcroco3 libcrypt-ssleay-perl libcsiro0 libcups2 libcupsimage2 libcurl3 libcvector2 libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-globaldestruction-perl libdevel-partialdump-perl libdevel-symdump-perl libdirectfb-1.2-9 libdjvulibre-text libdjvulibre21 libdom4j-java libdpkg-perl libdrm-intel1 libdrm-radeon1 libdrm2 libedit2 liberror-perl libeval-closure-perl libexpat1 libfann2 libfcgi-perl libffindex0 libfftw3-3 libfile-desktopentry-perl libfile-fcntllock-perl libfile-mimeinfo-perl libflac8 libflite1 libfontconfig1 libfontenc1 libfreehep-graphics2d-java libfreetype6 libftgl2 libg20 libgcc1 libgcj-common libgd-graph-perl libgd-text-perl libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgeronimo-jta-1.1-spec-java libgetopt-euclid-perl libgfortran3 libgif4 libgirepository-1.0-1 libgl1-mesa-dri libgl1-mesa-glx libglade2-0 libglapi-mesa libglib2.0-0 libglib2.0-data libglu1-mesa libgmp10 libgnumail-java libgomp1 libgpg-error0 libgpm2 libgraph-perl libgraphviz-perl libgs9 libgs9-common libgsl0ldbl libgssapi-krb5-2 libgtextutils0 libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgtkglext1 libhamcrest-java libhdf4-0-alt libhmsbeagle1 libhpdf-2.2.1 libhsqldb-java libhtml-format-perl libhtml-parser-perl libhtml-template-perl libhtml-tree-perl libhttp-cookies-perl libhttp-message-perl libhttpclient-java libhttpcore-java libhttpmime-java libibverbs1 libice-dev libice6 libidn11 libijs-0.35 libilmbase6 libint1 libio-pty-perl libio-socket-ip-perl libio-socket-ssl-perl libio-string-perl libipc-sharelite-perl libitext5-java libitm1 libjam-java libjasper1 libjaxen-java libjbig0 libjbig2dec0 libjcommon-java libjdom1-java libjebl2-java libjgoodies-forms-java libjs-jquery libjs-prototype libjs-underscore libjsch-java libjson-perl libjson-xs-perl libjson0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 liblensfun-data liblensfun0 liblist-moreutils-perl liblocale-gettext-perl liblog4j1.2-java liblqr-1-0 libltdl7 liblua5.1-0 liblwp-protocol-https-perl liblzma5 libmagic1 libmailtools-perl libmaloc1 libmath-random-mt-perl libmath-spline-perl libmath-tamuanova-perl libmiglayout-java libmime-tools-perl libmldbm-perl libmng1 libmodule-implementation-perl libmodule-runtime-perl libmoose-perl libmopac7-1gf libmount1 libmpfr4 libmro-compat-perl libmysql-java libmysqlclient18 libnamespace-clean-perl libnb-org-openide-util-java libnb-org-openide-util-lookup-java libncbi6 libncurses5 libncurses5-dev libncursesw5 libnet-dbus-perl libnet-http-perl libnet-ssleay-perl libnetpbm10 libnspr4 libnss3 libnuma1 libobjc4 libogg0 libopenbabel4 libopenexr6 libopengl-perl liboro-java libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-stash-perl libpackage-stash-xs-perl libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpathplan4 libpciaccess0 libpcre3 libpcre3-dev libpcrecpp0 libpcsclite1 libperlio-gzip-perl libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpq5 libproj0 libpthread-stubs0-dev libpulse0 libpython2.7 libqsastime0 libqt4-network libqt4-opengl libqt4-sql libqt4-sql-mysql libqt4-svg libqt4-test libqt4-xml libqtcore4 libqtdbus4 libqtgui4 libquadmath0 libreadline-dev libreadline6 libreadline6-dev librg-utils-perl librsvg2-2 librsvg2-common libsam-java libsasl2-2 libsasl2-modules libsaxonb-java libsc-data libsc7 libsdl1.2debian libselinux1 libsemanage-common libsemanage1 libsepol1 libservlet2.5-java libset-scalar-perl libsigsegv2 libslang2 libsm-dev libsm6 libsndfile1 libsoap-lite-perl libsocket-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite0 libsqlite3-0 libsquizz libss2 libssh2-1 libssl1.0.0 libstaden-read1 libstatistics-descriptive-perl libstdc++6 libsub-exporter-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsvg-perl libswitch-perl libsystemd-login0 libtamuanova-0.2 libtask-weaken-perl libtcmalloc-minimal4 libterm-readkey-perl libterm-readline-gnu-perl libtext-charwidth-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtimedate-perl libtinfo-dev libtinfo5 libtinyxml2.6.2 libtree-dagnode-perl libtry-tiny-perl libunicode-map-perl liburi-perl libusb-0.1-4 libustr-1.0-1 libuuid1 libvariable-magic-perl libvorbis0a libvorbisenc2 libwmf0.2-7 libwrap0 libwsdl4j-java libwww-perl libx11-6 libx11-data libx11-dev libx11-doc libx11-protocol-perl libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-glx0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxdot4 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-writer-perl libxml-twig-perl libxml-writer-perl libxml2 libxmu6 libxmuu1 libxom-java libxp6 libxpm4 libxrandr2 libxrender1 libxslt1.1 libxt-dev libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-perl libyaml-syck-perl linux-libc-dev login loki lsb-base lynx lynx-cur mafft make manpages manpages-dev maqview massxpert massxpert-data med-bio med-config med-tasks melting menu mime-support mira-assembler mknfonts.tool mothur mount mpi-default-bin mpqc mrbayes multiarch-support mustang mysql-client-5.5 mysql-common mysql-server-5.5 mysql-server-core-5.5 ncbi-blast+ ncbi-data ncbi-epcr ncbi-tools-bin ncbi-tools-x11 ncoils ncurses-base ncurses-bin neobio netbase netpbm njplot openmpi-bin openmpi-checkpoint openmpi-common openssl passwd patch pdl perl perl-base perl-doc perl-modules perl-tk perlprimer phyml picard-tools plasmidomics poppler-data pp-popularity-contest primer3 probalign procps profnet-bval profnet-chop profnet-con profnet-isis profnet-md profnet-norsnet profnet-prof profnet-snapfun profphd profphd-net profphd-utils proftmb proj-data psmisc psutils pymol pynast python python-ball python-ballview python-cogent python-dateutil python-egenix-mxdatetime python-egenix-mxtools python-gdata python-gi python-glade2 python-gobject python-gobject-2 python-gtk2 python-imaging python-lxml python-mako python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-mysqldb python-numpy python-pyparsing python-sip python-sqlalchemy python-sqlalchemy-ext python-tk python-tz python2.7 python2.7-minimal qiime r-base-core r-base-dev r-bioc-cummerbund r-bioc-hilbertvis r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-digest r-cran-foreign r-cran-g.data r-cran-genabel r-cran-ggplot2 r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-multicore r-cran-nlme r-cran-nnet r-cran-plyr r-cran-proto r-cran-qtl r-cran-rcolorbrewer r-cran-reshape r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-spatial r-cran-stringr r-cran-survival r-doc-html r-other-bio3d r-recommended rasmol raster3d raxml readline-common readseq rnahybrid ruby samtools science-biology science-config science-tasks sed sensible-utils shared-mime-info sibsim4 sim4 sqlite3 squizz sra-toolkit sra-toolkit-libs0 ssake ssl-cert staden-io-lib-utils sysv-rc sysvinit sysvinit-utils t-coffee tabix tar tasksel tasksel-data tcl8.5 tcpd theseus tigr-glimmer tk8.5 tm-align transtermhp tree-puzzle treeviewx ttf-dejavu ttf-dejavu-core ttf-dejavu-extra ttf-freefont ttf-liberation tzdata tzdata-java ucf ufraw-batch unzip util-linux vcftools velvet wise x11-common x11-utils x11-xserver-utils x11proto-core-dev x11proto-input-dev xbitmaps xdg-utils xorg-sgml-doctools xterm xtrans-dev xz-utils zip zlib1g zlib1g-dev 803 upgraded, 718 newly installed, 16 to remove and 0 not upgraded. Need to get 2122 MB of archives. After this operation, 4141 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ jessie/main libc6-dev amd64 2.19-18+deb8u10 [2003 kB] Get:2 http://mirror.bm.debian.org/debian/ jessie/main libc-dev-bin amd64 2.19-18+deb8u10 [238 kB] Get:3 http://mirror.bm.debian.org/debian/ jessie/main libc6 amd64 2.19-18+deb8u10 [4665 kB] Get:4 http://mirror.bm.debian.org/debian/ jessie/main libc-bin amd64 2.19-18+deb8u10 [1281 kB] Get:5 http://mirror.bm.debian.org/debian/ jessie/main linux-libc-dev amd64 3.16.51-2 [1081 kB] Get:6 http://mirror.bm.debian.org/debian/ jessie/main libitm1 amd64 4.9.2-10 [29.2 kB] Get:7 http://mirror.bm.debian.org/debian/ jessie/main libgomp1 amd64 4.9.2-10 [37.8 kB] Get:8 http://mirror.bm.debian.org/debian/ jessie/main gcc-4.9-base amd64 4.9.2-10 [160 kB] Get:9 http://mirror.bm.debian.org/debian/ jessie/main libstdc++6 amd64 4.9.2-10 [273 kB] Get:10 http://mirror.bm.debian.org/debian/ jessie/main libgfortran3 amd64 4.9.2-10 [255 kB] Get:11 http://mirror.bm.debian.org/debian/ jessie/main libobjc4 amd64 4.9.2-10 [112 kB] Get:12 http://mirror.bm.debian.org/debian/ jessie/main libisl10 amd64 0.12.2-2 [440 kB] Get:13 http://mirror.bm.debian.org/debian/ jessie/main libcloog-isl4 amd64 0.18.2-1+b2 [61.8 kB] Get:14 http://mirror.bm.debian.org/debian/ jessie/main libmpfr4 amd64 3.1.2-2 [527 kB] Get:15 http://mirror.bm.debian.org/debian/ jessie/main libmpc3 amd64 1.0.2-1 [39.3 kB] Get:16 http://mirror.bm.debian.org/debian/ jessie/main cpp-4.9 amd64 4.9.2-10 [5169 kB] Get:17 http://mirror.bm.debian.org/debian/ jessie/main cpp amd64 4:4.9.2-2 [17.3 kB] Get:18 http://mirror.bm.debian.org/debian/ jessie/main libtinfo5 amd64 5.9+20140913-1+deb8u2 [282 kB] Get:19 http://mirror.bm.debian.org/debian/ jessie/main libncursesw5 amd64 5.9+20140913-1+deb8u2 [123 kB] Get:20 http://mirror.bm.debian.org/debian/ jessie/main ncurses-bin amd64 5.9+20140913-1+deb8u2 [347 kB] Get:21 http://mirror.bm.debian.org/debian/ jessie/main libncurses5-dev amd64 5.9+20140913-1+deb8u2 [175 kB] Get:22 http://mirror.bm.debian.org/debian/ jessie/main libncurses5 amd64 5.9+20140913-1+deb8u2 [96.6 kB] Get:23 http://mirror.bm.debian.org/debian/ jessie/main libtinfo-dev amd64 5.9+20140913-1+deb8u2 [77.2 kB] Get:24 http://mirror.bm.debian.org/debian/ jessie/main binutils amd64 2.25-5+deb8u1 [3496 kB] Get:25 http://mirror.bm.debian.org/debian/ jessie/main libatomic1 amd64 4.9.2-10 [8992 B] Get:26 http://mirror.bm.debian.org/debian/ jessie/main libasan1 amd64 4.9.2-10 [195 kB] Get:27 http://mirror.bm.debian.org/debian/ jessie/main liblsan0 amd64 4.9.2-10 [92.8 kB] Get:28 http://mirror.bm.debian.org/debian/ jessie/main libtsan0 amd64 4.9.2-10 [212 kB] Get:29 http://mirror.bm.debian.org/debian/ jessie/main libubsan0 amd64 4.9.2-10 [82.4 kB] Get:30 http://mirror.bm.debian.org/debian/ jessie/main libcilkrts5 amd64 4.9.2-10 [40.1 kB] Get:31 http://mirror.bm.debian.org/debian/ jessie/main libquadmath0 amd64 4.9.2-10 [129 kB] Get:32 http://mirror.bm.debian.org/debian/ jessie/main libgcc-4.9-dev amd64 4.9.2-10 [2066 kB] Get:33 http://mirror.bm.debian.org/debian/ jessie/main gcc-4.9 amd64 4.9.2-10 [5352 kB] Get:34 http://mirror.bm.debian.org/debian/ jessie/main gcc amd64 4:4.9.2-2 [5136 B] Get:35 http://mirror.bm.debian.org/debian/ jessie/main libgfortran-4.9-dev amd64 4.9.2-10 [281 kB] Get:36 http://mirror.bm.debian.org/debian/ jessie/main gfortran-4.9 amd64 4.9.2-10 [5465 kB] Get:37 http://mirror.bm.debian.org/debian/ jessie/main gfortran amd64 4:4.9.2-2 [1292 B] Get:38 http://mirror.bm.debian.org/debian/ jessie/main libstdc++-4.9-dev amd64 4.9.2-10 [1121 kB] Get:39 http://mirror.bm.debian.org/debian/ jessie/main g++-4.9 amd64 4.9.2-10 [21.4 MB] Get:40 http://mirror.bm.debian.org/debian/ jessie/main g++ amd64 4:4.9.2-2 [1530 B] Get:41 http://mirror.bm.debian.org/debian/ jessie/main libgcc1 amd64 1:4.9.2-10 [39.5 kB] Get:42 http://mirror.bm.debian.org/debian/ jessie/main zlib1g-dev amd64 1:1.2.8.dfsg-2+b1 [206 kB] Get:43 http://mirror.bm.debian.org/debian/ jessie/main zlib1g amd64 1:1.2.8.dfsg-2+b1 [88.8 kB] Get:44 http://mirror.bm.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:45 http://mirror.bm.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:46 http://mirror.bm.debian.org/debian/ jessie/main libpng12-dev amd64 1.2.50-2+deb8u3 [248 kB] Get:47 http://mirror.bm.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:48 http://mirror.bm.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:49 http://mirror.bm.debian.org/debian/ jessie/main libpcre3-dev amd64 2:8.35-3.3+deb8u4 [441 kB] Get:50 http://mirror.bm.debian.org/debian/ jessie/main libpcrecpp0 amd64 2:8.35-3.3+deb8u4 [142 kB] Get:51 http://mirror.bm.debian.org/debian/ jessie/main libpcre3 amd64 2:8.35-3.3+deb8u4 [322 kB] Get:52 http://mirror.bm.debian.org/debian/ jessie/main libselinux1 amd64 2.3-2 [89.8 kB] Get:53 http://mirror.bm.debian.org/debian/ jessie/main ttf-dejavu-core all 2.34-1 [30.7 kB] Get:54 http://mirror.bm.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:55 http://mirror.bm.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:56 http://mirror.bm.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:57 http://mirror.bm.debian.org/debian/ jessie/main fontconfig amd64 2.11.0-6.3+deb8u1 [403 kB] Get:58 http://mirror.bm.debian.org/debian/ jessie/main dpkg amd64 1.17.27 [2994 kB] Get:59 http://mirror.bm.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:60 http://mirror.bm.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:61 http://mirror.bm.debian.org/debian/ jessie/main liblzma5 amd64 5.1.1alpha+20120614-2+b3 [194 kB] Get:62 http://mirror.bm.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u4 [221 kB] Get:63 http://mirror.bm.debian.org/debian/ jessie/main libvpx1 amd64 1.3.0-3 [599 kB] Get:64 http://mirror.bm.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:65 http://mirror.bm.debian.org/debian/ jessie/main libx11-doc all 2:1.6.2-3+deb8u1 [2025 kB] Get:66 http://mirror.bm.debian.org/debian/ jessie/main libxau-dev amd64 1:1.0.8-1 [23.6 kB] Get:67 http://mirror.bm.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:68 http://mirror.bm.debian.org/debian/ jessie/main xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:69 http://mirror.bm.debian.org/debian/ jessie/main x11proto-core-dev all 7.0.26-1 [729 kB] Get:70 http://mirror.bm.debian.org/debian/ jessie/main libxdmcp-dev amd64 1:1.1.1-1+b1 [40.2 kB] Get:71 http://mirror.bm.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:72 http://mirror.bm.debian.org/debian/ jessie/main x11proto-input-dev all 2.3.1-1 [157 kB] Get:73 http://mirror.bm.debian.org/debian/ jessie/main xtrans-dev all 1.3.4-1 [99.3 kB] Get:74 http://mirror.bm.debian.org/debian/ jessie/main libxcb1-dev amd64 1.10-3+b1 [83.8 kB] Get:75 http://mirror.bm.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:76 http://mirror.bm.debian.org/debian/ jessie/main libpthread-stubs0-dev amd64 0.3-4 [3866 B] Get:77 http://mirror.bm.debian.org/debian/ jessie/main libx11-dev amd64 2:1.6.2-3+deb8u1 [799 kB] Get:78 http://mirror.bm.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:79 http://mirror.bm.debian.org/debian/ jessie/main libxpm4 amd64 1:3.5.12-0+deb8u1 [49.2 kB] Get:80 http://mirror.bm.debian.org/debian/ jessie/main libgd3 amd64 2.1.0-5+deb8u11 [148 kB] Get:81 http://mirror.bm.debian.org/debian/ jessie/main proj-data amd64 4.8.0-5 [2085 kB] Get:82 http://mirror.bm.debian.org/debian/ jessie/main libproj0 amd64 4.8.0-5 [144 kB] Get:83 http://mirror.bm.debian.org/debian/ jessie/main libterm-readkey-perl amd64 2.32-1+b1 [28.0 kB] Get:84 http://mirror.bm.debian.org/debian/ jessie/main libgsl0ldbl amd64 1.16+dfsg-2 [819 kB] Get:85 http://mirror.bm.debian.org/debian/ jessie/main libhdf4-0-alt amd64 4.2.10-3 [271 kB] Get:86 http://mirror.bm.debian.org/debian/ jessie/main pdl amd64 1:2.007-4 [3941 kB] Get:87 http://mirror.bm.debian.org/debian/ jessie/main libpython2.7 amd64 2.7.9-2+deb8u1 [1081 kB] Get:88 http://mirror.bm.debian.org/debian/ jessie/main python2.7 amd64 2.7.9-2+deb8u1 [252 kB] Get:89 http://mirror.bm.debian.org/debian/ jessie/main python2.7-minimal amd64 2.7.9-2+deb8u1 [1401 kB] Get:90 http://mirror.bm.debian.org/debian/ jessie/main libpython2.7-minimal amd64 2.7.9-2+deb8u1 [378 kB] Get:91 http://mirror.bm.debian.org/debian/ jessie/main libdb5.3 amd64 5.3.28-9+deb8u1 [680 kB] Get:92 http://mirror.bm.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:93 http://mirror.bm.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:94 http://mirror.bm.debian.org/debian/ jessie/main libbz2-dev amd64 1.0.6-7+b3 [29.0 kB] Get:95 http://mirror.bm.debian.org/debian/ jessie/main bzip2 amd64 1.0.6-7+b3 [46.9 kB] Get:96 http://mirror.bm.debian.org/debian/ jessie/main libbz2-1.0 amd64 1.0.6-7+b3 [43.5 kB] Get:97 http://mirror.bm.debian.org/debian/ jessie/main libreadline-dev amd64 6.3-8+b3 [1002 B] Get:98 http://mirror.bm.debian.org/debian/ jessie/main libreadline6-dev amd64 6.3-8+b3 [124 kB] Get:99 http://mirror.bm.debian.org/debian/ jessie/main readline-common all 6.3-8 [57.7 kB] Get:100 http://mirror.bm.debian.org/debian/ jessie/main libreadline6 amd64 6.3-8+b3 [143 kB] Get:101 http://mirror.bm.debian.org/debian/ jessie/main sqlite3 amd64 3.8.7.1-1+deb8u2 [101 kB] Get:102 http://mirror.bm.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:103 http://mirror.bm.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u7 [1046 kB] Get:104 http://mirror.bm.debian.org/debian/ jessie/main libpython2.7-stdlib amd64 2.7.9-2+deb8u1 [1847 kB] Get:105 http://mirror.bm.debian.org/debian/ jessie/main libpython-stdlib amd64 2.7.9-1 [19.5 kB] Get:106 http://mirror.bm.debian.org/debian/ jessie/main python-minimal amd64 2.7.9-1 [40.3 kB] Get:107 http://mirror.bm.debian.org/debian/ jessie/main python amd64 2.7.9-1 [151 kB] Get:108 http://mirror.bm.debian.org/debian/ jessie/main libperl4-corelibs-perl all 0.003-1 [43.6 kB] Get:109 http://mirror.bm.debian.org/debian/ jessie/main ssake all 3.8.2-1 [41.9 kB] Get:110 http://mirror.bm.debian.org/debian/ jessie/main perl-doc all 5.20.2-3+deb8u9 [7347 kB] Get:111 http://mirror.bm.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u9 [2641 kB] Get:112 http://mirror.bm.debian.org/debian/ jessie/main libcommon-sense-perl amd64 3.73-2+b3 [23.7 kB] Get:113 http://mirror.bm.debian.org/debian/ jessie/main libio-socket-ip-perl all 0.32-1 [28.1 kB] Get:114 http://mirror.bm.debian.org/debian/ jessie/main libsocket-perl amd64 2.016-1 [37.2 kB] Get:115 http://mirror.bm.debian.org/debian/ jessie/main libapr1 amd64 1.5.1-3 [95.3 kB] Get:116 http://mirror.bm.debian.org/debian/ jessie/main libaprutil1-ldap amd64 1.5.4-1 [17.2 kB] Get:117 http://mirror.bm.debian.org/debian/ jessie/main libaprutil1-dbd-sqlite3 amd64 1.5.4-1 [19.1 kB] Get:118 http://mirror.bm.debian.org/debian/ jessie/main libaprutil1 amd64 1.5.4-1 [86.2 kB] Get:119 http://mirror.bm.debian.org/debian/ jessie/main apache2-utils amd64 2.4.10-10+deb8u11 [195 kB] Get:120 http://mirror.bm.debian.org/debian/ jessie/main libapache2-mod-perl2 amd64 2.0.9~1624218-2+deb8u2 [903 kB] Get:121 http://mirror.bm.debian.org/debian/ jessie/main libapache2-reload-perl all 0.12-3 [17.3 kB] Get:122 http://mirror.bm.debian.org/debian/ jessie/main apache2.2-common amd64 2.4.10-10+deb8u11 [125 kB] Get:123 http://mirror.bm.debian.org/debian/ jessie/main apache2-data all 2.4.10-10+deb8u11 [163 kB] Get:124 http://mirror.bm.debian.org/debian/ jessie/main apache2 amd64 2.4.10-10+deb8u11 [208 kB] Get:125 http://mirror.bm.debian.org/debian/ jessie/main apache2-mpm-worker amd64 2.4.10-10+deb8u11 [1500 B] Get:126 http://mirror.bm.debian.org/debian/ jessie/main apache2.2-bin amd64 2.4.10-10+deb8u11 [1692 B] Get:127 http://mirror.bm.debian.org/debian/ jessie/main apache2-bin amd64 2.4.10-10+deb8u11 [1038 kB] Get:128 http://mirror.bm.debian.org/debian/ jessie/main libperl5.20 amd64 5.20.2-3+deb8u9 [1352 B] Get:129 http://mirror.bm.debian.org/debian/ jessie/main libtext-charwidth-perl amd64 0.04-7+b3 [10.7 kB] Get:130 http://mirror.bm.debian.org/debian/ jessie/main libnet-dbus-perl amd64 1.0.0-2+b2 [193 kB] Get:131 http://mirror.bm.debian.org/debian/ jessie/main libpackage-stash-xs-perl amd64 0.28-2+b1 [18.8 kB] Get:132 http://mirror.bm.debian.org/debian/ jessie/main liblist-moreutils-perl amd64 0.33-2+b1 [44.4 kB] Get:133 http://mirror.bm.debian.org/debian/ jessie/main libclone-perl amd64 0.37-1+b1 [14.2 kB] Get:134 http://mirror.bm.debian.org/debian/ jessie/main libmath-random-mt-perl amd64 1.16-1+b2 [15.7 kB] Get:135 http://mirror.bm.debian.org/debian/ jessie/main libbit-vector-perl amd64 7.3-1+b2 [146 kB] Get:136 http://mirror.bm.debian.org/debian/ jessie/main libdate-calc-xs-perl amd64 6.3-2 [54.0 kB] Get:137 http://mirror.bm.debian.org/debian/ jessie/main libclass-load-perl all 0.22-1 [15.8 kB] Get:138 http://mirror.bm.debian.org/debian/ jessie/main libclass-load-xs-perl amd64 0.08-1+b1 [15.0 kB] Get:139 http://mirror.bm.debian.org/debian/ jessie/main libmath-tamuanova-perl amd64 1.0.2-2+b2 [14.3 kB] Get:140 http://mirror.bm.debian.org/debian/ jessie/main libsub-name-perl amd64 0.12-1 [12.1 kB] Get:141 http://mirror.bm.debian.org/debian/ jessie/main libio-pty-perl amd64 1:1.08-1+b4 [35.8 kB] Get:142 http://mirror.bm.debian.org/debian/ jessie/main libipc-sharelite-perl amd64 0.17-3+b2 [24.9 kB] Get:143 http://mirror.bm.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:144 http://mirror.bm.debian.org/debian/ jessie/main libdbd-sqlite3-perl amd64 1.44-1 [156 kB] Get:145 http://mirror.bm.debian.org/debian/ jessie/main libbsd-resource-perl amd64 1.2907-1+b2 [33.1 kB] Get:146 http://mirror.bm.debian.org/debian/ jessie/main perl-base amd64 5.20.2-3+deb8u9 [1226 kB] Get:147 http://mirror.bm.debian.org/debian/ jessie/main liblocale-gettext-perl amd64 1.05-8+b1 [19.0 kB] Get:148 http://mirror.bm.debian.org/debian/ jessie/main libbio-graphics-perl all 2.39-2 [606 kB] Get:149 http://mirror.bm.debian.org/debian/ jessie/main libanyevent-perl amd64 7.070-3 [404 kB] Get:150 http://mirror.bm.debian.org/debian/ jessie/main libanyevent-cachedns-perl all 0.08-1 [7040 B] Get:151 http://mirror.bm.debian.org/debian/ jessie/main libanyevent-http-perl all 2.21-1 [34.5 kB] Get:152 http://mirror.bm.debian.org/debian/ jessie/main libstring-approx-perl amd64 3.27-1+b2 [40.8 kB] Get:153 http://mirror.bm.debian.org/debian/ jessie/main libvm-ec2-perl all 1.28-1 [768 kB] Get:154 http://mirror.bm.debian.org/debian/ jessie/main gbrowse all 2.54+dfsg-3 [2316 kB] Get:155 http://mirror.bm.debian.org/debian/ jessie/main libgd-perl amd64 2.53-1+b1 [180 kB] Get:156 http://mirror.bm.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:157 http://mirror.bm.debian.org/debian/ jessie/main libterm-readline-gnu-perl amd64 1.24-2+b1 [99.1 kB] Get:158 http://mirror.bm.debian.org/debian/ jessie/main libsub-identify-perl amd64 0.08-1 [11.2 kB] Get:159 http://mirror.bm.debian.org/debian/ jessie/main libbio-scf-perl amd64 1.03-2+b1 [21.3 kB] Get:160 http://mirror.bm.debian.org/debian/ jessie/main libjson-xs-perl amd64 2.340-1+b2 [85.9 kB] Get:161 http://mirror.bm.debian.org/debian/ jessie/main libxml-libxslt-perl amd64 1.92-1+b1 [47.7 kB] Get:162 http://mirror.bm.debian.org/debian/ jessie/main libalgorithm-diff-xs-perl amd64 0.04-3+b1 [12.2 kB] Get:163 http://mirror.bm.debian.org/debian/ jessie/main libfile-fcntllock-perl amd64 0.22-1+b1 [36.4 kB] Get:164 http://mirror.bm.debian.org/debian/ jessie/main perl-tk amd64 1:804.032-3+b3 [2031 kB] Get:165 http://mirror.bm.debian.org/debian/ jessie/main libblas-common amd64 1.2.20110419-10 [8496 B] Get:166 http://mirror.bm.debian.org/debian/ jessie/main libatlas3-base amd64 3.10.2-7 [2725 kB] Get:167 http://mirror.bm.debian.org/debian/ jessie/main altree amd64 1.3.1-2+b1 [341 kB] Get:168 http://mirror.bm.debian.org/debian/ jessie/main libdbd-mysql-perl amd64 4.028-2+deb8u2 [119 kB] Get:169 http://mirror.bm.debian.org/debian/ jessie/main libyaml-syck-perl amd64 1.27-2+b2 [80.5 kB] Get:170 http://mirror.bm.debian.org/debian/ jessie/main libtext-iconv-perl amd64 1.7-5+b2 [16.2 kB] Get:171 http://mirror.bm.debian.org/debian/ jessie/main libai-fann-perl amd64 0.10-2+b1 [29.4 kB] Get:172 http://mirror.bm.debian.org/debian/ jessie/main libcrypt-ssleay-perl amd64 0.58-1+b2 [45.8 kB] Get:173 http://mirror.bm.debian.org/debian/ jessie/main libdbd-pg-perl amd64 3.4.2-1 [203 kB] Get:174 http://mirror.bm.debian.org/debian/ jessie/main libclass-c3-xs-perl amd64 0.13-2+b1 [15.2 kB] Get:175 http://mirror.bm.debian.org/debian/ jessie/main libconvert-binary-c-perl amd64 0.76-3+b2 [274 kB] Get:176 http://mirror.bm.debian.org/debian/ jessie/main libossp-uuid-perl amd64 1.6.2-1.5+b1 [30.2 kB] Get:177 http://mirror.bm.debian.org/debian/ jessie/main libopengl-perl amd64 0.6703+dfsg-1+b1 [319 kB] Get:178 http://mirror.bm.debian.org/debian/ jessie/main libparams-classify-perl amd64 0.013-4+b2 [24.1 kB] Get:179 http://mirror.bm.debian.org/debian/ jessie/main libperlio-gzip-perl amd64 0.18-3+b1 [17.9 kB] Get:180 http://mirror.bm.debian.org/debian/ jessie/main libunicode-map-perl amd64 0.112-11+b1 [146 kB] Get:181 http://mirror.bm.debian.org/debian/ jessie/main libace-perl amd64 1.92-3+b1 [310 kB] Get:182 http://mirror.bm.debian.org/debian/ jessie/main libvariable-magic-perl amd64 0.55-1 [42.5 kB] Get:183 http://mirror.bm.debian.org/debian/ jessie/main libfcgi-perl amd64 0.77-1+deb8u1 [39.0 kB] Get:184 http://mirror.bm.debian.org/debian/ jessie/main libxml-parser-perl amd64 2.41-3 [215 kB] Get:185 http://mirror.bm.debian.org/debian/ jessie/main libdbi-perl amd64 1.631-3+b1 [816 kB] Get:186 http://mirror.bm.debian.org/debian/ jessie/main libparams-util-perl amd64 1.07-2+b1 [23.5 kB] Get:187 http://mirror.bm.debian.org/debian/ jessie/main libdevel-stacktrace-perl all 1.3400-1 [23.9 kB] Get:188 http://mirror.bm.debian.org/debian/ jessie/main libmodule-runtime-perl all 0.014-1 [17.9 kB] Get:189 http://mirror.bm.debian.org/debian/ jessie/main libdist-checkconflicts-perl all 0.11-1 [10.8 kB] Get:190 http://mirror.bm.debian.org/debian/ jessie/main libmodule-runtime-conflicts-perl all 0.001-1 [6846 B] Get:191 http://mirror.bm.debian.org/debian/ jessie/main libmoose-perl amd64 2.1213-1 [880 kB] Get:192 http://mirror.bm.debian.org/debian/ jessie/main libxml-libxml-perl amd64 2.0116+dfsg-1+deb8u2 [365 kB] Get:193 http://mirror.bm.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u9 [2553 kB] Get:194 http://mirror.bm.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:195 http://mirror.bm.debian.org/debian/ jessie/main iproute all 1:3.16.0-2 [15.5 kB] Get:196 http://mirror.bm.debian.org/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB] Get:197 http://mirror.bm.debian.org/debian/ jessie/main startpar amd64 0.59-3 [21.8 kB] Get:198 http://mirror.bm.debian.org/debian/ jessie/main sysvinit-utils amd64 2.88dsf-59 [84.4 kB] Get:199 http://mirror.bm.debian.org/debian/ jessie/main base-files amd64 8+deb8u10 [78.2 kB] Get:200 http://mirror.bm.debian.org/debian/ jessie/main sysv-rc all 2.88dsf-59 [82.8 kB] Get:201 http://mirror.bm.debian.org/debian/ jessie/main libaudit-common all 1:2.4-1 [13.5 kB] Get:202 http://mirror.bm.debian.org/debian/ jessie/main libaudit1 amd64 1:2.4-1+b1 [44.7 kB] Get:203 http://mirror.bm.debian.org/debian/ jessie/main libpam0g amd64 1.1.8-3.1+deb8u2+b1 [126 kB] Get:204 http://mirror.bm.debian.org/debian/ jessie/main libsemanage-common all 2.3-1 [24.6 kB] Get:205 http://mirror.bm.debian.org/debian/ jessie/main libsemanage1 amd64 2.3-1+b1 [90.2 kB] Get:206 http://mirror.bm.debian.org/debian/ jessie/main libsepol1 amd64 2.3-2 [127 kB] Get:207 http://mirror.bm.debian.org/debian/ jessie/main libustr-1.0-1 amd64 1.0.4-3+b2 [79.6 kB] Get:208 http://mirror.bm.debian.org/debian/ jessie/main libpam-modules-bin amd64 1.1.8-3.1+deb8u2+b1 [104 kB] Get:209 http://mirror.bm.debian.org/debian/ jessie/main libpam-modules amd64 1.1.8-3.1+deb8u2+b1 [307 kB] Get:210 http://mirror.bm.debian.org/debian/ jessie/main sensible-utils all 0.0.9 [11.3 kB] Get:211 http://mirror.bm.debian.org/debian/ jessie/main debianutils amd64 4.4+b1 [99.1 kB] Get:212 http://mirror.bm.debian.org/debian/ jessie/main passwd amd64 1:4.2-3+deb8u4 [971 kB] Get:213 http://mirror.bm.debian.org/debian/ jessie/main libuuid1 amd64 2.25.2-6 [64.7 kB] Get:214 http://mirror.bm.debian.org/debian/ jessie/main libblkid1 amd64 2.25.2-6 [156 kB] Get:215 http://mirror.bm.debian.org/debian/ jessie/main libmount1 amd64 2.25.2-6 [164 kB] Get:216 http://mirror.bm.debian.org/debian/ jessie/main libsmartcols1 amd64 2.25.2-6 [110 kB] Get:217 http://mirror.bm.debian.org/debian/ jessie/main mount amd64 2.25.2-6 [168 kB] Get:218 http://mirror.bm.debian.org/debian/ jessie/main lsb-base all 4.1+Debian13+nmu1 [26.7 kB] Get:219 http://mirror.bm.debian.org/debian/ jessie/main coreutils amd64 8.23-4 [2727 kB] Get:220 http://mirror.bm.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:221 http://mirror.bm.debian.org/debian/ jessie/main ifupdown amd64 0.7.53.1 [67.2 kB] Get:222 http://mirror.bm.debian.org/debian/ jessie/main initscripts amd64 2.88dsf-59 [87.2 kB] Get:223 http://mirror.bm.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:224 http://mirror.bm.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:225 http://mirror.bm.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:226 http://mirror.bm.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:227 http://mirror.bm.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:228 http://mirror.bm.debian.org/debian/ jessie/main libsasl2-modules amd64 2.1.26.dfsg1-13+deb8u1 [101 kB] Get:229 http://mirror.bm.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:230 http://mirror.bm.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:231 http://mirror.bm.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u3 [218 kB] Get:232 http://mirror.bm.debian.org/debian/ jessie/main libprocps3 amd64 2:3.3.9-9 [56.3 kB] Get:233 http://mirror.bm.debian.org/debian/ jessie/main procps amd64 2:3.3.9-9 [236 kB] Get:234 http://mirror.bm.debian.org/debian/ jessie/main liblua5.1-0 amd64 5.1.5-7.1 [108 kB] Get:235 http://mirror.bm.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u5 [803 kB] Get:236 http://mirror.bm.debian.org/debian/ jessie/main libdevel-symdump-perl all 2.12-1 [17.1 kB] Get:237 http://mirror.bm.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:238 http://mirror.bm.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:239 http://mirror.bm.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:240 http://mirror.bm.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:241 http://mirror.bm.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:242 http://mirror.bm.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:243 http://mirror.bm.debian.org/debian/ jessie/main libsoap-lite-perl all 1.11-1 [272 kB] Get:244 http://mirror.bm.debian.org/debian/ jessie/main libio-sessiondata-perl all 1.03-1 [5782 B] Get:245 http://mirror.bm.debian.org/debian/ jessie/main libclass-inspector-perl all 1.28-1 [20.8 kB] Get:246 http://mirror.bm.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:247 http://mirror.bm.debian.org/debian/ jessie/main libconvert-binhex-perl all 1.123-2 [30.2 kB] Get:248 http://mirror.bm.debian.org/debian/ jessie/main libnet-smtp-ssl-perl all 1.01-3 [5996 B] Get:249 http://mirror.bm.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] Get:250 http://mirror.bm.debian.org/debian/ jessie/main libmailtools-perl all 2.13-1 [96.6 kB] Get:251 http://mirror.bm.debian.org/debian/ jessie/main libmime-tools-perl all 5.505-1 [226 kB] Get:252 http://mirror.bm.debian.org/debian/ jessie/main libossp-uuid16 amd64 1.6.2-1.5+b1 [38.0 kB] Get:253 http://mirror.bm.debian.org/debian/ jessie/main libtask-weaken-perl all 1.04-1 [7990 B] Get:254 http://mirror.bm.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u7 [665 kB] Get:255 http://mirror.bm.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:256 http://mirror.bm.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:257 http://mirror.bm.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:258 http://mirror.bm.debian.org/debian/ jessie/main libdbus-1-3 amd64 1.8.22-0+deb8u1 [170 kB] Get:259 http://mirror.bm.debian.org/debian/ jessie/main libxml-twig-perl all 1:3.48-1 [178 kB] Get:260 http://mirror.bm.debian.org/debian/ jessie/main libdate-calc-perl all 6.3-2 [194 kB] Get:261 http://mirror.bm.debian.org/debian/ jessie/main libsub-install-perl all 0.928-1 [11.4 kB] Get:262 http://mirror.bm.debian.org/debian/ jessie/main libdata-optlist-perl all 0.109-1 [10.6 kB] Get:263 http://mirror.bm.debian.org/debian/ jessie/main libtry-tiny-perl all 0.22-1 [19.6 kB] Get:264 http://mirror.bm.debian.org/debian/ jessie/main libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:265 http://mirror.bm.debian.org/debian/ jessie/main libsub-exporter-progressive-perl all 0.001011-1 [7748 B] Get:266 http://mirror.bm.debian.org/debian/ jessie/main libb-hooks-endofscope-perl all 0.13-1 [15.4 kB] Get:267 http://mirror.bm.debian.org/debian/ jessie/main libpackage-stash-perl all 0.37-1 [20.8 kB] Get:268 http://mirror.bm.debian.org/debian/ jessie/main libnamespace-clean-perl all 0.25-1 [15.4 kB] Get:269 http://mirror.bm.debian.org/debian/ jessie/main libblas-dev amd64 1.2.20110419-10 [163 kB] Get:270 http://mirror.bm.debian.org/debian/ jessie/main libblas3 amd64 1.2.20110419-10 [167 kB] Get:271 http://mirror.bm.debian.org/debian/ jessie/main libtamuanova-0.2 amd64 0.2-3 [8214 B] Get:272 http://mirror.bm.debian.org/debian/ jessie/main libgetopt-euclid-perl all 0.4.5-1 [47.3 kB] Get:273 http://mirror.bm.debian.org/debian/ jessie/main grinder all 0.5.3-3 [81.6 kB] Get:274 http://mirror.bm.debian.org/debian/ jessie/main libio-string-perl all 1.08-3 [12.3 kB] Get:275 http://mirror.bm.debian.org/debian/ jessie/main libdata-stag-perl all 0.13-1 [476 kB] Get:276 http://mirror.bm.debian.org/debian/ jessie/main bioperl all 1.6.924-1 [419 kB] Get:277 http://mirror.bm.debian.org/debian/ jessie/main libbio-perl-perl all 1.6.924-1 [4763 kB] Get:278 http://mirror.bm.debian.org/debian/ jessie/main libjson-perl all 2.61-1 [84.7 kB] Get:279 http://mirror.bm.debian.org/debian/ jessie/main libcgi-session-perl all 4.48-1+deb8u1 [119 kB] Get:280 http://mirror.bm.debian.org/debian/ jessie/main libstatistics-descriptive-perl all 3.0607-1 [41.4 kB] Get:281 http://mirror.bm.debian.org/debian/ jessie/main libjs-prototype all 1.7.1-3 [44.3 kB] Get:282 http://mirror.bm.debian.org/debian/ jessie/main librtmp1 amd64 2.4+20150115.gita107cef-1+deb8u1 [60.0 kB] Get:283 http://mirror.bm.debian.org/debian/ jessie/main libcomerr2 amd64 1.42.12-2+b1 [60.7 kB] Get:284 http://mirror.bm.debian.org/debian/ jessie/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB] Get:285 http://mirror.bm.debian.org/debian/ jessie/main libk5crypto3 amd64 1.12.1+dfsg-19+deb8u4 [116 kB] Get:286 http://mirror.bm.debian.org/debian/ jessie/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19+deb8u4 [152 kB] Get:287 http://mirror.bm.debian.org/debian/ jessie/main libkrb5-3 amd64 1.12.1+dfsg-19+deb8u4 [303 kB] Get:288 http://mirror.bm.debian.org/debian/ jessie/main libkrb5support0 amd64 1.12.1+dfsg-19+deb8u4 [59.4 kB] Get:289 http://mirror.bm.debian.org/debian/ jessie/main libidn11 amd64 1.29-1+deb8u2 [136 kB] Get:290 http://mirror.bm.debian.org/debian/ jessie/main libgpg-error0 amd64 1.17-3 [94.9 kB] Get:291 http://mirror.bm.debian.org/debian/ jessie/main libgcrypt20 amd64 1.6.3-2+deb8u4 [392 kB] Get:292 http://mirror.bm.debian.org/debian/ jessie/main libssh2-1 amd64 1.4.3-4.1+deb8u1 [125 kB] Get:293 http://mirror.bm.debian.org/debian/ jessie/main libcurl3-gnutls amd64 7.38.0-4+deb8u8 [252 kB] Get:294 http://mirror.bm.debian.org/debian/ jessie/main libstaden-read1 amd64 1.13.7-1 [260 kB] Get:295 http://mirror.bm.debian.org/debian/ jessie/main libxslt1.1 amd64 1.1.28-2+deb8u3 [232 kB] Get:296 http://mirror.bm.debian.org/debian/ jessie/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:297 http://mirror.bm.debian.org/debian/ jessie/main libalgorithm-diff-perl all 1.19.02-3 [51.7 kB] Get:298 http://mirror.bm.debian.org/debian/ jessie/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB] Get:299 http://mirror.bm.debian.org/debian/ jessie/main libxft2 amd64 2.3.2-1 [55.4 kB] Get:300 http://mirror.bm.debian.org/debian/ jessie/main mysql-common all 5.5.58-0+deb8u1 [78.6 kB] Get:301 http://mirror.bm.debian.org/debian/ jessie/main libmysqlclient18 amd64 5.5.58-0+deb8u1 [674 kB] Get:302 http://mirror.bm.debian.org/debian/ jessie/main libfann2 amd64 2.1.0~beta+dfsg-1 [67.2 kB] Get:303 http://mirror.bm.debian.org/debian/ jessie/main libpq5 amd64 9.4.15-0+deb8u1 [127 kB] Get:304 http://mirror.bm.debian.org/debian/ jessie/main libgl1-mesa-dri amd64 10.3.2-1+deb8u1 [3384 kB] Get:305 http://mirror.bm.debian.org/debian/ jessie/main libgl1-mesa-glx amd64 10.3.2-1+deb8u1 [180 kB] Get:306 http://mirror.bm.debian.org/debian/ jessie/main libglapi-mesa amd64 10.3.2-1+deb8u1 [53.3 kB] Get:307 http://mirror.bm.debian.org/debian/ jessie/main libxcb-dri2-0 amd64 1.10-3+b1 [12.9 kB] Get:308 http://mirror.bm.debian.org/debian/ jessie/main libxcb-dri3-0 amd64 1.10-3+b1 [11.1 kB] Get:309 http://mirror.bm.debian.org/debian/ jessie/main libxcb-present0 amd64 1.10-3+b1 [11.1 kB] Get:310 http://mirror.bm.debian.org/debian/ jessie/main libxcb-sync1 amd64 1.10-3+b1 [14.4 kB] Get:311 http://mirror.bm.debian.org/debian/ jessie/main libxshmfence1 amd64 1.1-4 [6736 B] Get:312 http://mirror.bm.debian.org/debian/ jessie/main libudev1 amd64 215-17+deb8u7 [57.8 kB] Get:313 http://mirror.bm.debian.org/debian/ jessie/main libdrm2 amd64 2.4.58-2 [29.9 kB] Get:314 http://mirror.bm.debian.org/debian/ jessie/main libpciaccess0 amd64 0.13.2-3+b1 [47.6 kB] Get:315 http://mirror.bm.debian.org/debian/ jessie/main libdrm-intel1 amd64 2.4.58-2 [64.9 kB] Get:316 http://mirror.bm.debian.org/debian/ jessie/main libdrm-nouveau2 amd64 2.4.58-2 [21.6 kB] Get:317 http://mirror.bm.debian.org/debian/ jessie/main libelf1 amd64 0.159-4.2 [160 kB] Get:318 http://mirror.bm.debian.org/debian/ jessie/main libbsd0 amd64 0.7.0-2 [67.9 kB] Get:319 http://mirror.bm.debian.org/debian/ jessie/main libedit2 amd64 3.1-20140620-2 [85.1 kB] Get:320 http://mirror.bm.debian.org/debian/ jessie/main libllvm3.5 amd64 1:3.5-10 [7607 kB] Get:321 http://mirror.bm.debian.org/debian/ jessie/main libdrm-radeon1 amd64 2.4.58-2 [31.1 kB] Get:322 http://mirror.bm.debian.org/debian/ jessie/main libx11-xcb1 amd64 2:1.6.2-3+deb8u1 [163 kB] Get:323 http://mirror.bm.debian.org/debian/ jessie/main libxcb-glx0 amd64 1.10-3+b1 [27.4 kB] Get:324 http://mirror.bm.debian.org/debian/ jessie/main libxfixes3 amd64 1:5.0.1-2+deb8u1 [21.1 kB] Get:325 http://mirror.bm.debian.org/debian/ jessie/main libxdamage1 amd64 1:1.1.4-2+b1 [14.7 kB] Get:326 http://mirror.bm.debian.org/debian/ jessie/main libxext6 amd64 2:1.3.3-1 [52.7 kB] Get:327 http://mirror.bm.debian.org/debian/ jessie/main libxxf86vm1 amd64 1:1.1.3-1+b1 [19.6 kB] Get:328 http://mirror.bm.debian.org/debian/ jessie/main libxi6 amd64 2:1.7.4-1+deb8u1 [79.9 kB] Get:329 http://mirror.bm.debian.org/debian/ jessie/main freeglut3 amd64 2.8.1-2 [124 kB] Get:330 http://mirror.bm.debian.org/debian/ jessie/main libglu1-mesa amd64 9.0.0-2 [163 kB] Get:331 http://mirror.bm.debian.org/debian/ jessie/main liberror-perl all 0.17-1.1 [22.4 kB] Get:332 http://mirror.bm.debian.org/debian/ jessie/main libcache-cache-perl all 1.07-2 [76.2 kB] Get:333 http://mirror.bm.debian.org/debian/ jessie/main libdevel-globaldestruction-perl all 0.13-1 [8676 B] Get:334 http://mirror.bm.debian.org/debian/ jessie/main libsub-exporter-perl all 0.986-1 [49.9 kB] Get:335 http://mirror.bm.debian.org/debian/ jessie/main libeval-closure-perl all 0.11-1 [11.6 kB] Get:336 http://mirror.bm.debian.org/debian/ jessie/main libalgorithm-c3-perl all 0.09-1 [11.9 kB] Get:337 http://mirror.bm.debian.org/debian/ jessie/main libclass-c3-perl all 0.26-1 [22.9 kB] Get:338 http://mirror.bm.debian.org/debian/ jessie/main libmro-compat-perl all 0.12-1 [13.2 kB] Get:339 http://mirror.bm.debian.org/debian/ jessie/main debconf all 1.5.56+deb8u1 [167 kB] Get:340 http://mirror.bm.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] Get:341 http://mirror.bm.debian.org/debian/ jessie/main fonts-liberation all 1.07.4-1 [835 kB] Get:342 http://mirror.bm.debian.org/debian/ jessie/main gnustep-common amd64 2.6.6-3 [119 kB] Get:343 http://mirror.bm.debian.org/debian/ jessie/main gnustep-base-common all 1.24.7-1 [244 kB] Get:344 http://mirror.bm.debian.org/debian/ jessie/main libavahi-common-data amd64 0.6.31-5 [98.6 kB] Get:345 http://mirror.bm.debian.org/debian/ jessie/main libavahi-common3 amd64 0.6.31-5 [51.1 kB] Get:346 http://mirror.bm.debian.org/debian/ jessie/main libavahi-client3 amd64 0.6.31-5 [54.4 kB] Get:347 http://mirror.bm.debian.org/debian/ jessie/main libicu52 amd64 52.1-8+deb8u6 [6804 kB] Get:348 http://mirror.bm.debian.org/debian/ jessie/main libgnustep-base1.24 amd64 1.24.7-1 [1254 kB] Get:349 http://mirror.bm.debian.org/debian/ jessie/main gnustep-base-runtime amd64 1.24.7-1 [189 kB] Get:350 http://mirror.bm.debian.org/debian/ jessie/main mknfonts.tool amd64 0.5-11+b4 [14.3 kB] Get:351 http://mirror.bm.debian.org/debian/ jessie/main fonts-freefont-ttf all 20120503-4 [4262 kB] Get:352 http://mirror.bm.debian.org/debian/ jessie/main gnustep-gui-common all 0.24.0-3 [764 kB] Get:353 http://mirror.bm.debian.org/debian/ jessie/main libao-common amd64 1.1.0-3 [11.1 kB] Get:354 http://mirror.bm.debian.org/debian/ jessie/main libao4 amd64 1.1.0-3 [36.7 kB] Get:355 http://mirror.bm.debian.org/debian/ jessie/main emacsen-common all 2.0.8 [21.2 kB] Get:356 http://mirror.bm.debian.org/debian/ jessie/main dictionaries-common all 1.23.17 [249 kB] Get:357 http://mirror.bm.debian.org/debian/ jessie/main libaspell15 amd64 0.60.7~20110707-1.3 [359 kB] Get:358 http://mirror.bm.debian.org/debian/ jessie/main aspell amd64 0.60.7~20110707-1.3 [230 kB] Get:359 http://mirror.bm.debian.org/debian/ jessie/main libcupsfilters1 amd64 1.0.61-5+deb8u3 [106 kB] Get:360 http://mirror.bm.debian.org/debian/ jessie/main libcupsimage2 amd64 1.7.5-11+deb8u2 [117 kB] Get:361 http://mirror.bm.debian.org/debian/ jessie/main libcups2 amd64 1.7.5-11+deb8u2 [284 kB] Get:362 http://mirror.bm.debian.org/debian/ jessie/main libasound2 amd64 1.0.28-1 [374 kB] Get:363 http://mirror.bm.debian.org/debian/ jessie/main libasound2-data all 1.0.28-1 [64.8 kB] Get:364 http://mirror.bm.debian.org/debian/ jessie/main libflite1 amd64 1.4-release-12 [13.1 MB] Get:365 http://mirror.bm.debian.org/debian/ jessie/main libgif4 amd64 4.1.6-11+deb8u1 [40.0 kB] Get:366 http://mirror.bm.debian.org/debian/ jessie/main libfftw3-3 amd64 3.3.4-2 [18.7 kB] Get:367 http://mirror.bm.debian.org/debian/ jessie/main libfftw3-long3 amd64 3.3.4-2 [312 kB] Get:368 http://mirror.bm.debian.org/debian/ jessie/main libfftw3-single3 amd64 3.3.4-2 [754 kB] Get:369 http://mirror.bm.debian.org/debian/ jessie/main libfftw3-double3 amd64 3.3.4-2 [722 kB] Get:370 http://mirror.bm.debian.org/debian/ jessie/main liblcms2-2 amd64 2.6-3+deb8u1 [141 kB] Get:371 http://mirror.bm.debian.org/debian/ jessie/main libgirepository-1.0-1 amd64 1.42.0-2.2 [95.7 kB] Get:372 http://mirror.bm.debian.org/debian/ jessie/main gir1.2-glib-2.0 amd64 1.42.0-2.2 [141 kB] Get:373 http://mirror.bm.debian.org/debian/ jessie/main python-gi amd64 3.14.0-1 [494 kB] Get:374 http://mirror.bm.debian.org/debian/ jessie/main libglib2.0-0 amd64 2.42.1-1+b1 [2401 kB] Get:375 http://mirror.bm.debian.org/debian/ jessie/main liblqr-1-0 amd64 0.4.2-2 [24.6 kB] Get:376 http://mirror.bm.debian.org/debian/ jessie/main libltdl7 amd64 2.4.2-1.11+b1 [45.4 kB] Get:377 http://mirror.bm.debian.org/debian/ jessie/main imagemagick-common all 8:6.8.9.9-5+deb8u11 [153 kB] Get:378 http://mirror.bm.debian.org/debian/ jessie/main libmagickcore-6.q16-2 amd64 8:6.8.9.9-5+deb8u11 [1695 kB] Get:379 http://mirror.bm.debian.org/debian/ jessie/main libgnustep-gui0.24 amd64 0.24.0-3 [1372 kB] Get:380 http://mirror.bm.debian.org/debian/ jessie/main libogg0 amd64 1.3.2-1 [19.9 kB] Get:381 http://mirror.bm.debian.org/debian/ jessie/main libflac8 amd64 1.3.0-3 [89.3 kB] Get:382 http://mirror.bm.debian.org/debian/ jessie/main libvorbisenc2 amd64 1.3.4-2 [77.9 kB] Get:383 http://mirror.bm.debian.org/debian/ jessie/main libvorbis0a amd64 1.3.4-2 [92.9 kB] Get:384 http://mirror.bm.debian.org/debian/ jessie/main libsndfile1 amd64 1.0.25-9.1+deb8u1 [215 kB] Get:385 http://mirror.bm.debian.org/debian/ jessie/main gnustep-gui-runtime amd64 0.24.0-3 [154 kB] Get:386 http://mirror.bm.debian.org/debian/ jessie/main adun.app amd64 0.81-6+b1 [1203 kB] Get:387 http://mirror.bm.debian.org/debian/ jessie/main gnustep-back-common amd64 0.24.0-4 [103 kB] Get:388 http://mirror.bm.debian.org/debian/ jessie/main libpixman-1-0 amd64 0.32.6-3 [507 kB] Get:389 http://mirror.bm.debian.org/debian/ jessie/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB] Get:390 http://mirror.bm.debian.org/debian/ jessie/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB] Get:391 http://mirror.bm.debian.org/debian/ jessie/main libcairo2 amd64 1.14.0-2.1+deb8u2 [742 kB] Get:392 http://mirror.bm.debian.org/debian/ jessie/main libxcursor1 amd64 1:1.1.14-1+b1 [35.1 kB] Get:393 http://mirror.bm.debian.org/debian/ jessie/main libice-dev amd64 2:1.0.9-1+b1 [66.3 kB] Get:394 http://mirror.bm.debian.org/debian/ jessie/main x11-common all 1:7.7+7 [287 kB] Get:395 http://mirror.bm.debian.org/debian/ jessie/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB] Get:396 http://mirror.bm.debian.org/debian/ jessie/main libsm-dev amd64 2:1.2.2-1+b1 [35.8 kB] Get:397 http://mirror.bm.debian.org/debian/ jessie/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB] Get:398 http://mirror.bm.debian.org/debian/ jessie/main libxt-dev amd64 1:1.1.4-1+b1 [421 kB] Get:399 http://mirror.bm.debian.org/debian/ jessie/main libxt6 amd64 1:1.1.4-1+b1 [186 kB] Get:400 http://mirror.bm.debian.org/debian/ jessie/main libxmu6 amd64 2:1.1.2-1 [58.6 kB] Get:401 http://mirror.bm.debian.org/debian/ jessie/main gnustep-back0.24-cairo amd64 0.24.0-4 [244 kB] Get:402 http://mirror.bm.debian.org/debian/ jessie/main gnustep-back0.24 all 0.24.0-4 [79.4 kB] Get:403 http://mirror.bm.debian.org/debian/ jessie/main libcdt5 amd64 2.38.0-7 [62.7 kB] Get:404 http://mirror.bm.debian.org/debian/ jessie/main libcgraph6 amd64 2.38.0-7 [85.2 kB] Get:405 http://mirror.bm.debian.org/debian/ jessie/main libgraphite2-3 amd64 1.3.10-1~deb8u1 [85.4 kB] Get:406 http://mirror.bm.debian.org/debian/ jessie/main libharfbuzz0b amd64 0.9.35-2 [485 kB] Get:407 http://mirror.bm.debian.org/debian/ jessie/main libpango1.0-0 amd64 1.36.8-3 [183 kB] Get:408 http://mirror.bm.debian.org/debian/ jessie/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB] Get:409 http://mirror.bm.debian.org/debian/ jessie/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB] Get:410 http://mirror.bm.debian.org/debian/ jessie/main libpangox-1.0-0 amd64 0.0.2-5 [42.0 kB] Get:411 http://mirror.bm.debian.org/debian/ jessie/main libpangoxft-1.0-0 amd64 1.36.8-3 [195 kB] Get:412 http://mirror.bm.debian.org/debian/ jessie/main libthai-data all 0.1.21-1 [159 kB] Get:413 http://mirror.bm.debian.org/debian/ jessie/main libdatrie1 amd64 0.2.8-1 [32.6 kB] Get:414 http://mirror.bm.debian.org/debian/ jessie/main libthai0 amd64 0.1.21-1 [46.1 kB] Get:415 http://mirror.bm.debian.org/debian/ jessie/main libpango-1.0-0 amd64 1.36.8-3 [291 kB] Get:416 http://mirror.bm.debian.org/debian/ jessie/main libpathplan4 amd64 2.38.0-7 [66.0 kB] Get:417 http://mirror.bm.debian.org/debian/ jessie/main libxdot4 amd64 2.38.0-7 [58.7 kB] Get:418 http://mirror.bm.debian.org/debian/ jessie/main graphviz amd64 2.38.0-7 [717 kB] Get:419 http://mirror.bm.debian.org/debian/ jessie/main libgvc6 amd64 2.38.0-7 [637 kB] Get:420 http://mirror.bm.debian.org/debian/ jessie/main libgvpr2 amd64 2.38.0-7 [212 kB] Get:421 http://mirror.bm.debian.org/debian/ jessie/main libxaw7 amd64 2:1.0.12-2+b1 [199 kB] Get:422 http://mirror.bm.debian.org/debian/ jessie/main libnuma1 amd64 2.0.10-1 [32.5 kB] Get:423 http://mirror.bm.debian.org/debian/ jessie/main libhwloc5 amd64 1.10.0-3 [86.9 kB] Get:424 http://mirror.bm.debian.org/debian/ jessie/main libint1 amd64 1.1.5-1 [1110 kB] Get:425 http://mirror.bm.debian.org/debian/ jessie/main openmpi-checkpoint amd64 1.6.5-9.1+deb8u1 [96.2 kB] Get:426 http://mirror.bm.debian.org/debian/ jessie/main openmpi-bin amd64 1.6.5-9.1+deb8u1 [154 kB] Get:427 http://mirror.bm.debian.org/debian/ jessie/main openmpi-common all 1.6.5-9.1+deb8u1 [110 kB] Get:428 http://mirror.bm.debian.org/debian/ jessie/main libcr0 amd64 0.8.5-2.2 [32.7 kB] Get:429 http://mirror.bm.debian.org/debian/ jessie/main blcr-util amd64 0.8.5-2.2 [40.5 kB] Get:430 http://mirror.bm.debian.org/debian/ jessie/main mpqc amd64 2.3.1-16 [88.1 kB] Get:431 http://mirror.bm.debian.org/debian/ jessie/main libsc7 amd64 2.3.1-16 [2383 kB] Get:432 http://mirror.bm.debian.org/debian/ jessie/main fftw2 amd64 2.1.5-1+b1 [290 kB] Get:433 http://mirror.bm.debian.org/debian/ jessie/main ampliconnoise amd64 1.29-2 [467 kB] Get:434 http://mirror.bm.debian.org/debian/ jessie/main apbs amd64 1.4-1 [211 kB] Get:435 http://mirror.bm.debian.org/debian/ jessie/main libibverbs1 amd64 1.1.8-1.1 [32.2 kB] Get:436 http://mirror.bm.debian.org/debian/ jessie/main libopenmpi1.6 amd64 1.6.5-9.1+deb8u1 [1455 kB] Get:437 http://mirror.bm.debian.org/debian/ jessie/main libsc-data all 2.3.1-16 [121 kB] Get:438 http://mirror.bm.debian.org/debian/ jessie/main mpi-default-bin amd64 1.0.2+nmu2 [3356 B] Get:439 http://mirror.bm.debian.org/debian/ jessie/main liblapack-dev amd64 3.5.0-4 [1884 kB] Get:440 http://mirror.bm.debian.org/debian/ jessie/main liblapack3 amd64 3.5.0-4 [1852 kB] Get:441 http://mirror.bm.debian.org/debian/ jessie/main mafft amd64 7.205-1 [775 kB] Get:442 http://mirror.bm.debian.org/debian/ jessie/main libmaloc1 amd64 0.2-3 [49.0 kB] Get:443 http://mirror.bm.debian.org/debian/ jessie/main libncbi6 amd64 6.1.20120620-8 [3769 kB] Get:444 http://mirror.bm.debian.org/debian/ jessie/main ncbi-data all 6.1.20120620-8 [3320 kB] Get:445 http://mirror.bm.debian.org/debian/ jessie/main libmotif-common all 2.3.4-6+deb8u1 [28.1 kB] Get:446 http://mirror.bm.debian.org/debian/ jessie/main libxm4 amd64 2.3.4-6+deb8u1 [1028 kB] Get:447 http://mirror.bm.debian.org/debian/ jessie/main ncbi-tools-x11 amd64 6.1.20120620-8 [1131 kB] Get:448 http://mirror.bm.debian.org/debian/ jessie/main njplot amd64 2.4-2+b1 [89.6 kB] Get:449 http://mirror.bm.debian.org/debian/ jessie/main libvibrant6b amd64 6.1.20120620-8 [1273 kB] Get:450 http://mirror.bm.debian.org/debian/ jessie/main bash amd64 4.3-11+deb8u1 [1172 kB] Get:451 http://mirror.bm.debian.org/debian/ jessie/main libsystemd0 amd64 215-17+deb8u7 [89.4 kB] Get:452 http://mirror.bm.debian.org/debian/ jessie/main bsdutils amd64 1:2.25.2-6 [94.0 kB] Get:453 http://mirror.bm.debian.org/debian/ jessie/main dash amd64 0.5.7-4+b1 [109 kB] Get:454 http://mirror.bm.debian.org/debian/ jessie/main diffutils amd64 1:3.3-1+b1 [267 kB] Get:455 http://mirror.bm.debian.org/debian/ jessie/main e2fslibs amd64 1.42.12-2+b1 [186 kB] Get:456 http://mirror.bm.debian.org/debian/ jessie/main e2fsprogs amd64 1.42.12-2+b1 [750 kB] Get:457 http://mirror.bm.debian.org/debian/ jessie/main findutils amd64 4.4.2-9+b1 [485 kB] Get:458 http://mirror.bm.debian.org/debian/ jessie/main grep amd64 2.20-4.1 [325 kB] Get:459 http://mirror.bm.debian.org/debian/ jessie/main gzip amd64 1.6-4 [111 kB] Get:460 http://mirror.bm.debian.org/debian/ jessie/main hostname amd64 3.15 [13.9 kB] Get:461 http://mirror.bm.debian.org/debian/ jessie/main tzdata-java all 2017c-0+deb8u1 [82.1 kB] Get:462 http://mirror.bm.debian.org/debian/ jessie/main tzdata all 2017c-0+deb8u1 [232 kB] Get:463 http://mirror.bm.debian.org/debian/ jessie/main util-linux amd64 2.25.2-6 [845 kB] Get:464 http://mirror.bm.debian.org/debian/ jessie/main libdevmapper1.02.1 amd64 2:1.02.90-2.2+deb8u1 [145 kB] Get:465 http://mirror.bm.debian.org/debian/ jessie/main dmsetup amd64 2:1.02.90-2.2+deb8u1 [69.1 kB] Get:466 http://mirror.bm.debian.org/debian/ jessie/main libcryptsetup4 amd64 2:1.6.6-5 [103 kB] Get:467 http://mirror.bm.debian.org/debian/ jessie/main libkmod2 amd64 18-3 [46.2 kB] Get:468 http://mirror.bm.debian.org/debian/ jessie/main libattr1 amd64 1:2.4.47-2 [18.3 kB] Get:469 http://mirror.bm.debian.org/debian/ jessie/main libacl1 amd64 2.2.52-2 [27.9 kB] Get:470 http://mirror.bm.debian.org/debian/ jessie/main udev amd64 215-17+deb8u7 [876 kB] Get:471 http://mirror.bm.debian.org/debian/ jessie/main acl amd64 2.2.52-2 [58.4 kB] Get:472 http://mirror.bm.debian.org/debian/ jessie/main libcap2 amd64 1:2.24-8 [15.3 kB] Get:473 http://mirror.bm.debian.org/debian/ jessie/main libcap2-bin amd64 1:2.24-8 [25.4 kB] Get:474 http://mirror.bm.debian.org/debian/ jessie/main systemd amd64 215-17+deb8u7 [2545 kB] Get:475 http://mirror.bm.debian.org/debian/ jessie/main systemd-sysv amd64 215-17+deb8u7 [36.7 kB] Get:476 http://mirror.bm.debian.org/debian/ jessie/main init amd64 1.22 [4674 B] Get:477 http://mirror.bm.debian.org/debian/ jessie/main login amd64 1:4.2-3+deb8u4 [722 kB] Get:478 http://mirror.bm.debian.org/debian/ jessie/main sed amd64 4.2.2-4+deb8u1 [243 kB] Get:479 http://mirror.bm.debian.org/debian/ jessie/main tar amd64 1.27.1-2+deb8u1 [676 kB] Get:480 http://mirror.bm.debian.org/debian/ jessie/main sysvinit amd64 2.88dsf-59 [99.9 kB] Get:481 http://mirror.bm.debian.org/debian/ jessie/main libapt-pkg4.12 amd64 1.0.9.8.4 [792 kB] Get:482 http://mirror.bm.debian.org/debian/ jessie/main gpgv amd64 1.4.18-7+deb8u4 [209 kB] Get:483 http://mirror.bm.debian.org/debian/ jessie/main debian-archive-keyring all 2017.5~deb8u1 [56.7 kB] Get:484 http://mirror.bm.debian.org/debian/ jessie/main libusb-0.1-4 amd64 2:0.1.12-25 [21.9 kB] Get:485 http://mirror.bm.debian.org/debian/ jessie/main gnupg amd64 1.4.18-7+deb8u4 [1149 kB] Get:486 http://mirror.bm.debian.org/debian/ jessie/main apt amd64 1.0.9.8.4 [1109 kB] Get:487 http://mirror.bm.debian.org/debian/ jessie/main libdebconfclient0 amd64 0.192 [46.2 kB] Get:488 http://mirror.bm.debian.org/debian/ jessie/main base-passwd amd64 3.5.37 [64.5 kB] Get:489 http://mirror.bm.debian.org/debian/ jessie/main ncurses-base all 5.9+20140913-1+deb8u2 [222 kB] Get:490 http://mirror.bm.debian.org/debian/ jessie/main libslang2 amd64 2.3.0-2 [491 kB] Get:491 http://mirror.bm.debian.org/debian/ jessie/main libss2 amd64 1.42.12-2+b1 [65.0 kB] Get:492 http://mirror.bm.debian.org/debian/ jessie/main libboost-iostreams1.55.0 amd64 1.55.0+dfsg-3 [48.9 kB] Get:493 http://mirror.bm.debian.org/debian/ jessie/main libjson-c2 amd64 0.11-4 [24.8 kB] Get:494 http://mirror.bm.debian.org/debian/ jessie/main libpipeline1 amd64 1.4.0-1 [27.9 kB] Get:495 http://mirror.bm.debian.org/debian/ jessie/main libpopt0 amd64 1.16-10 [49.2 kB] Get:496 http://mirror.bm.debian.org/debian/ jessie/main groff-base amd64 1.22.2-8 [1183 kB] Get:497 http://mirror.bm.debian.org/debian/ jessie/main groff amd64 1.22.2-8 [3240 kB] Get:498 http://mirror.bm.debian.org/debian/ jessie/main bsdmainutils amd64 9.0.6 [183 kB] Get:499 http://mirror.bm.debian.org/debian/ jessie/main man-db amd64 2.7.0.2-5 [1000 kB] Get:500 http://mirror.bm.debian.org/debian/ jessie/main tasksel-data all 3.31+deb8u1 [18.0 kB] Get:501 http://mirror.bm.debian.org/debian/ jessie/main tasksel all 3.31+deb8u1 [95.9 kB] Get:502 http://mirror.bm.debian.org/debian/ jessie/main libasprintf0c2 amd64 0.19.3-2 [31.3 kB] Get:503 http://mirror.bm.debian.org/debian/ jessie/main libgpm2 amd64 1.20.4-6.1+b2 [34.0 kB] Get:504 http://mirror.bm.debian.org/debian/ jessie/main file amd64 1:5.22+15-2+deb8u3 [60.4 kB] Get:505 http://mirror.bm.debian.org/debian/ jessie/main libmagic1 amd64 1:5.22+15-2+deb8u3 [250 kB] Get:506 http://mirror.bm.debian.org/debian/ jessie/main libwrap0 amd64 7.6.q-25 [58.5 kB] Get:507 http://mirror.bm.debian.org/debian/ jessie/main fonts-circos-symbols all 0.66-1 [31.6 kB] Get:508 http://mirror.bm.debian.org/debian/ jessie/main fonts-cmu all 0.7.0-3 [4874 kB] Get:509 http://mirror.bm.debian.org/debian/ jessie/main libregexp-common-perl all 2013031301-1 [173 kB] Get:510 http://mirror.bm.debian.org/debian/ jessie/main libcarp-always-perl all 0.12-1 [9142 B] Get:511 http://mirror.bm.debian.org/debian/ jessie/main libconfig-general-perl all 2.56-1 [70.0 kB] Get:512 http://mirror.bm.debian.org/debian/ jessie/main libdata-dumper-simple-perl all 0.11-4 [13.1 kB] Get:513 http://mirror.bm.debian.org/debian/ jessie/main libgetopt-simple-perl all 1.52-4 [14.4 kB] Get:514 http://mirror.bm.debian.org/debian/ jessie/main libmath-bezier-perl all 0.01-1 [7950 B] Get:515 http://mirror.bm.debian.org/debian/ jessie/main libmath-round-perl all 0.06-4 [10.1 kB] Get:516 http://mirror.bm.debian.org/debian/ jessie/main libparams-validate-perl amd64 1.13-1+b1 [65.2 kB] Get:517 http://mirror.bm.debian.org/debian/ jessie/main libreadonly-perl all 2.000-1 [20.8 kB] Get:518 http://mirror.bm.debian.org/debian/ jessie/main libset-intspan-perl all 1.19-1 [26.7 kB] Get:519 http://mirror.bm.debian.org/debian/ jessie/main liblist-allutils-perl all 0.09-1 [20.4 kB] Get:520 http://mirror.bm.debian.org/debian/ jessie/main libmath-vec-perl all 1.01-2 [17.7 kB] Get:521 http://mirror.bm.debian.org/debian/ jessie/main libspiffy-perl all 0.41-1 [26.1 kB] Get:522 http://mirror.bm.debian.org/debian/ jessie/main libio-all-perl all 0.79-1 [68.2 kB] Get:523 http://mirror.bm.debian.org/debian/ jessie/main libmath-vecstat-perl all 0.08-1 [9148 B] Get:524 http://mirror.bm.debian.org/debian/ jessie/main libgraphics-colornames-perl all 2.11-6 [37.7 kB] Get:525 http://mirror.bm.debian.org/debian/ jessie/main libgraphics-colorobject-perl all 0.5.0-6 [28.7 kB] Get:526 http://mirror.bm.debian.org/debian/ jessie/main libtext-format-perl all 0.59-1 [19.6 kB] Get:527 http://mirror.bm.debian.org/debian/ jessie/main libfont-ttf-perl all 1.04-1 [355 kB] Get:528 http://mirror.bm.debian.org/debian/ jessie/main circos all 0.66-1 [19.2 MB] Get:529 http://mirror.bm.debian.org/debian/ jessie/main circos-tools all 0.18-1 [13.3 MB] Get:530 http://mirror.bm.debian.org/debian/ jessie/main fonts-droid all 1:4.4.4r2-6 [3729 kB] Get:531 http://mirror.bm.debian.org/debian/ jessie/main fonts-lato all 2.0-1 [2684 kB] Get:532 http://mirror.bm.debian.org/debian/ jessie/main gawk amd64 1:4.1.1+dfsg-1 [520 kB] Get:533 http://mirror.bm.debian.org/debian/ jessie/main libaio1 amd64 0.3.110-1 [9312 B] Get:534 http://mirror.bm.debian.org/debian/ jessie/main libamd2.3.1 amd64 1:4.2.1-3 [26.3 kB] Get:535 http://mirror.bm.debian.org/debian/ jessie/main liblzo2-2 amd64 2.08-1.2 [54.6 kB] Get:536 http://mirror.bm.debian.org/debian/ jessie/main libarchive13 amd64 3.1.2-11+deb8u3 [271 kB] Get:537 http://mirror.bm.debian.org/debian/ jessie/main libasyncns0 amd64 0.8-5 [12.5 kB] Get:538 http://mirror.bm.debian.org/debian/ jessie/main libatk1.0-0 amd64 2.14.0-1 [92.0 kB] Get:539 http://mirror.bm.debian.org/debian/ jessie/main libatk1.0-data all 2.14.0-1 [181 kB] Get:540 http://mirror.bm.debian.org/debian/ jessie/main libatspi2.0-0 amd64 2.14.0-1 [57.7 kB] Get:541 http://mirror.bm.debian.org/debian/ jessie/main libatk-bridge2.0-0 amd64 2.14.0-2 [54.8 kB] Get:542 http://mirror.bm.debian.org/debian/ jessie/main libcroco3 amd64 0.6.8-3+b1 [135 kB] Get:543 http://mirror.bm.debian.org/debian/ jessie/main librsvg2-common amd64 2.40.5-1+deb8u2 [170 kB] Get:544 http://mirror.bm.debian.org/debian/ jessie/main libgdk-pixbuf2.0-common all 2.31.1-2+deb8u6 [294 kB] Get:545 http://mirror.bm.debian.org/debian/ jessie/main libgdk-pixbuf2.0-0 amd64 2.31.1-2+deb8u6 [167 kB] Get:546 http://mirror.bm.debian.org/debian/ jessie/main librsvg2-2 amd64 2.40.5-1+deb8u2 [249 kB] Get:547 http://mirror.bm.debian.org/debian/ jessie/main libjasper1 amd64 1.900.1-debian1-2.4+deb8u3 [134 kB] Get:548 http://mirror.bm.debian.org/debian/ jessie/main libgtk2.0-common all 2.24.25-3+deb8u2 [3137 kB] Get:549 http://mirror.bm.debian.org/debian/ jessie/main libgtk2.0-bin amd64 2.24.25-3+deb8u2 [535 kB] Get:550 http://mirror.bm.debian.org/debian/ jessie/main libxcomposite1 amd64 1:0.4.4-1 [17.4 kB] Get:551 http://mirror.bm.debian.org/debian/ jessie/main libxinerama1 amd64 2:1.1.3-1+b1 [16.9 kB] Get:552 http://mirror.bm.debian.org/debian/ jessie/main libxrandr2 amd64 2:1.4.2-1+deb8u1 [35.5 kB] Get:553 http://mirror.bm.debian.org/debian/ jessie/main shared-mime-info amd64 1.3-1 [634 kB] Get:554 http://mirror.bm.debian.org/debian/ jessie/main libgtk2.0-0 amd64 2.24.25-3+deb8u2 [2302 kB] Get:555 http://mirror.bm.debian.org/debian/ jessie/main libatk-wrapper-java all 0.30.5-1 [30.3 kB] Get:556 http://mirror.bm.debian.org/debian/ jessie/main libatk-wrapper-java-jni amd64 0.30.5-1 [24.8 kB] Get:557 http://mirror.bm.debian.org/debian/ jessie/main libaudio2 amd64 1.9.4-3 [79.8 kB] Get:558 http://mirror.bm.debian.org/debian/ jessie/main libavahi-glib1 amd64 0.6.31-5 [36.4 kB] Get:559 http://mirror.bm.debian.org/debian/ jessie/main libbonobo2-common all 2.32.1-3 [243 kB] Get:560 http://mirror.bm.debian.org/debian/ jessie/main liborbit-2-0 amd64 1:2.14.19-0.3 [223 kB] Get:561 http://mirror.bm.debian.org/debian/ jessie/main libbonobo2-0 amd64 2.32.1-3 [274 kB] Get:562 http://mirror.bm.debian.org/debian/ jessie/main libboost-system1.55.0 amd64 1.55.0+dfsg-3 [30.2 kB] Get:563 http://mirror.bm.debian.org/debian/ jessie/main libboost-chrono1.55.0 amd64 1.55.0+dfsg-3 [35.1 kB] Get:564 http://mirror.bm.debian.org/debian/ jessie/main libboost-date-time1.55.0 amd64 1.55.0+dfsg-3 [41.5 kB] Get:565 http://mirror.bm.debian.org/debian/ jessie/main libboost-filesystem1.55.0 amd64 1.55.0+dfsg-3 [58.8 kB] Get:566 http://mirror.bm.debian.org/debian/ jessie/main libboost-math1.55.0 amd64 1.55.0+dfsg-3 [282 kB] Get:567 http://mirror.bm.debian.org/debian/ jessie/main libboost-serialization1.55.0 amd64 1.55.0+dfsg-3 [153 kB] Get:568 http://mirror.bm.debian.org/debian/ jessie/main libboost-mpi1.55.0 amd64 1.55.0+dfsg-3 [69.7 kB] Get:569 http://mirror.bm.debian.org/debian/ jessie/main libboost-program-options1.55.0 amd64 1.55.0+dfsg-3 [143 kB] Get:570 http://mirror.bm.debian.org/debian/ jessie/main libboost-random1.55.0 amd64 1.55.0+dfsg-3 [30.3 kB] Get:571 http://mirror.bm.debian.org/debian/ jessie/main libboost-regex1.55.0 amd64 1.55.0+dfsg-3 [293 kB] Get:572 http://mirror.bm.debian.org/debian/ jessie/main libboost-thread1.55.0 amd64 1.55.0+dfsg-3 [53.4 kB] Get:573 http://mirror.bm.debian.org/debian/ jessie/main libboost-timer1.55.0 amd64 1.55.0+dfsg-3 [32.5 kB] Get:574 http://mirror.bm.debian.org/debian/ jessie/main libcaca0 amd64 0.99.beta19-2 [346 kB] Get:575 http://mirror.bm.debian.org/debian/ jessie/main libcairo-gobject2 amd64 1.14.0-2.1+deb8u2 [304 kB] Get:576 http://mirror.bm.debian.org/debian/ jessie/main libtdb1 amd64 1.3.6-0+deb8u1 [42.6 kB] Get:577 http://mirror.bm.debian.org/debian/ jessie/main libvorbisfile3 amd64 1.3.4-2 [23.7 kB] Get:578 http://mirror.bm.debian.org/debian/ jessie/main libcanberra0 amd64 0.30-2.1 [36.8 kB] Get:579 http://mirror.bm.debian.org/debian/ jessie/main libdconf1 amd64 0.22.0-1 [35.2 kB] Get:580 http://mirror.bm.debian.org/debian/ jessie/main dconf-service amd64 0.22.0-1 [41.6 kB] Get:581 http://mirror.bm.debian.org/debian/ jessie/main dconf-gsettings-backend amd64 0.22.0-1 [33.9 kB] Get:582 http://mirror.bm.debian.org/debian/ jessie/main hicolor-icon-theme all 0.13-1 [8600 B] Get:583 http://mirror.bm.debian.org/debian/ jessie/main libwayland-client0 amd64 1.6.0-2 [23.4 kB] Get:584 http://mirror.bm.debian.org/debian/ jessie/main libwayland-cursor0 amd64 1.6.0-2 [12.5 kB] Get:585 http://mirror.bm.debian.org/debian/ jessie/main xkb-data all 2.12-1 [597 kB] Get:586 http://mirror.bm.debian.org/debian/ jessie/main libxkbcommon0 amd64 0.4.3-2 [115 kB] Get:587 http://mirror.bm.debian.org/debian/ jessie/main libgtk-3-bin amd64 3.14.5-1+deb8u1 [93.7 kB] Get:588 http://mirror.bm.debian.org/debian/ jessie/main adwaita-icon-theme all 3.14.0-2 [9978 kB] Get:589 http://mirror.bm.debian.org/debian/ jessie/main libgtk-3-common all 3.14.5-1+deb8u1 [3155 kB] Get:590 http://mirror.bm.debian.org/debian/ jessie/main libcolord2 amd64 1.2.1-1+b2 [229 kB] Get:591 http://mirror.bm.debian.org/debian/ jessie/main libjson-glib-1.0-common all 1.0.2-1 [147 kB] Get:592 http://mirror.bm.debian.org/debian/ jessie/main libjson-glib-1.0-0 amd64 1.0.2-1 [158 kB] Get:593 http://mirror.bm.debian.org/debian/ jessie/main libproxy1 amd64 0.4.11-4+b2 [56.8 kB] Get:594 http://mirror.bm.debian.org/debian/ jessie/main glib-networking-common all 2.42.0-2 [52.1 kB] Get:595 http://mirror.bm.debian.org/debian/ jessie/main glib-networking-services amd64 2.42.0-2 [17.0 kB] Get:596 http://mirror.bm.debian.org/debian/ jessie/main gsettings-desktop-schemas all 3.14.1-1 [391 kB] Get:597 http://mirror.bm.debian.org/debian/ jessie/main glib-networking amd64 2.42.0-2 [51.9 kB] Get:598 http://mirror.bm.debian.org/debian/ jessie/main libsoup2.4-1 amd64 2.48.0-1+deb8u1 [259 kB] Get:599 http://mirror.bm.debian.org/debian/ jessie/main libsoup-gnome2.4-1 amd64 2.48.0-1+deb8u1 [57.4 kB] Get:600 http://mirror.bm.debian.org/debian/ jessie/main librest-0.7-0 amd64 0.7.92-3 [33.2 kB] Get:601 http://mirror.bm.debian.org/debian/ jessie/main libgtk-3-0 amd64 3.14.5-1+deb8u1 [2249 kB] Get:602 http://mirror.bm.debian.org/debian/ jessie/main libcanberra-gtk3-0 amd64 0.30-2.1 [14.9 kB] Get:603 http://mirror.bm.debian.org/debian/ jessie/main libcap-ng0 amd64 0.7.4-2 [13.2 kB] Get:604 http://mirror.bm.debian.org/debian/ jessie/main libcdparanoia0 amd64 3.10.2+debian-11 [56.6 kB] Get:605 http://mirror.bm.debian.org/debian/ jessie/main libcfitsio2 amd64 3.370-2+deb8u1 [506 kB] Get:606 http://mirror.bm.debian.org/debian/ jessie/main libcolamd2.8.0 amd64 1:4.2.1-3 [20.4 kB] Get:607 http://mirror.bm.debian.org/debian/ jessie/main libgudev-1.0-0 amd64 215-17+deb8u7 [42.6 kB] Get:608 http://mirror.bm.debian.org/debian/ jessie/main libusb-1.0-0 amd64 2:1.0.19-1 [48.1 kB] Get:609 http://mirror.bm.debian.org/debian/ jessie/main libgusb2 amd64 0.1.6-5 [17.7 kB] Get:610 http://mirror.bm.debian.org/debian/ jessie/main libcolorhug2 amd64 1.2.1-1+b2 [154 kB] Get:611 http://mirror.bm.debian.org/debian/ jessie/main libqhull6 amd64 2012.1-5 [183 kB] Get:612 http://mirror.bm.debian.org/debian/ jessie/main libcsiro0 amd64 5.10.0+dfsg-1 [58.3 kB] Get:613 http://mirror.bm.debian.org/debian/ jessie/main curl amd64 7.38.0-4+deb8u8 [201 kB] Get:614 http://mirror.bm.debian.org/debian/ jessie/main libcurl3 amd64 7.38.0-4+deb8u8 [260 kB] Get:615 http://mirror.bm.debian.org/debian/ jessie/main libdbus-glib-1-2 amd64 0.102-1 [201 kB] Get:616 http://mirror.bm.debian.org/debian/ jessie/main libdirectfb-1.2-9 amd64 1.2.10.0-5.1 [1040 kB] Get:617 http://mirror.bm.debian.org/debian/ jessie/main libdjvulibre-text all 3.5.25.4-4 [59.8 kB] Get:618 http://mirror.bm.debian.org/debian/ jessie/main libdjvulibre21 amd64 3.5.25.4-4+b1 [578 kB] Get:619 http://mirror.bm.debian.org/debian/ jessie/main libisc-export95 amd64 1:9.9.5.dfsg-9+deb8u14 [141 kB] Get:620 http://mirror.bm.debian.org/debian/ jessie/main libdns-export100 amd64 1:9.9.5.dfsg-9+deb8u14 [456 kB] Get:621 http://mirror.bm.debian.org/debian/ jessie/main libelfg0 amd64 0.8.13-5 [51.6 kB] Get:622 http://mirror.bm.debian.org/debian/ jessie/main libexif12 amd64 0.6.21-2 [324 kB] Get:623 http://mirror.bm.debian.org/debian/ jessie/main libexiv2-13 amd64 0.24-4.1 [729 kB] Get:624 http://mirror.bm.debian.org/debian/ jessie/main libfltk1.3 amd64 1.3.2-6+b1 [644 kB] Get:625 http://mirror.bm.debian.org/debian/ jessie/main libfltk-images1.3 amd64 1.3.2-6+b1 [96.7 kB] Get:626 http://mirror.bm.debian.org/debian/ jessie/main libfontenc1 amd64 1:1.1.2-1+b2 [23.9 kB] Get:627 http://mirror.bm.debian.org/debian/ jessie/main libftgl2 amd64 2.1.3~rc5-4+nmu1 [93.2 kB] Get:628 http://mirror.bm.debian.org/debian/ jessie/main gconf2-common all 3.2.6-3 [1040 kB] Get:629 http://mirror.bm.debian.org/debian/ jessie/main libgconf-2-4 amd64 3.2.6-3 [426 kB] Get:630 http://mirror.bm.debian.org/debian/ jessie/main libunistring0 amd64 0.9.3-5.2+b1 [288 kB] Get:631 http://mirror.bm.debian.org/debian/ jessie/main libgettextpo0 amd64 0.19.3-2 [138 kB] Get:632 http://mirror.bm.debian.org/debian/ jessie/main libgflags2 amd64 2.0-2.1 [72.8 kB] Get:633 http://mirror.bm.debian.org/debian/ jessie/main libglade2-0 amd64 1:2.6.4-2 [81.8 kB] Get:634 http://mirror.bm.debian.org/debian/ jessie/main libglew1.10 amd64 1.10.0-3 [139 kB] Get:635 http://mirror.bm.debian.org/debian/ jessie/main libglpk36 amd64 4.55-1 [424 kB] Get:636 http://mirror.bm.debian.org/debian/ jessie/main libgmpxx4ldbl amd64 2:6.0.0+dfsg-6 [22.1 kB] Get:637 http://mirror.bm.debian.org/debian/ jessie/main gconf-service amd64 3.2.6-3 [414 kB] Get:638 http://mirror.bm.debian.org/debian/ jessie/main psmisc amd64 22.21-2 [119 kB] Get:639 http://mirror.bm.debian.org/debian/ jessie/main dbus amd64 1.8.22-0+deb8u1 [292 kB] Get:640 http://mirror.bm.debian.org/debian/ jessie/main dbus-x11 amd64 1.8.22-0+deb8u1 [73.7 kB] Get:641 http://mirror.bm.debian.org/debian/ jessie/main gconf2 amd64 3.2.6-3 [423 kB] Get:642 http://mirror.bm.debian.org/debian/ jessie/main gnome-mime-data all 2.18.0-1 [725 kB] Get:643 http://mirror.bm.debian.org/debian/ jessie/main libgnomevfs2-common all 1:2.24.4-6 [763 kB] Get:644 http://mirror.bm.debian.org/debian/ jessie/main libgnomevfs2-0 amd64 1:2.24.4-6+b1 [493 kB] Get:645 http://mirror.bm.debian.org/debian/ jessie/main libgnome2-common all 2.32.1-5 [936 kB] Get:646 http://mirror.bm.debian.org/debian/ jessie/main libgnome-2-0 amd64 2.32.1-5 [471 kB] Get:647 http://mirror.bm.debian.org/debian/ jessie/main libunwind8 amd64 1.1-3.2 [50.8 kB] Get:648 http://mirror.bm.debian.org/debian/ jessie/main libgoogle-glog0 amd64 0.3.3-2 [52.9 kB] Get:649 http://mirror.bm.debian.org/debian/ jessie/main libgphoto2-port10 amd64 2.5.4-1.1+b2 [146 kB] Get:650 http://mirror.bm.debian.org/debian/ jessie/main libgphoto2-6 amd64 2.5.4-1.1+b2 [823 kB] Get:651 http://mirror.bm.debian.org/debian/ jessie/main libgstreamer1.0-0 amd64 1.4.4-2+deb8u1 [1662 kB] Get:652 http://mirror.bm.debian.org/debian/ jessie/main liborc-0.4-0 amd64 1:0.4.22-1 [141 kB] Get:653 http://mirror.bm.debian.org/debian/ jessie/main iso-codes all 3.57-1 [2265 kB] Get:654 http://mirror.bm.debian.org/debian/ jessie/main libgstreamer-plugins-base1.0-0 amd64 1.4.4-2+deb8u1 [1298 kB] Get:655 http://mirror.bm.debian.org/debian/ jessie/main libharfbuzz-icu0 amd64 0.9.35-2 [360 kB] Get:656 http://mirror.bm.debian.org/debian/ jessie/main libhdf5-8 amd64 1.8.13+docs-15+deb8u1 [1061 kB] Get:657 http://mirror.bm.debian.org/debian/ jessie/main libieee1284-3 amd64 0.2.11-12 [28.9 kB] Get:658 http://mirror.bm.debian.org/debian/ jessie/main libijs-0.35 amd64 0.35-10 [20.0 kB] Get:659 http://mirror.bm.debian.org/debian/ jessie/main libilmbase6 amd64 1.0.1-6.1 [64.1 kB] Get:660 http://mirror.bm.debian.org/debian/ jessie/main libisccfg-export90 amd64 1:9.9.5.dfsg-9+deb8u14 [41.4 kB] Get:661 http://mirror.bm.debian.org/debian/ jessie/main libirs-export91 amd64 1:9.9.5.dfsg-9+deb8u14 [39.1 kB] Get:662 http://mirror.bm.debian.org/debian/ jessie/main libmagickwand-6.q16-2 amd64 8:6.8.9.9-5+deb8u11 [407 kB] Get:663 http://mirror.bm.debian.org/debian/ jessie/main libmng1 amd64 1.0.10+dfsg-3.1+b3 [217 kB] Get:664 http://mirror.bm.debian.org/debian/ jessie/main libmpdec2 amd64 2.4.1-1 [85.7 kB] Get:665 http://mirror.bm.debian.org/debian/ jessie/main libnotify4 amd64 0.7.6-2 [28.3 kB] Get:666 http://mirror.bm.debian.org/debian/ jessie/main libnspr4 amd64 2:4.12-1+debu8u1 [117 kB] Get:667 http://mirror.bm.debian.org/debian/ jessie/main libnss3 amd64 2:3.26-1+debu8u3 [1159 kB] Get:668 http://mirror.bm.debian.org/debian/ jessie/main libopenexr6 amd64 1.6.1-8 [183 kB] Get:669 http://mirror.bm.debian.org/debian/ jessie/main libpam-runtime all 1.1.8-3.1+deb8u2 [212 kB] Get:670 http://mirror.bm.debian.org/debian/ jessie/main libcgmanager0 amd64 0.33-2+deb8u2 [40.7 kB] Get:671 http://mirror.bm.debian.org/debian/ jessie/main libnih1 amd64 1.0.3-4.3 [127 kB] Get:672 http://mirror.bm.debian.org/debian/ jessie/main libnih-dbus1 amd64 1.0.3-4.3 [97.1 kB] Get:673 http://mirror.bm.debian.org/debian/ jessie/main init-system-helpers all 1.22 [14.0 kB] Get:674 http://mirror.bm.debian.org/debian/ jessie/main cgmanager amd64 0.33-2+deb8u2 [78.5 kB] Get:675 http://mirror.bm.debian.org/debian/ jessie/main systemd-shim amd64 9-1 [18.1 kB] Get:676 http://mirror.bm.debian.org/debian/ jessie/main libpam-systemd amd64 215-17+deb8u7 [126 kB] Get:677 http://mirror.bm.debian.org/debian/ jessie/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB] Get:678 http://mirror.bm.debian.org/debian/ jessie/main libpcsclite1 amd64 1.8.13-1+deb8u1 [56.2 kB] Get:679 http://mirror.bm.debian.org/debian/ jessie/main libpolkit-gobject-1-0 amd64 0.105-15~deb8u2 [43.1 kB] Get:680 http://mirror.bm.debian.org/debian/ jessie/main libpolkit-agent-1-0 amd64 0.105-15~deb8u2 [24.0 kB] Get:681 http://mirror.bm.debian.org/debian/ jessie/main libpolkit-backend-1-0 amd64 0.105-15~deb8u2 [45.2 kB] Get:682 http://mirror.bm.debian.org/debian/ jessie/main libopenjpeg5 amd64 1:1.5.2-3 [111 kB] Get:683 http://mirror.bm.debian.org/debian/ jessie/main libpoppler46 amd64 0.26.5-2+deb8u1 [1211 kB] Get:684 http://mirror.bm.debian.org/debian/ jessie/main libqt4-test amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [101 kB] Get:685 http://mirror.bm.debian.org/debian/ jessie/main libqt4-svg amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [177 kB] Get:686 http://mirror.bm.debian.org/debian/ jessie/main libqt4-opengl amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [343 kB] Get:687 http://mirror.bm.debian.org/debian/ jessie/main libqtgui4 amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [4189 kB] Get:688 http://mirror.bm.debian.org/debian/ jessie/main libqt4-sql-mysql amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [69.7 kB] Get:689 http://mirror.bm.debian.org/debian/ jessie/main libqt4-sql amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [139 kB] Get:690 http://mirror.bm.debian.org/debian/ jessie/main libqt4-network amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [605 kB] Get:691 http://mirror.bm.debian.org/debian/ jessie/main libqtdbus4 amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [223 kB] Get:692 http://mirror.bm.debian.org/debian/ jessie/main libqt4-xml amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [136 kB] Get:693 http://mirror.bm.debian.org/debian/ jessie/main libqtcore4 amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [1606 kB] Get:694 http://mirror.bm.debian.org/debian/ jessie/main qtcore4-l10n all 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [654 kB] Get:695 http://mirror.bm.debian.org/debian/ jessie/main libpoppler-qt4-4 amd64 0.26.5-2+deb8u1 [127 kB] Get:696 http://mirror.bm.debian.org/debian/ jessie/main libpth20 amd64 2.0.7-20 [78.1 kB] Get:697 http://mirror.bm.debian.org/debian/ jessie/main libxtst6 amd64 2:1.2.2-1+deb8u1 [27.2 kB] Get:698 http://mirror.bm.debian.org/debian/ jessie/main libpulse0 amd64 5.0-13 [255 kB] Get:699 http://mirror.bm.debian.org/debian/ jessie/main libexpat1-dev amd64 2.1.0-6+deb8u4 [126 kB] Get:700 http://mirror.bm.debian.org/debian/ jessie/main libpython2.7-dev amd64 2.7.9-2+deb8u1 [18.6 MB] Get:701 http://mirror.bm.debian.org/debian/ jessie/main libpython3.4-minimal amd64 3.4.2-1 [492 kB] Get:702 http://mirror.bm.debian.org/debian/ jessie/main libpython3.4-stdlib amd64 3.4.2-1 [2088 kB] Get:703 http://mirror.bm.debian.org/debian/ jessie/main libqsastime0 amd64 5.10.0+dfsg-1 [43.0 kB] Get:704 http://mirror.bm.debian.org/debian/ jessie/main libqt4-xmlpatterns amd64 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 [1099 kB] Get:705 http://mirror.bm.debian.org/debian/ jessie/main libqtwebkit4 amd64 2.3.4.dfsg-3 [9054 kB] Get:706 http://mirror.bm.debian.org/debian/ jessie/main librelion-1.3-1 amd64 1.3+dfsg-2 [557 kB] Get:707 http://mirror.bm.debian.org/debian/ jessie/main libsane-common all 1.0.24-8+deb8u2 [1000 kB] Get:708 http://mirror.bm.debian.org/debian/ jessie/main libv4lconvert0 amd64 1.6.0-2 [108 kB] Get:709 http://mirror.bm.debian.org/debian/ jessie/main libv4l-0 amd64 1.6.0-2 [71.8 kB] Get:710 http://mirror.bm.debian.org/debian/ jessie/main libsane amd64 1.0.24-8+deb8u2 [2039 kB] Get:711 http://mirror.bm.debian.org/debian/ jessie/main libsctp1 amd64 1.0.16+dfsg-2 [27.6 kB] Get:712 http://mirror.bm.debian.org/debian/ jessie/main libsdl1.2debian amd64 1.2.15-10+b1 [189 kB] Get:713 http://mirror.bm.debian.org/debian/ jessie/main libsigsegv2 amd64 2.10-4+b1 [29.2 kB] Get:714 http://mirror.bm.debian.org/debian/ jessie/main tcl8.5 amd64 8.5.17-1 [58.6 kB] Get:715 http://mirror.bm.debian.org/debian/ jessie/main libtcl8.5 amd64 8.5.17-1 [737 kB] Get:716 http://mirror.bm.debian.org/debian/ jessie/main libtcl8.6 amd64 8.6.2+dfsg-2 [978 kB] Get:717 http://mirror.bm.debian.org/debian/ jessie/main libtheora0 amd64 1.1.1+dfsg.1-6 [171 kB] Get:718 http://mirror.bm.debian.org/debian/ jessie/main libtinyxml2.6.2 amd64 2.6.2-2 [43.0 kB] Get:719 http://mirror.bm.debian.org/debian/ jessie/main tk8.5 amd64 8.5.17-1 [106 kB] Get:720 http://mirror.bm.debian.org/debian/ jessie/main libtk8.5 amd64 8.5.17-1 [749 kB] Get:721 http://mirror.bm.debian.org/debian/ jessie/main libtk8.6 amd64 8.6.2-1 [771 kB] Get:722 http://mirror.bm.debian.org/debian/ jessie/main libtre5 amd64 0.8.0-4+deb8u1 [57.8 kB] Get:723 http://mirror.bm.debian.org/debian/ jessie/main libvisual-0.4-0 amd64 0.4.0-6 [121 kB] Get:724 http://mirror.bm.debian.org/debian/ jessie/main libwmf0.2-7 amd64 0.2.8.4-10.3+deb8u2 [163 kB] Get:725 http://mirror.bm.debian.org/debian/ jessie/main libwxbase3.0-0 amd64 3.0.2-1+b1 [1103 kB] Get:726 http://mirror.bm.debian.org/debian/ jessie/main libwxgtk3.0-0 amd64 3.0.2-1+b1 [4608 kB] Get:727 http://mirror.bm.debian.org/debian/ jessie/main libxcb-shape0 amd64 1.10-3+b1 [11.6 kB] Get:728 http://mirror.bm.debian.org/debian/ jessie/main libxerces-c3.1 amd64 3.1.1-5.1+deb8u3 [865 kB] Get:729 http://mirror.bm.debian.org/debian/ jessie/main libxmuu1 amd64 2:1.1.2-1 [23.3 kB] Get:730 http://mirror.bm.debian.org/debian/ jessie/main libxp6 amd64 1:1.0.2-2 [22.2 kB] Get:731 http://mirror.bm.debian.org/debian/ jessie/main libxv1 amd64 2:1.0.10-1+deb8u1 [23.9 kB] Get:732 http://mirror.bm.debian.org/debian/ jessie/main libxxf86dga1 amd64 2:1.1.4-1+b1 [22.3 kB] Get:733 http://mirror.bm.debian.org/debian/ jessie/main libyaml-0-2 amd64 0.1.6-3 [50.4 kB] Get:734 http://mirror.bm.debian.org/debian/ jessie/main libzzip-0-13 amd64 0.13.62-3+deb8u1 [55.6 kB] Get:735 http://mirror.bm.debian.org/debian/ jessie/main lua-filesystem amd64 1.6.2-3 [10.1 kB] Get:736 http://mirror.bm.debian.org/debian/ jessie/main lua-lpeg amd64 0.12-1 [26.7 kB] Get:737 http://mirror.bm.debian.org/debian/ jessie/main lua-md5 amd64 1.2+git+1+8d87fee-1 [13.1 kB] Get:738 http://mirror.bm.debian.org/debian/ jessie/main metastudent-data all 1.0.1-2 [138 MB] Get:739 http://mirror.bm.debian.org/debian/ jessie/main metastudent-data-2 all 1.0.0-1 [227 kB] Get:740 http://mirror.bm.debian.org/debian/ jessie/main mysql-client-5.5 amd64 5.5.58-0+deb8u1 [1657 kB] Get:741 http://mirror.bm.debian.org/debian/ jessie/main mysql-server-core-5.5 amd64 5.5.58-0+deb8u1 [3416 kB] Get:742 http://mirror.bm.debian.org/debian/ jessie/main mysql-server-5.5 amd64 5.5.58-0+deb8u1 [1768 kB] Get:743 http://mirror.bm.debian.org/debian/ jessie/main java-common all 0.52 [136 kB] Get:744 http://mirror.bm.debian.org/debian/ jessie/main default-jre-headless amd64 2:1.7-52 [9072 B] Get:745 http://mirror.bm.debian.org/debian/ jessie/main ca-certificates-java all 20140324 [13.7 kB] Get:746 http://mirror.bm.debian.org/debian/ jessie/main openjdk-7-jre-headless amd64 7u111-2.6.7-1~deb8u1 [39.4 MB] Get:747 http://mirror.bm.debian.org/debian/ jessie/main poppler-data all 0.4.7-1 [1491 kB] Get:748 http://mirror.bm.debian.org/debian/ jessie/main python3.4-minimal amd64 3.4.2-1 [1646 kB] Get:749 http://mirror.bm.debian.org/debian/ jessie/main libcbf0 amd64 0.9.2.2-1 [168 kB] Get:750 http://mirror.bm.debian.org/debian/ jessie/main libcvector2 amd64 1.0.3.1-1.1 [5930 B] Get:751 http://mirror.bm.debian.org/debian/ jessie/main libcneartree5 amd64 3.1.1-2.1 [24.1 kB] Get:752 http://mirror.bm.debian.org/debian/ jessie/main libcqrlib2 amd64 1.1.2-2.1 [13.6 kB] Get:753 http://mirror.bm.debian.org/debian/ jessie/main libfreecontact0 amd64 1.0.21-3+b1 [85.9 kB] Get:754 http://mirror.bm.debian.org/debian/ jessie/main libhmsbeagle1 amd64 2.1.2-1 [72.4 kB] Get:755 http://mirror.bm.debian.org/debian/ jessie/main libsystemd-login0 amd64 215-17+deb8u7 [49.8 kB] Get:756 http://mirror.bm.debian.org/debian/ jessie/main libtxc-dxtn-s2tc0 amd64 0~git20131104-1.1 [51.6 kB] Get:757 http://mirror.bm.debian.org/debian/ jessie/main libwebp5 amd64 0.4.1-1.2+b2 [201 kB] Get:758 http://mirror.bm.debian.org/debian/ jessie/main libwebpdemux1 amd64 0.4.1-1.2+b2 [50.7 kB] Get:759 http://mirror.bm.debian.org/debian/ jessie/main libwebpmux1 amd64 0.4.1-1.2+b2 [57.2 kB] Get:760 http://mirror.bm.debian.org/debian/ jessie/main ocl-icd-libopencl1 amd64 2.2.3-1+deb8u1 [33.6 kB] Get:761 http://mirror.bm.debian.org/debian/ jessie/main rate4site amd64 3.0.0-1 [304 kB] Get:762 http://mirror.bm.debian.org/debian/ jessie/main multiarch-support amd64 2.19-18+deb8u10 [181 kB] Get:763 http://mirror.bm.debian.org/debian/ jessie/main dmidecode amd64 2.12-3 [64.4 kB] Get:764 http://mirror.bm.debian.org/debian/ jessie/main isc-dhcp-common amd64 4.3.1-6+deb8u2 [211 kB] Get:765 http://mirror.bm.debian.org/debian/ jessie/main isc-dhcp-client amd64 4.3.1-6+deb8u2 [250 kB] Get:766 http://mirror.bm.debian.org/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1 [67.6 kB] Get:767 http://mirror.bm.debian.org/debian/ jessie/main manpages all 3.74-1 [997 kB] Get:768 http://mirror.bm.debian.org/debian/ jessie/main debconf-i18n all 1.5.56+deb8u1 [206 kB] Get:769 http://mirror.bm.debian.org/debian/ jessie/main bc amd64 1.06.95-9 [103 kB] Get:770 http://mirror.bm.debian.org/debian/ jessie/main gettext-base amd64 0.19.3-2 [121 kB] Get:771 http://mirror.bm.debian.org/debian/ jessie/main krb5-locales all 1.12.1+dfsg-19+deb8u4 [2649 kB] Get:772 http://mirror.bm.debian.org/debian/ jessie/main libclass-isa-perl all 0.36-5 [10.1 kB] Get:773 http://mirror.bm.debian.org/debian/ jessie/main libswitch-perl all 2.17-2 [20.5 kB] Get:774 http://mirror.bm.debian.org/debian/ jessie/main openssh-client amd64 1:6.7p1-5+deb8u4 [693 kB] Get:775 http://mirror.bm.debian.org/debian/ jessie/main patch amd64 2.7.5-1 [109 kB] Get:776 http://mirror.bm.debian.org/debian/ jessie/main xz-utils amd64 5.1.1alpha+20120614-2+b3 [221 kB] Get:777 http://mirror.bm.debian.org/debian/ jessie/main abacas all 1.3.1-2 [23.9 kB] Get:778 http://mirror.bm.debian.org/debian/ jessie/main aevol amd64 4.4-1 [403 kB] Get:779 http://mirror.bm.debian.org/debian/ jessie/main openjdk-7-jre amd64 7u111-2.6.7-1~deb8u1 [176 kB] Get:780 http://mirror.bm.debian.org/debian/ jessie/main default-jre amd64 2:1.7-52 [968 B] Get:781 http://mirror.bm.debian.org/debian/ jessie/main libbytecode-java all 0.92.svn.20090106-1.1 [87.7 kB] Get:782 http://mirror.bm.debian.org/debian/ jessie/main libcommons-pool-java all 1.6-2 [105 kB] Get:783 http://mirror.bm.debian.org/debian/ jessie/main libcommons-collections3-java all 3.2.1-7+deb8u1 [597 kB] Get:784 http://mirror.bm.debian.org/debian/ jessie/main libcommons-dbcp-java all 1.4-5 [155 kB] Get:785 http://mirror.bm.debian.org/debian/ jessie/main libservlet2.5-java all 6.0.45+dfsg-1~deb8u1 [220 kB] Get:786 http://mirror.bm.debian.org/debian/ jessie/main libhsqldb-java all 2.2.9+dfsg-4 [1405 kB] Get:787 http://mirror.bm.debian.org/debian/ jessie/main libbiojava1.7-java all 1:1.7.1-5 [3160 kB] Get:788 http://mirror.bm.debian.org/debian/ jessie/main libbiojava-java all 1:1.7.1-5 [48.4 kB] Get:789 http://mirror.bm.debian.org/debian/ jessie/main alien-hunter all 1.7-3 [27.9 kB] Get:790 http://mirror.bm.debian.org/debian/ jessie/main amap-align amd64 2.2-4 [132 kB] Get:791 http://mirror.bm.debian.org/debian/ jessie/main libelk0 amd64 3.99.8-2.1 [163 kB] Get:792 http://mirror.bm.debian.org/debian/ jessie/main libprotobuf9 amd64 2.6.1-1 [361 kB] Get:793 http://mirror.bm.debian.org/debian/ jessie/main libanfo0 amd64 0.98-4+b1 [289 kB] Get:794 http://mirror.bm.debian.org/debian/ jessie/main anfo amd64 0.98-4+b1 [119 kB] Get:795 http://mirror.bm.debian.org/debian/ jessie/main ant-optional all 1.9.4-3 [316 kB] Get:796 http://mirror.bm.debian.org/debian/ jessie/main ant all 1.9.4-3 [1888 kB] Get:797 http://mirror.bm.debian.org/debian/ jessie/main aragorn amd64 1.2.36-4 [96.8 kB] Get:798 http://mirror.bm.debian.org/debian/ jessie/main python-decorator all 3.4.0-2 [22.3 kB] Get:799 http://mirror.bm.debian.org/debian/ jessie/main python-numpy amd64 1:1.8.2-2 [1630 kB] Get:800 http://mirror.bm.debian.org/debian/ jessie/main python-scipy amd64 0.14.0-2 [8144 kB] Get:801 http://mirror.bm.debian.org/debian/ jessie/main python-htseq amd64 0.5.4p3-2 [168 kB] Get:802 http://mirror.bm.debian.org/debian/ jessie/main python-six all 1.8.0-1 [12.6 kB] Get:803 http://mirror.bm.debian.org/debian/ jessie/main python-dateutil all 2.2-2 [51.3 kB] Get:804 http://mirror.bm.debian.org/debian/ jessie/main fonts-lyx all 2.1.2-2 [176 kB] Get:805 http://mirror.bm.debian.org/debian/ jessie/main python-matplotlib-data all 1.4.2-3.1 [3041 kB] Get:806 http://mirror.bm.debian.org/debian/ jessie/main python-pyparsing all 2.0.3+dfsg1-1 [64.0 kB] Get:807 http://mirror.bm.debian.org/debian/ jessie/main python-tz all 2012c+dfsg-0.1 [31.9 kB] Get:808 http://mirror.bm.debian.org/debian/ jessie/main libjs-jquery all 1.7.2+dfsg-3.2 [97.5 kB] Get:809 http://mirror.bm.debian.org/debian/ jessie/main libjs-jquery-ui all 1.10.1+dfsg-1 [499 kB] Get:810 http://mirror.bm.debian.org/debian/ jessie/main python-mock all 1.0.1-3 [33.2 kB] Get:811 http://mirror.bm.debian.org/debian/ jessie/main python-pkg-resources all 5.5.1-1 [64.4 kB] Get:812 http://mirror.bm.debian.org/debian/ jessie/main python-nose all 1.3.4-1 [134 kB] Get:813 http://mirror.bm.debian.org/debian/ jessie/main python-matplotlib amd64 1.4.2-3.1 [3780 kB] Get:814 http://mirror.bm.debian.org/debian/ jessie/main arden amd64 1.0-1 [90.5 kB] Get:815 http://mirror.bm.debian.org/debian/ jessie/main aspell-en all 7.1-0-1.1 [266 kB] Get:816 http://mirror.bm.debian.org/debian/ jessie/main at-spi2-core amd64 2.14.0-1 [46.6 kB] Get:817 http://mirror.bm.debian.org/debian/ jessie/main autodock amd64 4.2.6-2 [158 kB] Get:818 http://mirror.bm.debian.org/debian/ jessie/main autogrid amd64 4.2.6-2 [45.8 kB] Get:819 http://mirror.bm.debian.org/debian/ jessie/main autopoint all 0.19.3-2 [413 kB] Get:820 http://mirror.bm.debian.org/debian/ jessie/main autotools-dev all 20140911.1 [70.5 kB] Get:821 http://mirror.bm.debian.org/debian/ jessie/main libball1.4-data all 1.4.2+20140406-1 [30.3 MB] Get:822 http://mirror.bm.debian.org/debian/ jessie/main libball1.4 amd64 1.4.2+20140406-1+b2 [2958 kB] Get:823 http://mirror.bm.debian.org/debian/ jessie/main libballview1.4 amd64 1.4.2+20140406-1+b2 [1266 kB] Get:824 http://mirror.bm.debian.org/debian/ jessie/main python-ballview amd64 1.4.2+20140406-1+b2 [214 kB] Get:825 http://mirror.bm.debian.org/debian/ jessie/main python-ball amd64 1.4.2+20140406-1+b2 [562 kB] Get:826 http://mirror.bm.debian.org/debian/ jessie/main python-sip amd64 4.16.4+dfsg-1 [85.7 kB] Get:827 http://mirror.bm.debian.org/debian/ jessie/main ballview amd64 1.4.2+20140406-1+b2 [2510 kB] Get:828 http://mirror.bm.debian.org/debian/ jessie/main libbamtools2.3.0 amd64 2.3.0+dfsg-2 [164 kB] Get:829 http://mirror.bm.debian.org/debian/ jessie/main libjsoncpp0 amd64 0.6.0~rc2-3.1 [71.8 kB] Get:830 http://mirror.bm.debian.org/debian/ jessie/main bamtools amd64 2.3.0+dfsg-2 [182 kB] Get:831 http://mirror.bm.debian.org/debian/ jessie/main bedtools amd64 2.21.0-1 [608 kB] Get:832 http://mirror.bm.debian.org/debian/ jessie/main binfmt-support amd64 2.1.5-1 [58.2 kB] Get:833 http://mirror.bm.debian.org/debian/ jessie/main ant-contrib all 1.0~b3+svn177-6 [255 kB] Get:834 http://mirror.bm.debian.org/debian/ jessie/main libhamcrest-java all 1.3-5 [387 kB] Get:835 http://mirror.bm.debian.org/debian/ jessie/main junit4 all 4.11-3 [224 kB] Get:836 http://mirror.bm.debian.org/debian/ jessie/main libcommons-codec-java all 1.9-1 [215 kB] Get:837 http://mirror.bm.debian.org/debian/ jessie/main libcommons-logging-java all 1.2-1 [62.1 kB] Get:838 http://mirror.bm.debian.org/debian/ jessie/main libcommons-httpclient-java all 3.1-11+deb8u1 [298 kB] Get:839 http://mirror.bm.debian.org/debian/ jessie/main libmail-java all 1.5.2-3 [601 kB] Get:840 http://mirror.bm.debian.org/debian/ jessie/main libjcommon-java all 1.0.16-4 [455 kB] Get:841 http://mirror.bm.debian.org/debian/ jessie/main libjaxen-java all 1.1.6-1 [209 kB] Get:842 http://mirror.bm.debian.org/debian/ jessie/main libjdom1-java all 1.1.3-1 [150 kB] Get:843 http://mirror.bm.debian.org/debian/ jessie/main libjgoodies-common-java all 1.4.0-2 [32.4 kB] Get:844 http://mirror.bm.debian.org/debian/ jessie/main libjgoodies-forms-java all 1.6.0-4 [126 kB] Get:845 http://mirror.bm.debian.org/debian/ jessie/main libjzlib-java all 1.1.3-1 [69.9 kB] Get:846 http://mirror.bm.debian.org/debian/ jessie/main libjsch-java all 0.1.51-1 [268 kB] Get:847 http://mirror.bm.debian.org/debian/ jessie/main liblog4j1.2-java all 1.2.17-5 [386 kB] Get:848 http://mirror.bm.debian.org/debian/ jessie/main libmysql-java all 5.1.42-1~deb8u1 [1037 kB] Get:849 http://mirror.bm.debian.org/debian/ jessie/main liboro-java all 2.0.8a-9 [70.2 kB] Get:850 http://mirror.bm.debian.org/debian/ jessie/main libisorelax-java all 20041111-8 [63.3 kB] Get:851 http://mirror.bm.debian.org/debian/ jessie/main librelaxng-datatype-java all 1.0+ds1-3 [11.7 kB] Get:852 http://mirror.bm.debian.org/debian/ jessie/main libxerces2-java all 2.11.0-7 [1365 kB] Get:853 http://mirror.bm.debian.org/debian/ jessie/main libmsv-java all 2009.1+dfsg1-4 [788 kB] Get:854 http://mirror.bm.debian.org/debian/ jessie/main libdom4j-java all 1.6.1+dfsg.3-2 [353 kB] Get:855 http://mirror.bm.debian.org/debian/ jessie/main libxom-java all 1.2.10-1 [170 kB] Get:856 http://mirror.bm.debian.org/debian/ jessie/main libsaxonb-java all 9.1.0.8+dfsg-1 [1871 kB] Get:857 http://mirror.bm.debian.org/debian/ jessie/main biomaj all 1.2.3-4 [4279 kB] Get:858 http://mirror.bm.debian.org/debian/ jessie/main bioperl-run all 1.6.9-2 [44.0 kB] Get:859 http://mirror.bm.debian.org/debian/ jessie/main libbio-perl-run-perl all 1.6.9-2 [753 kB] Get:860 http://mirror.bm.debian.org/debian/ jessie/main biosquid amd64 1.9g+cvs20050121-4 [183 kB] Get:861 http://mirror.bm.debian.org/debian/ jessie/main blast2 amd64 1:2.2.26.20120620-8 [559 kB] Get:862 http://mirror.bm.debian.org/debian/ jessie/main menu amd64 2.1.47 [381 kB] Get:863 http://mirror.bm.debian.org/debian/ jessie/main blends-common all 0.6.92.2 [22.3 kB] Get:864 http://mirror.bm.debian.org/debian/ jessie/main python-tk amd64 2.7.8-2+b1 [26.7 kB] Get:865 http://mirror.bm.debian.org/debian/ jessie/main blt amd64 2.5.3+dfsg-1 [14.3 kB] Get:866 http://mirror.bm.debian.org/debian/ jessie/main tk8.6-blt2.5 amd64 2.5.3+dfsg-1 [586 kB] Get:867 http://mirror.bm.debian.org/debian/ jessie/main boxshade amd64 3.3.1-8 [52.5 kB] Get:868 http://mirror.bm.debian.org/debian/ jessie/main make amd64 4.0-8.1 [349 kB] Get:869 http://mirror.bm.debian.org/debian/ jessie/main dpkg-dev all 1.17.27 [1548 kB] Get:870 http://mirror.bm.debian.org/debian/ jessie/main libdpkg-perl all 1.17.27 [1075 kB] Get:871 http://mirror.bm.debian.org/debian/ jessie/main build-essential amd64 11.7 [7114 B] Get:872 http://mirror.bm.debian.org/debian/ jessie/main bwa amd64 0.7.10-1 [169 kB] Get:873 http://mirror.bm.debian.org/debian/ jessie/main bzip2-doc all 1.0.6-7 [307 kB] Get:874 http://mirror.bm.debian.org/debian/ jessie/main libcassie1 amd64 1.0.1+dfsg-3+b1 [36.5 kB] Get:875 http://mirror.bm.debian.org/debian/ jessie/main cassiopee amd64 1.0.1+dfsg-3+b1 [12.3 kB] Get:876 http://mirror.bm.debian.org/debian/ jessie/main cd-hit amd64 4.6.1-2012-08-27-2 [417 kB] Get:877 http://mirror.bm.debian.org/debian/ jessie/main cdbfasta amd64 0.99-20100722-1 [82.4 kB] Get:878 http://mirror.bm.debian.org/debian/ jessie/main cdbs all 0.4.130+deb8u1 [77.1 kB] Get:879 http://mirror.bm.debian.org/debian/ jessie/main microbiomeutil-data all 20101212+dfsg-1 [2167 kB] Get:880 http://mirror.bm.debian.org/debian/ jessie/main chimeraslayer all 20101212+dfsg-1 [33.1 kB] Get:881 http://mirror.bm.debian.org/debian/ jessie/main clearcut amd64 1.0.9-1 [282 kB] Get:882 http://mirror.bm.debian.org/debian/ jessie/main libargtable2-0 amd64 12-1.1 [17.2 kB] Get:883 http://mirror.bm.debian.org/debian/ jessie/main clustalo amd64 1.2.1-1 [251 kB] Get:884 http://mirror.bm.debian.org/debian/ jessie/main clustalw amd64 2.1+lgpl-4 [276 kB] Get:885 http://mirror.bm.debian.org/debian/ jessie/main clustalx amd64 2.1+lgpl-3 [433 kB] Get:886 http://mirror.bm.debian.org/debian/ jessie/main policykit-1 amd64 0.105-15~deb8u2 [62.2 kB] Get:887 http://mirror.bm.debian.org/debian/ jessie/main colord-data all 1.2.1-1 [1213 kB] Get:888 http://mirror.bm.debian.org/debian/ jessie/main colord amd64 1.2.1-1+b2 [297 kB] Get:889 http://mirror.bm.debian.org/debian/ jessie/main cython amd64 0.21.1-1 [1518 kB] Get:890 http://mirror.bm.debian.org/debian/ jessie/main gettext amd64 0.19.3-2 [1240 kB] Get:891 http://mirror.bm.debian.org/debian/ jessie/main intltool-debian all 0.35.0+20060710.1 [30.8 kB] Get:892 http://mirror.bm.debian.org/debian/ jessie/main po-debconf all 1.0.16+nmu3 [220 kB] Get:893 http://mirror.bm.debian.org/debian/ jessie/main debhelper all 9.20150101+deb8u2 [817 kB] Get:894 http://mirror.bm.debian.org/debian/ jessie/main python3.4 amd64 3.4.2-1 [204 kB] Get:895 http://mirror.bm.debian.org/debian/ jessie/main python3-minimal amd64 3.4.2-2 [34.7 kB] Get:896 http://mirror.bm.debian.org/debian/ jessie/main libpython3-stdlib amd64 3.4.2-2 [18.1 kB] Get:897 http://mirror.bm.debian.org/debian/ jessie/main python3 amd64 3.4.2-2 [21.2 kB] Get:898 http://mirror.bm.debian.org/debian/ jessie/main dh-python all 1.20141111-2 [66.4 kB] Get:899 http://mirror.bm.debian.org/debian/ jessie/main dialign amd64 2.2.1-7 [135 kB] Get:900 http://mirror.bm.debian.org/debian/ jessie/main dialign-tx amd64 1.0.2-7 [83.0 kB] Get:901 http://mirror.bm.debian.org/debian/ jessie/main dialign-tx-data all 1.0.2-7 [880 kB] Get:902 http://mirror.bm.debian.org/debian/ jessie/main discosnp amd64 1.2.5-1 [140 kB] Get:903 http://mirror.bm.debian.org/debian/ jessie/main dnaclust amd64 3-2+b1 [86.2 kB] Get:904 http://mirror.bm.debian.org/debian/ jessie/main docutils-common all 0.12+dfsg-1 [185 kB] Get:905 http://mirror.bm.debian.org/debian/ jessie/main docutils-doc all 0.12+dfsg-1 [896 kB] Get:906 http://mirror.bm.debian.org/debian/ jessie/main dssp amd64 2.2.1-2+b1 [167 kB] Get:907 http://mirror.bm.debian.org/debian/ jessie/main libkpathsea6 amd64 2014.20140926.35254-6 [154 kB] Get:908 http://mirror.bm.debian.org/debian/ jessie/main libptexenc1 amd64 2014.20140926.35254-6 [54.1 kB] Get:909 http://mirror.bm.debian.org/debian/ jessie/main ghostscript amd64 9.06~dfsg-2+deb8u6 [84.9 kB] Get:910 http://mirror.bm.debian.org/debian/ jessie/main libjbig2dec0 amd64 0.13-4~deb8u2 [60.2 kB] Get:911 http://mirror.bm.debian.org/debian/ jessie/main libgs9 amd64 9.06~dfsg-2+deb8u6 [1916 kB] Get:912 http://mirror.bm.debian.org/debian/ jessie/main libgs9-common all 9.06~dfsg-2+deb8u6 [1980 kB] Get:913 http://mirror.bm.debian.org/debian/ jessie/main libpotrace0 amd64 1.12-1+deb8u1 [25.2 kB] Get:914 http://mirror.bm.debian.org/debian/ jessie/main libsynctex1 amd64 2014.20140926.35254-6 [61.1 kB] Get:915 http://mirror.bm.debian.org/debian/ jessie/main tex-common all 5.03 [625 kB] Get:916 http://mirror.bm.debian.org/debian/ jessie/main texlive-binaries amd64 2014.20140926.35254-6 [6782 kB] Get:917 http://mirror.bm.debian.org/debian/ jessie/main dvipng amd64 1.14-2+b1 [84.4 kB] Get:918 http://mirror.bm.debian.org/debian/ jessie/main libhpdf-2.2.1 amd64 2.2.1-1.1 [322 kB] Get:919 http://mirror.bm.debian.org/debian/ jessie/main emboss amd64 6.6.0+dfsg-1 [1023 kB] Get:920 http://mirror.bm.debian.org/debian/ jessie/main emboss-data all 6.6.0+dfsg-1 [60.8 MB] Get:921 http://mirror.bm.debian.org/debian/ jessie/main embassy-domainatrix amd64 0.1.650-1 [61.2 kB] Get:922 http://mirror.bm.debian.org/debian/ jessie/main embassy-domsearch amd64 1:0.1.650-1 [60.6 kB] Get:923 http://mirror.bm.debian.org/debian/ jessie/main emboss-lib amd64 6.6.0+dfsg-1 [3102 kB] Get:924 http://mirror.bm.debian.org/debian/ jessie/main embassy-domalign amd64 0.1.650-1 [66.6 kB] Get:925 http://mirror.bm.debian.org/debian/ jessie/main fakeroot amd64 1.20.2-1 [84.7 kB] Get:926 http://mirror.bm.debian.org/debian/ jessie/main libfakeroot amd64 1.20.2-1 [44.7 kB] Get:927 http://mirror.bm.debian.org/debian/ jessie/main python3-pkg-resources all 5.5.1-1 [34.2 kB] Get:928 http://mirror.bm.debian.org/debian/ jessie/main python3-nose all 1.3.4-1 [131 kB] Get:929 http://mirror.bm.debian.org/debian/ jessie/main fastaq all 1.5.0-1 [50.0 kB] Get:930 http://mirror.bm.debian.org/debian/ jessie/main fastjar amd64 2:0.98-5 [90.2 kB] Get:931 http://mirror.bm.debian.org/debian/ jessie/main libcommons-math3-java all 3.3-1 [1729 kB] Get:932 http://mirror.bm.debian.org/debian/ jessie/main libjbzip2-java all 0.9.1-3 [39.9 kB] Get:933 http://mirror.bm.debian.org/debian/ jessie/main libsam-java all 1.113-1 [200 kB] Get:934 http://mirror.bm.debian.org/debian/ jessie/main fastqc all 0.11.2+dfsg-3 [360 kB] Get:935 http://mirror.bm.debian.org/debian/ jessie/main libgtextutils0 amd64 0.7-2 [18.9 kB] Get:936 http://mirror.bm.debian.org/debian/ jessie/main libgd-text-perl all 0.86-9 [41.4 kB] Get:937 http://mirror.bm.debian.org/debian/ jessie/main libgd-graph-perl all 1.48-2 [389 kB] Get:938 http://mirror.bm.debian.org/debian/ jessie/main fastx-toolkit amd64 0.0.14-1 [85.2 kB] Get:939 http://mirror.bm.debian.org/debian/ jessie/main jarwrapper all 0.48+deb8u1 [17.2 kB] Get:940 http://mirror.bm.debian.org/debian/ jessie/main libfreehep-graphics2d-java all 2.1.1-4 [121 kB] Get:941 http://mirror.bm.debian.org/debian/ jessie/main libitext5-java all 5.5.3-2 [2043 kB] Get:942 http://mirror.bm.debian.org/debian/ jessie/main libjam-java all 0.0.r304-1 [164 kB] Get:943 http://mirror.bm.debian.org/debian/ jessie/main libjebl2-java all 0.0.r22-1 [495 kB] Get:944 http://mirror.bm.debian.org/debian/ jessie/main figtree all 1.4-2 [929 kB] Get:945 http://mirror.bm.debian.org/debian/ jessie/main filo amd64 1.1+2011123001.1 [44.6 kB] Get:946 http://mirror.bm.debian.org/debian/ jessie/main python-pyrex all 0.9.8.5-2.1 [222 kB] Get:947 http://mirror.bm.debian.org/debian/ jessie/main python-pysam amd64 0.7.7-1 [596 kB] Get:948 http://mirror.bm.debian.org/debian/ jessie/main fitgcp amd64 0.0.20130418-2 [12.2 kB] Get:949 http://mirror.bm.debian.org/debian/ jessie/main libtbb2 amd64 4.2~20140122-5 [121 kB] Get:950 http://mirror.bm.debian.org/debian/ jessie/main flexbar amd64 2.50-1 [238 kB] Get:951 http://mirror.bm.debian.org/debian/ jessie/main fonts-cabin all 1.5-2 [139 kB] Get:952 http://mirror.bm.debian.org/debian/ jessie/main fonts-comfortaa all 2.003-1 [133 kB] Get:953 http://mirror.bm.debian.org/debian/ jessie/main fonts-crosextra-caladea all 20130214-1 [82.1 kB] Get:954 http://mirror.bm.debian.org/debian/ jessie/main fonts-crosextra-carlito all 20130920-1 [745 kB] Get:955 http://mirror.bm.debian.org/debian/ jessie/main ttf-dejavu-extra all 2.34-1 [30.8 kB] Get:956 http://mirror.bm.debian.org/debian/ jessie/main fonts-dejavu-extra all 2.34-1 [1771 kB] Get:957 http://mirror.bm.debian.org/debian/ jessie/main ttf-dejavu all 2.34-1 [30.5 kB] Get:958 http://mirror.bm.debian.org/debian/ jessie/main fonts-dejavu all 2.34-1 [30.8 kB] Get:959 http://mirror.bm.debian.org/debian/ jessie/main fonts-ebgaramond all 0.015+git20130628-3 [415 kB] Get:960 http://mirror.bm.debian.org/debian/ jessie/main fonts-ebgaramond-extra all 0.015+git20130628-3 [680 kB] Get:961 http://mirror.bm.debian.org/debian/ jessie/main fonts-font-awesome all 4.2.0~dfsg-1 [346 kB] Get:962 http://mirror.bm.debian.org/debian/ jessie/main fonts-freefont-otf all 20120503-4 [3186 kB] Get:963 http://mirror.bm.debian.org/debian/ jessie/main fonts-gfs-artemisia all 1.1-5 [259 kB] Get:964 http://mirror.bm.debian.org/debian/ jessie/main fonts-gfs-complutum all 1.1-6 [41.6 kB] Get:965 http://mirror.bm.debian.org/debian/ jessie/main fonts-gfs-didot all 1.1-6 [278 kB] Get:966 http://mirror.bm.debian.org/debian/ jessie/main fonts-gfs-neohellenic all 1.1-6 [215 kB] Get:967 http://mirror.bm.debian.org/debian/ jessie/main fonts-gfs-olga all 1.1-5 [33.2 kB] Get:968 http://mirror.bm.debian.org/debian/ jessie/main fonts-gfs-solomos all 1.1-5 [40.6 kB] Get:969 http://mirror.bm.debian.org/debian/ jessie/main fonts-inconsolata all 001.010-5 [61.6 kB] Get:970 http://mirror.bm.debian.org/debian/ jessie/main fonts-junicode all 0.7.8-2 [643 kB] Get:971 http://mirror.bm.debian.org/debian/ jessie/main fonts-linuxlibertine all 5.3.0-2 [1713 kB] Get:972 http://mirror.bm.debian.org/debian/ jessie/main fonts-lmodern all 2.004.4-5 [4539 kB] Get:973 http://mirror.bm.debian.org/debian/ jessie/main fonts-lobster all 2.0-2 [39.5 kB] Get:974 http://mirror.bm.debian.org/debian/ jessie/main fonts-lobstertwo all 2.0-2 [94.0 kB] Get:975 http://mirror.bm.debian.org/debian/ jessie/main fonts-oflb-asana-math all 000.907-6 [245 kB] Get:976 http://mirror.bm.debian.org/debian/ jessie/main fonts-sil-gentium all 20081126:1.02-13 [241 kB] Get:977 http://mirror.bm.debian.org/debian/ jessie/main fonts-sil-gentium-basic all 1.1-7 [382 kB] Get:978 http://mirror.bm.debian.org/debian/ jessie/main fonts-texgyre all 20140520-1 [7943 kB] Get:979 http://mirror.bm.debian.org/debian/ jessie/main libgtkglext1 amd64 1.2.0-3.2 [89.1 kB] Get:980 http://mirror.bm.debian.org/debian/ jessie/main gamgi amd64 0.17.1-1 [673 kB] Get:981 http://mirror.bm.debian.org/debian/ jessie/main python-reportlab-accel amd64 3.1.8-3+deb8u1 [25.7 kB] Get:982 http://mirror.bm.debian.org/debian/ jessie/main python-reportlab all 3.1.8-3+deb8u1 [453 kB] Get:983 http://mirror.bm.debian.org/debian/ jessie/main python-biopython amd64 1.64+dfsg-5 [1165 kB] Get:984 http://mirror.bm.debian.org/debian/ jessie/main bowtie amd64 1.1.1-2 [1369 kB] Get:985 http://mirror.bm.debian.org/debian/ jessie/main bowtie2 amd64 2.2.4-1 [1086 kB] Get:986 http://mirror.bm.debian.org/debian/ jessie/main seqan-apps amd64 1.4.1+dfsg-2 [7487 kB] Get:987 http://mirror.bm.debian.org/debian/ jessie/main gasic amd64 0.0.r18-2 [19.9 kB] Get:988 http://mirror.bm.debian.org/debian/ jessie/main gdpc amd64 2.2.5-3 [33.2 kB] Get:989 http://mirror.bm.debian.org/debian/ jessie/main libsqlite0 amd64 2.8.17-12 [140 kB] Get:990 http://mirror.bm.debian.org/debian/ jessie/main gentle amd64 1.9+cvs20100605+dfsg1-3 [3717 kB] Get:991 http://mirror.bm.debian.org/debian/ jessie/main libglpk-java amd64 1.0.37-1 [784 kB] Get:992 http://mirror.bm.debian.org/debian/ jessie/main glpk-utils amd64 4.55-1 [159 kB] Get:993 http://mirror.bm.debian.org/debian/ jessie/main tophat amd64 2.0.13+dfsg-1 [717 kB] Get:994 http://mirror.bm.debian.org/debian/ jessie/main giira amd64 0.0.20140210-2 [141 kB] Get:995 http://mirror.bm.debian.org/debian/ jessie/main glam2 amd64 1064-3 [235 kB] Get:996 http://mirror.bm.debian.org/debian/ jessie/main aglfn all 1.7-3 [29.2 kB] Get:997 http://mirror.bm.debian.org/debian/ jessie/main gnuplot-nox amd64 4.6.6-2 [832 kB] Get:998 http://mirror.bm.debian.org/debian/ jessie/main gnuplot-tex all 4.6.6-2 [103 kB] Get:999 http://mirror.bm.debian.org/debian/ jessie/main gnuplot all 4.6.6-2 [100 kB] Get:1000 http://mirror.bm.debian.org/debian/ jessie/main gnuplot-data all 4.6.6-2 [149 kB] Get:1001 http://mirror.bm.debian.org/debian/ jessie/main gstreamer1.0-plugins-base amd64 1.4.4-2+deb8u1 [1285 kB] Get:1002 http://mirror.bm.debian.org/debian/ jessie/main heirloom-mailx amd64 12.5-4 [252 kB] Get:1003 http://mirror.bm.debian.org/debian/ jessie/main hmmer amd64 3.1b1-3 [1026 kB] Get:1004 http://mirror.bm.debian.org/debian/ jessie/main libpvm3 amd64 3.4.5-12.6 [87.0 kB] Get:1005 http://mirror.bm.debian.org/debian/ jessie/main hmmer2 amd64 2.3.2-8 [294 kB] Get:1006 http://mirror.bm.debian.org/debian/ jessie/main idba amd64 1.1.2-1 [279 kB] Get:1007 http://mirror.bm.debian.org/debian/ jessie/main imagemagick-6.q16 amd64 8:6.8.9.9-5+deb8u11 [513 kB] Get:1008 http://mirror.bm.debian.org/debian/ jessie/main imagemagick amd64 8:6.8.9.9-5+deb8u11 [160 kB] Get:1009 http://mirror.bm.debian.org/debian/ jessie/main infernal amd64 1.1.1-2 [1862 kB] Get:1010 http://mirror.bm.debian.org/debian/ jessie/main libcommons-compress-java all 1.9-1 [344 kB] Get:1011 http://mirror.bm.debian.org/debian/ jessie/main libcommons-net1-java all 1.4.1-5 [566 kB] Get:1012 http://mirror.bm.debian.org/debian/ jessie/main ipig amd64 0.0.r5-1 [166 kB] Get:1013 http://mirror.bm.debian.org/debian/ jessie/main python-pexpect all 3.2-1 [38.4 kB] Get:1014 http://mirror.bm.debian.org/debian/ jessie/main python-simplegeneric all 0.8.1-1 [11.9 kB] Get:1015 http://mirror.bm.debian.org/debian/ jessie/main ipython all 2.3.0-2 [616 kB] Get:1016 http://mirror.bm.debian.org/debian/ jessie/main unzip amd64 6.0-16+deb8u3 [162 kB] Get:1017 http://mirror.bm.debian.org/debian/ jessie/main java-wrappers all 0.1.28 [10.7 kB] Get:1018 http://mirror.bm.debian.org/debian/ jessie/main icedtea-netx-common all 1.5.3-1 [1131 kB] Get:1019 http://mirror.bm.debian.org/debian/ jessie/main javahelp2 all 2.0.05.ds1-7 [886 kB] Get:1020 http://mirror.bm.debian.org/debian/ jessie/main libcommons-io-java all 2.4-2 [176 kB] Get:1021 http://mirror.bm.debian.org/debian/ jessie/main libapache-mime4j-java all 0.7.2-3 [381 kB] Get:1022 http://mirror.bm.debian.org/debian/ jessie/main libwsdl4j-java all 1.6.3-1 [177 kB] Get:1023 http://mirror.bm.debian.org/debian/ jessie/main libaxis-java all 1.4-22 [1495 kB] Get:1024 http://mirror.bm.debian.org/debian/ jessie/main libcastor-core-java all 1.3.2-3 [51.8 kB] Get:1025 http://mirror.bm.debian.org/debian/ jessie/main libcastor-xml-java all 1.3.2-3 [713 kB] Get:1026 http://mirror.bm.debian.org/debian/ jessie/main libhttpmime-java all 4.3.5-2 [73.8 kB] Get:1027 http://mirror.bm.debian.org/debian/ jessie/main libhttpcore-java all 4.3.3-1 [539 kB] Get:1028 http://mirror.bm.debian.org/debian/ jessie/main libhttpclient-java all 4.3.5-2 [549 kB] Get:1029 http://mirror.bm.debian.org/debian/ jessie/main libmiglayout-java all 4.2-1 [97.9 kB] Get:1030 http://mirror.bm.debian.org/debian/ jessie/main openjdk-7-jdk amd64 7u111-2.6.7-1~deb8u1 [16.4 MB] Get:1031 http://mirror.bm.debian.org/debian/ jessie/main jalview all 2.7.dfsg-4 [3382 kB] Get:1032 http://mirror.bm.debian.org/debian/ jessie/main javascript-common all 11 [6120 B] Get:1033 http://mirror.bm.debian.org/debian/ jessie/main libjellyfish-2.0-2 amd64 2.1.4-1 [63.6 kB] Get:1034 http://mirror.bm.debian.org/debian/ jessie/main jellyfish amd64 2.1.4-1 [347 kB] Get:1035 http://mirror.bm.debian.org/debian/ jessie/main libbcprov-java all 1.49+dfsg-3+deb8u2 [2002 kB] Get:1036 http://mirror.bm.debian.org/debian/ jessie/main libbcpkix-java all 1.49+dfsg-3+deb8u2 [533 kB] Get:1037 http://mirror.bm.debian.org/debian/ jessie/main libbcmail-java all 1.49+dfsg-3+deb8u2 [116 kB] Get:1038 http://mirror.bm.debian.org/debian/ jessie/main libitext-java all 2.1.7-9 [1070 kB] Get:1039 http://mirror.bm.debian.org/debian/ jessie/main king all 2.21.120420+dfsg-1 [1779 kB] Get:1040 http://mirror.bm.debian.org/debian/ jessie/main kissplice amd64 2.2.1-3 [601 kB] Get:1041 http://mirror.bm.debian.org/debian/ jessie/main ksh amd64 93u+20120801-1 [1583 kB] Get:1042 http://mirror.bm.debian.org/debian/ jessie/main last-align amd64 490-1 [458 kB] Get:1043 http://mirror.bm.debian.org/debian/ jessie/main libapache-dbi-perl all 1.12-1 [54.6 kB] Get:1044 http://mirror.bm.debian.org/debian/ jessie/main libarchive-extract-perl all 0.72-1 [24.8 kB] Get:1045 http://mirror.bm.debian.org/debian/ jessie/main libclass-method-modifiers-perl all 2.11-1 [18.5 kB] Get:1046 http://mirror.bm.debian.org/debian/ jessie/main libimport-into-perl all 1.002004-1 [11.5 kB] Get:1047 http://mirror.bm.debian.org/debian/ jessie/main librole-tiny-perl all 1.003004-1 [19.4 kB] Get:1048 http://mirror.bm.debian.org/debian/ jessie/main libstrictures-perl all 1.005005-1 [13.5 kB] Get:1049 http://mirror.bm.debian.org/debian/ jessie/main libmoo-perl all 1.006001-1 [62.7 kB] Get:1050 http://mirror.bm.debian.org/debian/ jessie/main libexporter-tiny-perl all 0.038-2 [28.7 kB] Get:1051 http://mirror.bm.debian.org/debian/ jessie/main libtype-tiny-perl all 1.000004-1 [269 kB] Get:1052 http://mirror.bm.debian.org/debian/ jessie/main libarray-compare-perl all 2.11-1 [14.2 kB] Get:1053 http://mirror.bm.debian.org/debian/ jessie/main libasprintf-dev amd64 0.19.3-2 [31.1 kB] Get:1054 http://mirror.bm.debian.org/debian/ jessie/main libasync-interrupt-perl amd64 1.20-1+b1 [33.8 kB] Get:1055 http://mirror.bm.debian.org/debian/ jessie/main libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:1056 http://mirror.bm.debian.org/debian/ jessie/main libb-hooks-op-check-perl amd64 0.19-2+b1 [11.3 kB] Get:1057 http://mirror.bm.debian.org/debian/ jessie/main libbambamc0 amd64 0.0.50-1 [35.4 kB] Get:1058 http://mirror.bm.debian.org/debian/ jessie/main liblexical-sealrequirehints-perl amd64 0.007-1+b2 [14.4 kB] Get:1059 http://mirror.bm.debian.org/debian/ jessie/main libbareword-filehandles-perl amd64 0.003-1+b2 [8922 B] Get:1060 http://mirror.bm.debian.org/debian/ jessie/main libbio-asn1-entrezgene-perl all 1.700-1 [40.9 kB] Get:1061 http://mirror.bm.debian.org/debian/ jessie/main libcanberra-gtk3-module amd64 0.30-2.1 [16.8 kB] Get:1062 http://mirror.bm.debian.org/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213 kB] Get:1063 http://mirror.bm.debian.org/debian/ jessie/main libcgi-fast-perl all 1:2.04-1 [10.9 kB] Get:1064 http://mirror.bm.debian.org/debian/ jessie/main libclass-tiny-perl all 1.000-1 [17.8 kB] Get:1065 http://mirror.bm.debian.org/debian/ jessie/main libclass-xsaccessor-perl amd64 1.19-2+b4 [39.0 kB] Get:1066 http://mirror.bm.debian.org/debian/ jessie/main libcofoja-java all 1.1-r150-2 [608 kB] Get:1067 http://mirror.bm.debian.org/debian/ jessie/main libcommons-jexl2-java all 2.1.1-2 [245 kB] Get:1068 http://mirror.bm.debian.org/debian/ jessie/main libcommons-lang-java all 2.6-4 [269 kB] Get:1069 http://mirror.bm.debian.org/debian/ jessie/main libcpan-meta-perl all 2.142690-1 [125 kB] Get:1070 http://mirror.bm.debian.org/debian/ jessie/main libcrypt-rc4-perl all 2.02-2 [8150 B] Get:1071 http://mirror.bm.debian.org/debian/ jessie/main libdata-section-perl all 0.200006-1 [13.4 kB] Get:1072 http://mirror.bm.debian.org/debian/ jessie/main libdate-manip-perl all 6.47-1 [923 kB] Get:1073 http://mirror.bm.debian.org/debian/ jessie/main libpadwalker-perl amd64 1.98-1+b1 [20.7 kB] Get:1074 http://mirror.bm.debian.org/debian/ jessie/main libdevel-caller-perl amd64 2.06-1+b2 [12.7 kB] Get:1075 http://mirror.bm.debian.org/debian/ jessie/main libdevel-lexalias-perl amd64 0.05-1+b2 [9686 B] Get:1076 http://mirror.bm.debian.org/debian/ jessie/main libdevel-partialdump-perl all 0.17-1 [14.5 kB] Get:1077 http://mirror.bm.debian.org/debian/ jessie/main libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:1078 http://mirror.bm.debian.org/debian/ jessie/main libfile-chdir-perl all 0.1008-1 [13.3 kB] Get:1079 http://mirror.bm.debian.org/debian/ jessie/main libfile-copy-recursive-perl all 0.38-1 [20.6 kB] Get:1080 http://mirror.bm.debian.org/debian/ jessie/main libfile-desktopentry-perl all 0.07-1 [18.5 kB] Get:1081 http://mirror.bm.debian.org/debian/ jessie/main libfile-which-perl all 1.09-1 [13.1 kB] Get:1082 http://mirror.bm.debian.org/debian/ jessie/main libfile-homedir-perl all 1.00-1 [48.9 kB] Get:1083 http://mirror.bm.debian.org/debian/ jessie/main libfile-mimeinfo-perl all 0.26-1 [50.1 kB] Get:1084 http://mirror.bm.debian.org/debian/ jessie/main libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:1085 http://mirror.bm.debian.org/debian/ jessie/main libg20 amd64 0.72-5+b1 [42.6 kB] Get:1086 http://mirror.bm.debian.org/debian/ jessie/main libgcj-common all 1:4.9.1-7 [160 kB] Get:1087 http://mirror.bm.debian.org/debian/ jessie/main libgconf2-4 amd64 3.2.6-3 [358 kB] Get:1088 http://mirror.bm.debian.org/debian/ jessie/main libgeronimo-jta-1.1-spec-java all 1.1.1-3 [12.0 kB] Get:1089 http://mirror.bm.debian.org/debian/ jessie/main libgettextpo-dev amd64 0.19.3-2 [153 kB] Get:1090 http://mirror.bm.debian.org/debian/ jessie/main libglib2.0-data all 2.42.1-1 [2173 kB] Get:1091 http://mirror.bm.debian.org/debian/ jessie/main libgmp-dev amd64 2:6.0.0+dfsg-6 [621 kB] Get:1092 http://mirror.bm.debian.org/debian/ jessie/main libgnome2-bin amd64 2.32.1-5 [434 kB] Get:1093 http://mirror.bm.debian.org/debian/ jessie/main libgnome2-0 amd64 2.32.1-5 [430 kB] Get:1094 http://mirror.bm.debian.org/debian/ jessie/main libgnomevfs2-extra amd64 1:2.24.4-6+b1 [366 kB] Get:1095 http://mirror.bm.debian.org/debian/ jessie/main libgnumail-java all 1.1.2-9 [287 kB] Get:1096 http://mirror.bm.debian.org/debian/ jessie/main libgraphviz-perl all 2.16-1 [111 kB] Get:1097 http://mirror.bm.debian.org/debian/ jessie/main libgo-perl all 0.15-1 [311 kB] Get:1098 http://mirror.bm.debian.org/debian/ jessie/main libgphoto2-l10n all 2.5.4-1.1 [440 kB] Get:1099 http://mirror.bm.debian.org/debian/ jessie/main libgraph-perl all 1:0.96-1.1 [126 kB] Get:1100 http://mirror.bm.debian.org/debian/ jessie/main libguard-perl amd64 1.022-2+b1 [16.5 kB] Get:1101 http://mirror.bm.debian.org/debian/ jessie/main libhtml-format-perl all 2.11-1 [43.1 kB] Get:1102 http://mirror.bm.debian.org/debian/ jessie/main libhtml-tableextract-perl all 2.11-1 [32.0 kB] Get:1103 http://mirror.bm.debian.org/debian/ jessie/main libhtml-template-perl all 2.95-1 [66.8 kB] Get:1104 http://mirror.bm.debian.org/debian/ jessie/main libindirect-perl amd64 0.33-1 [26.4 kB] Get:1105 http://mirror.bm.debian.org/debian/ jessie/main libjs-underscore all 1.7.0~dfsg-1 [49.9 kB] Get:1106 http://mirror.bm.debian.org/debian/ jessie/main libjs-sphinxdoc all 1.2.3+dfsg-1 [41.1 kB] Get:1107 http://mirror.bm.debian.org/debian/ jessie/main liblensfun-data all 0.2.8-2 [82.3 kB] Get:1108 http://mirror.bm.debian.org/debian/ jessie/main liblensfun0 amd64 0.2.8-2 [46.6 kB] Get:1109 http://mirror.bm.debian.org/debian/ jessie/main liblog-message-perl all 0.8-1 [26.0 kB] Get:1110 http://mirror.bm.debian.org/debian/ jessie/main liblog-message-simple-perl all 0.10-2 [8126 B] Get:1111 http://mirror.bm.debian.org/debian/ jessie/main liblog4cpp5 amd64 1.0-4 [129 kB] Get:1112 http://mirror.bm.debian.org/debian/ jessie/main liblzma-dev amd64 5.1.1alpha+20120614-2+b3 [256 kB] Get:1113 http://mirror.bm.debian.org/debian/ jessie/main libmagickcore-6.q16-2-extra amd64 8:6.8.9.9-5+deb8u11 [174 kB] Get:1114 http://mirror.bm.debian.org/debian/ jessie/main libsys-hostname-long-perl all 1.4-3 [11.6 kB] Get:1115 http://mirror.bm.debian.org/debian/ jessie/main libmail-sendmail-perl all 0.79.16-1 [26.6 kB] Get:1116 http://mirror.bm.debian.org/debian/ jessie/main libmath-spline-perl all 0.02-1 [7992 B] Get:1117 http://mirror.bm.debian.org/debian/ jessie/main libmldbm-perl all 2.05-1 [18.3 kB] Get:1118 http://mirror.bm.debian.org/debian/ jessie/main libmodule-build-perl all 0.421000-2+deb8u1 [265 kB] Get:1119 http://mirror.bm.debian.org/debian/ jessie/main libmodule-pluggable-perl all 5.1-1 [25.0 kB] Get:1120 http://mirror.bm.debian.org/debian/ jessie/main libmodule-signature-perl all 0.73-1+deb8u2 [30.4 kB] Get:1121 http://mirror.bm.debian.org/debian/ jessie/main libmopac7-1gf amd64 1.15-6 [487 kB] Get:1122 http://mirror.bm.debian.org/debian/ jessie/main libmultidimensional-perl amd64 0.010-1+b2 [8506 B] Get:1123 http://mirror.bm.debian.org/debian/ jessie/main libnb-org-openide-util-lookup-java all 7.4+dfsg1-2 [77.0 kB] Get:1124 http://mirror.bm.debian.org/debian/ jessie/main libnb-org-openide-util-java all 7.4+dfsg1-2 [160 kB] Get:1125 http://mirror.bm.debian.org/debian/ jessie/main libncursesw5-dev amd64 5.9+20140913-1+deb8u2 [203 kB] Get:1126 http://mirror.bm.debian.org/debian/ jessie/main netpbm amd64 2:10.0-15.2 [994 kB] Get:1127 http://mirror.bm.debian.org/debian/ jessie/main libnetpbm10 amd64 2:10.0-15.2 [84.4 kB] Get:1128 http://mirror.bm.debian.org/debian/ jessie/main libopenbabel4 amd64 2.3.2+dfsg-2 [2913 kB] Get:1129 http://mirror.bm.debian.org/debian/ jessie/main libsvm3 amd64 3.12-1 [48.4 kB] Get:1130 http://mirror.bm.debian.org/debian/ jessie/main openms-common all 1.11.1-5 [28.4 MB] Get:1131 http://mirror.bm.debian.org/debian/ jessie/main libopenms1.11 amd64 1.11.1-5 [5113 kB] Get:1132 http://mirror.bm.debian.org/debian/ jessie/main libpackage-constants-perl all 0.04-1 [5820 B] Get:1133 http://mirror.bm.debian.org/debian/ jessie/main libpam-cap amd64 1:2.24-8 [12.5 kB] Get:1134 http://mirror.bm.debian.org/debian/ jessie/main libpaper-utils amd64 1.1.24+nmu4 [17.5 kB] Get:1135 http://mirror.bm.debian.org/debian/ jessie/main libpod-coverage-perl all 0.23-1 [23.9 kB] Get:1136 http://mirror.bm.debian.org/debian/ jessie/main libpod-latex-perl all 0.61-1 [34.7 kB] Get:1137 http://mirror.bm.debian.org/debian/ jessie/main libpod-readme-perl all 0.11-1 [15.3 kB] Get:1138 http://mirror.bm.debian.org/debian/ jessie/main libpython-dev amd64 2.7.9-1 [19.6 kB] Get:1139 http://mirror.bm.debian.org/debian/ jessie/main libpython-all-dev amd64 2.7.9-1 [1008 B] Get:1140 http://mirror.bm.debian.org/debian/ jessie/main libsane-extras-common amd64 1.0.22.3 [12.8 kB] Get:1141 http://mirror.bm.debian.org/debian/ jessie/main libsane-extras amd64 1.0.22.3 [67.4 kB] Get:1142 http://mirror.bm.debian.org/debian/ jessie/main libsnp-sites1 amd64 1.5.0-1 [11.0 kB] Get:1143 http://mirror.bm.debian.org/debian/ jessie/main libtext-template-perl all 1.46-1 [53.1 kB] Get:1144 http://mirror.bm.debian.org/debian/ jessie/main libsoftware-license-perl all 0.103010-3 [119 kB] Get:1145 http://mirror.bm.debian.org/debian/ jessie/main libsort-naturally-perl all 1.03-1 [13.9 kB] Get:1146 http://mirror.bm.debian.org/debian/ jessie/main libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:1147 http://mirror.bm.debian.org/debian/ jessie/main libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:1148 http://mirror.bm.debian.org/debian/ jessie/main libsquizz amd64 0.99b+dfsg-3 [273 kB] Get:1149 http://mirror.bm.debian.org/debian/ jessie/main libsvg-perl all 2.59-1 [75.2 kB] Get:1150 http://mirror.bm.debian.org/debian/ jessie/main libtcmalloc-minimal4 amd64 2.2.1-0.2 [128 kB] Get:1151 http://mirror.bm.debian.org/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1 kB] Get:1152 http://mirror.bm.debian.org/debian/ jessie/main libtest-pod-perl all 1.48-1 [14.0 kB] Get:1153 http://mirror.bm.debian.org/debian/ jessie/main libtext-soundex-perl amd64 3.4-1+b2 [13.7 kB] Get:1154 http://mirror.bm.debian.org/debian/ jessie/main libtie-ixhash-perl all 1.23-1 [12.2 kB] Get:1155 http://mirror.bm.debian.org/debian/ jessie/main libtree-dagnode-perl all 1.22-1 [59.5 kB] Get:1156 http://mirror.bm.debian.org/debian/ jessie/main libtype-tiny-xs-perl amd64 0.010-1 [27.1 kB] Get:1157 http://mirror.bm.debian.org/debian/ jessie/main libvisual-0.4-plugins amd64 0.4.0.dfsg.1-7 [147 kB] Get:1158 http://mirror.bm.debian.org/debian/ jessie/main libx11-protocol-perl all 0.56-6 [150 kB] Get:1159 http://mirror.bm.debian.org/debian/ jessie/main libxml-checker-perl all 0.13-6 [44.9 kB] Get:1160 http://mirror.bm.debian.org/debian/ jessie/main libxml-sax-writer-perl all 0.54-1 [23.4 kB] Get:1161 http://mirror.bm.debian.org/debian/ jessie/main libxml-writer-perl all 0.625-1 [29.7 kB] Get:1162 http://mirror.bm.debian.org/debian/ jessie/main libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:1163 http://mirror.bm.debian.org/debian/ jessie/main libyaml-perl all 1.13-1 [69.7 kB] Get:1164 http://mirror.bm.debian.org/debian/ jessie/main libyaml-tiny-perl all 1.64-1 [31.8 kB] Get:1165 http://mirror.bm.debian.org/debian/ jessie/main libzeep3.0 amd64 3.0.2-1+b2 [418 kB] Get:1166 http://mirror.bm.debian.org/debian/ jessie/main zip amd64 3.0-8 [228 kB] Get:1167 http://mirror.bm.debian.org/debian/ jessie/main xdg-utils all 1.1.0~rc1+git20111210-7.4 [65.0 kB] Get:1168 http://mirror.bm.debian.org/debian/ jessie/main r-base-core amd64 3.1.1-1+deb8u1 [19.9 MB] Get:1169 http://mirror.bm.debian.org/debian/ jessie/main littler amd64 0.2.1-1 [36.2 kB] Get:1170 http://mirror.bm.debian.org/debian/ jessie/main lksctp-tools amd64 1.0.16+dfsg-2 [62.6 kB] Get:1171 http://mirror.bm.debian.org/debian/ jessie/main lmodern all 2.004.4-5 [9469 kB] Get:1172 http://mirror.bm.debian.org/debian/ jessie/main swi-prolog-nox amd64 6.6.6-5 [2818 kB] Get:1173 http://mirror.bm.debian.org/debian/ jessie/main swi-prolog-x amd64 6.6.6-5 [2010 kB] Get:1174 http://mirror.bm.debian.org/debian/ jessie/main swi-prolog amd64 6.6.6-5 [16.0 kB] Get:1175 http://mirror.bm.debian.org/debian/ jessie/main logol-bin amd64 1.7.0-2 [138 kB] Get:1176 http://mirror.bm.debian.org/debian/ jessie/main loki amd64 2.4.7.4-5 [342 kB] Get:1177 http://mirror.bm.debian.org/debian/ jessie/main genometools-common all 1.5.3-2 [139 kB] Get:1178 http://mirror.bm.debian.org/debian/ jessie/main libgenometools0 amd64 1.5.3-2 [1664 kB] Get:1179 http://mirror.bm.debian.org/debian/ jessie/main ltrsift amd64 1.0.2-1 [127 kB] Get:1180 http://mirror.bm.debian.org/debian/ jessie/main macs amd64 2.0.9.1-1 [484 kB] Get:1181 http://mirror.bm.debian.org/debian/ jessie/main manpages-dev all 3.74-1 [1865 kB] Get:1182 http://mirror.bm.debian.org/debian/ jessie/main mapsembler2 amd64 2.1.6+dfsg-1 [279 kB] Get:1183 http://mirror.bm.debian.org/debian/ jessie/main maqview amd64 0.2.5-6 [301 kB] Get:1184 http://mirror.bm.debian.org/debian/ jessie/main massxpert amd64 3.4.1-1 [1172 kB] Get:1185 http://mirror.bm.debian.org/debian/ jessie/main massxpert-data all 3.4.1-1 [244 kB] Get:1186 http://mirror.bm.debian.org/debian/ jessie/main melting amd64 4.3.1+dfsg-1 [663 kB] Get:1187 http://mirror.bm.debian.org/debian/ jessie/main metastudent all 1.0.11-2 [5946 kB] Get:1188 http://mirror.bm.debian.org/debian/ jessie/main nast-ier amd64 20101212+dfsg-1 [20.0 kB] Get:1189 http://mirror.bm.debian.org/debian/ jessie/main wigeon all 20101212+dfsg-1 [29.5 kB] Get:1190 http://mirror.bm.debian.org/debian/ jessie/main microbiomeutil all 20101212+dfsg-1 [18.6 kB] Get:1191 http://mirror.bm.debian.org/debian/ jessie/main minia amd64 1.6088-1 [67.9 kB] Get:1192 http://mirror.bm.debian.org/debian/ jessie/main mira-assembler amd64 4.0.2-1+b1 [1403 kB] Get:1193 http://mirror.bm.debian.org/debian/ jessie/main mothur amd64 1.33.3+dfsg-2 [3740 kB] Get:1194 http://mirror.bm.debian.org/debian/ jessie/main mrbayes amd64 3.2.3+dfsg-1 [576 kB] Get:1195 http://mirror.bm.debian.org/debian/ jessie/main rsync amd64 3.1.1-3 [390 kB] Get:1196 http://mirror.bm.debian.org/debian/ jessie/main mrs amd64 6.0.5+dfsg-1 [904 kB] Get:1197 http://mirror.bm.debian.org/debian/ jessie/main mustang amd64 3.2.2-1 [112 kB] Get:1198 http://mirror.bm.debian.org/debian/ jessie/main ncbi-blast+ amd64 2.2.29-3 [7965 kB] Get:1199 http://mirror.bm.debian.org/debian/ jessie/main ncbi-epcr amd64 2.3.12-1-2 [122 kB] Get:1200 http://mirror.bm.debian.org/debian/ jessie/main ncbi-tools-bin amd64 6.1.20120620-8 [501 kB] Get:1201 http://mirror.bm.debian.org/debian/ jessie/main ncoils amd64 2002-4 [21.0 kB] Get:1202 http://mirror.bm.debian.org/debian/ jessie/main notification-daemon amd64 0.7.6-2 [51.4 kB] Get:1203 http://mirror.bm.debian.org/debian/ jessie/main topp amd64 1.11.1-5 [7258 kB] Get:1204 http://mirror.bm.debian.org/debian/ jessie/main openms all 1.11.1-5 [30.0 kB] Get:1205 http://mirror.bm.debian.org/debian/ jessie/main paraclu amd64 9-1 [9976 B] Get:1206 http://mirror.bm.debian.org/debian/ jessie/main parsinsert amd64 1.04-1 [63.5 kB] Get:1207 http://mirror.bm.debian.org/debian/ jessie/main pdb2pqr amd64 1.9.0+dfsg-1 [367 kB] Get:1208 http://mirror.bm.debian.org/debian/ jessie/main perlprimer all 1.1.21-2 [96.3 kB] Get:1209 http://mirror.bm.debian.org/debian/ jessie/main perm amd64 0.4.0-1 [114 kB] Get:1210 http://mirror.bm.debian.org/debian/ jessie/main phylip amd64 1:3.696+dfsg-1 [681 kB] Get:1211 http://mirror.bm.debian.org/debian/ jessie/main phyml amd64 2:20120412-2 [939 kB] Get:1212 http://mirror.bm.debian.org/debian/ jessie/main phyutility amd64 2.7.3-1 [897 kB] Get:1213 http://mirror.bm.debian.org/debian/ jessie/main picard-tools all 1.113-1 [650 kB] Get:1214 http://mirror.bm.debian.org/debian/ jessie/main plasmidomics all 0.2.0-3 [6574 B] Get:1215 http://mirror.bm.debian.org/debian/ jessie/main prank amd64 0.0.140110-1 [327 kB] Get:1216 http://mirror.bm.debian.org/debian/ jessie/main texlive-base all 2014.20141024-2+deb8u1 [17.7 MB] Get:1217 http://mirror.bm.debian.org/debian/ jessie/main texlive-latex-base all 2014.20141024-2+deb8u1 [858 kB] Get:1218 http://mirror.bm.debian.org/debian/ jessie/main texlive-latex-recommended all 2014.20141024-2+deb8u1 [7630 kB] Get:1219 http://mirror.bm.debian.org/debian/ jessie/main texlive-pictures all 2014.20141024-2+deb8u1 [3039 kB] Get:1220 http://mirror.bm.debian.org/debian/ jessie/main texlive-generic-recommended all 2014.20141024-2+deb8u1 [2143 kB] Get:1221 http://mirror.bm.debian.org/debian/ jessie/main prerex amd64 6.5.3-1 [598 kB] Get:1222 http://mirror.bm.debian.org/debian/ jessie/main preview-latex-style all 11.87-3+deb8u1 [318 kB] Get:1223 http://mirror.bm.debian.org/debian/ jessie/main prime-phylo amd64 1.0.11-2 [877 kB] Get:1224 http://mirror.bm.debian.org/debian/ jessie/main primer3 amd64 2.3.6-1 [168 kB] Get:1225 http://mirror.bm.debian.org/debian/ jessie/main proalign amd64 0.603-1 [150 kB] Get:1226 http://mirror.bm.debian.org/debian/ jessie/main probabel amd64 0.4.3-2 [524 kB] Get:1227 http://mirror.bm.debian.org/debian/ jessie/main probalign amd64 1.4-3 [67.9 kB] Get:1228 http://mirror.bm.debian.org/debian/ jessie/main prodigal amd64 1:2.6.1-1 [690 kB] Get:1229 http://mirror.bm.debian.org/debian/ jessie/main texlive-pstricks all 2014.20141024-1 [26.2 MB] Get:1230 http://mirror.bm.debian.org/debian/ jessie/main prosper all 1.00.4+cvs.2007.05.01-4 [461 kB] Get:1231 http://mirror.bm.debian.org/debian/ jessie/main ps2eps amd64 1.68+binaryfree-1 [37.7 kB] Get:1232 http://mirror.bm.debian.org/debian/ jessie/main psutils amd64 1.17.dfsg-2 [58.8 kB] Get:1233 http://mirror.bm.debian.org/debian/ jessie/main python-wxversion all 3.0.1.1+dfsg-2 [113 kB] Get:1234 http://mirror.bm.debian.org/debian/ jessie/main python-wxgtk3.0 amd64 3.0.1.1+dfsg-2 [5195 kB] Get:1235 http://mirror.bm.debian.org/debian/ jessie/main python-yaml amd64 3.11-2 [112 kB] Get:1236 http://mirror.bm.debian.org/debian/ jessie/main pycorrfit all 0.8.3-2 [761 kB] Get:1237 http://mirror.bm.debian.org/debian/ jessie/main pymol amd64 1.7.2.1-1 [4867 kB] Get:1238 http://mirror.bm.debian.org/debian/ jessie/main sphinx-common all 1.2.3+dfsg-1 [407 kB] Get:1239 http://mirror.bm.debian.org/debian/ jessie/main pyqi all 0.3.2+dfsg-1 [73.6 kB] Get:1240 http://mirror.bm.debian.org/debian/ jessie/main python-pyfits amd64 1:3.3-2+b1 [394 kB] Get:1241 http://mirror.bm.debian.org/debian/ jessie/main python-multipletau all 0.1.4-1 [7318 B] Get:1242 http://mirror.bm.debian.org/debian/ jessie/main pyscanfcs amd64 0.2.2-2 [518 kB] Get:1243 http://mirror.bm.debian.org/debian/ jessie/main python-all amd64 2.7.9-1 [996 B] Get:1244 http://mirror.bm.debian.org/debian/ jessie/main python2.7-dev amd64 2.7.9-2+deb8u1 [290 kB] Get:1245 http://mirror.bm.debian.org/debian/ jessie/main python-dev amd64 2.7.9-1 [1182 B] Get:1246 http://mirror.bm.debian.org/debian/ jessie/main python-all-dev amd64 2.7.9-1 [1024 B] Get:1247 http://mirror.bm.debian.org/debian/ jessie/main python-cogent amd64 1.5.3-2 [1269 kB] Get:1248 http://mirror.bm.debian.org/debian/ jessie/main python-h5py amd64 2.2.1-1.1+b1 [511 kB] Get:1249 http://mirror.bm.debian.org/debian/ jessie/main python-biom-format amd64 2.1+dfsg-1 [214 kB] Get:1250 http://mirror.bm.debian.org/debian/ jessie/main python-biopython-doc all 1.64+dfsg-5 [9763 kB] Get:1251 http://mirror.bm.debian.org/debian/ jessie/main python-chardet all 2.3.0-1 [96.2 kB] Get:1252 http://mirror.bm.debian.org/debian/ jessie/main python-crypto amd64 2.6.1-5+deb8u1 [256 kB] Get:1253 http://mirror.bm.debian.org/debian/ jessie/main python-roman all 2.0.0-1 [7898 B] Get:1254 http://mirror.bm.debian.org/debian/ jessie/main python-docutils all 0.12+dfsg-1 [361 kB] Get:1255 http://mirror.bm.debian.org/debian/ jessie/main python-egenix-mxtools amd64 3.2.8-1 [77.7 kB] Get:1256 http://mirror.bm.debian.org/debian/ jessie/main python-egenix-mxdatetime amd64 3.2.8-1 [71.3 kB] Get:1257 http://mirror.bm.debian.org/debian/ jessie/main python-gobject-2 amd64 2.28.6-12+b1 [348 kB] Get:1258 http://mirror.bm.debian.org/debian/ jessie/main python-glade2 amd64 2.24.0-4 [43.3 kB] Get:1259 http://mirror.bm.debian.org/debian/ jessie/main python-gtk2 amd64 2.24.0-4 [637 kB] Get:1260 http://mirror.bm.debian.org/debian/ jessie/main python-gmpy amd64 1.15-1 [171 kB] Get:1261 http://mirror.bm.debian.org/debian/ jessie/main python-imaging all 2.6.1-2+deb8u3 [9846 B] Get:1262 http://mirror.bm.debian.org/debian/ jessie/main python-pil amd64 2.6.1-2+deb8u3 [304 kB] Get:1263 http://mirror.bm.debian.org/debian/ jessie/main python-markupsafe amd64 0.23-1+b1 [15.9 kB] Get:1264 http://mirror.bm.debian.org/debian/ jessie/main python-jinja2 all 2.7.3-1 [170 kB] Get:1265 http://mirror.bm.debian.org/debian/ jessie/main python-lxml amd64 3.4.0-1 [754 kB] Get:1266 http://mirror.bm.debian.org/debian/ jessie/main python-mako all 1.0.0+dfsg-0.1 [61.4 kB] Get:1267 http://mirror.bm.debian.org/debian/ jessie/main python-mpmath all 0.19-1 [402 kB] Get:1268 http://mirror.bm.debian.org/debian/ jessie/main python-mysqldb amd64 1.2.3-2.1 [62.2 kB] Get:1269 http://mirror.bm.debian.org/debian/ jessie/main python-pyglet all 1.1.4.dfsg-2 [970 kB] Get:1270 http://mirror.bm.debian.org/debian/ jessie/main python-pygments all 2.0.1+dfsg-1.1+deb8u1 [482 kB] Get:1271 http://mirror.bm.debian.org/debian/ jessie/main python-qcli amd64 0.1.0-1 [13.4 kB] Get:1272 http://mirror.bm.debian.org/debian/ jessie/main python-renderpm amd64 3.1.8-3+deb8u1 [35.6 kB] Get:1273 http://mirror.bm.debian.org/debian/ jessie/main python-sphinx all 1.2.3+dfsg-1 [271 kB] Get:1274 http://mirror.bm.debian.org/debian/ jessie/main python-sqlalchemy-ext amd64 0.9.8+dfsg-0.1 [18.6 kB] Get:1275 http://mirror.bm.debian.org/debian/ jessie/main python-sqlalchemy all 0.9.8+dfsg-0.1 [604 kB] Get:1276 http://mirror.bm.debian.org/debian/ jessie/main python-sympy all 0.7.5-3 [2448 kB] Get:1277 http://mirror.bm.debian.org/debian/ jessie/main qiime-data all 1.8.0+dfsg-4 [1360 kB] Get:1278 http://mirror.bm.debian.org/debian/ jessie/main r-base-dev all 3.1.1-1+deb8u1 [4024 B] Get:1279 http://mirror.bm.debian.org/debian/ jessie/main r-cran-dbi amd64 0.3.1-1 [157 kB] Get:1280 http://mirror.bm.debian.org/debian/ jessie/main r-cran-rsqlite amd64 0.11.4-3 [305 kB] Get:1281 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-biocgenerics all 0.10.0-1 [397 kB] Get:1282 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-biobase amd64 2.24.0-1 [2198 kB] Get:1283 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-iranges amd64 1.22.10-1 [1827 kB] Get:1284 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-genomeinfodb all 1.0.2-2 [221 kB] Get:1285 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-annotationdbi all 1.26.1-1 [4178 kB] Get:1286 http://mirror.bm.debian.org/debian/ jessie/main r-cran-codetools all 0.2-9-1 [45.7 kB] Get:1287 http://mirror.bm.debian.org/debian/ jessie/main r-cran-iterators all 1.0.7-1 [306 kB] Get:1288 http://mirror.bm.debian.org/debian/ jessie/main r-cran-foreach all 1.4.2-1 [371 kB] Get:1289 http://mirror.bm.debian.org/debian/ jessie/main r-cran-checkmate amd64 1.5.0-1 [255 kB] Get:1290 http://mirror.bm.debian.org/debian/ jessie/main r-cran-bbmisc amd64 1.7-1 [264 kB] Get:1291 http://mirror.bm.debian.org/debian/ jessie/main r-cran-brew amd64 1.0-6-1 [61.4 kB] Get:1292 http://mirror.bm.debian.org/debian/ jessie/main r-cran-digest amd64 0.6.4-1 [81.5 kB] Get:1293 http://mirror.bm.debian.org/debian/ jessie/main r-cran-pkgkitten all 0.1.2-1 [17.1 kB] Get:1294 http://mirror.bm.debian.org/debian/ jessie/main r-cran-rcpp amd64 0.11.3-1 [2044 kB] Get:1295 http://mirror.bm.debian.org/debian/ jessie/main r-cran-plyr amd64 1.8.1-2 [738 kB] Get:1296 http://mirror.bm.debian.org/debian/ jessie/main r-cran-stringr all 0.6.2-2 [71.8 kB] Get:1297 http://mirror.bm.debian.org/debian/ jessie/main r-cran-base64enc amd64 0.1-2-1 [19.9 kB] Get:1298 http://mirror.bm.debian.org/debian/ jessie/main r-cran-sendmailr amd64 1.2-1-1 [29.0 kB] Get:1299 http://mirror.bm.debian.org/debian/ jessie/main r-cran-fail amd64 1.2-1 [42.5 kB] Get:1300 http://mirror.bm.debian.org/debian/ jessie/main r-cran-batchjobs amd64 1.4-1 [407 kB] Get:1301 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-biocparallel all 0.6.1-1 [321 kB] Get:1302 http://mirror.bm.debian.org/debian/ jessie/main r-cran-xml amd64 3.98-1.1-1 [1809 kB] Get:1303 http://mirror.bm.debian.org/debian/ jessie/main r-cran-bitops amd64 1.0-6-1 [22.3 kB] Get:1304 http://mirror.bm.debian.org/debian/ jessie/main r-cran-rcurl amd64 1.95-4.3-1+deb8u1 [527 kB] Get:1305 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-biomart all 2.20.0-1 [365 kB] Get:1306 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-xvector amd64 0.4.0-1 [333 kB] Get:1307 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-biostrings amd64 2.32.1-1 [2251 kB] Get:1308 http://mirror.bm.debian.org/debian/ jessie/main r-cran-dichromat all 2.0.0-3 [146 kB] Get:1309 http://mirror.bm.debian.org/debian/ jessie/main r-cran-foreign amd64 0.8.61-1 [213 kB] Get:1310 http://mirror.bm.debian.org/debian/ jessie/main r-cran-chron amd64 2.3-45-1 [102 kB] Get:1311 http://mirror.bm.debian.org/debian/ jessie/main r-cran-lattice amd64 0.20-29-1 [713 kB] Get:1312 http://mirror.bm.debian.org/debian/ jessie/main r-cran-cluster amd64 1.15.3-1 [475 kB] Get:1313 http://mirror.bm.debian.org/debian/ jessie/main r-cran-survival amd64 2.37-7-1 [4443 kB] Get:1314 http://mirror.bm.debian.org/debian/ jessie/main r-cran-formula all 1.1-2-1 [159 kB] Get:1315 http://mirror.bm.debian.org/debian/ jessie/main r-cran-rpart amd64 4.1-8-1 [862 kB] Get:1316 http://mirror.bm.debian.org/debian/ jessie/main r-cran-rcolorbrewer all 1.0-5-2 [25.5 kB] Get:1317 http://mirror.bm.debian.org/debian/ jessie/main r-cran-latticeextra amd64 0.6-26-1 [2065 kB] Get:1318 http://mirror.bm.debian.org/debian/ jessie/main r-cran-hmisc amd64 3.14-5-1 [1526 kB] Get:1319 http://mirror.bm.debian.org/debian/ jessie/main r-cran-nnet amd64 7.3-8-1 [94.2 kB] Get:1320 http://mirror.bm.debian.org/debian/ jessie/main r-cran-colorspace amd64 1.2-4-1 [348 kB] Get:1321 http://mirror.bm.debian.org/debian/ jessie/main r-cran-munsell all 0.4.2-1 [116 kB] Get:1322 http://mirror.bm.debian.org/debian/ jessie/main r-cran-labeling all 0.3-1 [39.9 kB] Get:1323 http://mirror.bm.debian.org/debian/ jessie/main r-cran-scales all 0.2.4-1 [153 kB] Get:1324 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-genomicranges amd64 1.16.4-2 [1120 kB] Get:1325 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-rsamtools amd64 1.16.1-2 [3132 kB] Get:1326 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-bsgenome all 1.32.0-1 [763 kB] Get:1327 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-genomicalignments amd64 1.0.6-1 [1244 kB] Get:1328 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-rtracklayer amd64 1.24.2-1 [1776 kB] Get:1329 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-genomicfeatures all 1.16.3-1 [886 kB] Get:1330 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-variantannotation amd64 1.10.5-1 [1788 kB] Get:1331 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-biovizbase amd64 1.12.3-1 [2524 kB] Get:1332 http://mirror.bm.debian.org/debian/ jessie/main r-cran-reshape2 amd64 1.4-1 [83.5 kB] Get:1333 http://mirror.bm.debian.org/debian/ jessie/main r-cran-gtable all 0.1.2-1.1 [62.3 kB] Get:1334 http://mirror.bm.debian.org/debian/ jessie/main r-cran-mass amd64 7.3-34-1 [1015 kB] Get:1335 http://mirror.bm.debian.org/debian/ jessie/main r-cran-proto amd64 0.3-10-1 [462 kB] Get:1336 http://mirror.bm.debian.org/debian/ jessie/main r-cran-ggplot2 all 1.0.0-1 [2660 kB] Get:1337 http://mirror.bm.debian.org/debian/ jessie/main r-cran-fastcluster amd64 1.1.13-1 [175 kB] Get:1338 http://mirror.bm.debian.org/debian/ jessie/main r-cran-r.methodss3 amd64 1.6.1-1 [54.4 kB] Get:1339 http://mirror.bm.debian.org/debian/ jessie/main r-cran-matrixstats amd64 0.10.3-1 [206 kB] Get:1340 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-gviz all 1.8.4-1 [3111 kB] Get:1341 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-cummerbund all 2.6.1-1 [1851 kB] Get:1342 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-hilbertvis amd64 1.24.0-1 [971 kB] Get:1343 http://mirror.bm.debian.org/debian/ jessie/main r-cran-hwriter all 1.3.2-1 [137 kB] Get:1344 http://mirror.bm.debian.org/debian/ jessie/main r-bioc-shortread amd64 1.22.0-1 [4163 kB] Get:1345 http://mirror.bm.debian.org/debian/ jessie/main r-cran-abind all 1.4-0-2 [36.5 kB] Get:1346 http://mirror.bm.debian.org/debian/ jessie/main r-cran-nlme amd64 3.1.117-1 [1995 kB] Get:1347 http://mirror.bm.debian.org/debian/ jessie/main r-cran-ape amd64 3.1-4-1 [1234 kB] Get:1348 http://mirror.bm.debian.org/debian/ jessie/main r-cran-boot all 1.3-13-1 [571 kB] Get:1349 http://mirror.bm.debian.org/debian/ jessie/main r-cran-class amd64 7.3-11-1 [81.3 kB] Get:1350 http://mirror.bm.debian.org/debian/ jessie/main r-cran-multicore amd64 0.2-1 [19.2 kB] Get:1351 http://mirror.bm.debian.org/debian/ jessie/main r-cran-domc all 1.3.3-1 [157 kB] Get:1352 http://mirror.bm.debian.org/debian/ jessie/main r-cran-doparallel amd64 1.0.8-1 [182 kB] Get:1353 http://mirror.bm.debian.org/debian/ jessie/main r-cran-evaluate all 0.5.5-1 [45.0 kB] Get:1354 http://mirror.bm.debian.org/debian/ jessie/main r-cran-g.data all 2.4-1 [86.1 kB] Get:1355 http://mirror.bm.debian.org/debian/ jessie/main r-cran-genabel.data amd64 1.0.0-1 [2423 kB] Get:1356 http://mirror.bm.debian.org/debian/ jessie/main r-cran-genabel amd64 1.8-0-1 [2894 kB] Get:1357 http://mirror.bm.debian.org/debian/ jessie/main r-cran-getopt amd64 1.20.0-1 [24.3 kB] Get:1358 http://mirror.bm.debian.org/debian/ jessie/main r-cran-kernsmooth amd64 2.23-13-1 [81.4 kB] Get:1359 http://mirror.bm.debian.org/debian/ jessie/main r-cran-maps amd64 2.3-7-1 [1399 kB] Get:1360 http://mirror.bm.debian.org/debian/ jessie/main r-cran-mapproj amd64 1.2-2-1 [50.0 kB] Get:1361 http://mirror.bm.debian.org/debian/ jessie/main r-cran-matrix amd64 1.1-4-1 [2918 kB] Get:1362 http://mirror.bm.debian.org/debian/ jessie/main r-cran-mgcv amd64 1.8-3-1 [1728 kB] Get:1363 http://mirror.bm.debian.org/debian/ jessie/main r-cran-optparse all 1.2.0-1 [54.8 kB] Get:1364 http://mirror.bm.debian.org/debian/ jessie/main r-cran-permute all 0.8-3-1 [510 kB] Get:1365 http://mirror.bm.debian.org/debian/ jessie/main r-cran-qtl amd64 1.33-7-1 [4406 kB] Get:1366 http://mirror.bm.debian.org/debian/ jessie/main r-cran-reshape all 0.8.5-1 [124 kB] Get:1367 http://mirror.bm.debian.org/debian/ jessie/main r-cran-sp amd64 1:1.0-15-1 [1447 kB] Get:1368 http://mirror.bm.debian.org/debian/ jessie/main r-cran-spatial amd64 7.3-8-1 [119 kB] Get:1369 http://mirror.bm.debian.org/debian/ jessie/main tk8.6 amd64 8.6.2-1 [71.1 kB] Get:1370 http://mirror.bm.debian.org/debian/ jessie/main tcl8.6 amd64 8.6.2+dfsg-2 [122 kB] Get:1371 http://mirror.bm.debian.org/debian/ jessie/main tcl amd64 8.6.0+8 [5366 B] Get:1372 http://mirror.bm.debian.org/debian/ jessie/main tk amd64 8.6.0+8 [5388 B] Get:1373 http://mirror.bm.debian.org/debian/ jessie/main tk-table amd64 2.10-2 [116 kB] Get:1374 http://mirror.bm.debian.org/debian/ jessie/main r-cran-tcltk2 all 1.2-10-1 [674 kB] Get:1375 http://mirror.bm.debian.org/debian/ jessie/main r-cran-testthat amd64 0.9.1-1 [243 kB] Get:1376 http://mirror.bm.debian.org/debian/ jessie/main r-cran-vegan amd64 2.0-10-1 [2389 kB] Get:1377 http://mirror.bm.debian.org/debian/ jessie/main r-doc-html all 3.1.1-1+deb8u1 [529 kB] Get:1378 http://mirror.bm.debian.org/debian/ jessie/main r-other-bio3d all 1.1-5-1 [9460 kB] Get:1379 http://mirror.bm.debian.org/debian/ jessie/main r-other-mott-happy.hbrem amd64 2.4-1 [145 kB] Get:1380 http://mirror.bm.debian.org/debian/ jessie/main r-recommended all 3.1.1-1+deb8u1 [2856 B] Get:1381 http://mirror.bm.debian.org/debian/ jessie/main rasmol amd64 2.7.5.2-2 [1688 kB] Get:1382 http://mirror.bm.debian.org/debian/ jessie/main raster3d amd64 3.0-3-1 [162 kB] Get:1383 http://mirror.bm.debian.org/debian/ jessie/main raxml amd64 8.1.1-3 [1079 kB] Get:1384 http://mirror.bm.debian.org/debian/ jessie/main readseq amd64 1-11 [54.5 kB] Get:1385 http://mirror.bm.debian.org/debian/ jessie/main relion-bin amd64 1.3+dfsg-2 [172 kB] Get:1386 http://mirror.bm.debian.org/debian/ jessie/main rename all 0.20-3 [12.4 kB] Get:1387 http://mirror.bm.debian.org/debian/ jessie/main rnahybrid amd64 2.1.1-2 [285 kB] Get:1388 http://mirror.bm.debian.org/debian/ jessie/main rtax all 0.984-2 [25.8 kB] Get:1389 http://mirror.bm.debian.org/debian/ jessie/main rubygems-integration all 1.8 [4514 B] Get:1390 http://mirror.bm.debian.org/debian/ jessie/main libruby2.1 amd64 2.1.5-2+deb8u3 [3290 kB] Get:1391 http://mirror.bm.debian.org/debian/ jessie/main ruby2.1 amd64 2.1.5-2+deb8u3 [276 kB] Get:1392 http://mirror.bm.debian.org/debian/ jessie/main ruby all 1:2.1.5+deb8u2 [9688 B] Get:1393 http://mirror.bm.debian.org/debian/ jessie/main saint amd64 2.4.0+dfsg-1 [84.1 kB] Get:1394 http://mirror.bm.debian.org/debian/ jessie/main samtools amd64 0.1.19-1 [563 kB] Get:1395 http://mirror.bm.debian.org/debian/ jessie/main update-inetd all 4.43 [21.8 kB] Get:1396 http://mirror.bm.debian.org/debian/ jessie/main sane-utils amd64 1.0.24-8+deb8u2 [223 kB] Get:1397 http://mirror.bm.debian.org/debian/ jessie/main seaview amd64 1:4.5.3.1-2 [365 kB] Get:1398 http://mirror.bm.debian.org/debian/ jessie/main seqtk amd64 1.0-1 [19.6 kB] Get:1399 http://mirror.bm.debian.org/debian/ jessie/main sibsim4 amd64 0.20-2 [28.8 kB] Get:1400 http://mirror.bm.debian.org/debian/ jessie/main sim4 amd64 0.0.20121010-1 [49.8 kB] Get:1401 http://mirror.bm.debian.org/debian/ jessie/main smalt amd64 0.7.6-4 [109 kB] Get:1402 http://mirror.bm.debian.org/debian/ jessie/main snp-sites amd64 1.5.0-1 [7038 B] Get:1403 http://mirror.bm.debian.org/debian/ jessie/main soapdenovo amd64 1.05-2 [318 kB] Get:1404 http://mirror.bm.debian.org/debian/ jessie/main soapdenovo2 amd64 240+dfsg-2 [444 kB] Get:1405 http://mirror.bm.debian.org/debian/ jessie/main sphinx-doc all 1.2.3+dfsg-1 [1002 kB] Get:1406 http://mirror.bm.debian.org/debian/ jessie/main squizz amd64 0.99b+dfsg-3 [30.2 kB] Get:1407 http://mirror.bm.debian.org/debian/ jessie/main sra-toolkit-libs0 amd64 2.3.5-2+dfsg-1 [1122 kB] Get:1408 http://mirror.bm.debian.org/debian/ jessie/main sra-toolkit amd64 2.3.5-2+dfsg-1 [905 kB] Get:1409 http://mirror.bm.debian.org/debian/ jessie/main ssl-cert all 1.0.35 [20.9 kB] Get:1410 http://mirror.bm.debian.org/debian/ jessie/main staden-common all 2.0.0+b10-1.1 [1939 kB] Get:1411 http://mirror.bm.debian.org/debian/ jessie/main staden-io-lib-utils amd64 1.13.7-1 [210 kB] Get:1412 http://mirror.bm.debian.org/debian/ jessie/main tklib all 0.6-1+deb8u1 [1023 kB] Get:1413 http://mirror.bm.debian.org/debian/ jessie/main staden amd64 2.0.0+b10-1.1 [1560 kB] Get:1414 http://mirror.bm.debian.org/debian/ jessie/main t-coffee amd64 11.00.8cbe486-1 [921 kB] Get:1415 http://mirror.bm.debian.org/debian/ jessie/main tabix amd64 1.1-1 [190 kB] Get:1416 http://mirror.bm.debian.org/debian/ jessie/main tcllib all 1.16-dfsg-2 [3950 kB] Get:1417 http://mirror.bm.debian.org/debian/ jessie/main tcpd amd64 7.6.q-25 [22.9 kB] Get:1418 http://mirror.bm.debian.org/debian/ jessie/main tex-gyre all 20140520-1 [5051 kB] Get:1419 http://mirror.bm.debian.org/debian/ jessie/main texlive-extra-utils all 2014.20141024-1 [10.6 MB] Get:1420 http://mirror.bm.debian.org/debian/ jessie/main texlive-font-utils all 2014.20141024-1 [1728 kB] Get:1421 http://mirror.bm.debian.org/debian/ jessie/main ttf-adf-universalis all 0.20090423-2 [221 kB] Get:1422 http://mirror.bm.debian.org/debian/ jessie/main ttf-adf-gillius all 0.20090423-2 [400 kB] Get:1423 http://mirror.bm.debian.org/debian/ jessie/main fonts-stix all 1.1.1-1 [588 kB] Get:1424 http://mirror.bm.debian.org/debian/ jessie/main ttf-adf-accanthis all 0.20090423-2 [401 kB] Get:1425 http://mirror.bm.debian.org/debian/ jessie/main texlive-fonts-extra all 2014.20141024-1 [204 MB] Get:1426 http://mirror.bm.debian.org/debian/ jessie/main texlive-fonts-extra-doc all 2014.20141024-1 [60.3 MB] Get:1427 http://mirror.bm.debian.org/debian/ jessie/main texlive-fonts-recommended all 2014.20141024-2+deb8u1 [5654 kB] Get:1428 http://mirror.bm.debian.org/debian/ jessie/main texlive-fonts-recommended-doc all 2014.20141024-2+deb8u1 [2758 kB] Get:1429 http://mirror.bm.debian.org/debian/ jessie/main texlive-latex-base-doc all 2014.20141024-2+deb8u1 [38.3 MB] Get:1430 http://mirror.bm.debian.org/debian/ jessie/main texlive-latex-extra all 2014.20141024-1 [7604 kB] Get:1431 http://mirror.bm.debian.org/debian/ jessie/main texlive-latex-extra-doc all 2014.20141024-1 [327 MB] Get:1432 http://mirror.bm.debian.org/debian/ jessie/main texlive-latex-recommended-doc all 2014.20141024-2+deb8u1 [37.4 MB] Get:1433 http://mirror.bm.debian.org/debian/ jessie/main texlive-math-extra all 2014.20141024-1 [13.3 MB] Get:1434 http://mirror.bm.debian.org/debian/ jessie/main texlive-pictures-doc all 2014.20141024-2+deb8u1 [72.0 MB] Get:1435 http://mirror.bm.debian.org/debian/ jessie/main texlive-pstricks-doc all 2014.20141024-1 [85.6 MB] Get:1436 http://mirror.bm.debian.org/debian/ jessie/main theseus amd64 3.0.0-1 [1146 kB] Get:1437 http://mirror.bm.debian.org/debian/ jessie/main tigr-glimmer amd64 3.02-3 [276 kB] Get:1438 http://mirror.bm.debian.org/debian/ jessie/main tipa all 2:1.3-20 [2972 kB] Get:1439 http://mirror.bm.debian.org/debian/ jessie/main tm-align amd64 20140601+dfsg-1 [49.7 kB] Get:1440 http://mirror.bm.debian.org/debian/ jessie/main transtermhp amd64 2.09-2 [123 kB] Get:1441 http://mirror.bm.debian.org/debian/ jessie/main tree-puzzle amd64 5.2-7+b1 [150 kB] Get:1442 http://mirror.bm.debian.org/debian/ jessie/main treeviewx amd64 0.5.1+20100823-3 [174 kB] Get:1443 http://mirror.bm.debian.org/debian/ jessie/main trimmomatic all 0.32+dfsg-4 [105 kB] Get:1444 http://mirror.bm.debian.org/debian/ jessie/main uc-echo amd64 1.12-7 [75.2 kB] Get:1445 http://mirror.bm.debian.org/debian/ jessie/main ufraw-batch amd64 0.20-2+deb8u1 [352 kB] Get:1446 http://mirror.bm.debian.org/debian/ jessie/main velvet amd64 1.2.10+dfsg1-1 [683 kB] Get:1447 http://mirror.bm.debian.org/debian/ jessie/main velvetoptimiser all 2.2.5-2 [24.9 kB] Get:1448 http://mirror.bm.debian.org/debian/ jessie/main xbitmaps all 1.1.1-2 [32.1 kB] Get:1449 http://mirror.bm.debian.org/debian/ jessie/main xterm amd64 312-2 [605 kB] Get:1450 http://mirror.bm.debian.org/debian/ jessie/main vprerex amd64 6.5.3-1 [25.6 kB] Get:1451 http://mirror.bm.debian.org/debian/ jessie/main wise-data all 2.4.1-17 [108 kB] Get:1452 http://mirror.bm.debian.org/debian/ jessie/main wise amd64 2.4.1-17 [961 kB] Get:1453 http://mirror.bm.debian.org/debian/ jessie/main x11-utils amd64 7.7+2 [191 kB] Get:1454 http://mirror.bm.debian.org/debian/ jessie/main x11-xserver-utils amd64 7.7+3+b1 [158 kB] Get:1455 http://mirror.bm.debian.org/debian/ jessie/main xauth amd64 1:1.0.9-1 [38.2 kB] Get:1456 http://mirror.bm.debian.org/debian/ jessie/main xdg-user-dirs amd64 0.15-2 [52.1 kB] Get:1457 http://mirror.bm.debian.org/debian/ jessie/main xsltproc amd64 1.1.28-2+deb8u3 [118 kB] Get:1458 http://mirror.bm.debian.org/debian/ jessie/main zalign amd64 0.9.1-1+b1 [81.1 kB] Get:1459 http://mirror.bm.debian.org/debian/ jessie/main autodock-vina amd64 1.1.2-3+b1 [192 kB] Get:1460 http://mirror.bm.debian.org/debian/ jessie/main concavity amd64 0.1-2 [315 kB] Get:1461 http://mirror.bm.debian.org/debian/ jessie/main conservation-code all 20110309.0-3 [25.3 kB] Get:1462 http://mirror.bm.debian.org/debian/ jessie/main disulfinder-data all 1.2.11-4 [1131 kB] Get:1463 http://mirror.bm.debian.org/debian/ jessie/main disulfinder amd64 1.2.11-4 [237 kB] Get:1464 http://mirror.bm.debian.org/debian/ jessie/main edtsurf amd64 0.2009-3 [58.6 kB] Get:1465 http://mirror.bm.debian.org/debian/ jessie/main fasttree amd64 2.1.7-2 [128 kB] Get:1466 http://mirror.bm.debian.org/debian/ jessie/main ffindex amd64 0.9.9.3-2 [23.3 kB] Get:1467 http://mirror.bm.debian.org/debian/ jessie/main libffindex0 amd64 0.9.9.3-2 [15.8 kB] Get:1468 http://mirror.bm.debian.org/debian/ jessie/main freecontact amd64 1.0.21-3+b1 [315 kB] Get:1469 http://mirror.bm.debian.org/debian/ jessie/main genometools amd64 1.5.3-2 [1750 kB] Get:1470 http://mirror.bm.debian.org/debian/ jessie/main gromacs amd64 5.0.2-1 [11.5 MB] Get:1471 http://mirror.bm.debian.org/debian/ jessie/main gromacs-data all 5.0.2-1 [785 kB] Get:1472 http://mirror.bm.debian.org/debian/ jessie/main hhsuite-data all 2.0.16-5 [2163 kB] Get:1473 http://mirror.bm.debian.org/debian/ jessie/main hhsuite amd64 2.0.16-5 [740 kB] Get:1474 http://mirror.bm.debian.org/debian/ jessie/main icedtea-netx amd64 1.5.3-1 [25.0 kB] Get:1475 http://mirror.bm.debian.org/debian/ jessie/main libconfig-inifiles-perl all 2.83-3 [54.0 kB] Get:1476 http://mirror.bm.debian.org/debian/ jessie/main libev-perl amd64 4.18-1 [244 kB] Get:1477 http://mirror.bm.debian.org/debian/ jessie/main libhwloc-plugins amd64 1.10.0-3 [15.2 kB] Get:1478 http://mirror.bm.debian.org/debian/ jessie/main libjson0 amd64 0.11-4 [1098 B] Get:1479 http://mirror.bm.debian.org/debian/ jessie/main librg-exception-perl all 1.0.3-1 [3104 B] Get:1480 http://mirror.bm.debian.org/debian/ jessie/main profphd-utils amd64 1.0.10-1 [413 kB] Get:1481 http://mirror.bm.debian.org/debian/ jessie/main librg-utils-perl all 1.0.43-2 [111 kB] Get:1482 http://mirror.bm.debian.org/debian/ jessie/main libset-scalar-perl all 1.29-1 [35.3 kB] Get:1483 http://mirror.bm.debian.org/debian/ jessie/main lynx-cur amd64 2.8.9dev1-2+deb8u1 [1623 kB] Get:1484 http://mirror.bm.debian.org/debian/ jessie/main lynx all 2.8.9dev1-2+deb8u1 [232 kB] Get:1485 http://mirror.bm.debian.org/debian/ jessie/main med-bio all 2.0 [15.4 kB] Get:1486 http://mirror.bm.debian.org/debian/ jessie/main med-tasks all 2.0 [14.7 kB] Get:1487 http://mirror.bm.debian.org/debian/ jessie/main med-config all 2.0 [14.2 kB] Get:1488 http://mirror.bm.debian.org/debian/ jessie/main ncbi-seg amd64 0.0.20000620-2 [78.2 kB] Get:1489 http://mirror.bm.debian.org/debian/ jessie/main neobio all 0.0.20030929-1.1 [443 kB] Get:1490 http://mirror.bm.debian.org/debian/ jessie/main profnet-norsnet amd64 1.0.22-2 [39.1 kB] Get:1491 http://mirror.bm.debian.org/debian/ jessie/main norsnet all 1.0.17-1 [44.4 kB] Get:1492 http://mirror.bm.debian.org/debian/ jessie/main norsp all 1.0.6-1 [283 kB] Get:1493 http://mirror.bm.debian.org/debian/ jessie/main pp-popularity-contest amd64 1.0.6-2+b1 [35.3 kB] Get:1494 http://mirror.bm.debian.org/debian/ jessie/main predictnls all 1.0.20-1 [2146 kB] Get:1495 http://mirror.bm.debian.org/debian/ jessie/main profnet-bval amd64 1.0.22-2 [39.9 kB] Get:1496 http://mirror.bm.debian.org/debian/ jessie/main profbval all 1.0.22-1 [73.1 kB] Get:1497 http://mirror.bm.debian.org/debian/ jessie/main profnet-isis amd64 1.0.22-2 [39.0 kB] Get:1498 http://mirror.bm.debian.org/debian/ jessie/main profisis all 1.0.11-1 [76.2 kB] Get:1499 http://mirror.bm.debian.org/debian/ jessie/main profnet-prof amd64 1.0.22-2 [38.9 kB] Get:1500 http://mirror.bm.debian.org/debian/ jessie/main profphd-net amd64 1.0.22-2 [123 kB] Get:1501 http://mirror.bm.debian.org/debian/ jessie/main profphd all 1.0.40-1 [4538 kB] Get:1502 http://mirror.bm.debian.org/debian/ jessie/main proftmb amd64 1.1.12-2 [396 kB] Get:1503 http://mirror.bm.debian.org/debian/ jessie/main predictprotein all 1.1.06-1 [58.8 kB] Get:1504 http://mirror.bm.debian.org/debian/ jessie/main profnet-chop amd64 1.0.22-2 [39.0 kB] Get:1505 http://mirror.bm.debian.org/debian/ jessie/main profnet-con amd64 1.0.22-2 [39.1 kB] Get:1506 http://mirror.bm.debian.org/debian/ jessie/main profnet-md amd64 1.0.22-2 [39.2 kB] Get:1507 http://mirror.bm.debian.org/debian/ jessie/main profnet-snapfun amd64 1.0.22-2 [39.1 kB] Get:1508 http://mirror.bm.debian.org/debian/ jessie/main pvm amd64 3.4.5-12.6 [156 kB] Get:1509 http://mirror.bm.debian.org/debian/ jessie/main qiime amd64 1.8.0+dfsg-4 [926 kB] Get:1510 http://mirror.bm.debian.org/debian/ jessie/main pynast all 1.2.2-1 [81.1 kB] Get:1511 http://mirror.bm.debian.org/debian/ jessie/main python-gdata all 2.0.18+dfsg1-2 [358 kB] Get:1512 http://mirror.bm.debian.org/debian/ jessie/main python-gobject all 3.14.0-1 [307 kB] Get:1513 http://mirror.bm.debian.org/debian/ jessie/main python-mpi4py amd64 1.3.1+hg20131106-2 [318 kB] Get:1514 http://mirror.bm.debian.org/debian/ jessie/main ray amd64 2.3.1-1 [601 kB] Get:1515 http://mirror.bm.debian.org/debian/ jessie/main science-biology all 1.4 [11.5 kB] Get:1516 http://mirror.bm.debian.org/debian/ jessie/main science-tasks all 1.4 [18.4 kB] Get:1517 http://mirror.bm.debian.org/debian/ jessie/main science-config all 1.4 [13.9 kB] Get:1518 http://mirror.bm.debian.org/debian/ jessie/main snap amd64 2013-11-29-1 [372 kB] Get:1519 http://mirror.bm.debian.org/debian/ jessie/main ttf-freefont all 20120503-4 [120 kB] Get:1520 http://mirror.bm.debian.org/debian/ jessie/main ttf-liberation all 1.07.4-1 [9540 B] Get:1521 http://mirror.bm.debian.org/debian/ jessie/main vcftools amd64 0.1.12+dfsg-1 [380 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2122 MB in 1min 43s (20.6 MB/s) (Reading database ... 63091 files and directories currently installed.) 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Unpacking replacement libgomp1:amd64 ... dpkg: gcc-4.7-base:amd64: dependency problems, but removing anyway as you requested: libstdc++6:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgfortran3:amd64 depends on gcc-4.7-base (= 4.7.2-5). libobjc4:amd64 depends on gcc-4.7-base (= 4.7.2-5). gfortran-4.7 depends on gcc-4.7-base (= 4.7.2-5). libgcc1:amd64 depends on gcc-4.7-base (= 4.7.2-5). gcc-4.7 depends on gcc-4.7-base (= 4.7.2-5). libquadmath0:amd64 depends on gcc-4.7-base (= 4.7.2-5). g++-4.7 depends on gcc-4.7-base (= 4.7.2-5). cpp-4.7 depends on gcc-4.7-base (= 4.7.2-5). libstdc++6-4.7-dev depends on gcc-4.7-base (= 4.7.2-5). (Reading database ... 63154 files and directories currently installed.) Removing gcc-4.7-base:amd64 ... Selecting previously unselected package gcc-4.9-base:amd64. (Reading database ... 63149 files and directories currently installed.) Unpacking gcc-4.9-base:amd64 (from .../gcc-4.9-base_4.9.2-10_amd64.deb) ... Setting up gcc-4.9-base:amd64 (4.9.2-10) ... 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Initializing machine ID from D-Bus machine ID. Adding group `systemd-journal' (GID 158) ... Done. Created symlink from /etc/systemd/system/getty.target.wants/getty@tty1.service to /lib/systemd/system/getty@.service. Created symlink from /etc/systemd/system/multi-user.target.wants/remote-fs.target to /lib/systemd/system/remote-fs.target. Created symlink from /etc/systemd/system/reboot.target.wants/hwclock-save.service to /lib/systemd/system/hwclock-save.service. Created symlink from /etc/systemd/system/halt.target.wants/hwclock-save.service to /lib/systemd/system/hwclock-save.service. Created symlink from /etc/systemd/system/poweroff.target.wants/hwclock-save.service to /lib/systemd/system/hwclock-save.service. Selecting previously unselected package systemd-sysv. (Reading database ... 64870 files and directories currently installed.) Preparing to unpack .../systemd-sysv_215-17+deb8u7_amd64.deb ... Unpacking systemd-sysv (215-17+deb8u7) ... 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Changing shell of daemon from /bin/sh to /usr/sbin/nologin Changing shell of bin from /bin/sh to /usr/sbin/nologin Changing shell of sys from /bin/sh to /usr/sbin/nologin Changing shell of games from /bin/sh to /usr/sbin/nologin Changing shell of man from /bin/sh to /usr/sbin/nologin Changing shell of lp from /bin/sh to /usr/sbin/nologin Changing shell of mail from /bin/sh to /usr/sbin/nologin Changing shell of news from /bin/sh to /usr/sbin/nologin Changing shell of uucp from /bin/sh to /usr/sbin/nologin Changing shell of proxy from /bin/sh to /usr/sbin/nologin Changing shell of www-data from /bin/sh to /usr/sbin/nologin Changing shell of backup from /bin/sh to /usr/sbin/nologin Changing shell of list from /bin/sh to /usr/sbin/nologin Changing shell of irc from /bin/sh to /usr/sbin/nologin Changing shell of gnats from /bin/sh to /usr/sbin/nologin Changing shell of nobody from /bin/sh to /usr/sbin/nologin 16 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 64910 files and directories currently installed.) 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Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2+b3) ... Selecting previously unselected package libmagickcore-6.q16-2-extra:amd64. Preparing to unpack .../libmagickcore-6.q16-2-extra_8%3a6.8.9.9-5+deb8u11_amd64.deb ... Unpacking libmagickcore-6.q16-2-extra:amd64 (8:6.8.9.9-5+deb8u11) ... Selecting previously unselected package libsys-hostname-long-perl. Preparing to unpack .../libsys-hostname-long-perl_1.4-3_all.deb ... Unpacking libsys-hostname-long-perl (1.4-3) ... Selecting previously unselected package libmail-sendmail-perl. Preparing to unpack .../libmail-sendmail-perl_0.79.16-1_all.deb ... Unpacking libmail-sendmail-perl (0.79.16-1) ... Preparing to unpack .../libmath-spline-perl_0.02-1_all.deb ... Unpacking libmath-spline-perl (0.02-1) over (0.01-4) ... Preparing to unpack .../libmldbm-perl_2.05-1_all.deb ... Unpacking libmldbm-perl (2.05-1) over (2.04-1) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../libmodule-build-perl_0.421000-2+deb8u1_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.421000-2+deb8u1) ... Selecting previously unselected package libmodule-pluggable-perl. Preparing to unpack .../libmodule-pluggable-perl_5.1-1_all.deb ... Unpacking libmodule-pluggable-perl (5.1-1) ... Selecting previously unselected package libmodule-signature-perl. Preparing to unpack .../libmodule-signature-perl_0.73-1+deb8u2_all.deb ... Unpacking libmodule-signature-perl (0.73-1+deb8u2) ... Preparing to unpack .../libmopac7-1gf_1.15-6_amd64.deb ... Unpacking libmopac7-1gf (1.15-6) over (1.15-5) ... Selecting previously unselected package libmultidimensional-perl. Preparing to unpack .../libmultidimensional-perl_0.010-1+b2_amd64.deb ... 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Selecting previously unselected package predictprotein. Preparing to unpack .../predictprotein_1.1.06-1_all.deb ... Unpacking predictprotein (1.1.06-1) ... Preparing to unpack .../profnet-chop_1.0.22-2_amd64.deb ... Unpacking profnet-chop (1.0.22-2) over (1.0.21-1+wheezy1) ... Preparing to unpack .../profnet-con_1.0.22-2_amd64.deb ... Unpacking profnet-con (1.0.22-2) over (1.0.21-1+wheezy1) ... Preparing to unpack .../profnet-md_1.0.22-2_amd64.deb ... Unpacking profnet-md (1.0.22-2) over (1.0.21-1+wheezy1) ... Preparing to unpack .../profnet-snapfun_1.0.22-2_amd64.deb ... Unpacking profnet-snapfun (1.0.22-2) over (1.0.21-1+wheezy1) ... Selecting previously unselected package pvm. Preparing to unpack .../pvm_3.4.5-12.6_amd64.deb ... Unpacking pvm (3.4.5-12.6) ... Preparing to unpack .../qiime_1.8.0+dfsg-4_amd64.deb ... Unpacking qiime (1.8.0+dfsg-4) over (1.4.0-2) ... Preparing to unpack .../pynast_1.2.2-1_all.deb ... Unpacking pynast (1.2.2-1) over (1.1-3) ... 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Preparing to unpack .../ttf-freefont_20120503-4_all.deb ... Unpacking ttf-freefont (20120503-4) over (20120503-1) ... Preparing to unpack .../ttf-liberation_1.07.4-1_all.deb ... Unpacking ttf-liberation (1.07.4-1) over (1.07.2-6) ... Preparing to unpack .../vcftools_0.1.12+dfsg-1_amd64.deb ... Unpacking vcftools (0.1.12+dfsg-1) over (0.1.9-1) ... Processing triggers for systemd (215-17+deb8u7) ... Setting up libc-dev-bin (2.19-18+deb8u10) ... Setting up linux-libc-dev:amd64 (3.16.51-2) ... Setting up libc6-dev:amd64 (2.19-18+deb8u10) ... Setting up libitm1:amd64 (4.9.2-10) ... Setting up libgomp1:amd64 (4.9.2-10) ... Setting up libquadmath0:amd64 (4.9.2-10) ... Setting up libgfortran3:amd64 (4.9.2-10) ... Setting up libobjc4:amd64 (4.9.2-10) ... Setting up libisl10:amd64 (0.12.2-2) ... Setting up libcloog-isl4:amd64 (0.18.2-1+b2) ... Setting up libmpc3:amd64 (1.0.2-1) ... Setting up cpp-4.9 (4.9.2-10) ... Setting up cpp (4:4.9.2-2) ... Setting up libtinfo-dev:amd64 (5.9+20140913-1+deb8u2) ... Setting up libncurses5-dev:amd64 (5.9+20140913-1+deb8u2) ... Setting up binutils (2.25-5+deb8u1) ... Setting up libatomic1:amd64 (4.9.2-10) ... Setting up libasan1:amd64 (4.9.2-10) ... Setting up liblsan0:amd64 (4.9.2-10) ... Setting up libtsan0:amd64 (4.9.2-10) ... Setting up libubsan0:amd64 (4.9.2-10) ... Setting up libcilkrts5:amd64 (4.9.2-10) ... Setting up libgcc-4.9-dev:amd64 (4.9.2-10) ... Setting up gcc-4.9 (4.9.2-10) ... Setting up gcc (4:4.9.2-2) ... Setting up libgfortran-4.9-dev:amd64 (4.9.2-10) ... Setting up gfortran-4.9 (4.9.2-10) ... Setting up gfortran (4:4.9.2-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libstdc++-4.9-dev:amd64 (4.9.2-10) ... Setting up g++-4.9 (4.9.2-10) ... Setting up g++ (4:4.9.2-2) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libpng12-dev:amd64 (1.2.50-2+deb8u3) ... Setting up libpcrecpp0:amd64 (2:8.35-3.3+deb8u4) ... Setting up libpcre3-dev:amd64 (2:8.35-3.3+deb8u4) ... Setting up ttf-dejavu-core (2.34-1) ... Setting up fontconfig (2.11.0-6.3+deb8u1) ... Regenerating fonts cache... done. Setting up libx11-doc (2:1.6.2-3+deb8u1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up x11proto-core-dev (7.0.26-1) ... Setting up libxau-dev:amd64 (1:1.0.8-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.1-1+b1) ... Setting up x11proto-input-dev (2.3.1-1) ... Setting up xtrans-dev (1.3.4-1) ... Setting up libpthread-stubs0-dev:amd64 (0.3-4) ... Setting up libxcb1-dev:amd64 (1.10-3+b1) ... Setting up libx11-dev:amd64 (2:1.6.2-3+deb8u1) ... Setting up proj-data (4.8.0-5) ... Setting up libproj0 (4.8.0-5) ... Setting up libterm-readkey-perl (2.32-1+b1) ... Setting up libgsl0ldbl (1.16+dfsg-2) ... Setting up libhdf4-0-alt (4.2.10-3) ... Setting up pdl (1:2.007-4) ... Setting up mime-support (3.58) ... Installing new version of config file /etc/mime.types ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u7) ... Checking for services that may need to be restarted...done. Checking for services that may need to be restarted...done. Setting up libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Setting up libpython2.7:amd64 (2.7.9-2+deb8u1) ... Setting up python2.7 (2.7.9-2+deb8u1) ... Setting up libbz2-dev:amd64 (1.0.6-7+b3) ... Setting up bzip2 (1.0.6-7+b3) ... Setting up libreadline6-dev:amd64 (6.3-8+b3) ... Setting up libreadline-dev:amd64 (6.3-8+b3) ... Setting up sqlite3 (3.8.7.1-1+deb8u2) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libperl4-corelibs-perl (0.003-1) ... Setting up ssake (3.8.2-1) ... Setting up perl-doc (5.20.2-3+deb8u9) ... Setting up libcommon-sense-perl (3.73-2+b3) ... Setting up netbase (5.3) ... Installing new version of config file /etc/protocols ... Installing new version of config file /etc/services ... Setting up libsocket-perl (2.016-1) ... Setting up libio-socket-ip-perl (0.32-1) ... Setting up libapr1:amd64 (1.5.1-3) ... Setting up libaprutil1:amd64 (1.5.4-1) ... Setting up libnettle4:amd64 (2.7.1-5+deb8u2) ... Setting up libhogweed2:amd64 (2.7.1-5+deb8u2) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u3) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u3) ... Setting up libaprutil1-ldap:amd64 (1.5.4-1) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Setting up apache2-utils (2.4.10-10+deb8u11) ... Setting up liblua5.1-0:amd64 (5.1.5-7.1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u5) ... Setting up apache2-bin (2.4.10-10+deb8u11) ... Setting up libperl5.20 (5.20.2-3+deb8u9) ... Setting up libdevel-symdump-perl (2.12-1) ... Setting up liburi-perl (1.64-1) ... Setting up openssl (1.0.1t-1+deb8u7) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 39 added, 36 removed; done. Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libnet-http-perl (6.07-1) ... Setting up apache2-data (2.4.10-10+deb8u11) ... Setting up apache2 (2.4.10-10+deb8u11) ... Installing new version of config file /etc/apache2/apache2.conf ... Installing new version of config file /etc/apache2/envvars ... Installing new version of config file /etc/apache2/mods-available/actions.conf ... Installing new version of config file /etc/apache2/mods-available/alias.conf ... Installing new version of config file /etc/apache2/mods-available/asis.load ... Installing new version of config file /etc/apache2/mods-available/auth_basic.load ... Installing new version of config file /etc/apache2/mods-available/auth_digest.load ... Installing new version of config file /etc/apache2/mods-available/authz_dbm.load ... Installing new version of config file /etc/apache2/mods-available/authz_groupfile.load ... Installing new version of config file /etc/apache2/mods-available/authz_host.load ... Installing new version of config file /etc/apache2/mods-available/authz_user.load ... Installing new version of config file /etc/apache2/mods-available/autoindex.conf ... Installing new version of config file /etc/apache2/mods-available/cgid.conf ... Installing new version of config file /etc/apache2/mods-available/dav_fs.conf ... Installing new version of config file /etc/apache2/mods-available/deflate.conf ... Installing new version of config file /etc/apache2/mods-available/deflate.load ... Installing new version of config file /etc/apache2/mods-available/dir.conf ... Installing new version of config file /etc/apache2/mods-available/include.load ... Installing new version of config file /etc/apache2/mods-available/info.conf ... Installing new version of config file /etc/apache2/mods-available/ldap.conf ... Installing new version of config file /etc/apache2/mods-available/mime.conf ... Installing new version of config file /etc/apache2/mods-available/mime_magic.conf ... Installing new version of config file /etc/apache2/mods-available/negotiation.conf ... Installing new version of config file /etc/apache2/mods-available/proxy.conf ... Installing new version of config file /etc/apache2/mods-available/proxy_balancer.conf ... Installing new version of config file /etc/apache2/mods-available/proxy_balancer.load ... Installing new version of config file /etc/apache2/mods-available/proxy_ftp.conf ... Installing new version of config file /etc/apache2/mods-available/reqtimeout.conf ... Installing new version of config file /etc/apache2/mods-available/setenvif.conf ... Installing new version of config file /etc/apache2/mods-available/ssl.conf ... Installing new version of config file /etc/apache2/mods-available/ssl.load ... Installing new version of config file /etc/apache2/mods-available/status.conf ... Installing new version of config file /etc/apache2/mods-available/userdir.conf ... Installing new version of config file /etc/apache2/ports.conf ... Installing new version of config file /etc/cron.daily/apache2 ... Installing new version of config file /etc/default/apache2 ... Installing new version of config file /etc/init.d/apache2 ... Installing new version of config file /etc/logrotate.d/apache2 ... Removing obsolete conffile /etc/apache2/mods-available/authz_default.load ... Removing obsolete conffile /etc/apache2/mods-available/authn_default.load ... Removing obsolete conffile /etc/apache2/mods-available/mem_cache.load ... Removing obsolete conffile /etc/apache2/mods-available/mem_cache.conf ... Removing obsolete conffile /etc/apache2/mods-available/authn_alias.load ... Removing obsolete conffile /etc/apache2/mods-available/cern_meta.load ... Removing obsolete conffile /etc/apache2/mods-available/disk_cache.load ... Removing obsolete conffile /etc/apache2/mods-available/disk_cache.conf ... Removing obsolete conffile /etc/apache2/mods-available/imagemap.load ... Removing obsolete directory /etc/apache2/conf.d Enabling module mpm_worker. Enabling module authn_core. disable obsolete module authz_default Enabling module authz_core. Enabling module filter. Enabling module access_compat. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. invoke-rc.d: policy-rc.d denied execution of restart. Setting up apache2.2-common (2.4.10-10+deb8u11) ... Setting up apache2-mpm-worker (2.4.10-10+deb8u11) ... Setting up apache2.2-bin (2.4.10-10+deb8u11) ... Setting up libtext-charwidth-perl (0.04-7+b3) ... Setting up libdbus-1-3:amd64 (1.8.22-0+deb8u1) ... Setting up libpackage-stash-xs-perl (0.28-2+b1) ... Setting up liblist-moreutils-perl (0.33-2+b1) ... Setting up libclone-perl (0.37-1+b1) ... Setting up libmath-random-mt-perl (1.16-1+b2) ... Setting up libbit-vector-perl (7.3-1+b2) ... Setting up libdate-calc-perl (6.3-2) ... Setting up libdate-calc-xs-perl (6.3-2) ... Setting up libparams-util-perl (1.07-2+b1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libdata-optlist-perl (0.109-1) ... Setting up libparams-classify-perl (0.013-4+b2) ... Setting up libmodule-runtime-perl (0.014-1) ... Setting up libtry-tiny-perl (0.22-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libsub-exporter-progressive-perl (0.001011-1) ... Setting up libvariable-magic-perl (0.55-1) ... Setting up libb-hooks-endofscope-perl (0.13-1) ... Setting up libpackage-stash-perl (0.37-1) ... Setting up libsub-identify-perl (0.08-1) ... Setting up libsub-name-perl (0.12-1) ... Setting up libnamespace-clean-perl (0.25-1) ... Setting up libclass-load-perl (0.22-1) ... Setting up libclass-load-xs-perl (0.08-1+b1) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... Setting up libatlas3-base (3.10.2-7) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libtamuanova-0.2 (0.2-3) ... Setting up libmath-tamuanova-perl (1.0.2-2+b2) ... Setting up libio-pty-perl (1:1.08-1+b4) ... Setting up libipc-sharelite-perl (0.17-3+b2) ... Setting up libdbi-perl (1.631-3+b1) ... Setting up libdbd-sqlite3-perl (1.44-1) ... Setting up libbsd-resource-perl (1.2907-1+b2) ... Setting up liblocale-gettext-perl (1.05-8+b1) ... Setting up libio-string-perl (1.08-3) ... Setting up libdata-stag-perl (0.13-1) ... Setting up libbio-perl-perl (1.6.924-1) ... Setting up bioperl (1.6.924-1) ... Setting up libbio-graphics-perl (2.39-2) ... Setting up libanyevent-perl (7.070-3) ... Setting up libanyevent-cachedns-perl (0.08-1) ... Setting up libanyevent-http-perl (2.21-1) ... Setting up libstring-approx-perl (3.27-1+b2) ... Setting up libjson-perl (2.61-1) ... Setting up libcgi-session-perl (4.48-1+deb8u1) ... Setting up libstatistics-descriptive-perl (3.0607-1) ... Setting up libjs-prototype (1.7.1-3) ... Setting up libterm-readline-gnu-perl (1.24-2+b1) ... Setting up libkeyutils1:amd64 (1.5.9-5+b1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Setting up libidn11:amd64 (1.29-1+deb8u2) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Setting up libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Setting up libcurl3-gnutls:amd64 (7.38.0-4+deb8u8) ... Setting up libstaden-read1 (1.13.7-1) ... Setting up libbio-scf-perl (1.03-2+b1) ... Setting up libjson-xs-perl (2.340-1+b2) ... Setting up libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxslt-perl (1.92-1+b1) ... Setting up libalgorithm-diff-perl (1.19.02-3) ... Setting up libalgorithm-diff-xs-perl (0.04-3+b1) ... Setting up libfile-fcntllock-perl (0.22-1+b1) ... Setting up libxrender1:amd64 (1:0.9.8-1+b1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up perl-tk (1:804.032-3+b3) ... Setting up altree (1.3.1-2+b1) ... Setting up libmysqlclient18:amd64 (5.5.58-0+deb8u1) ... Setting up libdbd-mysql-perl (4.028-2+deb8u2) ... Setting up libyaml-syck-perl (1.27-2+b2) ... Setting up libtext-iconv-perl (1.7-5+b2) ... Setting up libfann2:amd64 (2.1.0~beta+dfsg-1) ... Setting up libai-fann-perl (0.10-2+b1) ... Setting up libcrypt-ssleay-perl (0.58-1+b2) ... Setting up libpq5:amd64 (9.4.15-0+deb8u1) ... Setting up libdbd-pg-perl (3.4.2-1) ... Setting up libclass-c3-xs-perl (0.13-2+b1) ... Setting up libconvert-binary-c-perl (0.76-3+b2) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b1) ... Setting up libdrm2:amd64 (2.4.58-2) ... Setting up libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Setting up libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxcb-dri2-0:amd64 (1.10-3+b1) ... Setting up libxcb-dri3-0:amd64 (1.10-3+b1) ... Setting up libxcb-glx0:amd64 (1.10-3+b1) ... Setting up libxcb-present0:amd64 (1.10-3+b1) ... Setting up libxcb-sync1:amd64 (1.10-3+b1) ... Setting up libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxshmfence1:amd64 (1.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Setting up libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Setting up libxi6:amd64 (2:1.7.4-1+deb8u1) ... Setting up freeglut3:amd64 (2.8.1-2) ... Setting up libglu1-mesa:amd64 (9.0.0-2) ... Setting up libopengl-perl (0.6703+dfsg-1+b1) ... Setting up libperlio-gzip-perl (0.18-3+b1) ... Setting up libunicode-map-perl (0.112-11+b1) ... Setting up liberror-perl (0.17-1.1) ... Setting up libcache-cache-perl (1.07-2) ... Setting up libace-perl (1.92-3+b1) ... Setting up libfcgi-perl (0.77-1+deb8u1) ... Setting up libdevel-stacktrace-perl (1.3400-1) ... Setting up libdist-checkconflicts-perl (0.11-1) ... Setting up libmodule-runtime-conflicts-perl (0.001-1) ... Setting up libdevel-globaldestruction-perl (0.13-1) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up libeval-closure-perl (0.11-1) ... Setting up libalgorithm-c3-perl (0.09-1) ... Setting up libclass-c3-perl (0.26-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up libmoose-perl (2.1213-1) ... Setting up libgdbm3:amd64 (1.8.3-13.1) ... Setting up iproute2 (3.16.0-2) ... Installing new version of config file /etc/iproute2/ematch_map ... Setting up iproute (1:3.16.0-2) ... Setting up ifupdown (0.7.53.1) ... Installing new version of config file /etc/init.d/networking ... Installing new version of config file /etc/init/network-interface-container.conf ... Installing new version of config file /etc/init/network-interface-security.conf ... Installing new version of config file /etc/init/network-interface.conf ... Installing new version of config file /etc/init/networking.conf ... Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libclass-inspector-perl (1.28-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libconvert-binhex-perl (1.123-2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libnet-smtp-ssl-perl (1.01-3) ... Setting up libmailtools-perl (2.13-1) ... Setting up libmime-tools-perl (5.505-1) ... Setting up libblas-dev (1.2.20110419-10) ... update-alternatives: updating alternative /usr/lib/libblas/libblas.so because link group libblas.so has changed slave links Setting up libgetopt-euclid-perl (0.4.5-1) ... Setting up grinder (0.5.3-3) ... Setting up libpciaccess0:amd64 (0.13.2-3+b1) ... Setting up libdrm-intel1:amd64 (2.4.58-2) ... Setting up libdrm-nouveau2:amd64 (2.4.58-2) ... Setting up libdrm-radeon1:amd64 (2.4.58-2) ... Setting up libelf1:amd64 (0.159-4.2) ... Setting up libbsd0:amd64 (0.7.0-2) ... Setting up libedit2:amd64 (3.1-20140620-2) ... Setting up libllvm3.5:amd64 (1:3.5-10) ... Setting up libgl1-mesa-dri:amd64 (10.3.2-1+deb8u1) ... Installing new version of config file /etc/drirc ... Setting up ucf (3.0030) ... Setting up fonts-liberation (1.07.4-1) ... Setting up gnustep-common (2.6.6-3) ... Setting up gnustep-base-common (1.24.7-1) ... Setting up libavahi-common-data:amd64 (0.6.31-5) ... Setting up libavahi-common3:amd64 (0.6.31-5) ... Setting up libavahi-client3:amd64 (0.6.31-5) ... Setting up libicu52:amd64 (52.1-8+deb8u6) ... Setting up libgnustep-base1.24 (1.24.7-1) ... Setting up gnustep-base-runtime (1.24.7-1) ... Installing new version of config file /etc/default/gdomap ... Installing new version of config file /etc/init.d/gdomap ... invoke-rc.d: policy-rc.d denied execution of start. Setting up mknfonts.tool (0.5-11+b4) ... Setting up fonts-freefont-ttf (20120503-4) ... Setting up gnustep-gui-common (0.24.0-3) ... Setting up libao-common (1.1.0-3) ... Setting up libao4 (1.1.0-3) ... Setting up emacsen-common (2.0.8) ... Setting up dictionaries-common (1.23.17) ... Installing new version of config file /etc/emacs/site-start.d/50dictionaries-common.el ... Setting up libaspell15:amd64 (0.60.7~20110707-1.3) ... Setting up aspell (0.60.7~20110707-1.3) ... Setting up libcups2:amd64 (1.7.5-11+deb8u2) ... Setting up libasound2-data (1.0.28-1) ... Setting up libasound2:amd64 (1.0.28-1) ... Setting up libflite1:amd64 (1.4-release-12) ... Setting up libgif4:amd64 (4.1.6-11+deb8u1) ... Setting up libfftw3-double3:amd64 (3.3.4-2) ... Setting up libfftw3-long3:amd64 (3.3.4-2) ... Setting up libfftw3-single3:amd64 (3.3.4-2) ... Setting up libfftw3-3:amd64 (3.3.4-2) ... Setting up liblcms2-2:amd64 (2.6-3+deb8u1) ... Setting up libglib2.0-0:amd64 (2.42.1-1+b1) ... Setting up libgirepository-1.0-1:amd64 (1.42.0-2.2) ... Setting up gir1.2-glib-2.0:amd64 (1.42.0-2.2) ... Setting up python-gi (3.14.0-1) ... Setting up liblqr-1-0:amd64 (0.4.2-2) ... Setting up libltdl7:amd64 (2.4.2-1.11+b1) ... Setting up imagemagick-common (8:6.8.9.9-5+deb8u11) ... Setting up libmagickcore-6.q16-2:amd64 (8:6.8.9.9-5+deb8u11) ... Setting up libgnustep-gui0.24 (0.24.0-3) ... Setting up libogg0:amd64 (1.3.2-1) ... Setting up libflac8:amd64 (1.3.0-3) ... Setting up libvorbis0a:amd64 (1.3.4-2) ... Setting up libvorbisenc2:amd64 (1.3.4-2) ... Setting up libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... Setting up gnustep-gui-runtime (0.24.0-3) ... Setting up gnustep-back-common (0.24.0-4) ... Generating GNUstep nfont descriptions... done. Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxcb-render0:amd64 (1.10-3+b1) ... Setting up libxcb-shm0:amd64 (1.10-3+b1) ... Setting up libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Setting up libxcursor1:amd64 (1:1.1.14-1+b1) ... Setting up libice6:amd64 (2:1.0.9-1+b1) ... Setting up libsm6:amd64 (2:1.2.2-1+b1) ... Setting up libxt6:amd64 (1:1.1.4-1+b1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up gnustep-back0.24-cairo (0.24.0-4) ... update-alternatives: using /usr/lib/GNUstep/Bundles/libgnustep-cairo-024.bundle to provide /usr/lib/GNUstep/Bundles/libgnustep-back-024.bundle (gnustep-back-024) in auto mode Setting up gnustep-back0.24 (0.24.0-4) ... Setting up adun.app (0.81-6+b1) ... Setting up libice-dev:amd64 (2:1.0.9-1+b1) ... Setting up libsm-dev:amd64 (2:1.2.2-1+b1) ... Setting up libxt-dev:amd64 (1:1.1.4-1+b1) ... Setting up libcdt5 (2.38.0-7) ... Setting up libcgraph6 (2.38.0-7) ... Setting up libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Setting up libharfbuzz0b:amd64 (0.9.35-2) ... Setting up libthai-data (0.1.21-1) ... Setting up libdatrie1:amd64 (0.2.8-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up libpango-1.0-0:amd64 (1.36.8-3) ... Setting up libpangoft2-1.0-0:amd64 (1.36.8-3) ... Setting up libpangocairo-1.0-0:amd64 (1.36.8-3) ... Setting up libpangox-1.0-0:amd64 (0.0.2-5) ... Setting up libpangoxft-1.0-0:amd64 (1.36.8-3) ... Setting up libpango1.0-0:amd64 (1.36.8-3) ... Setting up libpathplan4 (2.38.0-7) ... Setting up libxdot4 (2.38.0-7) ... Setting up libgvc6 (2.38.0-7) ... Setting up libgvpr2 (2.38.0-7) ... Setting up libxaw7:amd64 (2:1.0.12-2+b1) ... Setting up graphviz (2.38.0-7) ... Setting up libnuma1:amd64 (2.0.10-1) ... Setting up libhwloc5:amd64 (1.10.0-3) ... Setting up libint1 (1.1.5-1) ... Setting up libcr0 (0.8.5-2.2) ... Setting up libibverbs1 (1.1.8-1.1) ... Setting up libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Setting up openmpi-common (1.6.5-9.1+deb8u1) ... Setting up openmpi-bin (1.6.5-9.1+deb8u1) ... Installing new version of config file /etc/openmpi/openmpi-default-hostfile ... Setting up blcr-util (0.8.5-2.2) ... Setting up openmpi-checkpoint (1.6.5-9.1+deb8u1) ... Setting up libsc-data (2.3.1-16) ... Setting up mpi-default-bin (1.0.2+nmu2) ... Setting up liblapack3 (3.5.0-4) ... Setting up libsc7 (2.3.1-16) ... Setting up mpqc (2.3.1-16) ... Setting up fftw2 (2.1.5-1+b1) ... Setting up mafft (7.205-1) ... Setting up ampliconnoise (1.29-2) ... Setting up libmaloc1 (0.2-3) ... Setting up apbs (1.4-1) ... Setting up liblapack-dev (3.5.0-4) ... update-alternatives: updating alternative /usr/lib/lapack/liblapack.so because link group liblapack.so has changed slave links Setting up ncbi-data (6.1.20120620-8) ... Setting up libncbi6:amd64 (6.1.20120620-8) ... Setting up libmotif-common (2.3.4-6+deb8u1) ... Setting up libxm4:amd64 (2.3.4-6+deb8u1) ... Setting up libvibrant6b:amd64 (6.1.20120620-8) ... Setting up ncbi-tools-x11 (6.1.20120620-8) ... update-alternatives: using /usr/bin/Cn3D-3.0 to provide /usr/bin/Cn3D (Cn3D) in auto mode Setting up njplot (2.4-2+b1) ... Setting up tzdata-java (2017c-0+deb8u1) ... Setting up libboost-iostreams1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libjson-c2:amd64 (0.11-4) ... Setting up libpipeline1:amd64 (1.4.0-1) ... Setting up libpopt0:amd64 (1.16-10) ... Setting up groff-base (1.22.2-8) ... Installing new version of config file /etc/groff/man.local ... Installing new version of config file /etc/groff/mdoc.local ... Setting up groff (1.22.2-8) ... Setting up bsdmainutils (9.0.6) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-5) ... Building database of manual pages ... Setting up libasprintf0c2:amd64 (0.19.3-2) ... Setting up libgpm2:amd64 (1.20.4-6.1+b2) ... Setting up libmagic1:amd64 (1:5.22+15-2+deb8u3) ... Setting up file (1:5.22+15-2+deb8u3) ... Setting up libwrap0:amd64 (7.6.q-25) ... Setting up fonts-circos-symbols (0.66-1) ... Setting up fonts-cmu (0.7.0-3) ... Setting up libregexp-common-perl (2013031301-1) ... Setting up libcarp-always-perl (0.12-1) ... Setting up libconfig-general-perl (2.56-1) ... Setting up libdata-dumper-simple-perl (0.11-4) ... Setting up libgetopt-simple-perl (1.52-4) ... Setting up libmath-bezier-perl (0.01-1) ... Setting up libmath-round-perl (0.06-4) ... Setting up libparams-validate-perl (1.13-1+b1) ... Setting up libreadonly-perl (2.000-1) ... Setting up libset-intspan-perl (1.19-1) ... Setting up liblist-allutils-perl (0.09-1) ... Setting up libmath-vec-perl (1.01-2) ... Setting up libspiffy-perl (0.41-1) ... Setting up libio-all-perl (0.79-1) ... Setting up libmath-vecstat-perl (0.08-1) ... Setting up libgraphics-colornames-perl (2.11-6) ... Setting up libgraphics-colorobject-perl (0.5.0-6) ... Setting up libtext-format-perl (0.59-1) ... Setting up libfont-ttf-perl (1.04-1) ... Setting up circos (0.66-1) ... Setting up circos-tools (0.18-1) ... Setting up fonts-droid (1:4.4.4r2-6) ... Removing obsolete conffile /etc/fonts/conf.avail/65-droid-sans-fonts.conf ... Setting up fonts-lato (2.0-1) ... Setting up libaio1:amd64 (0.3.110-1) ... Setting up libamd2.3.1:amd64 (1:4.2.1-3) ... Setting up liblzo2-2:amd64 (2.08-1.2) ... Setting up libarchive13:amd64 (3.1.2-11+deb8u3) ... Setting up libasyncns0:amd64 (0.8-5) ... Setting up libatk1.0-data (2.14.0-1) ... Setting up libatk1.0-0:amd64 (2.14.0-1) ... Setting up libatspi2.0-0:amd64 (2.14.0-1) ... Setting up libatk-bridge2.0-0:amd64 (2.14.0-2) ... Setting up libcroco3:amd64 (0.6.8-3+b1) ... Setting up libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Setting up libgdk-pixbuf2.0-common (2.31.1-2+deb8u6) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u6) ... Setting up librsvg2-2:amd64 (2.40.5-1+deb8u2) ... Setting up librsvg2-common:amd64 (2.40.5-1+deb8u2) ... Setting up libgtk2.0-common (2.24.25-3+deb8u2) ... Setting up libxcomposite1:amd64 (1:0.4.4-1) ... Setting up libxinerama1:amd64 (2:1.1.3-1+b1) ... Setting up libxrandr2:amd64 (2:1.4.2-1+deb8u1) ... Setting up shared-mime-info (1.3-1) ... Setting up libgtk2.0-0:amd64 (2.24.25-3+deb8u2) ... Setting up libgtk2.0-bin (2.24.25-3+deb8u2) ... Setting up libatk-wrapper-java (0.30.5-1) ... Setting up libatk-wrapper-java-jni:amd64 (0.30.5-1) ... Setting up libaudio2:amd64 (1.9.4-3) ... Setting up libavahi-glib1:amd64 (0.6.31-5) ... Setting up libbonobo2-common (2.32.1-3) ... Setting up liborbit-2-0:amd64 (1:2.14.19-0.3) ... Setting up libbonobo2-0:amd64 (2.32.1-3) ... Setting up libboost-system1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-chrono1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-date-time1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-filesystem1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-math1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-serialization1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-mpi1.55.0 (1.55.0+dfsg-3) ... Setting up libboost-program-options1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-random1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-regex1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-thread1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libboost-timer1.55.0:amd64 (1.55.0+dfsg-3) ... Setting up libcaca0:amd64 (0.99.beta19-2) ... Setting up libcairo-gobject2:amd64 (1.14.0-2.1+deb8u2) ... Setting up libtdb1:amd64 (1.3.6-0+deb8u1) ... Setting up libvorbisfile3:amd64 (1.3.4-2) ... Setting up libcanberra0:amd64 (0.30-2.1) ... Setting up libdconf1:amd64 (0.22.0-1) ... Setting up dconf-service (0.22.0-1) ... Setting up dconf-gsettings-backend:amd64 (0.22.0-1) ... Setting up hicolor-icon-theme (0.13-1) ... Setting up libwayland-client0:amd64 (1.6.0-2) ... Setting up libwayland-cursor0:amd64 (1.6.0-2) ... Setting up xkb-data (2.12-1) ... Setting up libxkbcommon0:amd64 (0.4.3-2) ... Setting up libcolord2:amd64 (1.2.1-1+b2) ... Setting up libjson-glib-1.0-common (1.0.2-1) ... Setting up libjson-glib-1.0-0:amd64 (1.0.2-1) ... Setting up libproxy1:amd64 (0.4.11-4+b2) ... Setting up glib-networking-common (2.42.0-2) ... Setting up glib-networking-services (2.42.0-2) ... Setting up gsettings-desktop-schemas (3.14.1-1) ... Setting up glib-networking:amd64 (2.42.0-2) ... Setting up libsoup2.4-1:amd64 (2.48.0-1+deb8u1) ... Setting up libsoup-gnome2.4-1:amd64 (2.48.0-1+deb8u1) ... Setting up librest-0.7-0:amd64 (0.7.92-3) ... Setting up libcap-ng0:amd64 (0.7.4-2) ... Setting up libcdparanoia0:amd64 (3.10.2+debian-11) ... Setting up libcfitsio2:amd64 (3.370-2+deb8u1) ... Setting up libcolamd2.8.0:amd64 (1:4.2.1-3) ... Setting up libgudev-1.0-0:amd64 (215-17+deb8u7) ... Setting up libusb-1.0-0:amd64 (2:1.0.19-1) ... Setting up libgusb2:amd64 (0.1.6-5) ... Setting up libcolorhug2:amd64 (1.2.1-1+b2) ... Setting up libqhull6:amd64 (2012.1-5) ... Setting up libcsiro0:amd64 (5.10.0+dfsg-1) ... Setting up libcurl3:amd64 (7.38.0-4+deb8u8) ... Setting up curl (7.38.0-4+deb8u8) ... Setting up libdbus-glib-1-2:amd64 (0.102-1) ... Setting up libdirectfb-1.2-9:amd64 (1.2.10.0-5.1) ... Setting up libdjvulibre-text (3.5.25.4-4) ... Setting up libdjvulibre21:amd64 (3.5.25.4-4+b1) ... Setting up libisc-export95 (1:9.9.5.dfsg-9+deb8u14) ... Setting up libdns-export100 (1:9.9.5.dfsg-9+deb8u14) ... Setting up libelfg0:amd64 (0.8.13-5) ... Setting up libexif12:amd64 (0.6.21-2) ... Setting up libexiv2-13:amd64 (0.24-4.1) ... Setting up libfltk1.3:amd64 (1.3.2-6+b1) ... Setting up libfltk-images1.3:amd64 (1.3.2-6+b1) ... Setting up libfontenc1:amd64 (1:1.1.2-1+b2) ... Setting up libftgl2:amd64 (2.1.3~rc5-4+nmu1) ... Setting up gconf2-common (3.2.6-3) ... Creating config file /etc/gconf/2/path with new version Setting up libgconf-2-4:amd64 (3.2.6-3) ... Setting up libunistring0:amd64 (0.9.3-5.2+b1) ... Setting up libgettextpo0:amd64 (0.19.3-2) ... Setting up libgflags2 (2.0-2.1) ... Setting up libglade2-0:amd64 (1:2.6.4-2) ... Setting up libglew1.10:amd64 (1.10.0-3) ... Setting up libglpk36:amd64 (4.55-1) ... Setting up libgmpxx4ldbl:amd64 (2:6.0.0+dfsg-6) ... Setting up gconf-service (3.2.6-3) ... Setting up psmisc (22.21-2) ... Setting up dbus (1.8.22-0+deb8u1) ... Installing new version of config file /etc/dbus-1/session.conf ... invoke-rc.d: policy-rc.d denied execution of start. Setting up dbus-x11 (1.8.22-0+deb8u1) ... Setting up gconf2 (3.2.6-3) ... Setting up gnome-mime-data (2.18.0-1) ... Setting up libgnomevfs2-common (1:2.24.4-6) ... Setting up libgnomevfs2-0:amd64 (1:2.24.4-6+b1) ... Setting up libgnome2-common (2.32.1-5) ... Setting up libgnome-2-0:amd64 (2.32.1-5) ... Setting up libunwind8 (1.1-3.2) ... Setting up libgoogle-glog0 (0.3.3-2) ... Setting up libgphoto2-port10:amd64 (2.5.4-1.1+b2) ... Setting up libgphoto2-6:amd64 (2.5.4-1.1+b2) ... Setting up libgstreamer1.0-0:amd64 (1.4.4-2+deb8u1) ... Setting up liborc-0.4-0:amd64 (1:0.4.22-1) ... Setting up iso-codes (3.57-1) ... Setting up libgstreamer-plugins-base1.0-0:amd64 (1.4.4-2+deb8u1) ... Setting up libharfbuzz-icu0:amd64 (0.9.35-2) ... Setting up libhdf5-8:amd64 (1.8.13+docs-15+deb8u1) ... Setting up libieee1284-3:amd64 (0.2.11-12) ... Setting up libijs-0.35:amd64 (0.35-10) ... Setting up libilmbase6:amd64 (1.0.1-6.1) ... Setting up libisccfg-export90 (1:9.9.5.dfsg-9+deb8u14) ... Setting up libirs-export91 (1:9.9.5.dfsg-9+deb8u14) ... Setting up libmagickwand-6.q16-2:amd64 (8:6.8.9.9-5+deb8u11) ... Setting up libmng1:amd64 (1.0.10+dfsg-3.1+b3) ... Setting up libmpdec2:amd64 (2.4.1-1) ... Setting up libnotify4:amd64 (0.7.6-2) ... Setting up libnspr4:amd64 (2:4.12-1+debu8u1) ... Setting up libnss3:amd64 (2:3.26-1+debu8u3) ... Setting up libopenexr6:amd64 (1.6.1-8) ... Setting up libcgmanager0:amd64 (0.33-2+deb8u2) ... Setting up libnih1 (1.0.3-4.3) ... Setting up libnih-dbus1 (1.0.3-4.3) ... Setting up init-system-helpers (1.22) ... Setting up cgmanager (0.33-2+deb8u2) ... invoke-rc.d: policy-rc.d denied execution of start. invoke-rc.d: policy-rc.d denied execution of start. Setting up systemd-shim (9-1) ... Setting up libpam-systemd:amd64 (215-17+deb8u7) ... Setting up libpaper1:amd64 (1.1.24+nmu4) ... Setting up libpcsclite1:amd64 (1.8.13-1+deb8u1) ... Setting up libpolkit-gobject-1-0:amd64 (0.105-15~deb8u2) ... Setting up libpolkit-agent-1-0:amd64 (0.105-15~deb8u2) ... Setting up libpolkit-backend-1-0:amd64 (0.105-15~deb8u2) ... Setting up libopenjpeg5:amd64 (1:1.5.2-3) ... Setting up libpoppler46:amd64 (0.26.5-2+deb8u1) ... Setting up qtcore4-l10n (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqtcore4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-test:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqtgui4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-svg:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-opengl:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-sql:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-sql-mysql:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-xml:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqtdbus4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqt4-network:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libpoppler-qt4-4:amd64 (0.26.5-2+deb8u1) ... Setting up libpth20:amd64 (2.0.7-20) ... Setting up libxtst6:amd64 (2:1.2.2-1+deb8u1) ... Setting up libpulse0:amd64 (5.0-13) ... Setting up libexpat1-dev:amd64 (2.1.0-6+deb8u4) ... Setting up libpython2.7-dev:amd64 (2.7.9-2+deb8u1) ... Setting up libpython3.4-minimal:amd64 (3.4.2-1) ... Setting up libpython3.4-stdlib:amd64 (3.4.2-1) ... Setting up libqsastime0:amd64 (5.10.0+dfsg-1) ... Setting up libqt4-xmlpatterns:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Setting up libqtwebkit4:amd64 (2.3.4.dfsg-3) ... Setting up librelion-1.3-1:amd64 (1.3+dfsg-2) ... Setting up libsane-common (1.0.24-8+deb8u2) ... Setting up libv4lconvert0:amd64 (1.6.0-2) ... Setting up libv4l-0:amd64 (1.6.0-2) ... Setting up libsane:amd64 (1.0.24-8+deb8u2) ... Adding scanner group... Setting up libsctp1:amd64 (1.0.16+dfsg-2) ... Setting up libsdl1.2debian:amd64 (1.2.15-10+b1) ... Setting up libsigsegv2:amd64 (2.10-4+b1) ... Setting up libtcl8.5:amd64 (8.5.17-1) ... Setting up tcl8.5 (8.5.17-1) ... Setting up libtcl8.6:amd64 (8.6.2+dfsg-2) ... Setting up libtheora0:amd64 (1.1.1+dfsg.1-6) ... Setting up libtinyxml2.6.2:amd64 (2.6.2-2) ... Setting up libtk8.5:amd64 (8.5.17-1) ... Setting up tk8.5 (8.5.17-1) ... Setting up libtk8.6:amd64 (8.6.2-1) ... Setting up libtre5:amd64 (0.8.0-4+deb8u1) ... Setting up libvisual-0.4-0:amd64 (0.4.0-6) ... Setting up libwmf0.2-7:amd64 (0.2.8.4-10.3+deb8u2) ... Setting up libwxbase3.0-0:amd64 (3.0.2-1+b1) ... Setting up libwxgtk3.0-0:amd64 (3.0.2-1+b1) ... Setting up libxcb-shape0:amd64 (1.10-3+b1) ... Setting up libxerces-c3.1:amd64 (3.1.1-5.1+deb8u3) ... Setting up libxmuu1:amd64 (2:1.1.2-1) ... Setting up libxp6:amd64 (1:1.0.2-2) ... Setting up libxv1:amd64 (2:1.0.10-1+deb8u1) ... Setting up libxxf86dga1:amd64 (2:1.1.4-1+b1) ... Setting up libyaml-0-2:amd64 (0.1.6-3) ... Setting up libzzip-0-13:amd64 (0.13.62-3+deb8u1) ... Setting up lua-filesystem:amd64 (1.6.2-3) ... Setting up lua-lpeg:amd64 (0.12-1) ... Setting up lua-md5:amd64 (1.2+git+1+8d87fee-1) ... Setting up metastudent-data (1.0.1-2) ... Setting up metastudent-data-2 (1.0.0-1) ... Setting up mysql-client-5.5 (5.5.58-0+deb8u1) ... Setting up mysql-server-core-5.5 (5.5.58-0+deb8u1) ... Setting up mysql-server-5.5 (5.5.58-0+deb8u1) ... Installing new version of config file /etc/init.d/mysql ... Installing new version of config file /etc/logrotate.d/mysql-server ... Stopping MySQL database server: mysqld. Starting MySQL database server: mysqld .. Checking for tables which need an upgrade, are corrupt or were not closed cleanly.. Setting up java-common (0.52) ... Setting up ca-certificates-java (20140324) ... Installing new version of config file /etc/ca-certificates/update.d/jks-keystore ... Setting up poppler-data (0.4.7-1) ... Installing new version of config file /etc/ghostscript/cidfmap.d/90gs-cjk-resource-korea1.conf ... Setting up python3.4-minimal (3.4.2-1) ... Setting up libcbf0:amd64 (0.9.2.2-1) ... Setting up libcvector2:amd64 (1.0.3.1-1.1) ... Setting up libcneartree5:amd64 (3.1.1-2.1) ... Setting up libcqrlib2:amd64 (1.1.2-2.1) ... Setting up libfreecontact0 (1.0.21-3+b1) ... Setting up libhmsbeagle1 (2.1.2-1) ... Setting up libsystemd-login0:amd64 (215-17+deb8u7) ... Setting up libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libtxc_dxtn_s2tc.so.0 to provide /usr/lib/x86_64-linux-gnu/libtxc_dxtn.so (libtxc-dxtn-x86_64-linux-gnu) in auto mode Setting up libwebp5:amd64 (0.4.1-1.2+b2) ... Setting up libwebpdemux1:amd64 (0.4.1-1.2+b2) ... Setting up libwebpmux1:amd64 (0.4.1-1.2+b2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... Setting up rate4site (3.0.0-1) ... Setting up dmidecode (2.12-3) ... Setting up isc-dhcp-common (4.3.1-6+deb8u2) ... Setting up isc-dhcp-client (4.3.1-6+deb8u2) ... Setting up libxtables10 (1.4.21-2+b1) ... Setting up manpages (3.74-1) ... 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Setting up at-spi2-core (2.14.0-1) ... Setting up autodock (4.2.6-2) ... ---------------------------------------------------------------------- ______ / \ / \ / \ \ /\ / \ / \ / \/ /\ \/ / \ /____\ AutoDock and AutoGrid are free software, distributed under the terms of the GNU General Public License 2 or later. This allows us to share the code and to be open for improvement from the whole scientific community. The development of the AutoDock suite is entirely funded by research grants. For that reason, we ask you to register at the AutoDock Registration page http://autodock.scripps.edu/downloads/autodock-registration in order to keep track of number of unique downloads, which we use to support the grant applications. Installing the Debian popularity-contest package is also encouraged. Thank you, and happy docking! The AutoDock Development Team If you plan to use AutoDock for commercial purposes we encourage donations to the Olson laboratory to help support further development of the AutoDock 4 suite of programs. Donation information provided on the download page. ---------------------------------------------------------------------- Setting up autogrid (4.2.6-2) ... Setting up autopoint (0.19.3-2) ... Setting up autotools-dev (20140911.1) ... Setting up libball1.4-data (1.4.2+20140406-1) ... Setting up libball1.4 (1.4.2+20140406-1+b2) ... Setting up libballview1.4 (1.4.2+20140406-1+b2) ... Setting up python-sip (4.16.4+dfsg-1) ... Setting up python-ball (1.4.2+20140406-1+b2) ... Setting up python-ballview (1.4.2+20140406-1+b2) ... Setting up ballview (1.4.2+20140406-1+b2) ... Setting up libbamtools2.3.0 (2.3.0+dfsg-2) ... Setting up libjsoncpp0 (0.6.0~rc2-3.1) ... Setting up bamtools (2.3.0+dfsg-2) ... Setting up bedtools (2.21.0-1) ... Setting up binfmt-support (2.1.5-1) ... Installing new version of config file /etc/init.d/binfmt-support ... update-binfmts: warning: found manually created entry for jar in /proc/sys/fs/binfmt_misc; leaving it alone invoke-rc.d: policy-rc.d denied execution of start. Setting up ant-contrib (1.0~b3+svn177-6) ... Setting up libhamcrest-java (1.3-5) ... Setting up junit4 (4.11-3) ... Setting up libcommons-codec-java (1.9-1) ... Setting up libcommons-logging-java (1.2-1) ... Setting up libcommons-httpclient-java (3.1-11+deb8u1) ... Setting up libmail-java (1.5.2-3) ... Setting up libjcommon-java (1.0.16-4) ... Setting up libjaxen-java (1.1.6-1) ... Setting up libjdom1-java (1.1.3-1) ... Setting up libjgoodies-common-java (1.4.0-2) ... Setting up libjgoodies-forms-java (1.6.0-4) ... Setting up libjzlib-java (1.1.3-1) ... Setting up libjsch-java (0.1.51-1) ... Setting up liblog4j1.2-java (1.2.17-5) ... Setting up libmysql-java (5.1.42-1~deb8u1) ... Setting up liboro-java (2.0.8a-9) ... Setting up libisorelax-java (20041111-8) ... Setting up librelaxng-datatype-java (1.0+ds1-3) ... Setting up libxerces2-java (2.11.0-7) ... Setting up libmsv-java (2009.1+dfsg1-4) ... Setting up libdom4j-java (1.6.1+dfsg.3-2) ... Setting up libxom-java (1.2.10-1) ... Setting up libsaxonb-java (9.1.0.8+dfsg-1) ... Setting up biomaj (1.2.3-4) ... Setting up libbio-perl-run-perl (1.6.9-2) ... Setting up bioperl-run (1.6.9-2) ... Setting up biosquid (1.9g+cvs20050121-4) ... Setting up blast2 (1:2.2.26.20120620-8) ... Setting up menu (2.1.47) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-1) ... Setting up blt (2.5.3+dfsg-1) ... Setting up python-tk (2.7.8-2+b1) ... Setting up boxshade (3.3.1-8) ... Setting up make (4.0-8.1) ... Setting up libdpkg-perl (1.17.27) ... Setting up dpkg-dev (1.17.27) ... Setting up build-essential (11.7) ... Setting up bwa (0.7.10-1) ... Setting up bzip2-doc (1.0.6-7) ... Setting up libcassie1 (1.0.1+dfsg-3+b1) ... Setting up cassiopee (1.0.1+dfsg-3+b1) ... 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Setting up libgtkglext1 (1.2.0-3.2) ... Setting up gamgi (0.17.1-1) ... Setting up python-reportlab-accel:amd64 (3.1.8-3+deb8u1) ... Setting up python-reportlab (3.1.8-3+deb8u1) ... Setting up python-biopython (1.64+dfsg-5) ... Setting up bowtie (1.1.1-2) ... Setting up bowtie2 (2.2.4-1) ... Setting up seqan-apps (1.4.1+dfsg-2) ... Setting up gasic (0.0.r18-2) ... Setting up gdpc (2.2.5-3) ... Setting up libsqlite0 (2.8.17-12) ... Setting up gentle (1.9+cvs20100605+dfsg1-3) ... Setting up libglpk-java (1.0.37-1) ... Setting up glpk-utils (4.55-1) ... Setting up tophat (2.0.13+dfsg-1) ... Setting up giira (0.0.20140210-2) ... Setting up glam2 (1064-3) ... Setting up aglfn (1.7-3) ... Setting up gnuplot-tex (4.6.6-2) ... Setting up gnuplot-data (4.6.6-2) ... Setting up gnuplot-nox (4.6.6-2) ... update-alternatives: using /usr/bin/gnuplot4-nox to provide /usr/bin/gnuplot (gnuplot) in auto mode update-alternatives: using /usr/bin/gnuplot4-nox to provide /usr/bin/gnuplot4 (gnuplot4) in auto mode Setting up gnuplot (4.6.6-2) ... Setting up gstreamer1.0-plugins-base:amd64 (1.4.4-2+deb8u1) ... Setting up heirloom-mailx (12.5-4) ... Setting up hmmer (3.1b1-3) ... Setting up libpvm3 (3.4.5-12.6) ... Setting up hmmer2 (2.3.2-8) ... Setting up idba (1.1.2-1) ... Setting up imagemagick-6.q16 (8:6.8.9.9-5+deb8u11) ... Setting up imagemagick (8:6.8.9.9-5+deb8u11) ... update-alternatives: warning: alternative /usr/bin/compare.im6 (part of link group compare) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/compare is dangling; it will be updated with best choice update-alternatives: using /usr/bin/compare-im6 to provide /usr/bin/compare (compare) in auto mode update-alternatives: warning: alternative /usr/bin/animate.im6 (part of link group animate) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/animate is dangling; it will be updated with best choice update-alternatives: using /usr/bin/animate-im6 to provide /usr/bin/animate (animate) in auto mode update-alternatives: warning: alternative /usr/bin/convert.im6 (part of link group convert) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/convert is dangling; it will be updated with best choice update-alternatives: using /usr/bin/convert-im6 to provide /usr/bin/convert (convert) in auto mode update-alternatives: warning: alternative /usr/bin/composite.im6 (part of link group composite) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/composite is dangling; it will be updated with best choice update-alternatives: using /usr/bin/composite-im6 to provide /usr/bin/composite (composite) in auto mode update-alternatives: warning: alternative /usr/bin/conjure.im6 (part of link group conjure) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/conjure is dangling; it will be updated with best choice update-alternatives: using /usr/bin/conjure-im6 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: warning: alternative /usr/bin/import.im6 (part of link group import) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/import is dangling; it will be updated with best choice update-alternatives: using /usr/bin/import-im6 to provide /usr/bin/import (import) in auto mode update-alternatives: warning: alternative /usr/bin/identify.im6 (part of link group identify) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/identify is dangling; it will be updated with best choice update-alternatives: using /usr/bin/identify-im6 to provide /usr/bin/identify (identify) in auto mode update-alternatives: warning: alternative /usr/bin/stream.im6 (part of link group stream) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/stream is dangling; it will be updated with best choice update-alternatives: using /usr/bin/stream-im6 to provide /usr/bin/stream (stream) in auto mode update-alternatives: warning: alternative /usr/bin/display.im6 (part of link group display) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/display is dangling; it will be updated with best choice update-alternatives: using /usr/bin/display-im6 to provide /usr/bin/display (display) in auto mode update-alternatives: warning: alternative /usr/bin/montage.im6 (part of link group montage) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/montage is dangling; it will be updated with best choice update-alternatives: using /usr/bin/montage-im6 to provide /usr/bin/montage (montage) in auto mode update-alternatives: warning: alternative /usr/bin/mogrify.im6 (part of link group mogrify) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/mogrify is dangling; it will be updated with best choice update-alternatives: using /usr/bin/mogrify-im6 to provide /usr/bin/mogrify (mogrify) in auto mode Setting up infernal (1.1.1-2) ... Setting up libcommons-compress-java (1.9-1) ... Setting up libcommons-net1-java (1.4.1-5) ... Setting up ipig (0.0.r5-1) ... Setting up python-pexpect (3.2-1) ... Setting up python-simplegeneric (0.8.1-1) ... Setting up ipython (2.3.0-2) ... Setting up unzip (6.0-16+deb8u3) ... Setting up java-wrappers (0.1.28) ... Setting up icedtea-netx-common (1.5.3-1) ... Setting up javahelp2 (2.0.05.ds1-7) ... Setting up libcommons-io-java (2.4-2) ... Setting up libapache-mime4j-java (0.7.2-3) ... Setting up libwsdl4j-java (1.6.3-1) ... Setting up libaxis-java (1.4-22) ... Setting up libcastor-core-java (1.3.2-3) ... Setting up libcastor-xml-java (1.3.2-3) ... Setting up libhttpcore-java (4.3.3-1) ... Setting up libhttpclient-java (4.3.5-2) ... Setting up libhttpmime-java (4.3.5-2) ... Setting up libmiglayout-java (4.2-1) ... Setting up javascript-common (11) ... apache2_invoke: Enable configuration javascript-common invoke-rc.d: policy-rc.d denied execution of reload. Setting up libjellyfish-2.0-2 (2.1.4-1) ... Setting up jellyfish (2.1.4-1) ... Setting up libbcprov-java (1.49+dfsg-3+deb8u2) ... Setting up libbcpkix-java (1.49+dfsg-3+deb8u2) ... Setting up libbcmail-java (1.49+dfsg-3+deb8u2) ... Setting up libitext-java (2.1.7-9) ... Setting up king (2.21.120420+dfsg-1) ... Setting up kissplice (2.2.1-3) ... Setting up ksh (93u+20120801-1) ... update-alternatives: using /bin/ksh93 to provide /bin/ksh (ksh) in auto mode Setting up last-align (490-1) ... Setting up libarchive-extract-perl (0.72-1) ... Setting up libclass-method-modifiers-perl (2.11-1) ... Setting up libimport-into-perl (1.002004-1) ... Setting up librole-tiny-perl (1.003004-1) ... Setting up libstrictures-perl (1.005005-1) ... Setting up libmoo-perl (1.006001-1) ... Setting up libexporter-tiny-perl (0.038-2) ... Setting up libtype-tiny-perl (1.000004-1) ... Setting up libarray-compare-perl (2.11-1) ... Setting up libasprintf-dev:amd64 (0.19.3-2) ... 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Setting up libyaml-perl (1.13-1) ... Setting up libyaml-tiny-perl (1.64-1) ... Setting up libzeep3.0 (3.0.2-1+b2) ... Setting up zip (3.0-8) ... Setting up xdg-utils (1.1.0~rc1+git20111210-7.4) ... Setting up r-base-core (3.1.1-1+deb8u1) ... Installing new version of config file /etc/R/Makeconf ... Installing new version of config file /etc/R/ldpaths ... Installing new version of config file /etc/R/repositories ... Installing new version of config file /etc/bash_completion.d/R ... Replacing config file /etc/R/Renviron with new version Setting up littler (0.2.1-1) ... Setting up lksctp-tools (1.0.16+dfsg-2) ... Setting up lmodern (2.004.4-5) ... Setting up swi-prolog-nox (6.6.6-5) ... update-alternatives: using /usr/bin/swipl to provide /usr/bin/prolog (prolog) in auto mode Setting up loki (2.4.7.4-5) ... Setting up genometools-common (1.5.3-2) ... Setting up libgenometools0 (1.5.3-2) ... Setting up ltrsift (1.0.2-1) ... Setting up macs (2.0.9.1-1) ... Setting up manpages-dev (3.74-1) ... Setting up mapsembler2 (2.1.6+dfsg-1) ... Setting up maqview (0.2.5-6) ... Setting up massxpert-data (3.4.1-1) ... Setting up massxpert (3.4.1-1) ... Setting up melting (4.3.1+dfsg-1) ... Setting up nast-ier (20101212+dfsg-1) ... Setting up wigeon (20101212+dfsg-1) ... Setting up microbiomeutil (20101212+dfsg-1) ... Setting up minia (1.6088-1) ... Setting up mira-assembler (4.0.2-1+b1) ... Setting up mothur (1.33.3+dfsg-2) ... Setting up mrbayes (3.2.3+dfsg-1) ... Setting up rsync (3.1.1-3) ... invoke-rc.d: policy-rc.d denied execution of restart. Setting up mrs (6.0.5+dfsg-1) ... Creating mrs-dba user... Setting up mustang (3.2.2-1) ... Setting up ncbi-blast+ (2.2.29-3) ... Setting up ncbi-epcr (2.3.12-1-2) ... Setting up ncbi-tools-bin (6.1.20120620-8) ... Setting up ncoils (2002-4) ... Setting up topp (1.11.1-5) ... Setting up openms (1.11.1-5) ... Setting up paraclu (9-1) ... Setting up parsinsert (1.04-1) ... Setting up pdb2pqr (1.9.0+dfsg-1) ... Setting up perm (0.4.0-1) ... Setting up phylip (1:3.696+dfsg-1) ... Setting up phyml (2:20120412-2) ... Setting up phyutility (2.7.3-1) ... Setting up picard-tools (1.113-1) ... Setting up plasmidomics (0.2.0-3) ... Setting up prank (0.0.140110-1) ... Setting up preview-latex-style (11.87-3+deb8u1) ... Setting up prime-phylo (1.0.11-2) ... Setting up primer3 (2.3.6-1) ... Setting up probabel (0.4.3-2) ... Setting up probalign (1.4-3) ... Setting up prodigal (1:2.6.1-1) ... Setting up psutils (1.17.dfsg-2) ... Setting up python-wxversion (3.0.1.1+dfsg-2) ... Setting up python-wxgtk3.0 (3.0.1.1+dfsg-2) ... update-alternatives: using /usr/lib/wx/python/wx3.0.pth to provide /usr/lib/wx/python/wx.pth (wx.pth) in auto mode Setting up python-yaml (3.11-2) ... Setting up pycorrfit (0.8.3-2) ... Setting up pymol (1.7.2.1-1) ... Setting up sphinx-common (1.2.3+dfsg-1) ... Setting up pyqi (0.3.2+dfsg-1) ... Setting up python-pyfits (1:3.3-2+b1) ... Setting up python-multipletau (0.1.4-1) ... Setting up pyscanfcs (0.2.2-2) ... Setting up python-all (2.7.9-1) ... Setting up python2.7-dev (2.7.9-2+deb8u1) ... Setting up python-dev (2.7.9-1) ... Setting up python-all-dev (2.7.9-1) ... Setting up python-cogent (1.5.3-2) ... Setting up python-h5py (2.2.1-1.1+b1) ... Setting up python-biom-format (2.1+dfsg-1) ... Setting up python-biopython-doc (1.64+dfsg-5) ... Setting up python-chardet (2.3.0-1) ... Setting up python-crypto (2.6.1-5+deb8u1) ... Setting up python-roman (2.0.0-1) ... Setting up python-egenix-mxtools (3.2.8-1) ... Setting up python-egenix-mxdatetime (3.2.8-1) ... Setting up python-gobject-2 (2.28.6-12+b1) ... Setting up python-gtk2 (2.24.0-4) ... Setting up python-glade2 (2.24.0-4) ... Setting up python-gmpy (1.15-1) ... Setting up python-pil:amd64 (2.6.1-2+deb8u3) ... Setting up python-imaging (2.6.1-2+deb8u3) ... Setting up python-markupsafe (0.23-1+b1) ... Setting up python-jinja2 (2.7.3-1) ... Setting up python-lxml (3.4.0-1) ... Setting up python-mako (1.0.0+dfsg-0.1) ... Setting up python-mpmath (0.19-1) ... Setting up python-mysqldb (1.2.3-2.1) ... Setting up python-pyglet (1.1.4.dfsg-2) ... Setting up python-pygments (2.0.1+dfsg-1.1+deb8u1) ... Setting up python-qcli (0.1.0-1) ... Setting up python-renderpm:amd64 (3.1.8-3+deb8u1) ... Setting up python-sqlalchemy (0.9.8+dfsg-0.1) ... Setting up python-sqlalchemy-ext (0.9.8+dfsg-0.1) ... Setting up python-sympy (0.7.5-3) ... Setting up qiime-data (1.8.0+dfsg-4) ... Setting up r-base-dev (3.1.1-1+deb8u1) ... Setting up r-cran-dbi (0.3.1-1) ... Setting up r-cran-rsqlite (0.11.4-3) ... Setting up r-bioc-biocgenerics (0.10.0-1) ... Setting up r-bioc-biobase (2.24.0-1) ... Setting up r-bioc-iranges (1.22.10-1) ... Setting up r-bioc-genomeinfodb (1.0.2-2) ... Setting up r-bioc-annotationdbi (1.26.1-1) ... Setting up r-cran-codetools (0.2-9-1) ... Setting up r-cran-iterators (1.0.7-1) ... Setting up r-cran-foreach (1.4.2-1) ... Setting up r-cran-checkmate (1.5.0-1) ... Setting up r-cran-bbmisc (1.7-1) ... Setting up r-cran-brew (1.0-6-1) ... Setting up r-cran-digest (0.6.4-1) ... Setting up r-cran-pkgkitten (0.1.2-1) ... Setting up r-cran-rcpp (0.11.3-1) ... Setting up r-cran-plyr (1.8.1-2) ... Setting up r-cran-stringr (0.6.2-2) ... Setting up r-cran-base64enc (0.1-2-1) ... Setting up r-cran-sendmailr (1.2-1-1) ... Setting up r-cran-fail (1.2-1) ... Setting up r-cran-batchjobs (1.4-1) ... Setting up r-bioc-biocparallel (0.6.1-1) ... Setting up r-cran-xml (3.98-1.1-1) ... Setting up r-cran-bitops (1.0-6-1) ... Setting up r-cran-rcurl (1.95-4.3-1+deb8u1) ... Setting up r-bioc-biomart (2.20.0-1) ... Setting up r-bioc-xvector (0.4.0-1) ... Setting up r-bioc-biostrings (2.32.1-1) ... Setting up r-cran-dichromat (2.0.0-3) ... Setting up r-cran-foreign (0.8.61-1) ... Setting up r-cran-chron (2.3-45-1) ... Setting up r-cran-lattice (0.20-29-1) ... Setting up r-cran-cluster (1.15.3-1) ... Setting up r-cran-survival (2.37-7-1) ... Setting up r-cran-formula (1.1-2-1) ... Setting up r-cran-rpart (4.1-8-1) ... Setting up r-cran-rcolorbrewer (1.0-5-2) ... Setting up r-cran-latticeextra (0.6-26-1) ... Setting up r-cran-hmisc (3.14-5-1) ... Setting up r-cran-nnet (7.3-8-1) ... Setting up r-cran-colorspace (1.2-4-1) ... Setting up r-cran-munsell (0.4.2-1) ... Setting up r-cran-labeling (0.3-1) ... Setting up r-cran-scales (0.2.4-1) ... Setting up r-bioc-genomicranges (1.16.4-2) ... Setting up r-bioc-rsamtools (1.16.1-2) ... Setting up r-bioc-bsgenome (1.32.0-1) ... Setting up r-bioc-genomicalignments (1.0.6-1) ... Setting up r-bioc-rtracklayer (1.24.2-1) ... Setting up r-bioc-genomicfeatures (1.16.3-1) ... Setting up r-bioc-variantannotation (1.10.5-1) ... Setting up r-bioc-biovizbase (1.12.3-1) ... Setting up r-cran-reshape2 (1.4-1) ... Setting up r-cran-gtable (0.1.2-1.1) ... Setting up r-cran-mass (7.3-34-1) ... Setting up r-cran-proto (0.3-10-1) ... Setting up r-cran-ggplot2 (1.0.0-1) ... Setting up r-cran-fastcluster (1.1.13-1) ... Setting up r-cran-r.methodss3 (1.6.1-1) ... Setting up r-cran-matrixstats (0.10.3-1) ... Setting up r-bioc-gviz (1.8.4-1) ... Setting up r-bioc-cummerbund (2.6.1-1) ... Setting up r-bioc-hilbertvis (1.24.0-1) ... Setting up r-cran-hwriter (1.3.2-1) ... Setting up r-bioc-shortread (1.22.0-1) ... Setting up r-cran-abind (1.4-0-2) ... Setting up r-cran-nlme (3.1.117-1) ... Setting up r-cran-ape (3.1-4-1) ... Setting up r-cran-boot (1.3-13-1) ... Setting up r-cran-class (7.3-11-1) ... Setting up r-cran-multicore (0.2-1) ... Setting up r-cran-domc (1.3.3-1) ... Setting up r-cran-doparallel (1.0.8-1) ... Setting up r-cran-evaluate (0.5.5-1) ... Setting up r-cran-g.data (2.4-1) ... Setting up r-cran-genabel.data (1.0.0-1) ... Setting up r-cran-genabel (1.8-0-1) ... Setting up r-cran-getopt (1.20.0-1) ... Setting up r-cran-kernsmooth (2.23-13-1) ... Setting up r-cran-maps (2.3-7-1) ... Setting up r-cran-mapproj (1.2-2-1) ... Setting up r-cran-matrix (1.1-4-1) ... Setting up r-cran-mgcv (1.8-3-1) ... Setting up r-cran-optparse (1.2.0-1) ... Setting up r-cran-permute (0.8-3-1) ... Setting up r-cran-qtl (1.33-7-1) ... Setting up r-cran-reshape (0.8.5-1) ... Setting up r-cran-sp (1:1.0-15-1) ... Setting up r-cran-spatial (7.3-8-1) ... Setting up tk8.6 (8.6.2-1) ... Setting up tcl8.6 (8.6.2+dfsg-2) ... Setting up tcl (8.6.0+8) ... Setting up tk (8.6.0+8) ... Setting up tk-table (2.10-2) ... Setting up r-cran-tcltk2 (1.2-10-1) ... Setting up r-cran-testthat (0.9.1-1) ... Setting up r-cran-vegan (2.0-10-1) ... Setting up r-doc-html (3.1.1-1+deb8u1) ... Setting up r-other-bio3d (1.1-5-1) ... Setting up r-other-mott-happy.hbrem (2.4-1) ... Setting up r-recommended (3.1.1-1+deb8u1) ... Setting up rasmol (2.7.5.2-2) ... Setting up raxml (8.1.1-3) ... Setting up readseq (1-11) ... Setting up relion-bin (1.3+dfsg-2) ... Setting up rename (0.20-3) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up rnahybrid (2.1.1-2) ... Setting up rtax (0.984-2) ... Setting up rubygems-integration (1.8) ... Setting up libruby2.1:amd64 (2.1.5-2+deb8u3) ... Setting up ruby2.1 (2.1.5-2+deb8u3) ... Setting up ruby (1:2.1.5+deb8u2) ... Setting up saint (2.4.0+dfsg-1) ... Setting up samtools (0.1.19-1) ... Setting up update-inetd (4.43) ... Setting up sane-utils (1.0.24-8+deb8u2) ... Adding saned group and user... Adding user saned to group scanner invoke-rc.d: policy-rc.d denied execution of start. Setting up seaview (1:4.5.3.1-2) ... Setting up seqtk (1.0-1) ... Setting up sibsim4 (0.20-2) ... Setting up sim4 (0.0.20121010-1) ... Setting up smalt (0.7.6-4) ... Setting up snp-sites (1.5.0-1) ... Setting up soapdenovo (1.05-2) ... Setting up soapdenovo2 (240+dfsg-2) ... Setting up sphinx-doc (1.2.3+dfsg-1) ... Setting up squizz (0.99b+dfsg-3) ... Setting up sra-toolkit-libs0 (2.3.5-2+dfsg-1) ... Setting up sra-toolkit (2.3.5-2+dfsg-1) ... Setting up ssl-cert (1.0.35) ... Setting up staden-common (2.0.0+b10-1.1) ... Setting up staden-io-lib-utils (1.13.7-1) ... Setting up tklib (0.6-1+deb8u1) ... Setting up staden (2.0.0+b10-1.1) ... Setting up t-coffee (11.00.8cbe486-1) ... Setting up tabix (1.1-1) ... Setting up tcllib (1.16-dfsg-2) ... Setting up tcpd (7.6.q-25) ... Setting up tex-gyre (20140520-1) ... Setting up ttf-adf-universalis (0.20090423-2) ... Setting up ttf-adf-gillius (0.20090423-2) ... Setting up fonts-stix (1.1.1-1) ... Setting up ttf-adf-accanthis (0.20090423-2) ... Setting up theseus (3.0.0-1) ... Setting up tigr-glimmer (3.02-3) ... Setting up tm-align (20140601+dfsg-1) ... Setting up transtermhp (2.09-2) ... Setting up tree-puzzle (5.2-7+b1) ... Setting up treeviewx (0.5.1+20100823-3) ... Setting up uc-echo (1.12-7) ... Setting up ufraw-batch (0.20-2+deb8u1) ... Setting up velvet (1.2.10+dfsg1-1) ... Setting up velvetoptimiser (2.2.5-2) ... Setting up xbitmaps (1.1.1-2) ... Setting up xterm (312-2) ... Installing new version of config file /etc/X11/app-defaults/XTerm ... Setting up wise-data (2.4.1-17) ... Setting up wise (2.4.1-17) ... Setting up x11-utils (7.7+2) ... Installing new version of config file /etc/X11/app-defaults/Editres-color ... Installing new version of config file /etc/X11/app-defaults/Xfd ... Installing new version of config file /etc/X11/app-defaults/Editres ... Setting up x11-xserver-utils (7.7+3+b1) ... Setting up xauth (1:1.0.9-1) ... Setting up xdg-user-dirs (0.15-2) ... Setting up xsltproc (1.1.28-2+deb8u3) ... Setting up zalign (0.9.1-1+b1) ... Setting up autodock-vina (1.1.2-3+b1) ... Setting up concavity (0.1-2) ... Setting up conservation-code (20110309.0-3) ... Setting up disulfinder-data (1.2.11-4) ... Setting up disulfinder (1.2.11-4) ... Setting up edtsurf (0.2009-3) ... Setting up fasttree (2.1.7-2) ... Setting up libffindex0 (0.9.9.3-2) ... Setting up ffindex (0.9.9.3-2) ... Setting up freecontact (1.0.21-3+b1) ... Setting up genometools (1.5.3-2) ... Setting up gromacs-data (5.0.2-1) ... Setting up gromacs (5.0.2-1) ... Setting up hhsuite-data (2.0.16-5) ... Setting up hhsuite (2.0.16-5) ... Setting up icedtea-netx:amd64 (1.5.3-1) ... Setting up libconfig-inifiles-perl (2.83-3) ... Setting up libev-perl (4.18-1) ... Setting up libhwloc-plugins (1.10.0-3) ... Setting up libjson0:amd64 (0.11-4) ... Setting up librg-exception-perl (1.0.3-1) ... Setting up profphd-utils (1.0.10-1) ... Setting up librg-utils-perl (1.0.43-2) ... Setting up libset-scalar-perl (1.29-1) ... Setting up lynx-cur (2.8.9dev1-2+deb8u1) ... Installing new version of config file /etc/lynx-cur/lynx.cfg ... Setting up lynx (2.8.9dev1-2+deb8u1) ... Setting up ncbi-seg (0.0.20000620-2) ... Setting up neobio (0.0.20030929-1.1) ... Setting up profnet-norsnet (1.0.22-2) ... Setting up norsnet (1.0.17-1) ... Setting up norsp (1.0.6-1) ... Setting up pp-popularity-contest (1.0.6-2+b1) ... Setting up predictnls (1.0.20-1) ... Setting up profnet-bval (1.0.22-2) ... Setting up profbval (1.0.22-1) ... Setting up profnet-isis (1.0.22-2) ... Setting up profisis (1.0.11-1) ... Setting up profnet-prof (1.0.22-2) ... Setting up profphd-net (1.0.22-2) ... Setting up profphd (1.0.40-1) ... Setting up proftmb (1.1.12-2) ... Setting up profnet-chop (1.0.22-2) ... Setting up profnet-con (1.0.22-2) ... Setting up profnet-md (1.0.22-2) ... Setting up profnet-snapfun (1.0.22-2) ... Setting up pvm (3.4.5-12.6) ... update-alternatives: using /usr/bin/rsh to provide /usr/lib/pvm3/bin/rsh (pvm-rsh) in auto mode Setting up pynast (1.2.2-1) ... Setting up qiime (1.8.0+dfsg-4) ... Installing new version of config file /etc/qiime/qiime_config ... Setting up python-gdata (2.0.18+dfsg1-2) ... Setting up python-gobject (3.14.0-1) ... Setting up python-mpi4py (1.3.1+hg20131106-2) ... Setting up ray (2.3.1-1) ... Setting up snap (2013-11-29-1) ... Setting up ttf-freefont (20120503-4) ... Setting up ttf-liberation (1.07.4-1) ... Setting up vcftools (0.1.12+dfsg-1) ... Setting up gawk (1:4.1.1+dfsg-1) ... Processing triggers for sgml-base (1.26+nmu4) ... Setting up python-docutils (0.12+dfsg-1) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.2.3+dfsg-1) ... Processing triggers for tex-common (5.03) ... Setting up swi-prolog-x (6.6.6-5) ... Setting up swi-prolog (6.6.6-5) ... Setting up logol-bin (1.7.0-2) ... Processing triggers for menu (2.1.47) ... Setting up blends-common (0.6.92.2) ... Setting up med-config (2.0) ... Setting up science-config (1.4) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d.... done. done. Setting up openjdk-7-jre-headless:amd64 (7u111-2.6.7-1~deb8u1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode update-binfmts: warning: found manually created entry for jar in /proc/sys/fs/binfmt_misc; leaving it alone Setting up default-jre-headless (2:1.7-52) ... Setting up openjdk-7-jre:amd64 (7u111-2.6.7-1~deb8u1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up default-jre (2:1.7-52) ... Setting up openjdk-7-jdk:amd64 (7u111-2.6.7-1~deb8u1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javah to provide /usr/bin/javah (javah) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode Setting up jalview (2.7.dfsg-4) ... Setting up proalign (0.603-1) ... Setting up trimmomatic (0.32+dfsg-4) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Setting up libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Setting up tasksel (3.31+deb8u1) ... Setting up libgtk-3-bin (3.14.5-1+deb8u1) ... Setting up adwaita-icon-theme (3.14.0-2) ... Setting up python3 (3.4.2-2) ... Setting up dh-python (1.20141111-2) ... Setting up libgs9 (9.06~dfsg-2+deb8u6) ... Setting up ghostscript (9.06~dfsg-2+deb8u6) ... Setting up texlive-binaries (2014.20140926.35254-6) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Building format(s) --refresh. This may take some time... done. Setting up dvipng (1.14-2+b1) ... Setting up python3-pkg-resources (5.5.1-1) ... Setting up python3-nose (1.3.4-1) ... Setting up fastaq (1.5.0-1) ... Setting up texlive-base (2014.20141024-2+deb8u1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Setting up ps2eps (1.68+binaryfree-1) ... Setting up raster3d (3.0-3-1) ... Setting up med-tasks (2.0) ... Setting up med-bio (2.0) ... Setting up science-tasks (1.4) ... Setting up science-biology (1.4) ... Setting up libwww-perl (6.08-1) ... Setting up libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... apache2_invoke perl: already enabled invoke-rc.d: policy-rc.d denied execution of restart. Setting up libapache2-reload-perl (0.12-3) ... Setting up libxml-parser-perl (2.41-3) ... Setting up libxml-twig-perl (1:3.48-1) ... Setting up libnet-dbus-perl (1.0.0-2+b2) ... Setting up libvm-ec2-perl (1.28-1) ... Setting up gbrowse (2.54+dfsg-3) ... Installing new version of config file /etc/gbrowse/GBrowse.conf ... Installing new version of config file /etc/gbrowse/synteny/oryza.synconf.disabled ... Installing new version of config file /etc/gbrowse/plugins/LDAPAuthenticate.pm ... Installing new version of config file /etc/gbrowse/plugins/SequenceDumper.pm ... Installing new version of config file /etc/gbrowse/languages/is.pm ... Installing new version of config file /etc/init.d/gbrowse-slave ... apache2_invoke: Enable configuration gbrowse invoke-rc.d: policy-rc.d denied execution of reload. Setting up libsoap-lite-perl (1.11-1) ... Setting up tasksel-data (3.31+deb8u1) ... Setting up libgtk-3-common (3.14.5-1+deb8u1) ... Setting up libgtk-3-0:amd64 (3.14.5-1+deb8u1) ... Setting up libcanberra-gtk3-0:amd64 (0.30-2.1) ... Setting up libapache-dbi-perl (1.12-1) ... Setting up libcanberra-gtk3-module:amd64 (0.30-2.1) ... Setting up libgraphviz-perl (2.16-1) ... Setting up libgo-perl (0.15-1) ... Setting up libxml-checker-perl (0.13-6) ... Setting up libxmlrpc-lite-perl (0.717-1) ... Setting up metastudent (1.0.11-2) ... Setting up notification-daemon (0.7.6-2) ... Setting up perlprimer (1.1.21-2) ... Setting up predictprotein (1.1.06-1) ... Processing triggers for tex-common (5.03) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-generic-recommended (2014.20141024-2+deb8u1) ... Setting up texlive-font-utils (2014.20141024-1) ... Setting up texlive-fonts-extra (2014.20141024-1) ... Setting up texlive-fonts-extra-doc (2014.20141024-1) ... Setting up texlive-fonts-recommended (2014.20141024-2+deb8u1) ... Setting up texlive-fonts-recommended-doc (2014.20141024-2+deb8u1) ... Setting up texlive-latex-base-doc (2014.20141024-2+deb8u1) ... Setting up texlive-latex-extra-doc (2014.20141024-1) ... Setting up texlive-latex-recommended-doc (2014.20141024-2+deb8u1) ... Setting up texlive-pictures-doc (2014.20141024-2+deb8u1) ... Setting up texlive-pstricks-doc (2014.20141024-1) ... Setting up texlive-latex-base (2014.20141024-2+deb8u1) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-extra-utils (2014.20141024-1) ... Setting up texlive-math-extra (2014.20141024-1) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-math-extra.cnf. This may take some time... done. Setting up tipa (2:1.3-20) ... Setting up texlive-latex-recommended (2014.20141024-2+deb8u1) ... Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-pictures (2014.20141024-2+deb8u1) ... Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-pstricks (2014.20141024-1) ... Setting up texlive-latex-extra (2014.20141024-1) ... Setting up prerex (6.5.3-1) ... Setting up vprerex (6.5.3-1) ... Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up prosper (1.00.4+cvs.2007.05.01-4) ... Running mktexlsr. This may take some time... done. Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for dictionaries-common (1.23.17) ... aspell-autobuildhash: processing: en [en-common]. aspell-autobuildhash: processing: en [en-variant_0]. aspell-autobuildhash: processing: en [en-variant_1]. aspell-autobuildhash: processing: en [en-variant_2]. aspell-autobuildhash: processing: en [en-w_accents-only]. aspell-autobuildhash: processing: en [en-wo_accents-only]. aspell-autobuildhash: processing: en [en_CA-variant_0]. aspell-autobuildhash: processing: en [en_CA-variant_1]. aspell-autobuildhash: processing: en [en_CA-w_accents-only]. aspell-autobuildhash: processing: en [en_CA-wo_accents-only]. aspell-autobuildhash: processing: en [en_GB-ise-w_accents-only]. aspell-autobuildhash: processing: en [en_GB-ise-wo_accents-only]. aspell-autobuildhash: processing: en [en_GB-ize-w_accents-only]. aspell-autobuildhash: processing: en [en_GB-ize-wo_accents-only]. aspell-autobuildhash: processing: en [en_GB-variant_0]. aspell-autobuildhash: processing: en [en_GB-variant_1]. aspell-autobuildhash: processing: en [en_US-w_accents-only]. aspell-autobuildhash: processing: en [en_US-wo_accents-only]. Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u6) ... Processing triggers for python-support (1.0.15) ... Processing triggers for dbus (1.8.22-0+deb8u1) ... Processing triggers for menu (2.1.47) ... 14m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', '-yf', 'dist-upgrade'] 14m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 14m20.8s DUMP: 25132ed99e8549297ce3c8ebf4f536e8 - 14m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 14m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'show', 'science-biology'] 14m20.9s DUMP: Package: science-biology Source: debian-science Version: 1.4 Installed-Size: 62 Maintainer: Debian Science Team Architecture: all Depends: science-tasks (= 1.4), science-config (= 1.4) Recommends: bauble, critterding, med-bio Suggests: avida-base, genesis, med-bio-dev Description-en: Debian Science Biology packages This metapackage will install Debian Science packages related to Biology. You might also be interested in the field::biology debtag. . This metapackage makes use of the packages med-bio and med-bio-dev (for development of biological applications) which are maintained by Debian Med - another Debian Pure Blend. If you are a biologist you are most probably interested in the Debian Med project which deals with biology and medicine in much more detail then the more general Debian Science. Description-md5: 59633f821572a37f2f07d2231a8d2300 Homepage: http://wiki.debian.org/DebianScience/ Tag: field::biology, role::metapackage, suite::debian Section: science Priority: extra Filename: pool/main/d/debian-science/science-biology_1.4_all.deb Size: 11496 MD5sum: 934a233a64acd884aa51c4d37c29c5cb SHA1: eeb072018c533a88563320bb5694f8ab62c44672 SHA256: 3872561aaf7cabd3db6b1a2aa54fd109c702b61f53086099f0f00345700e5d3d 14m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'show', 'science-biology'] 14m20.9s INFO: apt-cache knows about the following packages: science-biology 14m20.9s INFO: Running scripts pre_install 14m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_database-server'] 14m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_database-server'] 14m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_exceptions'] 14m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_exceptions'] 14m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_extras'] 14m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_extras'] 14m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_foreign_architecture'] 14m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_foreign_architecture'] 14m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 14m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 14m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'policy'] 14m20.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ jessie/main Translation-en 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages release v=8.10,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 14m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'policy'] 14m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'policy', 'science-biology'] 14m21.0s DUMP: science-biology: Installed: 1.4 Candidate: 1.4 Version table: *** 1.4 0 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 14m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'policy', 'science-biology'] 14m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', '-y', 'install', 'science-biology'] 14m21.9s DUMP: Reading package lists... Building dependency tree... Reading state information... science-biology is already the newest version. The following packages were automatically installed and are no longer required: apache2.2-bin apache2.2-common dotur fftw2 gnustep-back0.20 gnustep-back0.20-art lesstif2 libb-hooks-endofscope-perl libbackport-util-concurrent-java libbctsp-java libboost-date-time1.49.0 libboost-filesystem1.49.0 libboost-iostreams1.49.0 libboost-program-options1.49.0 libboost-regex1.49.0 libboost-system1.49.0 libboost-thread1.49.0 libcdt4 libcgraph5 libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclass-tiny-perl libcommons-collections-java libcsiro0 libdevel-partialdump-perl libdist-checkconflicts-perl libdrm-nouveau1a libeval-closure-perl libexiv2-12 libfftw3-3 libfftw3-long3 libgcj-common libgcrypt11 libgd2-xpm libghemical-data libglew1.7 libgnujaf-java libgnustep-base1.22 libgnustep-gui0.20 libgnutls26 libgraph4 libgvpr1 libhdf4-0-alt libicu48 libint1 libjaxme-java libjson0 liblcms1 libmagickcore5 libmagickcore5-extra libmagickwand5 libmodule-runtime-conflicts-perl libmoose-perl libmopac7-1gf libmpc2 libnamespace-clean-perl liboglappth2 libopenbabel4 libopengl-perl libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libplplot11 libprocps0 libproj0 libpthread-stubs0 libqhull5 libqhull6 libqsastime0 librtmp0 libsc-data libsc7 libsub-identify-perl libswitch-perl libsystemd-login0 libtasn1-3 libtiff4 libtorque2 libts-0.0-0 libvariable-magic-perl libwxbase2.8-0 libwxgtk2.8-0 libxp6 mpqc pdl proj-data r-cran-reshape tsconf ttf-freefont ttf-liberation wwwconfig-common Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 14m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', '-y', 'install', 'science-biology'] 14m21.9s INFO: Running scripts post_install 14m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_install_exceptions'] 14m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_install_exceptions'] 14m21.9s INFO: Running scripts post_distupgrade 14m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_base_cleanup'] 14m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_base_cleanup'] 14m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_exceptions'] 14m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_exceptions'] 14m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_experimental'] 14m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_experimental'] 14m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 14m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 14m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_hack_debsums'] 14m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_hack_debsums'] 14m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_squeeze-backports'] 14m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_squeeze-backports'] 14m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_zz_backports'] 14m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_distupgrade_zz_backports'] 14m22.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 14m27.7s DUMP: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 5261 root cwd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 5261 root rtd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 5261 root txt REG 0,35 125400 274256161 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/bin/dash mysqld_sa 5261 root mem REG 0,35 1738176 274105126 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.19.so mysqld_sa 5261 root mem REG 0,35 140928 274105123 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.19.so mysqld_sa 5261 root 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 1w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 2w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 10r REG 0,35 27482 274384660 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/bin/mysqld_safe mysqld_sa 5261 root 11r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 12w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 13w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 5611 150 cwd DIR 0,35 180 273618851 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql mysqld 5611 150 rtd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld 5611 150 txt REG 0,35 11873232 274381581 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/sbin/mysqld mysqld 5611 150 mem REG 0,35 47712 274105135 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_files-2.19.so mysqld 5611 150 mem REG 0,35 43592 274105137 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_nis-2.19.so mysqld 5611 150 mem REG 0,35 31632 274105133 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_compat-2.19.so mysqld 5611 150 mem REG 0,35 89104 274105132 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnsl-2.19.so mysqld 5611 150 mem REG 0,35 1738176 274105126 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.19.so mysqld 5611 150 mem REG 0,35 90096 274130951 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 5611 150 mem REG 0,35 1051056 274105130 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libm-2.19.so mysqld 5611 150 mem REG 0,35 1008120 274112395 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.20 mysqld 5611 150 mem REG 0,35 14664 274105129 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libdl-2.19.so mysqld 5611 150 mem REG 0,35 35176 274105128 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libcrypt-2.19.so mysqld 5611 150 mem REG 0,35 40624 274294989 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 5611 150 mem REG 0,35 109144 274131029 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libz.so.1.2.8 mysqld 5611 150 mem REG 0,35 5544 274301029 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 5611 150 mem REG 0,35 137384 274105122 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libpthread-2.19.so mysqld 5611 150 mem REG 0,35 140928 274105123 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.19.so mysqld 5611 150 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 5611 150 1w REG 0,35 5418 275085046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/log/mysql/error.log mysqld 5611 150 2w REG 0,35 5418 275085046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/log/mysql/error.log mysqld 5611 150 4uW REG 0,35 18874368 273851815 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ibdata1 mysqld 5611 150 9uW REG 0,35 5242880 273851816 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile0 mysqld 5611 150 10uW REG 0,35 5242880 273851817 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile1 mysqld 5611 150 14u REG 0,35 35 273851726 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSM mysqld 5611 150 15r REG 0,35 0 273851727 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSV mysqld 5611 150 16u REG 0,35 2048 275093365 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYI mysqld 5611 150 17u REG 0,35 328 275093366 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYD mysqld 5611 150 18u REG 0,35 4096 275093317 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYI mysqld 5611 150 19u REG 0,35 844 275093318 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYD mysqld 5611 150 20u REG 0,35 5120 273851757 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYI mysqld 5611 150 21u REG 0,35 1386 273851758 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYD mysqld 5611 150 22u REG 0,35 2048 275093356 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYI mysqld 5611 150 23u REG 0,35 0 275093357 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYD mysqld 5611 150 24u REG 0,35 4096 275093183 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYI mysqld 5611 150 25u REG 0,35 0 275093184 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYD mysqld 5611 150 26u REG 0,35 4096 275093189 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYI mysqld 5611 150 27u REG 0,35 0 275093190 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYD mysqld 5611 150 28u REG 0,35 1024 273851684 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYI mysqld 5611 150 29u REG 0,35 0 273851685 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYD mysqld 5611 150 30u REG 0,35 4096 275093293 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYI mysqld 5611 150 31u REG 0,35 0 275093294 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYD mysqld 5611 150 33u REG 0,35 2048 275093353 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYI mysqld 5611 150 34u REG 0,35 0 275093354 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYD mysqld 5611 150 37u REG 0,35 3072 273851696 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYI mysqld 5611 150 38u REG 0,35 1120 273851697 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYD mysqld 5611 150 39u REG 0,35 19456 273851702 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYI mysqld 5611 150 40u REG 0,35 105986 273851703 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYD mysqld 5611 150 41u REG 0,35 22528 273851699 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYI mysqld 5611 150 42u REG 0,35 10476 273851700 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYD mysqld 5611 150 43u REG 0,35 19456 273851693 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYI mysqld 5611 150 44u REG 0,35 492348 273851694 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYD mysqld 5611 150 45u REG 0,35 1024 273851735 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 5611 150 46u REG 0,35 0 273851736 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 5611 150 47u REG 0,35 2048 275093347 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYI mysqld 5611 150 48u REG 0,35 0 275093348 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYD mysqld 5611 150 49u REG 0,35 1024 275093226 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYI mysqld 5611 150 50u REG 0,35 0 275093227 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYD mysqld 5611 150 51u REG 0,35 1024 275093233 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYI mysqld 5611 150 52u REG 0,35 0 275093234 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYD mysqld 5611 150 53u REG 0,35 1024 273851708 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYI mysqld 5611 150 54u REG 0,35 0 273851709 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYD mysqld 5611 150 55u REG 0,35 1024 273851717 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 5611 150 56u REG 0,35 0 273851718 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 5611 150 57u REG 0,35 1024 273851705 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYI mysqld 5611 150 58u REG 0,35 0 273851706 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYD mysqld 5611 150 59u REG 0,35 1024 273851711 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 5611 150 60u REG 0,35 0 273851712 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 5611 150 61u REG 0,35 1024 273851714 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 5611 150 62u REG 0,35 0 273851715 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 5611 150 63u REG 0,35 35 275093230 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSM mysqld 5611 150 64r REG 0,35 0 275093231 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSV 14m27.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 14m27.7s ERROR: WARN: Processes are running inside chroot: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 5261 root cwd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 5261 root rtd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 5261 root txt REG 0,35 125400 274256161 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/bin/dash mysqld_sa 5261 root mem REG 0,35 1738176 274105126 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.19.so mysqld_sa 5261 root mem REG 0,35 140928 274105123 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.19.so mysqld_sa 5261 root 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 1w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 2w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 10r REG 0,35 27482 274384660 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/bin/mysqld_safe mysqld_sa 5261 root 11r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 12w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 13w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 5611 150 cwd DIR 0,35 180 273618851 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql mysqld 5611 150 rtd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld 5611 150 txt REG 0,35 11873232 274381581 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/sbin/mysqld mysqld 5611 150 mem REG 0,35 47712 274105135 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_files-2.19.so mysqld 5611 150 mem REG 0,35 43592 274105137 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_nis-2.19.so mysqld 5611 150 mem REG 0,35 31632 274105133 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_compat-2.19.so mysqld 5611 150 mem REG 0,35 89104 274105132 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnsl-2.19.so mysqld 5611 150 mem REG 0,35 1738176 274105126 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.19.so mysqld 5611 150 mem REG 0,35 90096 274130951 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 5611 150 mem REG 0,35 1051056 274105130 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libm-2.19.so mysqld 5611 150 mem REG 0,35 1008120 274112395 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.20 mysqld 5611 150 mem REG 0,35 14664 274105129 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libdl-2.19.so mysqld 5611 150 mem REG 0,35 35176 274105128 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libcrypt-2.19.so mysqld 5611 150 mem REG 0,35 40624 274294989 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 5611 150 mem REG 0,35 109144 274131029 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libz.so.1.2.8 mysqld 5611 150 mem REG 0,35 5544 274301029 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 5611 150 mem REG 0,35 137384 274105122 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libpthread-2.19.so mysqld 5611 150 mem REG 0,35 140928 274105123 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.19.so mysqld 5611 150 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 5611 150 1w REG 0,35 5418 275085046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/log/mysql/error.log mysqld 5611 150 2w REG 0,35 5418 275085046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/log/mysql/error.log mysqld 5611 150 4uW REG 0,35 18874368 273851815 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ibdata1 mysqld 5611 150 9uW REG 0,35 5242880 273851816 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile0 mysqld 5611 150 10uW REG 0,35 5242880 273851817 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile1 mysqld 5611 150 14u REG 0,35 35 273851726 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSM mysqld 5611 150 15r REG 0,35 0 273851727 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSV mysqld 5611 150 16u REG 0,35 2048 275093365 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYI mysqld 5611 150 17u REG 0,35 328 275093366 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYD mysqld 5611 150 18u REG 0,35 4096 275093317 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYI mysqld 5611 150 19u REG 0,35 844 275093318 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYD mysqld 5611 150 20u REG 0,35 5120 273851757 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYI mysqld 5611 150 21u REG 0,35 1386 273851758 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYD mysqld 5611 150 22u REG 0,35 2048 275093356 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYI mysqld 5611 150 23u REG 0,35 0 275093357 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYD mysqld 5611 150 24u REG 0,35 4096 275093183 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYI mysqld 5611 150 25u REG 0,35 0 275093184 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYD mysqld 5611 150 26u REG 0,35 4096 275093189 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYI mysqld 5611 150 27u REG 0,35 0 275093190 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYD mysqld 5611 150 28u REG 0,35 1024 273851684 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYI mysqld 5611 150 29u REG 0,35 0 273851685 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYD mysqld 5611 150 30u REG 0,35 4096 275093293 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYI mysqld 5611 150 31u REG 0,35 0 275093294 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYD mysqld 5611 150 33u REG 0,35 2048 275093353 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYI mysqld 5611 150 34u REG 0,35 0 275093354 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYD mysqld 5611 150 37u REG 0,35 3072 273851696 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYI mysqld 5611 150 38u REG 0,35 1120 273851697 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYD mysqld 5611 150 39u REG 0,35 19456 273851702 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYI mysqld 5611 150 40u REG 0,35 105986 273851703 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYD mysqld 5611 150 41u REG 0,35 22528 273851699 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYI mysqld 5611 150 42u REG 0,35 10476 273851700 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYD mysqld 5611 150 43u REG 0,35 19456 273851693 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYI mysqld 5611 150 44u REG 0,35 492348 273851694 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYD mysqld 5611 150 45u REG 0,35 1024 273851735 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 5611 150 46u REG 0,35 0 273851736 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 5611 150 47u REG 0,35 2048 275093347 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYI mysqld 5611 150 48u REG 0,35 0 275093348 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYD mysqld 5611 150 49u REG 0,35 1024 275093226 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYI mysqld 5611 150 50u REG 0,35 0 275093227 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYD mysqld 5611 150 51u REG 0,35 1024 275093233 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYI mysqld 5611 150 52u REG 0,35 0 275093234 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYD mysqld 5611 150 53u REG 0,35 1024 273851708 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYI mysqld 5611 150 54u REG 0,35 0 273851709 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYD mysqld 5611 150 55u REG 0,35 1024 273851717 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 5611 150 56u REG 0,35 0 273851718 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 5611 150 57u REG 0,35 1024 273851705 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYI mysqld 5611 150 58u REG 0,35 0 273851706 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYD mysqld 5611 150 59u REG 0,35 1024 273851711 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 5611 150 60u REG 0,35 0 273851712 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 5611 150 61u REG 0,35 1024 273851714 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 5611 150 62u REG 0,35 0 273851715 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 5611 150 63u REG 0,35 35 275093230 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSM mysqld 5611 150 64r REG 0,35 0 275093231 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSV 14m27.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 14m33.0s DUMP: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 5261 root cwd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 5261 root rtd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 5261 root txt REG 0,35 125400 274256161 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/bin/dash mysqld_sa 5261 root mem REG 0,35 1738176 274105126 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.19.so mysqld_sa 5261 root mem REG 0,35 140928 274105123 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.19.so mysqld_sa 5261 root 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 1w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 2w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 10r REG 0,35 27482 274384660 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/bin/mysqld_safe mysqld_sa 5261 root 11r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 12w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 13w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 5611 150 cwd DIR 0,35 180 273618851 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql mysqld 5611 150 rtd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld 5611 150 txt REG 0,35 11873232 274381581 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/sbin/mysqld mysqld 5611 150 mem REG 0,35 47712 274105135 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_files-2.19.so mysqld 5611 150 mem REG 0,35 43592 274105137 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_nis-2.19.so mysqld 5611 150 mem REG 0,35 31632 274105133 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_compat-2.19.so mysqld 5611 150 mem REG 0,35 89104 274105132 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnsl-2.19.so mysqld 5611 150 mem REG 0,35 1738176 274105126 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.19.so mysqld 5611 150 mem REG 0,35 90096 274130951 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 5611 150 mem REG 0,35 1051056 274105130 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libm-2.19.so mysqld 5611 150 mem REG 0,35 1008120 274112395 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.20 mysqld 5611 150 mem REG 0,35 14664 274105129 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libdl-2.19.so mysqld 5611 150 mem REG 0,35 35176 274105128 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libcrypt-2.19.so mysqld 5611 150 mem REG 0,35 40624 274294989 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 5611 150 mem REG 0,35 109144 274131029 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libz.so.1.2.8 mysqld 5611 150 mem REG 0,35 5544 274301029 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 5611 150 mem REG 0,35 137384 274105122 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libpthread-2.19.so mysqld 5611 150 mem REG 0,35 140928 274105123 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.19.so mysqld 5611 150 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 5611 150 1w REG 0,35 5418 275085046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/log/mysql/error.log mysqld 5611 150 2w REG 0,35 5418 275085046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/log/mysql/error.log mysqld 5611 150 4uW REG 0,35 18874368 273851815 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ibdata1 mysqld 5611 150 9uW REG 0,35 5242880 273851816 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile0 mysqld 5611 150 10uW REG 0,35 5242880 273851817 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile1 mysqld 5611 150 14u REG 0,35 35 273851726 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSM mysqld 5611 150 15r REG 0,35 0 273851727 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSV mysqld 5611 150 16u REG 0,35 2048 275093365 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYI mysqld 5611 150 17u REG 0,35 328 275093366 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYD mysqld 5611 150 18u REG 0,35 4096 275093317 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYI mysqld 5611 150 19u REG 0,35 844 275093318 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYD mysqld 5611 150 20u REG 0,35 5120 273851757 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYI mysqld 5611 150 21u REG 0,35 1386 273851758 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYD mysqld 5611 150 22u REG 0,35 2048 275093356 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYI mysqld 5611 150 23u REG 0,35 0 275093357 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYD mysqld 5611 150 24u REG 0,35 4096 275093183 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYI mysqld 5611 150 25u REG 0,35 0 275093184 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYD mysqld 5611 150 26u REG 0,35 4096 275093189 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYI mysqld 5611 150 27u REG 0,35 0 275093190 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYD mysqld 5611 150 28u REG 0,35 1024 273851684 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYI mysqld 5611 150 29u REG 0,35 0 273851685 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYD mysqld 5611 150 30u REG 0,35 4096 275093293 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYI mysqld 5611 150 31u REG 0,35 0 275093294 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYD mysqld 5611 150 33u REG 0,35 2048 275093353 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYI mysqld 5611 150 34u REG 0,35 0 275093354 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYD mysqld 5611 150 37u REG 0,35 3072 273851696 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYI mysqld 5611 150 38u REG 0,35 1120 273851697 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYD mysqld 5611 150 39u REG 0,35 19456 273851702 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYI mysqld 5611 150 40u REG 0,35 105986 273851703 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYD mysqld 5611 150 41u REG 0,35 22528 273851699 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYI mysqld 5611 150 42u REG 0,35 10476 273851700 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYD mysqld 5611 150 43u REG 0,35 19456 273851693 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYI mysqld 5611 150 44u REG 0,35 492348 273851694 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYD mysqld 5611 150 45u REG 0,35 1024 273851735 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 5611 150 46u REG 0,35 0 273851736 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 5611 150 47u REG 0,35 2048 275093347 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYI mysqld 5611 150 48u REG 0,35 0 275093348 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYD mysqld 5611 150 49u REG 0,35 1024 275093226 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYI mysqld 5611 150 50u REG 0,35 0 275093227 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYD mysqld 5611 150 51u REG 0,35 1024 275093233 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYI mysqld 5611 150 52u REG 0,35 0 275093234 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYD mysqld 5611 150 53u REG 0,35 1024 273851708 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYI mysqld 5611 150 54u REG 0,35 0 273851709 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYD mysqld 5611 150 55u REG 0,35 1024 273851717 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 5611 150 56u REG 0,35 0 273851718 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 5611 150 57u REG 0,35 1024 273851705 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYI mysqld 5611 150 58u REG 0,35 0 273851706 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYD mysqld 5611 150 59u REG 0,35 1024 273851711 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 5611 150 60u REG 0,35 0 273851712 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 5611 150 61u REG 0,35 1024 273851714 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 5611 150 62u REG 0,35 0 273851715 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 5611 150 63u REG 0,35 35 275093230 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSM mysqld 5611 150 64r REG 0,35 0 275093231 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSV 14m33.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 14m33.0s ERROR: WARN: Processes are running inside chroot: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 5261 root cwd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 5261 root rtd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 5261 root txt REG 0,35 125400 274256161 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/bin/dash mysqld_sa 5261 root mem REG 0,35 1738176 274105126 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.19.so mysqld_sa 5261 root mem REG 0,35 140928 274105123 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.19.so mysqld_sa 5261 root 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 1w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 2w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 10r REG 0,35 27482 274384660 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/bin/mysqld_safe mysqld_sa 5261 root 11r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 12w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 13w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 5611 150 cwd DIR 0,35 180 273618851 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql mysqld 5611 150 rtd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld 5611 150 txt REG 0,35 11873232 274381581 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/sbin/mysqld mysqld 5611 150 mem REG 0,35 47712 274105135 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_files-2.19.so mysqld 5611 150 mem REG 0,35 43592 274105137 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_nis-2.19.so mysqld 5611 150 mem REG 0,35 31632 274105133 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_compat-2.19.so mysqld 5611 150 mem REG 0,35 89104 274105132 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnsl-2.19.so mysqld 5611 150 mem REG 0,35 1738176 274105126 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.19.so mysqld 5611 150 mem REG 0,35 90096 274130951 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 5611 150 mem REG 0,35 1051056 274105130 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libm-2.19.so mysqld 5611 150 mem REG 0,35 1008120 274112395 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.20 mysqld 5611 150 mem REG 0,35 14664 274105129 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libdl-2.19.so mysqld 5611 150 mem REG 0,35 35176 274105128 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libcrypt-2.19.so mysqld 5611 150 mem REG 0,35 40624 274294989 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 5611 150 mem REG 0,35 109144 274131029 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libz.so.1.2.8 mysqld 5611 150 mem REG 0,35 5544 274301029 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 5611 150 mem REG 0,35 137384 274105122 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libpthread-2.19.so mysqld 5611 150 mem REG 0,35 140928 274105123 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.19.so mysqld 5611 150 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 5611 150 1w REG 0,35 5418 275085046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/log/mysql/error.log mysqld 5611 150 2w REG 0,35 5418 275085046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/log/mysql/error.log mysqld 5611 150 4uW REG 0,35 18874368 273851815 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ibdata1 mysqld 5611 150 9uW REG 0,35 5242880 273851816 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile0 mysqld 5611 150 10uW REG 0,35 5242880 273851817 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile1 mysqld 5611 150 14u REG 0,35 35 273851726 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSM mysqld 5611 150 15r REG 0,35 0 273851727 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSV mysqld 5611 150 16u REG 0,35 2048 275093365 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYI mysqld 5611 150 17u REG 0,35 328 275093366 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYD mysqld 5611 150 18u REG 0,35 4096 275093317 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYI mysqld 5611 150 19u REG 0,35 844 275093318 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYD mysqld 5611 150 20u REG 0,35 5120 273851757 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYI mysqld 5611 150 21u REG 0,35 1386 273851758 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYD mysqld 5611 150 22u REG 0,35 2048 275093356 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYI mysqld 5611 150 23u REG 0,35 0 275093357 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYD mysqld 5611 150 24u REG 0,35 4096 275093183 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYI mysqld 5611 150 25u REG 0,35 0 275093184 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYD mysqld 5611 150 26u REG 0,35 4096 275093189 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYI mysqld 5611 150 27u REG 0,35 0 275093190 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYD mysqld 5611 150 28u REG 0,35 1024 273851684 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYI mysqld 5611 150 29u REG 0,35 0 273851685 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYD mysqld 5611 150 30u REG 0,35 4096 275093293 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYI mysqld 5611 150 31u REG 0,35 0 275093294 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYD mysqld 5611 150 33u REG 0,35 2048 275093353 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYI mysqld 5611 150 34u REG 0,35 0 275093354 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYD mysqld 5611 150 37u REG 0,35 3072 273851696 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYI mysqld 5611 150 38u REG 0,35 1120 273851697 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYD mysqld 5611 150 39u REG 0,35 19456 273851702 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYI mysqld 5611 150 40u REG 0,35 105986 273851703 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYD mysqld 5611 150 41u REG 0,35 22528 273851699 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYI mysqld 5611 150 42u REG 0,35 10476 273851700 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYD mysqld 5611 150 43u REG 0,35 19456 273851693 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYI mysqld 5611 150 44u REG 0,35 492348 273851694 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYD mysqld 5611 150 45u REG 0,35 1024 273851735 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 5611 150 46u REG 0,35 0 273851736 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 5611 150 47u REG 0,35 2048 275093347 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYI mysqld 5611 150 48u REG 0,35 0 275093348 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYD mysqld 5611 150 49u REG 0,35 1024 275093226 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYI mysqld 5611 150 50u REG 0,35 0 275093227 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYD mysqld 5611 150 51u REG 0,35 1024 275093233 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYI mysqld 5611 150 52u REG 0,35 0 275093234 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYD mysqld 5611 150 53u REG 0,35 1024 273851708 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYI mysqld 5611 150 54u REG 0,35 0 273851709 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYD mysqld 5611 150 55u REG 0,35 1024 273851717 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 5611 150 56u REG 0,35 0 273851718 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 5611 150 57u REG 0,35 1024 273851705 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYI mysqld 5611 150 58u REG 0,35 0 273851706 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYD mysqld 5611 150 59u REG 0,35 1024 273851711 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 5611 150 60u REG 0,35 0 273851712 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 5611 150 61u REG 0,35 1024 273851714 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 5611 150 62u REG 0,35 0 273851715 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 5611 150 63u REG 0,35 35 275093230 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSM mysqld 5611 150 64r REG 0,35 0 275093231 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSV 14m33.0s INFO: Running scripts pre_install 14m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_database-server'] 14m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_database-server'] 14m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_exceptions'] 14m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_exceptions'] 14m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_extras'] 14m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_extras'] 14m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_foreign_architecture'] 14m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_foreign_architecture'] 14m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 14m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 14m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'policy'] 14m33.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ jessie/main Translation-en 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages release v=8.10,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 14m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'policy'] 14m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'policy', 'science-biology'] 14m33.1s DUMP: science-biology: Installed: 1.4 Candidate: 1.4 Version table: *** 1.4 0 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 14m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-cache', 'policy', 'science-biology'] 14m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', '-y', 'install', 'science-biology=1.4'] 14m33.7s DUMP: Reading package lists... Building dependency tree... Reading state information... science-biology is already the newest version. The following packages were automatically installed and are no longer required: apache2.2-bin apache2.2-common dotur fftw2 gnustep-back0.20 gnustep-back0.20-art lesstif2 libb-hooks-endofscope-perl libbackport-util-concurrent-java libbctsp-java libboost-date-time1.49.0 libboost-filesystem1.49.0 libboost-iostreams1.49.0 libboost-program-options1.49.0 libboost-regex1.49.0 libboost-system1.49.0 libboost-thread1.49.0 libcdt4 libcgraph5 libclass-isa-perl libclass-load-perl libclass-load-xs-perl libclass-tiny-perl libcommons-collections-java libcsiro0 libdevel-partialdump-perl libdist-checkconflicts-perl libdrm-nouveau1a libeval-closure-perl libexiv2-12 libfftw3-3 libfftw3-long3 libgcj-common libgcrypt11 libgd2-xpm libghemical-data libglew1.7 libgnujaf-java libgnustep-base1.22 libgnustep-gui0.20 libgnutls26 libgraph4 libgvpr1 libhdf4-0-alt libicu48 libint1 libjaxme-java libjson0 liblcms1 libmagickcore5 libmagickcore5-extra libmagickwand5 libmodule-runtime-conflicts-perl libmoose-perl libmopac7-1gf libmpc2 libnamespace-clean-perl liboglappth2 libopenbabel4 libopengl-perl libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libplplot11 libprocps0 libproj0 libpthread-stubs0 libqhull5 libqhull6 libqsastime0 librtmp0 libsc-data libsc7 libsub-identify-perl libswitch-perl libsystemd-login0 libtasn1-3 libtiff4 libtorque2 libts-0.0-0 libvariable-magic-perl libwxbase2.8-0 libwxgtk2.8-0 libxp6 mpqc pdl proj-data r-cran-reshape tsconf ttf-freefont ttf-liberation wwwconfig-common Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 14m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', '-y', 'install', 'science-biology=1.4'] 14m33.7s INFO: Running scripts post_install 14m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_install_exceptions'] 14m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_install_exceptions'] 14m33.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 14m38.9s DUMP: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 5261 root cwd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 5261 root rtd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 5261 root txt REG 0,35 125400 274256161 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/bin/dash mysqld_sa 5261 root mem REG 0,35 1738176 274105126 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.19.so mysqld_sa 5261 root mem REG 0,35 140928 274105123 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.19.so mysqld_sa 5261 root 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 1w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 2w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 10r REG 0,35 27482 274384660 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/bin/mysqld_safe mysqld_sa 5261 root 11r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 12w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 13w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 5611 150 cwd DIR 0,35 180 273618851 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql mysqld 5611 150 rtd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld 5611 150 txt REG 0,35 11873232 274381581 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/sbin/mysqld mysqld 5611 150 mem REG 0,35 47712 274105135 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_files-2.19.so mysqld 5611 150 mem REG 0,35 43592 274105137 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_nis-2.19.so mysqld 5611 150 mem REG 0,35 31632 274105133 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_compat-2.19.so mysqld 5611 150 mem REG 0,35 89104 274105132 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnsl-2.19.so mysqld 5611 150 mem REG 0,35 1738176 274105126 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.19.so mysqld 5611 150 mem REG 0,35 90096 274130951 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 5611 150 mem REG 0,35 1051056 274105130 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libm-2.19.so mysqld 5611 150 mem REG 0,35 1008120 274112395 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.20 mysqld 5611 150 mem REG 0,35 14664 274105129 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libdl-2.19.so mysqld 5611 150 mem REG 0,35 35176 274105128 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libcrypt-2.19.so mysqld 5611 150 mem REG 0,35 40624 274294989 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 5611 150 mem REG 0,35 109144 274131029 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libz.so.1.2.8 mysqld 5611 150 mem REG 0,35 5544 274301029 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 5611 150 mem REG 0,35 137384 274105122 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libpthread-2.19.so mysqld 5611 150 mem REG 0,35 140928 274105123 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.19.so mysqld 5611 150 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 5611 150 1w REG 0,35 5418 275085046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/log/mysql/error.log mysqld 5611 150 2w REG 0,35 5418 275085046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/log/mysql/error.log mysqld 5611 150 4uW REG 0,35 18874368 273851815 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ibdata1 mysqld 5611 150 9uW REG 0,35 5242880 273851816 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile0 mysqld 5611 150 10uW REG 0,35 5242880 273851817 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile1 mysqld 5611 150 14u REG 0,35 35 273851726 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSM mysqld 5611 150 15r REG 0,35 0 273851727 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSV mysqld 5611 150 16u REG 0,35 2048 275093365 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYI mysqld 5611 150 17u REG 0,35 328 275093366 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYD mysqld 5611 150 18u REG 0,35 4096 275093317 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYI mysqld 5611 150 19u REG 0,35 844 275093318 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYD mysqld 5611 150 20u REG 0,35 5120 273851757 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYI mysqld 5611 150 21u REG 0,35 1386 273851758 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYD mysqld 5611 150 22u REG 0,35 2048 275093356 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYI mysqld 5611 150 23u REG 0,35 0 275093357 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYD mysqld 5611 150 24u REG 0,35 4096 275093183 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYI mysqld 5611 150 25u REG 0,35 0 275093184 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYD mysqld 5611 150 26u REG 0,35 4096 275093189 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYI mysqld 5611 150 27u REG 0,35 0 275093190 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYD mysqld 5611 150 28u REG 0,35 1024 273851684 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYI mysqld 5611 150 29u REG 0,35 0 273851685 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYD mysqld 5611 150 30u REG 0,35 4096 275093293 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYI mysqld 5611 150 31u REG 0,35 0 275093294 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYD mysqld 5611 150 33u REG 0,35 2048 275093353 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYI mysqld 5611 150 34u REG 0,35 0 275093354 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYD mysqld 5611 150 37u REG 0,35 3072 273851696 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYI mysqld 5611 150 38u REG 0,35 1120 273851697 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYD mysqld 5611 150 39u REG 0,35 19456 273851702 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYI mysqld 5611 150 40u REG 0,35 105986 273851703 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYD mysqld 5611 150 41u REG 0,35 22528 273851699 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYI mysqld 5611 150 42u REG 0,35 10476 273851700 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYD mysqld 5611 150 43u REG 0,35 19456 273851693 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYI mysqld 5611 150 44u REG 0,35 492348 273851694 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYD mysqld 5611 150 45u REG 0,35 1024 273851735 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 5611 150 46u REG 0,35 0 273851736 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 5611 150 47u REG 0,35 2048 275093347 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYI mysqld 5611 150 48u REG 0,35 0 275093348 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYD mysqld 5611 150 49u REG 0,35 1024 275093226 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYI mysqld 5611 150 50u REG 0,35 0 275093227 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYD mysqld 5611 150 51u REG 0,35 1024 275093233 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYI mysqld 5611 150 52u REG 0,35 0 275093234 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYD mysqld 5611 150 53u REG 0,35 1024 273851708 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYI mysqld 5611 150 54u REG 0,35 0 273851709 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYD mysqld 5611 150 55u REG 0,35 1024 273851717 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 5611 150 56u REG 0,35 0 273851718 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 5611 150 57u REG 0,35 1024 273851705 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYI mysqld 5611 150 58u REG 0,35 0 273851706 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYD mysqld 5611 150 59u REG 0,35 1024 273851711 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 5611 150 60u REG 0,35 0 273851712 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 5611 150 61u REG 0,35 1024 273851714 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 5611 150 62u REG 0,35 0 273851715 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 5611 150 63u REG 0,35 35 275093230 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSM mysqld 5611 150 64r REG 0,35 0 275093231 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSV 14m38.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 14m38.9s ERROR: WARN: Processes are running inside chroot: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 5261 root cwd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 5261 root rtd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld_sa 5261 root txt REG 0,35 125400 274256161 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/bin/dash mysqld_sa 5261 root mem REG 0,35 1738176 274105126 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.19.so mysqld_sa 5261 root mem REG 0,35 140928 274105123 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.19.so mysqld_sa 5261 root 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 1w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 2w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 10r REG 0,35 27482 274384660 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/bin/mysqld_safe mysqld_sa 5261 root 11r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 12w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld_sa 5261 root 13w CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 5611 150 cwd DIR 0,35 180 273618851 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql mysqld 5611 150 rtd DIR 0,35 460 273509976 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t mysqld 5611 150 txt REG 0,35 11873232 274381581 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/sbin/mysqld mysqld 5611 150 mem REG 0,35 47712 274105135 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_files-2.19.so mysqld 5611 150 mem REG 0,35 43592 274105137 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_nis-2.19.so mysqld 5611 150 mem REG 0,35 31632 274105133 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnss_compat-2.19.so mysqld 5611 150 mem REG 0,35 89104 274105132 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libnsl-2.19.so mysqld 5611 150 mem REG 0,35 1738176 274105126 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libc-2.19.so mysqld 5611 150 mem REG 0,35 90096 274130951 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 5611 150 mem REG 0,35 1051056 274105130 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libm-2.19.so mysqld 5611 150 mem REG 0,35 1008120 274112395 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.20 mysqld 5611 150 mem REG 0,35 14664 274105129 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libdl-2.19.so mysqld 5611 150 mem REG 0,35 35176 274105128 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libcrypt-2.19.so mysqld 5611 150 mem REG 0,35 40624 274294989 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 5611 150 mem REG 0,35 109144 274131029 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libz.so.1.2.8 mysqld 5611 150 mem REG 0,35 5544 274301029 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 5611 150 mem REG 0,35 137384 274105122 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/libpthread-2.19.so mysqld 5611 150 mem REG 0,35 140928 274105123 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/lib/x86_64-linux-gnu/ld-2.19.so mysqld 5611 150 0r CHR 1,3 0t0 273510050 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/dev/null mysqld 5611 150 1w REG 0,35 5418 275085046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/log/mysql/error.log mysqld 5611 150 2w REG 0,35 5418 275085046 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/log/mysql/error.log mysqld 5611 150 4uW REG 0,35 18874368 273851815 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ibdata1 mysqld 5611 150 9uW REG 0,35 5242880 273851816 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile0 mysqld 5611 150 10uW REG 0,35 5242880 273851817 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/ib_logfile1 mysqld 5611 150 14u REG 0,35 35 273851726 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSM mysqld 5611 150 15r REG 0,35 0 273851727 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/general_log.CSV mysqld 5611 150 16u REG 0,35 2048 275093365 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYI mysqld 5611 150 17u REG 0,35 328 275093366 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/user.MYD mysqld 5611 150 18u REG 0,35 4096 275093317 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYI mysqld 5611 150 19u REG 0,35 844 275093318 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proc.MYD mysqld 5611 150 20u REG 0,35 5120 273851757 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYI mysqld 5611 150 21u REG 0,35 1386 273851758 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/proxies_priv.MYD mysqld 5611 150 22u REG 0,35 2048 275093356 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYI mysqld 5611 150 23u REG 0,35 0 275093357 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/db.MYD mysqld 5611 150 24u REG 0,35 4096 275093183 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYI mysqld 5611 150 25u REG 0,35 0 275093184 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/tables_priv.MYD mysqld 5611 150 26u REG 0,35 4096 275093189 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYI mysqld 5611 150 27u REG 0,35 0 275093190 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/columns_priv.MYD mysqld 5611 150 28u REG 0,35 1024 273851684 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYI mysqld 5611 150 29u REG 0,35 0 273851685 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/servers.MYD mysqld 5611 150 30u REG 0,35 4096 275093293 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYI mysqld 5611 150 31u REG 0,35 0 275093294 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/procs_priv.MYD mysqld 5611 150 33u REG 0,35 2048 275093353 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYI mysqld 5611 150 34u REG 0,35 0 275093354 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/host.MYD mysqld 5611 150 37u REG 0,35 3072 273851696 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYI mysqld 5611 150 38u REG 0,35 1120 273851697 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_category.MYD mysqld 5611 150 39u REG 0,35 19456 273851702 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYI mysqld 5611 150 40u REG 0,35 105986 273851703 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_keyword.MYD mysqld 5611 150 41u REG 0,35 22528 273851699 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYI mysqld 5611 150 42u REG 0,35 10476 273851700 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_relation.MYD mysqld 5611 150 43u REG 0,35 19456 273851693 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYI mysqld 5611 150 44u REG 0,35 492348 273851694 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/help_topic.MYD mysqld 5611 150 45u REG 0,35 1024 273851735 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 5611 150 46u REG 0,35 0 273851736 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 5611 150 47u REG 0,35 2048 275093347 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYI mysqld 5611 150 48u REG 0,35 0 275093348 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/event.MYD mysqld 5611 150 49u REG 0,35 1024 275093226 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYI mysqld 5611 150 50u REG 0,35 0 275093227 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/func.MYD mysqld 5611 150 51u REG 0,35 1024 275093233 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYI mysqld 5611 150 52u REG 0,35 0 275093234 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/plugin.MYD mysqld 5611 150 53u REG 0,35 1024 273851708 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYI mysqld 5611 150 54u REG 0,35 0 273851709 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone.MYD mysqld 5611 150 55u REG 0,35 1024 273851717 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 5611 150 56u REG 0,35 0 273851718 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 5611 150 57u REG 0,35 1024 273851705 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYI mysqld 5611 150 58u REG 0,35 0 273851706 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_name.MYD mysqld 5611 150 59u REG 0,35 1024 273851711 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 5611 150 60u REG 0,35 0 273851712 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 5611 150 61u REG 0,35 1024 273851714 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 5611 150 62u REG 0,35 0 273851715 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 5611 150 63u REG 0,35 35 275093230 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSM mysqld 5611 150 64r REG 0,35 0 275093231 /srv/piuparts.debian.org/../piuparts-workspace/tmpbk5I5t/var/lib/mysql/mysql/slow_log.CSV 14m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 14m39.6s DUMP: install ok installed abacas abacas 1.3.1-2 install ok installed acedb-other acedb-other 4.9.39+dfsg.01-5 install ok installed acedb-other-belvu acedb-other-belvu 4.9.39+dfsg.01-5 install ok installed acedb-other-dotter acedb-other-dotter 4.9.39+dfsg.01-5 install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed adun.app adun.app 0.81-6+b1 install ok installed adwaita-icon-theme adwaita-icon-theme 3.14.0-2 install ok installed aevol aevol 4.4-1 install ok installed aglfn aglfn 1.7-3 install ok installed alien-hunter alien-hunter 1.7-3 install ok installed altree altree 1.3.1-2+b1 install ok installed amap-align amap-align 2.2-4 install ok installed ampliconnoise ampliconnoise 1.29-2 install ok installed anfo anfo 0.98-4+b1 install ok installed ant ant 1.9.4-3 install ok installed ant-contrib ant-contrib 1.0~b3+svn177-6 install ok installed ant-optional ant-optional 1.9.4-3 install ok installed apache2 apache2 2.4.10-10+deb8u11 install ok installed apache2-bin apache2-bin 2.4.10-10+deb8u11 install ok installed apache2-data apache2-data 2.4.10-10+deb8u11 install ok installed apache2-mpm-worker apache2-mpm-worker 2.4.10-10+deb8u11 install ok installed apache2-utils apache2-utils 2.4.10-10+deb8u11 install ok installed apache2.2-bin apache2.2-bin 2.4.10-10+deb8u11 install ok installed apache2.2-common apache2.2-common 2.4.10-10+deb8u11 install ok installed apbs apbs 1.4-1 install ok installed apt apt 1.0.9.8.4 install ok installed aragorn aragorn 1.2.36-4 install ok installed arden arden 1.0-1 install ok installed aspell aspell 0.60.7~20110707-1.3 install ok installed aspell-en aspell-en 7.1-0-1.1 install ok installed at-spi2-core at-spi2-core 2.14.0-1 install ok installed autodock autodock 4.2.6-2 install ok installed autodock-vina autodock-vina 1.1.2-3+b1 install ok installed autogrid autogrid 4.2.6-2 install ok installed autopoint autopoint 0.19.3-2 install ok installed autotools-dev autotools-dev 20140911.1 install ok installed ballview ballview 1.4.2+20140406-1+b2 install ok installed bamtools bamtools 2.3.0+dfsg-2 install ok installed base-files base-files 8+deb8u10 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bauble bauble 0.9.7-2 install ok installed bc bc 1.06.95-9 install ok installed bedtools bedtools 2.21.0-1 install ok installed binfmt-support binfmt-support 2.1.5-1 install ok installed binutils binutils 2.25-5+deb8u1 install ok installed biomaj biomaj 1.2.3-4 install ok installed bioperl bioperl 1.6.924-1 install ok installed bioperl-run bioperl-run 1.6.9-2 install ok installed biosquid biosquid 1.9g+cvs20050121-4 install ok installed blast2 blast2 1:2.2.26.20120620-8 install ok installed blcr-util blcr-util 0.8.5-2.2 install ok installed blends-common blends-common 0.6.92.2 install ok installed blt blt 2.5.3+dfsg-1 install ok installed bowtie bowtie 1.1.1-2 install ok installed bowtie2 bowtie2 2.2.4-1 install ok installed boxshade boxshade 3.3.1-8 install ok installed bsdmainutils bsdmainutils 9.0.6 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed build-essential build-essential 11.7 install ok installed bwa bwa 0.7.10-1 install ok installed bzip2 bzip2 1.0.6-7+b3 install ok installed bzip2-doc bzip2-doc 1.0.6-7 install ok installed ca-certificates ca-certificates 20141019+deb8u3 install ok installed ca-certificates-java ca-certificates-java 20140324 install ok installed cassiopee cassiopee 1.0.1+dfsg-3+b1 install ok installed cd-hit cd-hit 4.6.1-2012-08-27-2 install ok installed cdbfasta cdbfasta 0.99-20100722-1 install ok installed cdbs cdbs 0.4.130+deb8u1 install ok installed cgmanager cgmanager 0.33-2+deb8u2 install ok installed chimeraslayer chimeraslayer 20101212+dfsg-1 install ok installed circos circos 0.66-1 install ok installed circos-tools circos-tools 0.18-1 install ok installed clearcut clearcut 1.0.9-1 install ok installed clonalframe clonalframe 1.2-3 install ok installed clustalo clustalo 1.2.1-1 install ok installed clustalw clustalw 2.1+lgpl-4 install ok installed clustalx clustalx 2.1+lgpl-3 install ok installed colord colord 1.2.1-1+b2 install ok installed colord-data colord-data 1.2.1-1 install ok installed concavity concavity 0.1-2 install ok installed conservation-code conservation-code 20110309.0-3 install ok installed coreutils coreutils 8.23-4 install ok installed cpp cpp 4:4.9.2-2 install ok installed cpp-4.9 cpp-4.9 4.9.2-10 install ok installed critterding critterding 1.0-beta12.1-1.2 install ok installed curl curl 7.38.0-4+deb8u8 install ok installed cython cython 0.21.1-1 install ok installed dash dash 0.5.7-4+b1 install ok installed dbus dbus 1.8.22-0+deb8u1 install ok installed dbus-x11 dbus-x11 1.8.22-0+deb8u1 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.22.0-1 install ok installed dconf-service dconf-service 0.22.0-1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debhelper debhelper 9.20150101+deb8u2 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed default-jre default-jre 2:1.7-52 install ok installed default-jre-headless default-jre-headless 2:1.7-52 install ok installed dh-python dh-python 1.20141111-2 install ok installed dialign dialign 2.2.1-7 install ok installed dialign-tx dialign-tx 1.0.2-7 install ok installed dialign-tx-data dialign-tx-data 1.0.2-7 install ok installed dictionaries-common dictionaries-common 1.23.17 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed discosnp discosnp 1.2.5-1 install ok installed disulfinder disulfinder 1.2.11-4 install ok installed disulfinder-data disulfinder-data 1.2.11-4 install ok installed dmidecode dmidecode 2.12-3 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dnaclust dnaclust 3-2+b1 install ok installed docutils-common docutils-common 0.12+dfsg-1 install ok installed docutils-doc docutils-doc 0.12+dfsg-1 install ok installed dotur dotur 1.53-2 install ok installed dpkg dpkg 1.17.27 install ok installed dpkg-dev dpkg-dev 1.17.27 install ok installed dssp dssp 2.2.1-2+b1 install ok installed dvipng dvipng 1.14-2+b1 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed edtsurf edtsurf 0.2009-3 install ok installed emacsen-common emacsen-common 2.0.8 install ok installed embassy-domainatrix embassy-domainatrix 0.1.650-1 install ok installed embassy-domalign embassy-domalign 0.1.650-1 install ok installed embassy-domsearch embassy-domsearch 1:0.1.650-1 install ok installed emboss emboss 6.6.0+dfsg-1 install ok installed emboss-data emboss-data 6.6.0+dfsg-1 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-1 install ok installed exonerate exonerate 2.2.0-6 install ok installed fakeroot fakeroot 1.20.2-1 install ok installed fastaq fastaq 1.5.0-1 install ok installed fastdnaml fastdnaml 1.2.2-10 install ok installed fastjar fastjar 2:0.98-5 install ok installed fastlink fastlink 4.1P-fix95-3 install ok installed fastqc fastqc 0.11.2+dfsg-3 install ok installed fasttree fasttree 2.1.7-2 install ok installed fastx-toolkit fastx-toolkit 0.0.14-1 install ok installed ffindex ffindex 0.9.9.3-2 install ok installed fftw2 fftw2 2.1.5-1+b1 install ok installed figtree figtree 1.4-2 install ok installed file file 1:5.22+15-2+deb8u3 install ok installed filo filo 1.1+2011123001.1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fitgcp fitgcp 0.0.20130418-2 install ok installed flexbar flexbar 2.50-1 install ok installed fontconfig fontconfig 2.11.0-6.3+deb8u1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-cabin fonts-cabin 1.5-2 install ok installed fonts-circos-symbols fonts-circos-symbols 0.66-1 install ok installed fonts-cmu fonts-cmu 0.7.0-3 install ok installed fonts-comfortaa fonts-comfortaa 2.003-1 install ok installed fonts-crosextra-caladea fonts-crosextra-caladea 20130214-1 install ok installed fonts-crosextra-carlito fonts-crosextra-carlito 20130920-1 install ok installed fonts-dejavu fonts-dejavu 2.34-1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.34-1 install ok installed fonts-droid fonts-droid 1:4.4.4r2-6 install ok installed fonts-ebgaramond fonts-ebgaramond 0.015+git20130628-3 install ok installed fonts-ebgaramond-extra fonts-ebgaramond-extra 0.015+git20130628-3 install ok installed fonts-font-awesome fonts-font-awesome 4.2.0~dfsg-1 install ok installed fonts-freefont-otf fonts-freefont-otf 20120503-4 install ok installed fonts-freefont-ttf fonts-freefont-ttf 20120503-4 install ok installed fonts-gfs-artemisia fonts-gfs-artemisia 1.1-5 install ok installed fonts-gfs-complutum fonts-gfs-complutum 1.1-6 install ok installed fonts-gfs-didot fonts-gfs-didot 1.1-6 install ok installed fonts-gfs-neohellenic fonts-gfs-neohellenic 1.1-6 install ok installed fonts-gfs-olga fonts-gfs-olga 1.1-5 install ok installed fonts-gfs-solomos fonts-gfs-solomos 1.1-5 install ok installed fonts-inconsolata fonts-inconsolata 001.010-5 install ok installed fonts-junicode fonts-junicode 0.7.8-2 install ok installed fonts-lato fonts-lato 2.0-1 install ok installed fonts-liberation fonts-liberation 1.07.4-1 install ok installed fonts-linuxlibertine fonts-linuxlibertine 5.3.0-2 install ok installed fonts-lmodern fonts-lmodern 2.004.4-5 install ok installed fonts-lobster fonts-lobster 2.0-2 install ok installed fonts-lobstertwo fonts-lobstertwo 2.0-2 install ok installed fonts-lyx fonts-lyx 2.1.2-2 install ok installed fonts-oflb-asana-math fonts-oflb-asana-math 000.907-6 install ok installed fonts-sil-gentium fonts-sil-gentium 20081126:1.02-13 install ok installed fonts-sil-gentium-basic fonts-sil-gentium-basic 1.1-7 install ok installed fonts-stix fonts-stix 1.1.1-1 install ok installed fonts-texgyre fonts-texgyre 20140520-1 install ok installed freecontact freecontact 1.0.21-3+b1 install ok installed freeglut3:amd64 freeglut3 2.8.1-2 install ok installed g++ g++ 4:4.9.2-2 install ok installed g++-4.9 g++-4.9 4.9.2-10 install ok installed gamgi gamgi 0.17.1-1 install ok installed garlic garlic 1.6-1.1 install ok installed gasic gasic 0.0.r18-2 install ok installed gawk gawk 1:4.1.1+dfsg-1 install ok installed gbrowse gbrowse 2.54+dfsg-3 install ok installed gcc gcc 4:4.9.2-2 install ok installed gcc-4.9 gcc-4.9 4.9.2-10 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10 install ok installed gconf-service gconf-service 3.2.6-3 install ok installed gconf2 gconf2 3.2.6-3 install ok installed gconf2-common gconf2-common 3.2.6-3 install ok installed gdpc gdpc 2.2.5-3 install ok installed genometools genometools 1.5.3-2 install ok installed genometools-common genometools-common 1.5.3-2 install ok installed gentle gentle 1.9+cvs20100605+dfsg1-3 install ok installed gettext gettext 0.19.3-2 install ok installed gettext-base gettext-base 0.19.3-2 install ok installed gff2aplot gff2aplot 2.0-7 install ok installed gff2ps gff2ps 0.98d-4 install ok installed gfortran gfortran 4:4.9.2-2 install ok installed gfortran-4.9 gfortran-4.9 4.9.2-10 deinstall ok config-files ghemical ghemical 3.0.0-1 install ok installed ghostscript ghostscript 9.06~dfsg-2+deb8u6 install ok installed giira giira 0.0.20140210-2 install ok installed gir1.2-glib-2.0:amd64 gir1.2-glib-2.0 1.42.0-2.2 install ok installed glam2 glam2 1064-3 install ok installed glib-networking:amd64 glib-networking 2.42.0-2 install ok installed glib-networking-common glib-networking-common 2.42.0-2 install ok installed glib-networking-services glib-networking-services 2.42.0-2 install ok installed glpk-utils glpk-utils 4.55-1 install ok installed gnome-mime-data gnome-mime-data 2.18.0-1 install ok installed gnupg gnupg 1.4.18-7+deb8u4 install ok installed gnuplot gnuplot 4.6.6-2 install ok installed gnuplot-data gnuplot-data 4.6.6-2 install ok installed gnuplot-nox gnuplot-nox 4.6.6-2 install ok installed gnuplot-tex gnuplot-tex 4.6.6-2 install ok installed gnustep-back-common gnustep-back-common 0.24.0-4 install ok installed gnustep-back0.20 gnustep-back0.20 0.20.1-2.1 install ok installed gnustep-back0.20-art gnustep-back0.20-art 0.20.1-2.1 install ok installed gnustep-back0.24 gnustep-back0.24 0.24.0-4 install ok installed gnustep-back0.24-cairo gnustep-back0.24-cairo 0.24.0-4 install ok installed gnustep-base-common gnustep-base-common 1.24.7-1 install ok installed gnustep-base-runtime gnustep-base-runtime 1.24.7-1 install ok installed gnustep-common gnustep-common 2.6.6-3 install ok installed gnustep-gui-common gnustep-gui-common 0.24.0-3 install ok installed gnustep-gui-runtime gnustep-gui-runtime 0.24.0-3 install ok installed gpgv gpgv 1.4.18-7+deb8u4 install ok installed graphviz graphviz 2.38.0-7 install ok installed grep grep 2.20-4.1 install ok installed grinder grinder 0.5.3-3 install ok installed groff groff 1.22.2-8 install ok installed groff-base groff-base 1.22.2-8 install ok installed gromacs gromacs 5.0.2-1 install ok installed gromacs-data gromacs-data 5.0.2-1 install ok installed gsettings-desktop-schemas gsettings-desktop-schemas 3.14.1-1 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.2 install ok installed gstreamer1.0-plugins-base:amd64 gstreamer1.0-plugins-base 1.4.4-2+deb8u1 install ok installed gzip gzip 1.6-4 install ok installed heirloom-mailx heirloom-mailx 12.5-4 install ok installed hhsuite hhsuite 2.0.16-5 install ok installed hhsuite-data hhsuite-data 2.0.16-5 install ok installed hicolor-icon-theme hicolor-icon-theme 0.13-1 install ok installed hmmer hmmer 3.1b1-3 install ok installed hmmer2 hmmer2 2.3.2-8 install ok installed hostname hostname 3.15 install ok installed icedtea-6-jre-cacao:amd64 icedtea-6-jre-cacao 6b38-1.13.10-1~deb7u1 install ok installed icedtea-6-jre-jamvm:amd64 icedtea-6-jre-jamvm 6b38-1.13.10-1~deb7u1 install ok installed icedtea-netx:amd64 icedtea-netx 1.5.3-1 install ok installed icedtea-netx-common icedtea-netx-common 1.5.3-1 install ok installed idba idba 1.1.2-1 install ok installed ifupdown ifupdown 0.7.53.1 install ok installed imagemagick imagemagick 8:6.8.9.9-5+deb8u11 install ok installed imagemagick-6.q16 imagemagick-6.q16 8:6.8.9.9-5+deb8u11 install ok installed imagemagick-common imagemagick-common 8:6.8.9.9-5+deb8u11 install ok installed infernal infernal 1.1.1-2 install ok installed init init 1.22 install ok installed init-system-helpers init-system-helpers 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed intltool-debian intltool-debian 0.35.0+20060710.1 install ok installed ipig ipig 0.0.r5-1 install ok installed iproute iproute 1:3.16.0-2 install ok installed iproute2 iproute2 3.16.0-2 install ok installed ipython ipython 2.3.0-2 install ok installed isc-dhcp-client isc-dhcp-client 4.3.1-6+deb8u2 install ok installed isc-dhcp-common isc-dhcp-common 4.3.1-6+deb8u2 install ok installed iso-codes iso-codes 3.57-1 install ok installed jalview jalview 2.7.dfsg-4 install ok installed jarwrapper jarwrapper 0.48+deb8u1 install ok installed java-common java-common 0.52 install ok installed java-wrappers java-wrappers 0.1.28 install ok installed javahelp2 javahelp2 2.0.05.ds1-7 install ok installed javascript-common javascript-common 11 install ok installed jellyfish jellyfish 2.1.4-1 install ok installed jmol jmol 12.2.32+dfsg2-1 install ok installed jmol-applet jmol-applet 12.2.32+dfsg2-1 install ok installed junit junit 3.8.2-8 install ok installed junit4 junit4 4.11-3 install ok installed kalign kalign 1:2.03+20110620-2 install ok installed king king 2.21.120420+dfsg-1 install ok installed kissplice kissplice 2.2.1-3 install ok installed krb5-locales krb5-locales 1.12.1+dfsg-19+deb8u4 install ok installed ksh ksh 93u+20120801-1 install ok installed laptop-detect laptop-detect 0.13.7 install ok installed last-align last-align 490-1 install ok installed lesstif2:amd64 lesstif2 1:0.95.2-1.1 install ok installed libace-perl libace-perl 1.92-3+b1 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libai-fann-perl libai-fann-perl 0.10-2+b1 install ok installed libaio1:amd64 libaio1 0.3.110-1 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.09-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.02-3 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-3+b1 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-2 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-2 install ok installed libamd2.3.1:amd64 libamd2.3.1 1:4.2.1-3 install ok installed libanfo0 libanfo0 0.98-4+b1 install ok installed libanyevent-cachedns-perl libanyevent-cachedns-perl 0.08-1 install ok installed libanyevent-http-perl libanyevent-http-perl 2.21-1 install ok installed libanyevent-perl libanyevent-perl 7.070-3 install ok installed libao-common libao-common 1.1.0-3 install ok installed libao4 libao4 1.1.0-3 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-1 install ok installed libapache-mime4j-java libapache-mime4j-java 0.7.2-3 install ok installed libapache-pom-java libapache-pom-java 10-2 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.9~1624218-2+deb8u2 install ok installed libapache2-reload-perl libapache2-reload-perl 0.12-3 install ok installed libapr1:amd64 libapr1 1.5.1-3 install ok installed libaprutil1:amd64 libaprutil1 1.5.4-1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.5.4-1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.5.4-1 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libarchive-extract-perl libarchive-extract-perl 0.72-1 install ok installed libarchive13:amd64 libarchive13 3.1.2-11+deb8u3 install ok installed libargtable2-0 libargtable2-0 12-1.1 install ok installed libarray-compare-perl libarray-compare-perl 2.11-1 install ok installed libart-2.0-2:amd64 libart-2.0-2 2.3.21-2 install ok installed libasan1:amd64 libasan1 4.9.2-10 install ok installed libasound2:amd64 libasound2 1.0.28-1 install ok installed libasound2-data libasound2-data 1.0.28-1 install ok installed libaspell15:amd64 libaspell15 0.60.7~20110707-1.3 install ok installed libasprintf-dev:amd64 libasprintf-dev 0.19.3-2 install ok installed libasprintf0c2:amd64 libasprintf0c2 0.19.3-2 install ok installed libasync-interrupt-perl libasync-interrupt-perl 1.20-1+b1 install ok installed libasyncns0:amd64 libasyncns0 0.8-5 install ok installed libatk-bridge2.0-0:amd64 libatk-bridge2.0-0 2.14.0-2 install ok installed libatk-wrapper-java libatk-wrapper-java 0.30.5-1 install ok installed libatk-wrapper-java-jni:amd64 libatk-wrapper-java-jni 0.30.5-1 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.14.0-1 install ok installed libatk1.0-data libatk1.0-data 2.14.0-1 install ok installed libatlas3-base libatlas3-base 3.10.2-7 install ok installed libatm1:amd64 libatm1 1:2.5.1-1.5 install ok installed libatomic1:amd64 libatomic1 4.9.2-10 install ok installed libatspi2.0-0:amd64 libatspi2.0-0 2.14.0-1 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudio2:amd64 libaudio2 1.9.4-3 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.31-5 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.31-5 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.31-5 install ok installed libavahi-glib1:amd64 libavahi-glib1 0.6.31-5 install ok installed libaxis-java libaxis-java 1.4-22 install ok installed libb-hooks-endofscope-perl libb-hooks-endofscope-perl 0.13-1 install ok installed libb-hooks-op-check-perl libb-hooks-op-check-perl 0.19-2+b1 install ok installed libbackport-util-concurrent-java libbackport-util-concurrent-java 3.1-3 install ok installed libball1.4 libball1.4 1.4.2+20140406-1+b2 install ok installed libball1.4-data libball1.4-data 1.4.2+20140406-1 install ok installed libballview1.4 libballview1.4 1.4.2+20140406-1+b2 install ok installed libbambamc0 libbambamc0 0.0.50-1 install ok installed libbamtools2.3.0 libbamtools2.3.0 2.3.0+dfsg-2 install ok installed libbareword-filehandles-perl libbareword-filehandles-perl 0.003-1+b2 install ok installed libbcmail-java libbcmail-java 1.49+dfsg-3+deb8u2 install ok installed libbcpkix-java libbcpkix-java 1.49+dfsg-3+deb8u2 install ok installed libbcprov-java libbcprov-java 1.49+dfsg-3+deb8u2 install ok installed libbctsp-java libbctsp-java 1.44+dfsg-3.1+deb7u1 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.700-1 install ok installed libbio-graphics-perl libbio-graphics-perl 2.39-2 install ok installed libbio-perl-perl libbio-perl-perl 1.6.924-1 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.6.9-2 install ok installed libbio-scf-perl libbio-scf-perl 1.03-2+b1 install ok installed libbiojava-java libbiojava-java 1:1.7.1-5 install ok installed libbiojava1.7-java libbiojava1.7-java 1:1.7.1-5 install ok installed libbit-vector-perl libbit-vector-perl 7.3-1+b2 install ok installed libblas-common libblas-common 1.2.20110419-10 install ok installed libblas-dev libblas-dev 1.2.20110419-10 install ok installed libblas3 libblas3 1.2.20110419-10 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbonobo2-0:amd64 libbonobo2-0 2.32.1-3 install ok installed libbonobo2-common libbonobo2-common 2.32.1-3 install ok installed libboost-chrono1.55.0:amd64 libboost-chrono1.55.0 1.55.0+dfsg-3 install ok installed libboost-date-time1.49.0 libboost-date-time1.49.0 1.49.0-3.2 install ok installed libboost-date-time1.55.0:amd64 libboost-date-time1.55.0 1.55.0+dfsg-3 install ok installed libboost-filesystem1.49.0 libboost-filesystem1.49.0 1.49.0-3.2 install ok installed libboost-filesystem1.55.0:amd64 libboost-filesystem1.55.0 1.55.0+dfsg-3 install ok installed libboost-iostreams1.49.0 libboost-iostreams1.49.0 1.49.0-3.2 install ok installed libboost-iostreams1.55.0:amd64 libboost-iostreams1.55.0 1.55.0+dfsg-3 install ok installed libboost-math1.55.0:amd64 libboost-math1.55.0 1.55.0+dfsg-3 install ok installed libboost-mpi1.55.0 libboost-mpi1.55.0 1.55.0+dfsg-3 install ok installed libboost-program-options1.49.0 libboost-program-options1.49.0 1.49.0-3.2 install ok installed libboost-program-options1.55.0:amd64 libboost-program-options1.55.0 1.55.0+dfsg-3 install ok installed libboost-random1.55.0:amd64 libboost-random1.55.0 1.55.0+dfsg-3 install ok installed libboost-regex1.49.0 libboost-regex1.49.0 1.49.0-3.2 install ok installed libboost-regex1.55.0:amd64 libboost-regex1.55.0 1.55.0+dfsg-3 install ok installed libboost-serialization1.55.0:amd64 libboost-serialization1.55.0 1.55.0+dfsg-3 install ok installed libboost-system1.49.0 libboost-system1.49.0 1.49.0-3.2 install ok installed libboost-system1.55.0:amd64 libboost-system1.55.0 1.55.0+dfsg-3 install ok installed libboost-thread1.49.0 libboost-thread1.49.0 1.49.0-3.2 install ok installed libboost-thread1.55.0:amd64 libboost-thread1.55.0 1.55.0+dfsg-3 install ok installed libboost-timer1.55.0:amd64 libboost-timer1.55.0 1.55.0+dfsg-3 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2907-1+b2 install ok installed libbsd0:amd64 libbsd0 0.7.0-2 install ok installed libbytecode-java libbytecode-java 0.92.svn.20090106-1.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc-dev-bin libc-dev-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed 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libcastor-xml-java 1.3.2-3 install ok installed libcbf0:amd64 libcbf0 0.9.2.2-1 install ok installed libcdparanoia0:amd64 libcdparanoia0 3.10.2+debian-11 install ok installed libcdt4 libcdt4 2.26.3-14+deb7u2 install ok installed libcdt5 libcdt5 2.38.0-7 install ok installed libcfitsio2:amd64 libcfitsio2 3.370-2+deb8u1 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.04-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.09-1 install ok installed libcgi-session-perl libcgi-session-perl 4.48-1+deb8u1 install ok installed libcgmanager0:amd64 libcgmanager0 0.33-2+deb8u2 install ok installed libcgraph5 libcgraph5 2.26.3-14+deb7u2 install ok installed libcgraph6 libcgraph6 2.38.0-7 install ok installed libcilkrts5:amd64 libcilkrts5 4.9.2-10 install ok installed libclass-c3-perl libclass-c3-perl 0.26-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.13-2+b1 install ok installed libclass-inspector-perl libclass-inspector-perl 1.28-1 install ok installed libclass-isa-perl libclass-isa-perl 0.36-5 install ok installed libclass-load-perl libclass-load-perl 0.22-1 install ok installed libclass-load-xs-perl libclass-load-xs-perl 0.08-1+b1 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.11-1 install ok installed libclass-tiny-perl libclass-tiny-perl 1.000-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-2+b4 install ok installed libclone-perl libclone-perl 0.37-1+b1 install ok installed libcloog-isl4:amd64 libcloog-isl4 0.18.2-1+b2 install ok installed libcneartree5:amd64 libcneartree5 3.1.1-2.1 install ok installed libcofoja-java libcofoja-java 1.1-r150-2 install ok installed libcolamd2.8.0:amd64 libcolamd2.8.0 1:4.2.1-3 install ok installed libcolord2:amd64 libcolord2 1.2.1-1+b2 install ok installed libcolorhug2:amd64 libcolorhug2 1.2.1-1+b2 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcommon-sense-perl libcommon-sense-perl 3.73-2+b3 install ok installed libcommons-cli-java libcommons-cli-java 1.2-3 install ok installed libcommons-codec-java libcommons-codec-java 1.9-1 install ok installed libcommons-collections-java libcommons-collections-java 2.1.1-10 install ok installed libcommons-collections3-java libcommons-collections3-java 3.2.1-7+deb8u1 install ok installed libcommons-compress-java libcommons-compress-java 1.9-1 install ok installed libcommons-dbcp-java libcommons-dbcp-java 1.4-5 install ok installed libcommons-discovery-java libcommons-discovery-java 0.5-3 install ok installed libcommons-httpclient-java libcommons-httpclient-java 3.1-11+deb8u1 install ok installed libcommons-io-java libcommons-io-java 2.4-2 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-2 install ok installed libcommons-lang-java libcommons-lang-java 2.6-4 install ok installed libcommons-logging-java libcommons-logging-java 1.2-1 install ok installed libcommons-math3-java libcommons-math3-java 3.3-1 install ok installed libcommons-net1-java libcommons-net1-java 1.4.1-5 install ok installed libcommons-net2-java libcommons-net2-java 2.2-2 install ok installed libcommons-parent-java libcommons-parent-java 22-2 install ok installed libcommons-pool-java libcommons-pool-java 1.6-2 install ok installed libconfig-general-perl libconfig-general-perl 2.56-1 install ok installed libconfig-inifiles-perl libconfig-inifiles-perl 2.83-3 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.76-3+b2 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.123-2 install ok installed libcpan-meta-perl libcpan-meta-perl 2.142690-1 install ok installed libcqrlib2:amd64 libcqrlib2 1.1.2-2.1 install ok installed libcr0 libcr0 0.8.5-2.2 install ok installed libcroco3:amd64 libcroco3 0.6.8-3+b1 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-2 install ok installed libcrypt-ssleay-perl libcrypt-ssleay-perl 0.58-1+b2 install ok installed libcryptsetup4:amd64 libcryptsetup4 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libdatrie1:amd64 libdatrie1 0.2.8-1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdbd-mysql-perl libdbd-mysql-perl 4.028-2+deb8u2 install ok installed libdbd-pg-perl libdbd-pg-perl 3.4.2-1 install ok installed libdbd-sqlite3-perl libdbd-sqlite3-perl 1.44-1 install ok installed libdbi-perl libdbi-perl 1.631-3+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.8.22-0+deb8u1 install ok installed libdbus-glib-1-2:amd64 libdbus-glib-1-2 0.102-1 install ok installed libdconf1:amd64 libdconf1 0.22.0-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevel-caller-perl libdevel-caller-perl 2.06-1+b2 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.13-1 install ok installed libdevel-lexalias-perl libdevel-lexalias-perl 0.05-1+b2 install ok installed libdevel-partialdump-perl libdevel-partialdump-perl 0.17-1 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 1.3400-1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.12-1 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1 install ok installed libdirectfb-1.2-9:amd64 libdirectfb-1.2-9 1.2.10.0-5.1 install ok installed libdist-checkconflicts-perl libdist-checkconflicts-perl 0.11-1 install ok installed libdjvulibre-text libdjvulibre-text 3.5.25.4-4 install ok installed libdjvulibre21:amd64 libdjvulibre21 3.5.25.4-4+b1 install ok installed libdns-export100 libdns-export100 1:9.9.5.dfsg-9+deb8u14 install ok installed libdom4j-java libdom4j-java 1.6.1+dfsg.3-2 install ok installed libdpkg-perl libdpkg-perl 1.17.27 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.58-2 install ok installed libdrm-nouveau1a:amd64 libdrm-nouveau1a 2.4.40-1~deb7u2 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.58-2 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.58-2 install ok installed libdrm2:amd64 libdrm2 2.4.58-2 install ok installed libedit2:amd64 libedit2 3.1-20140620-2 install ok installed libelf1:amd64 libelf1 0.159-4.2 install ok installed libelfg0:amd64 libelfg0 0.8.13-5 install ok installed libelk0 libelk0 3.99.8-2.1 install ok installed libencode-locale-perl libencode-locale-perl 1.03-1 install ok installed liberror-perl liberror-perl 0.17-1.1 install ok installed libev-perl libev-perl 4.18-1 install ok installed libeval-closure-perl libeval-closure-perl 0.11-1 install ok installed libexif12:amd64 libexif12 0.6.21-2 install ok installed libexiv2-12 libexiv2-12 0.23-1 install ok installed libexiv2-13:amd64 libexiv2-13 0.24-4.1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u4 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.1.0-6+deb8u4 install ok installed libexporter-tiny-perl libexporter-tiny-perl 0.038-2 install ok installed libfakeroot:amd64 libfakeroot 1.20.2-1 install ok installed libfann2:amd64 libfann2 2.1.0~beta+dfsg-1 install ok installed libfcgi-perl libfcgi-perl 0.77-1+deb8u1 install ok installed libffi5:amd64 libffi5 3.0.10-3 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libffindex0 libffindex0 0.9.9.3-2 install ok installed libfftw3-3:amd64 libfftw3-3 3.3.4-2 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.4-2 install ok installed libfftw3-long3:amd64 libfftw3-long3 3.3.4-2 install ok installed libfftw3-single3:amd64 libfftw3-single3 3.3.4-2 install ok installed libfile-basedir-perl libfile-basedir-perl 0.03-1 install ok installed libfile-chdir-perl libfile-chdir-perl 0.1008-1 install ok installed libfile-copy-recursive-perl libfile-copy-recursive-perl 0.38-1 install ok installed libfile-desktopentry-perl libfile-desktopentry-perl 0.07-1 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-1+b1 install ok installed libfile-homedir-perl libfile-homedir-perl 1.00-1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-mimeinfo-perl libfile-mimeinfo-perl 0.26-1 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.003-1 install ok installed libfile-which-perl libfile-which-perl 1.09-1 install ok installed libflac8:amd64 libflac8 1.3.0-3 install ok installed libflite1:amd64 libflite1 1.4-release-12 install ok installed libfltk-images1.3:amd64 libfltk-images1.3 1.3.2-6+b1 install ok installed libfltk1.3:amd64 libfltk1.3 1.3.2-6+b1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-1 install ok installed libfont-ttf-perl libfont-ttf-perl 1.04-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.2-1+b2 install ok installed libfreecontact0 libfreecontact0 1.0.21-3+b1 install ok installed libfreehep-export-java libfreehep-export-java 2.1.1-2 install ok installed libfreehep-graphics2d-java libfreehep-graphics2d-java 2.1.1-4 install ok installed libfreehep-graphicsio-emf-java libfreehep-graphicsio-emf-java 2.1.1-emfplus+dfsg1-2 install ok installed libfreehep-graphicsio-java libfreehep-graphicsio-java 2.1.1-3 install ok installed libfreehep-graphicsio-pdf-java libfreehep-graphicsio-pdf-java 2.1.1+dfsg-1 install ok installed libfreehep-graphicsio-ps-java libfreehep-graphicsio-ps-java 2.1.1-1 install ok installed libfreehep-graphicsio-svg-java libfreehep-graphicsio-svg-java 2.1.1-3 install ok installed libfreehep-graphicsio-swf-java libfreehep-graphicsio-swf-java 2.1.1+dfsg-1 install ok installed libfreehep-graphicsio-tests-java libfreehep-graphicsio-tests-java 2.1.1+dfsg1-3 install ok installed libfreehep-io-java libfreehep-io-java 2.0.2-4 install ok installed libfreehep-swing-java libfreehep-swing-java 2.0.3-3 install ok installed libfreehep-util-java libfreehep-util-java 2.0.2-5 install ok installed libfreehep-xml-java libfreehep-xml-java 2.1.2+dfsg1-3 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u2 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-1 install ok installed libftgl2:amd64 libftgl2 2.1.3~rc5-4+nmu1 install ok installed libg20 libg20 0.72-5+b1 install ok installed libgcc-4.9-dev:amd64 libgcc-4.9-dev 4.9.2-10 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10 install ok installed libgcj-common libgcj-common 1:4.9.1-7 install ok installed libgconf-2-4:amd64 libgconf-2-4 3.2.6-3 install ok installed libgconf2-4:amd64 libgconf2-4 3.2.6-3 install ok installed libgcrypt11:amd64 libgcrypt11 1.5.0-5+deb7u4 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgd-graph-perl libgd-graph-perl 1.48-2 install ok installed libgd-perl libgd-perl 2.53-1+b1 install ok installed libgd-svg-perl libgd-svg-perl 0.33-1 install ok installed libgd-text-perl libgd-text-perl 0.86-9 install ok installed libgd2-xpm:amd64 libgd2-xpm 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libgraphite2-3 1.3.10-1~deb8u1 install ok installed libgraphviz-perl libgraphviz-perl 2.16-1 install ok installed libgs9 libgs9 9.06~dfsg-2+deb8u6 install ok installed libgs9-common libgs9-common 9.06~dfsg-2+deb8u6 install ok installed libgsl0ldbl libgsl0ldbl 1.16+dfsg-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.12.1+dfsg-19+deb8u4 install ok installed libgstreamer-plugins-base1.0-0:amd64 libgstreamer-plugins-base1.0-0 1.4.4-2+deb8u1 install ok installed libgstreamer1.0-0:amd64 libgstreamer1.0-0 1.4.4-2+deb8u1 install ok installed libgtextutils0:amd64 libgtextutils0 0.7-2 install ok installed libgtk-3-0:amd64 libgtk-3-0 3.14.5-1+deb8u1 install ok installed libgtk-3-bin libgtk-3-bin 3.14.5-1+deb8u1 install ok installed libgtk-3-common libgtk-3-common 3.14.5-1+deb8u1 install ok installed libgtk2.0-0:amd64 libgtk2.0-0 2.24.25-3+deb8u2 install ok installed libgtk2.0-bin libgtk2.0-bin 2.24.25-3+deb8u2 install ok installed libgtk2.0-common libgtk2.0-common 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installed libhttpcore-java libhttpcore-java 4.3.3-1 install ok installed libhttpmime-java libhttpmime-java 4.3.5-2 install ok installed libhwloc-plugins libhwloc-plugins 1.10.0-3 install ok installed libhwloc5:amd64 libhwloc5 1.10.0-3 install ok installed libibverbs1 libibverbs1 1.1.8-1.1 install ok installed libice-dev:amd64 libice-dev 2:1.0.9-1+b1 install ok installed libice6:amd64 libice6 2:1.0.9-1+b1 install ok installed libicu48:amd64 libicu48 4.8.1.1-12+deb7u3 install ok installed libicu52:amd64 libicu52 52.1-8+deb8u6 install ok installed libidn11:amd64 libidn11 1.29-1+deb8u2 install ok installed libieee1284-3:amd64 libieee1284-3 0.2.11-12 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-10 install ok installed libilmbase6:amd64 libilmbase6 1.0.1-6.1 install ok installed libimport-into-perl libimport-into-perl 1.002004-1 install ok installed libindirect-perl libindirect-perl 0.33-1 install ok installed libint1 libint1 1.1.5-1 install ok installed libio-all-perl 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installed libitext-java libitext-java 2.1.7-9 install ok installed libitext5-java libitext5-java 5.5.3-2 install ok installed libitm1:amd64 libitm1 4.9.2-10 install ok installed libjaba-client-java libjaba-client-java 0+dfsg-1 install ok installed libjam-java libjam-java 0.0.r304-1 install ok installed libjas-plotter-java libjas-plotter-java 2.2.6+dfsg1-2 install ok installed libjasper1:amd64 libjasper1 1.900.1-debian1-2.4+deb8u3 install ok installed libjava-xmlbuilder-java libjava-xmlbuilder-java 0.4-2 install ok installed libjaxen-java libjaxen-java 1.1.6-1 install ok installed libjaxme-java libjaxme-java 0.5.2+dfsg-6 install ok installed libjbig0:amd64 libjbig0 2.1-3.1 install ok installed libjbig2dec0 libjbig2dec0 0.13-4~deb8u2 install ok installed libjbzip2-java libjbzip2-java 0.9.1-3 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1 install ok installed libjcommon-java libjcommon-java 1.0.16-4 install ok installed libjdom1-java libjdom1-java 1.1.3-1 install ok installed libjebl2-java libjebl2-java 0.0.r22-1 install ok installed libjellyfish-2.0-2 libjellyfish-2.0-2 2.1.4-1 install ok installed libjets3t-java libjets3t-java 0.8.1+dfsg-1 install ok installed libjgoodies-common-java libjgoodies-common-java 1.4.0-2 install ok installed libjgoodies-forms-java libjgoodies-forms-java 1.6.0-4 install ok installed libjmol-java libjmol-java 12.2.32+dfsg2-1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.3.1-12 install ok installed libjpeg8:amd64 libjpeg8 8d-1+deb7u1 install ok installed libjpeg8-dev:amd64 libjpeg8-dev 8d-1+deb7u1 install ok installed libjs-jquery libjs-jquery 1.7.2+dfsg-3.2 install ok installed libjs-jquery-ui libjs-jquery-ui 1.10.1+dfsg-1 install ok installed libjs-prototype libjs-prototype 1.7.1-3 install ok installed libjs-scriptaculous libjs-scriptaculous 1.9.0-2 install ok installed libjs-sphinxdoc libjs-sphinxdoc 1.2.3+dfsg-1 install ok installed libjs-underscore libjs-underscore 1.7.0~dfsg-1 install ok installed libjsch-java libjsch-java 0.1.51-1 install ok installed libjson-c2:amd64 libjson-c2 0.11-4 install ok installed libjson-glib-1.0-0:amd64 libjson-glib-1.0-0 1.0.2-1 install ok installed libjson-glib-1.0-common libjson-glib-1.0-common 1.0.2-1 install ok installed libjson-perl libjson-perl 2.61-1 install ok installed libjson-xs-perl libjson-xs-perl 2.340-1+b2 install ok installed libjson0:amd64 libjson0 0.11-4 install ok installed libjsoncpp0 libjsoncpp0 0.6.0~rc2-3.1 install ok installed libjswingreader-java libjswingreader-java 0.3-1 install ok installed libjzlib-java libjzlib-java 1.1.3-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.12.1+dfsg-19+deb8u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-5+b1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed libkpathsea6 libkpathsea6 2014.20140926.35254-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.12.1+dfsg-19+deb8u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.12.1+dfsg-19+deb8u4 install ok installed liblapack-dev liblapack-dev 3.5.0-4 install ok installed liblapack3 liblapack3 3.5.0-4 install ok installed liblcms1:amd64 liblcms1 1.19.dfsg2-1.2+deb7u1 install ok installed liblcms2-2:amd64 liblcms2-2 2.6-3+deb8u1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.40+dfsg-1+deb8u3 install ok installed liblensfun-data liblensfun-data 0.2.8-2 install ok installed liblensfun0 liblensfun0 0.2.8-2 install ok installed liblexical-sealrequirehints-perl liblexical-sealrequirehints-perl 0.007-1+b2 install ok installed liblist-allutils-perl liblist-allutils-perl 0.09-1 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.33-2+b1 install ok installed libllvm3.5:amd64 libllvm3.5 1:3.5-10 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblog-message-perl liblog-message-perl 0.8-1 install ok installed liblog-message-simple-perl liblog-message-simple-perl 0.10-2 install ok installed liblog4cpp5 liblog4cpp5 1.0-4 install ok installed liblog4j1.2-java liblog4j1.2-java 1.2.17-5 install ok installed liblqr-1-0:amd64 liblqr-1-0 0.4.2-2 install ok installed liblsan0:amd64 liblsan0 4.9.2-10 install ok installed libltdl7:amd64 libltdl7 2.4.2-1.11+b1 install ok installed liblua5.1-0:amd64 liblua5.1-0 5.1.5-7.1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblzma-dev:amd64 liblzma-dev 5.1.1alpha+20120614-2+b3 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed liblzo2-2:amd64 liblzo2-2 2.08-1.2 install ok installed libmagic1:amd64 libmagic1 1:5.22+15-2+deb8u3 install ok installed libmagickcore-6.q16-2:amd64 libmagickcore-6.q16-2 8:6.8.9.9-5+deb8u11 install ok installed libmagickcore-6.q16-2-extra:amd64 libmagickcore-6.q16-2-extra 8:6.8.9.9-5+deb8u11 install ok installed libmagickcore5:amd64 libmagickcore5 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libmath-vec-perl 1.01-2 install ok installed libmath-vecstat-perl libmath-vecstat-perl 0.08-1 install ok installed libmiglayout-java libmiglayout-java 4.2-1 install ok installed libmime-tools-perl libmime-tools-perl 5.505-1 install ok installed libmldbm-perl libmldbm-perl 2.05-1 install ok installed libmng1:amd64 libmng1 1.0.10+dfsg-3.1+b3 install ok installed libmodule-build-perl libmodule-build-perl 0.421000-2+deb8u1 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-1 install ok installed libmodule-pluggable-perl libmodule-pluggable-perl 5.1-1 install ok installed libmodule-runtime-conflicts-perl libmodule-runtime-conflicts-perl 0.001-1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.014-1 install ok installed libmodule-signature-perl libmodule-signature-perl 0.73-1+deb8u2 install ok installed libmoo-perl libmoo-perl 1.006001-1 install ok installed libmoose-perl libmoose-perl 2.1213-1 install ok installed libmopac7-1gf 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libncbi6:amd64 libncbi6 6.1.20120620-8 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u2 install ok installed libncurses5-dev:amd64 libncurses5-dev 5.9+20140913-1+deb8u2 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u2 install ok installed libncursesw5-dev:amd64 libncursesw5-dev 5.9+20140913-1+deb8u2 install ok installed libnet-dbus-perl libnet-dbus-perl 1.0.0-2+b2 install ok installed libnet-http-perl libnet-http-perl 6.07-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.01-3 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.65-1+deb8u1 install ok installed libnetpbm10 libnetpbm10 2:10.0-15.2 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libnih-dbus1 libnih-dbus1 1.0.3-4.3 install ok installed libnih1 libnih1 1.0.3-4.3 install ok installed libnotify4:amd64 libnotify4 0.7.6-2 install ok installed libnspr4:amd64 libnspr4 2:4.12-1+debu8u1 install ok installed libnss3:amd64 libnss3 2:3.26-1+debu8u3 install ok installed libnuma1:amd64 libnuma1 2.0.10-1 install ok installed libobjc4:amd64 libobjc4 4.9.2-10 install ok installed libogg0:amd64 libogg0 1.3.2-1 install ok installed liboglappth2 liboglappth2 1.0.0-2 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.19-1 install ok installed libopenbabel4 libopenbabel4 2.3.2+dfsg-2 install ok installed libopenexr6:amd64 libopenexr6 1.6.1-8 install ok installed libopengl-perl libopengl-perl 0.6703+dfsg-1+b1 install ok installed libopenjpeg5:amd64 libopenjpeg5 1:1.5.2-3 deinstall ok config-files libopenmpi1.3 libopenmpi1.3 1.4.5-1 install ok installed libopenmpi1.6 libopenmpi1.6 1.6.5-9.1+deb8u1 install ok installed libopenms1.11 libopenms1.11 1.11.1-5 install ok installed liborbit-2-0:amd64 liborbit-2-0 1:2.14.19-0.3 install ok installed liborc-0.4-0:amd64 liborc-0.4-0 1:0.4.22-1 install ok installed liboro-java liboro-java 2.0.8a-9 install ok installed libossp-uuid-perl libossp-uuid-perl 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libpango-1.0-0 1.36.8-3 install ok installed libpango1.0-0:amd64 libpango1.0-0 1.36.8-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.36.8-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.36.8-3 install ok installed libpangox-1.0-0:amd64 libpangox-1.0-0 0.0.2-5 install ok installed libpangoxft-1.0-0:amd64 libpangoxft-1.0-0 1.36.8-3 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu4 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu4 install ok installed libparams-classify-perl libparams-classify-perl 0.013-4+b2 install ok installed libparams-util-perl libparams-util-perl 1.07-2+b1 install ok installed libparams-validate-perl libparams-validate-perl 1.13-1+b1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967009+dfsg-1 install ok installed libpathplan4 libpathplan4 2.38.0-7 install ok installed libpciaccess0:amd64 libpciaccess0 0.13.2-3+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libpcre3-dev:amd64 libpcre3-dev 2:8.35-3.3+deb8u4 install ok installed libpcrecpp0:amd64 libpcrecpp0 2:8.35-3.3+deb8u4 install ok installed libpcsclite1:amd64 libpcsclite1 1.8.13-1+deb8u1 install ok installed libperl4-corelibs-perl libperl4-corelibs-perl 0.003-1 install ok installed libperl5.20 libperl5.20 5.20.2-3+deb8u9 install ok installed libperlio-gzip-perl libperlio-gzip-perl 0.18-3+b1 install ok installed libpipeline1:amd64 libpipeline1 1.4.0-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.32.6-3 install ok installed libplplot11 libplplot11 5.9.9-5 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libpng12-dev:amd64 libpng12-dev 1.2.50-2+deb8u3 install ok installed libpod-coverage-perl libpod-coverage-perl 0.23-1 install ok installed libpod-latex-perl libpod-latex-perl 0.61-1 install ok installed libpod-readme-perl libpod-readme-perl 0.11-1 install ok installed libpolkit-agent-1-0:amd64 libpolkit-agent-1-0 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libpthread-stubs0:amd64 libpthread-stubs0 0.3-3 install ok installed libpthread-stubs0-dev:amd64 libpthread-stubs0-dev 0.3-4 install ok installed libpulse0:amd64 libpulse0 5.0-13 install ok installed libpvm3 libpvm3 3.4.5-12.6 install ok installed libpython-all-dev:amd64 libpython-all-dev 2.7.9-1 install ok installed libpython-dev:amd64 libpython-dev 2.7.9-1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.9-1 install ok installed libpython2.7:amd64 libpython2.7 2.7.9-2+deb8u1 install ok installed libpython2.7-dev:amd64 libpython2.7-dev 2.7.9-2+deb8u1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.9-2+deb8u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.9-2+deb8u1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.4.2-2 install ok installed libpython3.4-minimal:amd64 libpython3.4-minimal 3.4.2-1 install ok installed libpython3.4-stdlib:amd64 libpython3.4-stdlib 3.4.2-1 install ok installed libqhull5 libqhull5 2009.1-3 install ok installed libqhull6:amd64 libqhull6 2012.1-5 install ok installed libqsastime0:amd64 libqsastime0 5.10.0+dfsg-1 install ok installed libqt4-network:amd64 libqt4-network 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libqt4-opengl:amd64 libqt4-opengl 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libqt4-sql:amd64 libqt4-sql 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libqt4-sql-mysql:amd64 libqt4-sql-mysql 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libqt4-svg:amd64 libqt4-svg 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libqt4-test:amd64 libqt4-test 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libqt4-xml:amd64 libqt4-xml 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libqt4-xmlpatterns:amd64 libqt4-xmlpatterns 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libqtcore4:amd64 libqtcore4 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libqtdbus4:amd64 libqtdbus4 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libqtgui4:amd64 libqtgui4 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed libqtwebkit4:amd64 libqtwebkit4 2.3.4.dfsg-3 install ok installed libquadmath0:amd64 libquadmath0 4.9.2-10 install ok installed libreadline-dev:amd64 libreadline-dev 6.3-8+b3 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libreadline6-dev:amd64 libreadline6-dev 6.3-8+b3 install ok installed libreadonly-perl libreadonly-perl 2.000-1 install ok installed libregexp-common-perl libregexp-common-perl 2013031301-1 install ok installed libregexp-java libregexp-java 1.5-3 install ok installed librelaxng-datatype-java librelaxng-datatype-java 1.0+ds1-3 install ok installed librelion-1.3-1:amd64 librelion-1.3-1 1.3+dfsg-2 install ok installed librest-0.7-0:amd64 librest-0.7-0 0.7.92-3 install ok installed librg-exception-perl librg-exception-perl 1.0.3-1 install ok installed librg-reprof-bundle-perl librg-reprof-bundle-perl 1.0.1-1 install ok installed librg-utils-perl librg-utils-perl 1.0.43-2 install ok installed librole-tiny-perl librole-tiny-perl 1.003004-1 install ok installed librsvg2-2:amd64 librsvg2-2 2.40.5-1+deb8u2 install ok installed librsvg2-common:amd64 librsvg2-common 2.40.5-1+deb8u2 install ok installed librtmp0:amd64 librtmp0 2.4+20111222.git4e06e21-1 install ok installed librtmp1:amd64 librtmp1 2.4+20150115.gita107cef-1+deb8u1 install ok installed libruby1.9.1 libruby1.9.1 1.9.3.194-8.1+deb7u5 install ok installed libruby2.1:amd64 libruby2.1 2.1.5-2+deb8u3 install ok installed libsam-java libsam-java 1.113-1 install ok installed libsane:amd64 libsane 1.0.24-8+deb8u2 install ok installed libsane-common libsane-common 1.0.24-8+deb8u2 install ok installed libsane-extras:amd64 libsane-extras 1.0.22.3 install ok installed libsane-extras-common libsane-extras-common 1.0.22.3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.26.dfsg1-13+deb8u1 install ok installed libsaxonb-java libsaxonb-java 9.1.0.8+dfsg-1 install ok installed libsc-data libsc-data 2.3.1-16 install ok installed libsc7 libsc7 2.3.1-16 install ok installed libsctp1:amd64 libsctp1 1.0.16+dfsg-2 install ok installed libsdl1.2debian:amd64 libsdl1.2debian 1.2.15-10+b1 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libservlet2.5-java libservlet2.5-java 6.0.45+dfsg-1~deb8u1 install ok installed libset-intspan-perl libset-intspan-perl 1.19-1 install ok installed libset-scalar-perl libset-scalar-perl 1.29-1 install ok installed libsigsegv2:amd64 libsigsegv2 2.10-4+b1 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsm-dev:amd64 libsm-dev 2:1.2.2-1+b1 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsndfile1:amd64 libsndfile1 1.0.25-9.1+deb8u1 install ok installed libsnp-sites1 libsnp-sites1 1.5.0-1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.11-1 install ok installed libsocket-perl libsocket-perl 2.016-1 install ok installed libsoftware-license-perl libsoftware-license-perl 0.103010-3 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-1 install ok installed libsoup-gnome2.4-1:amd64 libsoup-gnome2.4-1 2.48.0-1+deb8u1 install ok installed libsoup2.4-1:amd64 libsoup2.4-1 2.48.0-1+deb8u1 install ok installed libspiffy-perl libspiffy-perl 0.41-1 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1 install ok installed libsprng2 libsprng2 2.0a-8 install ok installed libsqlite0 libsqlite0 2.8.17-12 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u2 install ok installed libsquizz libsquizz 0.99b+dfsg-3 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.4.3-4.1+deb8u1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u7 install ok installed libstaden-read1 libstaden-read1 1.13.7-1 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0607-1 install ok installed libstdc++-4.9-dev:amd64 libstdc++-4.9-dev 4.9.2-10 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10 install ok installed libstrictures-perl libstrictures-perl 1.005005-1 install ok installed libstring-approx-perl libstring-approx-perl 3.27-1+b2 install ok installed libsub-exporter-perl libsub-exporter-perl 0.986-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001011-1 install ok installed libsub-identify-perl libsub-identify-perl 0.08-1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsub-name-perl libsub-name-perl 0.12-1 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-2 install ok installed libsvg-perl libsvg-perl 2.59-1 install ok installed libsvm3 libsvm3 3.12-1 install ok installed libswitch-perl libswitch-perl 2.17-2 install ok installed libsynctex1 libsynctex1 2014.20140926.35254-6 install ok installed libsys-hostname-long-perl libsys-hostname-long-perl 1.4-3 install ok installed libsystemd-login0:amd64 libsystemd-login0 215-17+deb8u7 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtablelayout-java libtablelayout-java 20090826-2 install ok installed libtamuanova-0.2 libtamuanova-0.2 0.2-3 install ok installed libtask-weaken-perl libtask-weaken-perl 1.04-1 install ok installed libtasn1-3:amd64 libtasn1-3 2.13-2+deb7u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.2-3+deb8u3 install ok installed libtbb2 libtbb2 4.2~20140122-5 install ok installed libtcl8.5:amd64 libtcl8.5 8.5.17-1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.2+dfsg-2 install ok installed libtcmalloc-minimal4 libtcmalloc-minimal4 2.2.1-0.2 install ok installed libtdb1:amd64 libtdb1 1.3.6-0+deb8u1 install ok installed libterm-readkey-perl libterm-readkey-perl 2.32-1+b1 install ok installed libterm-readline-gnu-perl libterm-readline-gnu-perl 1.24-2+b1 install ok installed libterm-ui-perl libterm-ui-perl 0.42-1 install ok installed libtest-pod-perl libtest-pod-perl 1.48-1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-format-perl libtext-format-perl 0.59-1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-soundex-perl libtext-soundex-perl 3.4-1+b2 install ok installed libtext-template-perl libtext-template-perl 1.46-1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libthai-data libthai-data 0.1.21-1 install ok installed libthai0:amd64 libthai0 0.1.21-1 install ok installed libtheora0:amd64 libtheora0 1.1.1+dfsg.1-6 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-1 install ok installed libtiff4:amd64 libtiff4 3.9.6-11 install ok installed libtiff5:amd64 libtiff5 4.0.3-12.3+deb8u4 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo-dev:amd64 libtinfo-dev 5.9+20140913-1+deb8u2 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u2 install ok installed libtinyxml2.6.2:amd64 libtinyxml2.6.2 2.6.2-2 install ok installed libtk8.5:amd64 libtk8.5 8.5.17-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.2-1 install ok installed libtorque2 libtorque2 2.4.16+dfsg-1+deb7u4 install ok installed libtre5:amd64 libtre5 0.8.0-4+deb8u1 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.22-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.22-1 install ok installed libts-0.0-0:amd64 libts-0.0-0 1.0-11 install ok installed libtsan0:amd64 libtsan0 4.9.2-10 install ok installed libtxc-dxtn-s2tc0:amd64 libtxc-dxtn-s2tc0 0~git20131104-1.1 install ok installed libtype-tiny-perl libtype-tiny-perl 1.000004-1 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.010-1 install ok installed libubsan0:amd64 libubsan0 4.9.2-10 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed libunicode-map-perl libunicode-map-perl 0.112-11+b1 install ok installed libunistring0:amd64 libunistring0 0.9.3-5.2+b1 install ok installed libunwind8 libunwind8 1.1-3.2 install ok installed liburi-perl liburi-perl 1.64-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libusb-1.0-0:amd64 libusb-1.0-0 2:1.0.19-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libutempter0 libutempter0 1.1.5-4 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libv4l-0:amd64 libv4l-0 1.6.0-2 install ok installed libv4lconvert0:amd64 libv4lconvert0 1.6.0-2 install ok installed libvamsas-client-java libvamsas-client-java 0.2~git2011.10.17+1b42648-1 install ok installed libvariable-magic-perl libvariable-magic-perl 0.55-1 deinstall ok config-files libvibrant6a:amd64 libvibrant6a 6.1.20120620-2 install ok installed libvibrant6b:amd64 libvibrant6b 6.1.20120620-8 install ok installed libvisual-0.4-0:amd64 libvisual-0.4-0 0.4.0-6 install ok installed libvisual-0.4-plugins:amd64 libvisual-0.4-plugins 0.4.0.dfsg.1-7 install ok installed libvm-ec2-perl libvm-ec2-perl 1.28-1 install ok installed libvorbis0a:amd64 libvorbis0a 1.3.4-2 install ok installed libvorbisenc2:amd64 libvorbisenc2 1.3.4-2 install ok installed libvorbisfile3:amd64 libvorbisfile3 1.3.4-2 install ok installed libvpx1:amd64 libvpx1 1.3.0-3 install ok installed libvte-common libvte-common 1:0.28.2-5 install ok installed libvte9 libvte9 1:0.28.2-5 install ok installed libwayland-client0:amd64 libwayland-client0 1.6.0-2 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.6.0-2 install ok installed libwebp5:amd64 libwebp5 0.4.1-1.2+b2 install ok installed libwebpdemux1:amd64 libwebpdemux1 0.4.1-1.2+b2 install ok installed libwebpmux1:amd64 libwebpmux1 0.4.1-1.2+b2 install ok installed libwmf0.2-7:amd64 libwmf0.2-7 0.2.8.4-10.3+deb8u2 install ok installed libwrap0:amd64 libwrap0 7.6.q-25 install ok installed libwsdl4j-java libwsdl4j-java 1.6.3-1 install ok installed libwww-perl libwww-perl 6.08-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libwxbase2.8-0:amd64 libwxbase2.8-0 2.8.12.1-12 install ok installed libwxbase3.0-0:amd64 libwxbase3.0-0 3.0.2-1+b1 install ok installed libwxgtk2.8-0:amd64 libwxgtk2.8-0 2.8.12.1-12 install ok installed libwxgtk3.0-0:amd64 libwxgtk3.0-0 3.0.2-1+b1 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u1 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u1 install ok installed libx11-dev:amd64 libx11-dev 2:1.6.2-3+deb8u1 install ok installed libx11-doc libx11-doc 2:1.6.2-3+deb8u1 install ok installed libx11-protocol-perl libx11-protocol-perl 0.56-6 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.2-3+deb8u1 install ok installed libxau-dev:amd64 libxau-dev 1:1.0.8-1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.12-2+b1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.10-3+b1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.10-3+b1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.10-3+b1 install ok installed libxcb-present0:amd64 libxcb-present0 1.10-3+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.10-3+b1 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.10-3+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.10-3+b1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.10-3+b1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxcb1-dev:amd64 libxcb1-dev 1.10-3+b1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.4-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.1.14-1+b1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-2+b1 install ok installed libxdmcp-dev:amd64 libxdmcp-dev 1:1.1.1-1+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+b1 install ok installed libxdot4 libxdot4 2.38.0-7 install ok installed libxerces-c3.1:amd64 libxerces-c3.1 3.1.1-5.1+deb8u3 install ok installed libxerces2-java libxerces2-java 2.11.0-7 install ok installed libxext6:amd64 libxext6 2:1.3.3-1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.1-2+deb8u1 install ok installed libxft2:amd64 libxft2 2.3.2-1 install ok installed libxi6:amd64 libxi6 2:1.7.4-1+deb8u1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.3-1+b1 install ok installed libxkbcommon0:amd64 libxkbcommon0 0.4.3-2 install ok installed libxm4:amd64 libxm4 2.3.4-6+deb8u1 install ok installed libxml-checker-perl libxml-checker-perl 0.13-6 install ok installed libxml-commons-external-java libxml-commons-external-java 1.4.01-2 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-7 install ok installed libxml-dom-perl libxml-dom-perl 1.44-1 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-1 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-5 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0116+dfsg-1+deb8u2 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.92-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.11-1 install ok installed libxml-parser-perl libxml-parser-perl 2.41-3 install ok installed libxml-perl libxml-perl 0.08-2 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.07-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.40-2 install ok installed libxml-sax-perl libxml-sax-perl 0.99+dfsg-2 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.54-1 install ok installed libxml-simple-perl libxml-simple-perl 2.20-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.48-1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.13-7 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.13-1 install ok installed libxml2:amd64 libxml2 2.9.1+dfsg1-5+deb8u5 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-1 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-1 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-1 install ok installed libxom-java libxom-java 1.2.10-1 install ok installed libxp6:amd64 libxp6 1:1.0.2-2 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-0+deb8u1 install ok installed libxpp2-java libxpp2-java 2.1.10-7 install ok installed libxpp3-java libxpp3-java 1.1.4c-2 install ok installed libxrandr2:amd64 libxrandr2 2:1.4.2-1+deb8u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.8-1+b1 install ok installed libxshmfence1:amd64 libxshmfence1 1.1-4 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.28-2+deb8u3 install ok installed libxss1:amd64 libxss1 1:1.2.2-1 install ok installed libxt-dev:amd64 libxt-dev 1:1.1.4-1+b1 install ok installed libxt6:amd64 libxt6 1:1.1.4-1+b1 install ok installed libxtables10 libxtables10 1.4.21-2+b1 install ok installed libxtst6:amd64 libxtst6 2:1.2.2-1+deb8u1 install ok installed libxv1:amd64 libxv1 2:1.0.10-1+deb8u1 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.4-1+b1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.3-1+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.1.6-3 install ok installed libyaml-perl libyaml-perl 1.13-1 install ok installed libyaml-syck-perl libyaml-syck-perl 1.27-2+b2 install ok installed libyaml-tiny-perl libyaml-tiny-perl 1.64-1 install ok installed libzeep3.0 libzeep3.0 3.0.2-1+b2 install ok installed libzzip-0-13:amd64 libzzip-0-13 0.13.62-3+deb8u1 install ok installed linux-libc-dev:amd64 linux-libc-dev 3.16.51-2 install ok installed littler littler 0.2.1-1 install ok installed lksctp-tools lksctp-tools 1.0.16+dfsg-2 install ok installed lmodern lmodern 2.004.4-5 install ok installed login login 1:4.2-3+deb8u4 install ok installed logol-bin logol-bin 1.7.0-2 install ok installed loki loki 2.4.7.4-5 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed ltrsift ltrsift 1.0.2-1 install ok installed lua-filesystem:amd64 lua-filesystem 1.6.2-3 install ok installed lua-lpeg:amd64 lua-lpeg 0.12-1 install ok installed lua-md5:amd64 lua-md5 1.2+git+1+8d87fee-1 install ok installed lynx lynx 2.8.9dev1-2+deb8u1 install ok installed lynx-cur lynx-cur 2.8.9dev1-2+deb8u1 install ok installed macs macs 2.0.9.1-1 install ok installed mafft mafft 7.205-1 install ok installed make make 4.0-8.1 install ok installed man-db man-db 2.7.0.2-5 install ok installed manpages manpages 3.74-1 install ok installed manpages-dev manpages-dev 3.74-1 install ok installed mapsembler2 mapsembler2 2.1.6+dfsg-1 install ok installed maq maq 0.7.1-5 install ok installed maqview maqview 0.2.5-6 install ok installed massxpert massxpert 3.4.1-1 install ok installed massxpert-data massxpert-data 3.4.1-1 install ok installed mawk mawk 1.3.3-17 install ok installed med-bio med-bio 2.0 install ok installed med-config med-config 2.0 install ok installed med-tasks med-tasks 2.0 install ok installed melting melting 4.3.1+dfsg-1 install ok installed menu menu 2.1.47 install ok installed metastudent metastudent 1.0.11-2 install ok installed metastudent-data metastudent-data 1.0.1-2 install ok installed metastudent-data-2 metastudent-data-2 1.0.0-1 install ok installed microbiomeutil microbiomeutil 20101212+dfsg-1 install ok installed microbiomeutil-data microbiomeutil-data 20101212+dfsg-1 install ok installed mime-support mime-support 3.58 install ok installed minia minia 1.6088-1 install ok installed mipe mipe 1.1-4 install ok installed mira-assembler mira-assembler 4.0.2-1+b1 install ok installed mknfonts.tool mknfonts.tool 0.5-11+b4 install ok installed mlv-smile mlv-smile 1.47-3 install ok installed mothur mothur 1.33.3+dfsg-2 install ok installed mount mount 2.25.2-6 install ok installed mpi-default-bin mpi-default-bin 1.0.2+nmu2 install ok installed mpqc mpqc 2.3.1-16 install ok installed mrbayes mrbayes 3.2.3+dfsg-1 install ok installed mrs mrs 6.0.5+dfsg-1 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed mummer mummer 3.23~dfsg-2 install ok installed muscle muscle 1:3.8.31-1 install ok installed mustang mustang 3.2.2-1 install ok installed mysql-client-5.5 mysql-client-5.5 5.5.58-0+deb8u1 install ok installed mysql-common mysql-common 5.5.58-0+deb8u1 install ok installed mysql-server mysql-server 5.5.58-0+deb8u1 install ok installed mysql-server-5.5 mysql-server-5.5 5.5.58-0+deb8u1 install ok installed mysql-server-core-5.5 mysql-server-core-5.5 5.5.58-0+deb8u1 install ok installed nast-ier nast-ier 20101212+dfsg-1 install ok installed ncbi-blast+ ncbi-blast+ 2.2.29-3 install ok installed ncbi-data ncbi-data 6.1.20120620-8 install ok installed ncbi-epcr ncbi-epcr 2.3.12-1-2 install ok installed ncbi-seg ncbi-seg 0.0.20000620-2 install ok installed ncbi-tools-bin ncbi-tools-bin 6.1.20120620-8 install ok installed ncbi-tools-x11 ncbi-tools-x11 6.1.20120620-8 install ok installed ncoils ncoils 2002-4 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u2 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u2 install ok installed neobio neobio 0.0.20030929-1.1 install ok installed netbase netbase 5.3 install ok installed netpbm netpbm 2:10.0-15.2 install ok installed njplot njplot 2.4-2+b1 install ok installed norsnet norsnet 1.0.17-1 install ok installed norsp norsp 1.0.6-1 install ok installed notification-daemon notification-daemon 0.7.6-2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.3-1+deb8u1 install ok installed openjdk-6-jdk:amd64 openjdk-6-jdk 6b38-1.13.10-1~deb7u1 install ok installed openjdk-6-jre:amd64 openjdk-6-jre 6b38-1.13.10-1~deb7u1 install ok installed openjdk-6-jre-headless:amd64 openjdk-6-jre-headless 6b38-1.13.10-1~deb7u1 install ok installed openjdk-6-jre-lib openjdk-6-jre-lib 6b38-1.13.10-1~deb7u1 install ok installed openjdk-7-jdk:amd64 openjdk-7-jdk 7u111-2.6.7-1~deb8u1 install ok installed openjdk-7-jre:amd64 openjdk-7-jre 7u111-2.6.7-1~deb8u1 install ok installed openjdk-7-jre-headless:amd64 openjdk-7-jre-headless 7u111-2.6.7-1~deb8u1 install ok installed openmpi-bin openmpi-bin 1.6.5-9.1+deb8u1 install ok installed openmpi-checkpoint openmpi-checkpoint 1.6.5-9.1+deb8u1 install ok installed openmpi-common openmpi-common 1.6.5-9.1+deb8u1 install ok installed openms openms 1.11.1-5 install ok installed openms-common openms-common 1.11.1-5 install ok installed openssh-client openssh-client 1:6.7p1-5+deb8u4 install ok installed openssl openssl 1.0.1t-1+deb8u7 install ok installed paraclu paraclu 9-1 install ok installed parsinsert parsinsert 1.04-1 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed patch patch 2.7.5-1 install ok installed pdb2pqr pdb2pqr 1.9.0+dfsg-1 install ok installed pdl pdl 1:2.007-4 install ok installed perl perl 5.20.2-3+deb8u9 install ok installed perl-base perl-base 5.20.2-3+deb8u9 install ok installed perl-doc perl-doc 5.20.2-3+deb8u9 install ok installed perl-modules perl-modules 5.20.2-3+deb8u9 install ok installed perl-tk perl-tk 1:804.032-3+b3 install ok installed perlprimer perlprimer 1.1.21-2 install ok installed perm perm 0.4.0-1 install ok installed phylip phylip 1:3.696+dfsg-1 install ok installed phyml phyml 2:20120412-2 install ok installed phyutility phyutility 2.7.3-1 install ok installed picard-tools picard-tools 1.113-1 install ok installed plasmidomics plasmidomics 0.2.0-3 install ok installed plink plink 1.07-3 install ok installed po-debconf po-debconf 1.0.16+nmu3 install ok installed poa poa 2.0+20060928-3 install ok installed policykit-1 policykit-1 0.105-15~deb8u2 install ok installed poppler-data poppler-data 0.4.7-1 install ok installed populations populations 1.2.33+svn0120106-2.1 install ok installed pp-popularity-contest pp-popularity-contest 1.0.6-2+b1 install ok installed prank prank 0.0.140110-1 install ok installed predictnls predictnls 1.0.20-1 install ok installed predictprotein predictprotein 1.1.06-1 install ok installed prerex prerex 6.5.3-1 install ok installed preview-latex-style preview-latex-style 11.87-3+deb8u1 install ok installed prime-phylo prime-phylo 1.0.11-2 install ok installed primer3 primer3 2.3.6-1 install ok installed proalign proalign 0.603-1 install ok installed probabel probabel 0.4.3-2 install ok installed probalign probalign 1.4-3 install ok installed probcons probcons 1.12-9 install ok installed procps procps 2:3.3.9-9 install ok installed proda proda 1.0-8 install ok installed prodigal prodigal 1:2.6.1-1 install ok installed profbval profbval 1.0.22-1 install ok installed profisis profisis 1.0.11-1 install ok installed profnet-bval profnet-bval 1.0.22-2 install ok installed profnet-chop profnet-chop 1.0.22-2 install ok installed profnet-con profnet-con 1.0.22-2 install ok installed profnet-isis profnet-isis 1.0.22-2 install ok installed profnet-md profnet-md 1.0.22-2 install ok installed profnet-norsnet profnet-norsnet 1.0.22-2 install ok installed profnet-prof profnet-prof 1.0.22-2 install ok installed profnet-snapfun profnet-snapfun 1.0.22-2 install ok installed profphd profphd 1.0.40-1 install ok installed profphd-net profphd-net 1.0.22-2 install ok installed profphd-utils profphd-utils 1.0.10-1 install ok installed proftmb proftmb 1.1.12-2 install ok installed proj-data proj-data 4.8.0-5 install ok installed prosper prosper 1.00.4+cvs.2007.05.01-4 install ok installed ps2eps ps2eps 1.68+binaryfree-1 install ok installed psmisc psmisc 22.21-2 install ok installed psutils psutils 1.17.dfsg-2 install ok installed pvm pvm 3.4.5-12.6 install ok installed pycorrfit pycorrfit 0.8.3-2 install ok installed pymol pymol 1.7.2.1-1 install ok installed pynast pynast 1.2.2-1 install ok installed pyqi pyqi 0.3.2+dfsg-1 install ok installed pyscanfcs pyscanfcs 0.2.2-2 install ok installed python python 2.7.9-1 install ok installed python-all python-all 2.7.9-1 install ok installed python-all-dev python-all-dev 2.7.9-1 install ok installed python-ball python-ball 1.4.2+20140406-1+b2 install ok installed python-ballview python-ballview 1.4.2+20140406-1+b2 install ok installed python-biom-format python-biom-format 2.1+dfsg-1 install ok installed python-biopython python-biopython 1.64+dfsg-5 install ok installed python-biopython-doc python-biopython-doc 1.64+dfsg-5 install ok installed python-cairo python-cairo 1.8.8-1+b2 install ok installed python-chardet python-chardet 2.3.0-1 install ok installed python-cogent python-cogent 1.5.3-2 install ok installed python-crypto python-crypto 2.6.1-5+deb8u1 install ok installed python-dateutil python-dateutil 2.2-2 install ok installed python-decorator python-decorator 3.4.0-2 install ok installed python-dev python-dev 2.7.9-1 install ok installed python-docutils python-docutils 0.12+dfsg-1 install ok installed python-egenix-mxdatetime python-egenix-mxdatetime 3.2.8-1 install ok installed python-egenix-mxtools python-egenix-mxtools 3.2.8-1 install ok installed python-gdata python-gdata 2.0.18+dfsg1-2 install ok installed python-gi python-gi 3.14.0-1 install ok installed python-glade2 python-glade2 2.24.0-4 install ok installed python-gmpy python-gmpy 1.15-1 install ok installed python-gobject python-gobject 3.14.0-1 install ok installed python-gobject-2 python-gobject-2 2.28.6-12+b1 install ok installed python-gtk2 python-gtk2 2.24.0-4 install ok installed python-h5py python-h5py 2.2.1-1.1+b1 install ok installed python-htseq python-htseq 0.5.4p3-2 install ok installed python-imaging python-imaging 2.6.1-2+deb8u3 install ok installed python-jinja2 python-jinja2 2.7.3-1 install ok installed python-lxml python-lxml 3.4.0-1 install ok installed python-mako python-mako 1.0.0+dfsg-0.1 install ok installed python-markupsafe python-markupsafe 0.23-1+b1 install ok installed python-matplotlib python-matplotlib 1.4.2-3.1 install ok installed python-matplotlib-data python-matplotlib-data 1.4.2-3.1 install ok installed python-minimal python-minimal 2.7.9-1 install ok installed python-mock python-mock 1.0.1-3 install ok installed python-mpi4py python-mpi4py 1.3.1+hg20131106-2 install ok installed python-mpmath python-mpmath 0.19-1 install ok installed python-multipletau python-multipletau 0.1.4-1 install ok installed python-mysqldb python-mysqldb 1.2.3-2.1 install ok installed python-nose python-nose 1.3.4-1 install ok installed python-numpy python-numpy 1:1.8.2-2 install ok installed python-pexpect python-pexpect 3.2-1 install ok installed python-pil:amd64 python-pil 2.6.1-2+deb8u3 install ok installed python-pkg-resources python-pkg-resources 5.5.1-1 install ok installed python-pmw python-pmw 1.3.2-6 install ok installed python-pyfits python-pyfits 1:3.3-2+b1 install ok installed python-pyglet python-pyglet 1.1.4.dfsg-2 install ok installed python-pygments python-pygments 2.0.1+dfsg-1.1+deb8u1 install ok installed python-pyparsing python-pyparsing 2.0.3+dfsg1-1 install ok installed python-pyrex python-pyrex 0.9.8.5-2.1 install ok installed python-pysam python-pysam 0.7.7-1 install ok installed python-pysqlite2 python-pysqlite2 2.6.3-3 install ok installed python-qcli python-qcli 0.1.0-1 install ok installed python-renderpm:amd64 python-renderpm 3.1.8-3+deb8u1 install ok installed python-reportlab python-reportlab 3.1.8-3+deb8u1 install ok installed python-reportlab-accel:amd64 python-reportlab-accel 3.1.8-3+deb8u1 install ok installed python-roman python-roman 2.0.0-1 install ok installed python-scipy python-scipy 0.14.0-2 install ok installed python-simplegeneric python-simplegeneric 0.8.1-1 install ok installed python-sip python-sip 4.16.4+dfsg-1 install ok installed python-six python-six 1.8.0-1 install ok installed python-sphinx python-sphinx 1.2.3+dfsg-1 install ok installed python-sqlalchemy python-sqlalchemy 0.9.8+dfsg-0.1 install ok installed python-sqlalchemy-ext python-sqlalchemy-ext 0.9.8+dfsg-0.1 install ok installed python-support python-support 1.0.15 install ok installed python-sympy python-sympy 0.7.5-3 install ok installed python-tk python-tk 2.7.8-2+b1 install ok installed python-tz python-tz 2012c+dfsg-0.1 install ok installed python-wxgtk3.0 python-wxgtk3.0 3.0.1.1+dfsg-2 install ok installed python-wxversion python-wxversion 3.0.1.1+dfsg-2 install ok installed python-yaml python-yaml 3.11-2 install ok installed python2.7 python2.7 2.7.9-2+deb8u1 install ok installed python2.7-dev python2.7-dev 2.7.9-2+deb8u1 install ok installed python2.7-minimal python2.7-minimal 2.7.9-2+deb8u1 install ok installed python3 python3 3.4.2-2 install ok installed python3-minimal python3-minimal 3.4.2-2 install ok installed python3-nose python3-nose 1.3.4-1 install ok installed python3-pkg-resources python3-pkg-resources 5.5.1-1 install ok installed python3.4 python3.4 3.4.2-1 install ok installed python3.4-minimal python3.4-minimal 3.4.2-1 install ok installed qiime qiime 1.8.0+dfsg-4 install ok installed qiime-data qiime-data 1.8.0+dfsg-4 install ok installed qtcore4-l10n qtcore4-l10n 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1 install ok installed r-base-core r-base-core 3.1.1-1+deb8u1 install ok installed r-base-dev r-base-dev 3.1.1-1+deb8u1 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.26.1-1 install ok installed r-bioc-biobase r-bioc-biobase 2.24.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.10.0-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 0.6.1-1 install ok installed r-bioc-biomart r-bioc-biomart 2.20.0-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.32.1-1 install ok installed r-bioc-biovizbase r-bioc-biovizbase 1.12.3-1 install ok installed r-bioc-bsgenome r-bioc-bsgenome 1.32.0-1 install ok installed r-bioc-cummerbund r-bioc-cummerbund 2.6.1-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.0.2-2 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.0.6-1 install ok installed r-bioc-genomicfeatures r-bioc-genomicfeatures 1.16.3-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.16.4-2 install ok installed r-bioc-gviz r-bioc-gviz 1.8.4-1 install ok installed r-bioc-hilbertvis r-bioc-hilbertvis 1.24.0-1 install ok installed r-bioc-iranges r-bioc-iranges 1.22.10-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 1.16.1-2 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.24.2-1 install ok installed r-bioc-shortread r-bioc-shortread 1.22.0-1 install ok installed r-bioc-variantannotation r-bioc-variantannotation 1.10.5-1 install ok installed r-bioc-xvector r-bioc-xvector 0.4.0-1 install ok installed r-cran-abind r-cran-abind 1.4-0-2 install ok installed r-cran-ape r-cran-ape 3.1-4-1 install ok installed r-cran-base64enc r-cran-base64enc 0.1-2-1 install ok installed r-cran-batchjobs r-cran-batchjobs 1.4-1 install ok installed r-cran-bbmisc r-cran-bbmisc 1.7-1 install ok installed r-cran-bitops r-cran-bitops 1.0-6-1 install ok installed r-cran-boot r-cran-boot 1.3-13-1 install ok installed r-cran-brew r-cran-brew 1.0-6-1 install ok installed r-cran-checkmate r-cran-checkmate 1.5.0-1 install ok installed r-cran-chron r-cran-chron 2.3-45-1 install ok installed r-cran-class r-cran-class 7.3-11-1 install ok installed r-cran-cluster r-cran-cluster 1.15.3-1 install ok installed r-cran-codetools r-cran-codetools 0.2-9-1 install ok installed r-cran-colorspace r-cran-colorspace 1.2-4-1 install ok installed r-cran-dbi r-cran-dbi 0.3.1-1 install ok installed r-cran-dichromat r-cran-dichromat 2.0.0-3 install ok installed r-cran-digest r-cran-digest 0.6.4-1 install ok installed r-cran-domc r-cran-domc 1.3.3-1 install ok installed r-cran-doparallel r-cran-doparallel 1.0.8-1 install ok installed r-cran-evaluate r-cran-evaluate 0.5.5-1 install ok installed r-cran-fail r-cran-fail 1.2-1 install ok installed r-cran-fastcluster r-cran-fastcluster 1.1.13-1 install ok installed r-cran-foreach r-cran-foreach 1.4.2-1 install ok installed r-cran-foreign r-cran-foreign 0.8.61-1 install ok installed r-cran-formula r-cran-formula 1.1-2-1 install ok installed r-cran-g.data r-cran-g.data 2.4-1 install ok installed r-cran-genabel r-cran-genabel 1.8-0-1 install ok installed r-cran-genabel.data r-cran-genabel.data 1.0.0-1 install ok installed r-cran-getopt r-cran-getopt 1.20.0-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 1.0.0-1 install ok installed r-cran-gtable r-cran-gtable 0.1.2-1.1 install ok installed r-cran-hmisc r-cran-hmisc 3.14-5-1 install ok installed r-cran-hwriter r-cran-hwriter 1.3.2-1 install ok installed r-cran-iterators r-cran-iterators 1.0.7-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-13-1 install ok installed r-cran-labeling r-cran-labeling 0.3-1 install ok installed r-cran-lattice r-cran-lattice 0.20-29-1 install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-26-1 install ok installed r-cran-mapproj r-cran-mapproj 1.2-2-1 install ok installed r-cran-maps r-cran-maps 2.3-7-1 install ok installed r-cran-mass r-cran-mass 7.3-34-1 install ok installed r-cran-matrix r-cran-matrix 1.1-4-1 install ok installed r-cran-matrixstats r-cran-matrixstats 0.10.3-1 install ok installed r-cran-mgcv r-cran-mgcv 1.8-3-1 install ok installed r-cran-multicore r-cran-multicore 0.2-1 install ok installed r-cran-munsell r-cran-munsell 0.4.2-1 install ok installed r-cran-nlme r-cran-nlme 3.1.117-1 install ok installed r-cran-nnet r-cran-nnet 7.3-8-1 install ok installed r-cran-optparse r-cran-optparse 1.2.0-1 install ok installed r-cran-permute r-cran-permute 0.8-3-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.2-1 install ok installed r-cran-plyr r-cran-plyr 1.8.1-2 install ok installed r-cran-proto r-cran-proto 0.3-10-1 install ok installed r-cran-qtl r-cran-qtl 1.33-7-1 install ok installed r-cran-r.methodss3 r-cran-r.methodss3 1.6.1-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.0-5-2 install ok installed r-cran-rcpp r-cran-rcpp 0.11.3-1 install ok installed r-cran-rcurl r-cran-rcurl 1.95-4.3-1+deb8u1 install ok installed r-cran-reshape r-cran-reshape 0.8.5-1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4-1 install ok installed r-cran-rpart r-cran-rpart 4.1-8-1 install ok installed r-cran-rsqlite r-cran-rsqlite 0.11.4-3 install ok installed r-cran-scales r-cran-scales 0.2.4-1 install ok installed r-cran-sendmailr r-cran-sendmailr 1.2-1-1 install ok installed r-cran-sp r-cran-sp 1:1.0-15-1 install ok installed r-cran-spatial r-cran-spatial 7.3-8-1 install ok installed r-cran-stringr r-cran-stringr 0.6.2-2 install ok installed r-cran-survival r-cran-survival 2.37-7-1 install ok installed r-cran-tcltk2 r-cran-tcltk2 1.2-10-1 install ok installed r-cran-testthat r-cran-testthat 0.9.1-1 install ok installed r-cran-vegan r-cran-vegan 2.0-10-1 install ok installed r-cran-xml r-cran-xml 3.98-1.1-1 install ok installed r-doc-html r-doc-html 3.1.1-1+deb8u1 install ok installed r-other-bio3d r-other-bio3d 1.1-5-1 install ok installed r-other-mott-happy.hbrem r-other-mott-happy.hbrem 2.4-1 install ok installed r-recommended r-recommended 3.1.1-1+deb8u1 install ok installed rasmol rasmol 2.7.5.2-2 install ok installed raster3d raster3d 3.0-3-1 install ok installed rate4site rate4site 3.0.0-1 install ok installed raxml raxml 8.1.1-3 install ok installed ray ray 2.3.1-1 install ok installed readline-common readline-common 6.3-8 install ok installed readseq readseq 1-11 install ok installed relion-bin relion-bin 1.3+dfsg-2 install ok installed rename rename 0.20-3 install ok installed reprof reprof 1.0.1-1 install ok installed rnahybrid rnahybrid 2.1.1-2 install ok installed rsync rsync 3.1.1-3 install ok installed rtax rtax 0.984-2 install ok installed ruby ruby 1:2.1.5+deb8u2 install ok installed ruby1.9.1 ruby1.9.1 1.9.3.194-8.1+deb7u5 install ok installed ruby2.1 ruby2.1 2.1.5-2+deb8u3 install ok installed rubygems-integration rubygems-integration 1.8 install ok installed saint saint 2.4.0+dfsg-1 install ok installed samtools samtools 0.1.19-1 install ok installed sane-utils sane-utils 1.0.24-8+deb8u2 install ok installed science-biology science-biology 1.4 install ok installed science-config science-config 1.4 install ok installed science-tasks science-tasks 1.4 install ok installed seaview seaview 1:4.5.3.1-2 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9 install ok installed seqan-apps seqan-apps 1.4.1+dfsg-2 install ok installed seqtk seqtk 1.0-1 install ok installed sgml-base sgml-base 1.26+nmu4 install ok installed shared-mime-info shared-mime-info 1.3-1 install ok installed sibsim4 sibsim4 0.20-2 install ok installed sigma-align sigma-align 1.1.3-3 install ok installed sim4 sim4 0.0.20121010-1 install ok installed smalt smalt 0.7.6-4 install ok installed snap snap 2013-11-29-1 install ok installed snp-sites snp-sites 1.5.0-1 install ok installed soapdenovo soapdenovo 1.05-2 install ok installed soapdenovo2 soapdenovo2 240+dfsg-2 install ok installed sphinx-common sphinx-common 1.2.3+dfsg-1 install ok installed sphinx-doc sphinx-doc 1.2.3+dfsg-1 install ok installed sqlite3 sqlite3 3.8.7.1-1+deb8u2 install ok installed squizz squizz 0.99b+dfsg-3 install ok installed sra-toolkit sra-toolkit 2.3.5-2+dfsg-1 install ok installed sra-toolkit-libs0 sra-toolkit-libs0 2.3.5-2+dfsg-1 install ok installed ssake ssake 3.8.2-1 install ok installed ssl-cert ssl-cert 1.0.35 install ok installed staden staden 2.0.0+b10-1.1 install ok installed staden-common staden-common 2.0.0+b10-1.1 install ok installed staden-io-lib-utils staden-io-lib-utils 1.13.7-1 install ok installed startpar startpar 0.59-3 install ok installed swi-prolog swi-prolog 6.6.6-5 install ok installed swi-prolog-nox swi-prolog-nox 6.6.6-5 install ok installed swi-prolog-x swi-prolog-x 6.6.6-5 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-shim systemd-shim 9-1 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit sysvinit 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed t-coffee t-coffee 11.00.8cbe486-1 install ok installed tabix tabix 1.1-1 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed tasksel tasksel 3.31+deb8u1 install ok installed tasksel-data tasksel-data 3.31+deb8u1 install ok installed tcl tcl 8.6.0+8 install ok installed tcl8.5 tcl8.5 8.5.17-1 install ok installed tcl8.6 tcl8.6 8.6.2+dfsg-2 install ok installed tcllib tcllib 1.16-dfsg-2 install ok installed tcpd tcpd 7.6.q-25 install ok installed tex-common tex-common 5.03 install ok installed tex-gyre tex-gyre 20140520-1 install ok installed texlive-base texlive-base 2014.20141024-2+deb8u1 install ok installed texlive-binaries texlive-binaries 2014.20140926.35254-6 install ok installed texlive-extra-utils texlive-extra-utils 2014.20141024-1 install ok installed texlive-font-utils texlive-font-utils 2014.20141024-1 install ok installed texlive-fonts-extra texlive-fonts-extra 2014.20141024-1 install ok installed texlive-fonts-extra-doc texlive-fonts-extra-doc 2014.20141024-1 install ok installed texlive-fonts-recommended texlive-fonts-recommended 2014.20141024-2+deb8u1 install ok installed texlive-fonts-recommended-doc texlive-fonts-recommended-doc 2014.20141024-2+deb8u1 install ok installed texlive-generic-recommended texlive-generic-recommended 2014.20141024-2+deb8u1 install ok installed texlive-latex-base texlive-latex-base 2014.20141024-2+deb8u1 install ok installed texlive-latex-base-doc texlive-latex-base-doc 2014.20141024-2+deb8u1 install ok installed texlive-latex-extra texlive-latex-extra 2014.20141024-1 install ok installed texlive-latex-extra-doc texlive-latex-extra-doc 2014.20141024-1 install ok installed texlive-latex-recommended texlive-latex-recommended 2014.20141024-2+deb8u1 install ok installed texlive-latex-recommended-doc texlive-latex-recommended-doc 2014.20141024-2+deb8u1 install ok installed texlive-math-extra texlive-math-extra 2014.20141024-1 install ok installed texlive-pictures texlive-pictures 2014.20141024-2+deb8u1 install ok installed texlive-pictures-doc texlive-pictures-doc 2014.20141024-2+deb8u1 install ok installed texlive-pstricks texlive-pstricks 2014.20141024-1 install ok installed texlive-pstricks-doc texlive-pstricks-doc 2014.20141024-1 install ok installed theseus theseus 3.0.0-1 install ok installed tigr-glimmer tigr-glimmer 3.02-3 install ok installed tipa tipa 2:1.3-20 install ok installed tk tk 8.6.0+8 install ok installed tk-table tk-table 2.10-2 install ok installed tk8.5 tk8.5 8.5.17-1 install ok installed tk8.6 tk8.6 8.6.2-1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-1 install ok installed tklib tklib 0.6-1+deb8u1 install ok installed tm-align tm-align 20140601+dfsg-1 install ok installed tophat tophat 2.0.13+dfsg-1 install ok installed topp topp 1.11.1-5 install ok installed transtermhp transtermhp 2.09-2 install ok installed tree-puzzle tree-puzzle 5.2-7+b1 install ok installed tree-puzzle-doc tree-puzzle-doc 5.2-7 install ok installed treeviewx treeviewx 0.5.1+20100823-3 install ok installed trimmomatic trimmomatic 0.32+dfsg-4 install ok installed tsconf tsconf 1.0-11 install ok installed ttf-adf-accanthis ttf-adf-accanthis 0.20090423-2 install ok installed ttf-adf-gillius ttf-adf-gillius 0.20090423-2 install ok installed ttf-adf-universalis ttf-adf-universalis 0.20090423-2 install ok installed ttf-dejavu ttf-dejavu 2.34-1 install ok installed ttf-dejavu-core ttf-dejavu-core 2.34-1 install ok installed ttf-dejavu-extra ttf-dejavu-extra 2.34-1 install ok installed ttf-freefont ttf-freefont 20120503-4 install ok installed ttf-liberation ttf-liberation 1.07.4-1 install ok installed tzdata tzdata 2017c-0+deb8u1 install ok installed tzdata-java tzdata-java 2017c-0+deb8u1 install ok installed uc-echo uc-echo 1.12-7 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed ufraw-batch ufraw-batch 0.20-2+deb8u1 install ok installed unzip unzip 6.0-16+deb8u3 install ok installed update-inetd update-inetd 4.43 install ok installed util-linux util-linux 2.25.2-6 install ok installed vcftools vcftools 0.1.12+dfsg-1 install ok installed velvet velvet 1.2.10+dfsg1-1 install ok installed velvetoptimiser velvetoptimiser 2.2.5-2 install ok installed vprerex vprerex 6.5.3-1 install ok installed wigeon wigeon 20101212+dfsg-1 install ok installed wise wise 2.4.1-17 install ok installed wise-data wise-data 2.4.1-17 install ok installed wwwconfig-common wwwconfig-common 0.2.2 install ok installed x11-common x11-common 1:7.7+7 install ok installed x11-utils x11-utils 7.7+2 install ok installed x11-xserver-utils x11-xserver-utils 7.7+3+b1 install ok installed x11proto-core-dev x11proto-core-dev 7.0.26-1 install ok installed x11proto-input-dev x11proto-input-dev 2.3.1-1 install ok installed x11proto-kb-dev x11proto-kb-dev 1.0.6-2 install ok installed xauth xauth 1:1.0.9-1 install ok installed xbitmaps xbitmaps 1.1.1-2 install ok installed xdg-user-dirs xdg-user-dirs 0.15-2 install ok installed xdg-utils xdg-utils 1.1.0~rc1+git20111210-7.4 install ok installed xkb-data xkb-data 2.12-1 install ok installed xml-core xml-core 0.13+nmu2 install ok installed xorg-sgml-doctools xorg-sgml-doctools 1:1.11-1 install ok installed xsltproc xsltproc 1.1.28-2+deb8u3 install ok installed xterm xterm 312-2 install ok installed xtrans-dev xtrans-dev 1.3.4-1 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2+b3 install ok installed zalign zalign 0.9.1-1+b1 install ok installed zip zip 3.0-8 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.8.dfsg-2+b1 14m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 14m59.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', '-ac', '--ignore-obsolete'] 15m52.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', '-ac', '--ignore-obsolete'] 15m52.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 15m52.8s DUMP: 0.15.1 15m52.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 15m52.8s INFO: Running adequate version 0.15.1 now. 15m52.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'science-biology'] 15m53.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'science-biology'] 15m53.0s INFO: Running scripts pre_remove 15m53.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 15m53.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 15m53.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 15m53.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 15m53.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 18m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 18m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 18m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 18m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 18m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 18m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_remove_exceptions'] 18m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/pre_remove_exceptions'] 18m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', 'remove', 'libsigsegv2:amd64', 'python-scipy', 'python-ballview', 'libelf1:amd64', 'python-pysqlite2', 'libgssapi-krb5-2:amd64', 'libargtable2-0', 'libbio-graphics-perl', 'libnspr4:amd64', 'libmro-compat-perl', 'liblsan0:amd64', 'libxdamage1:amd64', 'libpangocairo-1.0-0:amd64', 'libpq5:amd64', 'cgmanager', 'profnet-md', 'profnet-isis', 'libio-stringy-perl', 'libreadonly-perl', 'fonts-gfs-didot', 'med-bio', 'libgnomevfs2-0:amd64', 'libprocps0:amd64', 'r-bioc-variantannotation', 'xsltproc', 'libbonobo2-common', 'dialign', 'tk-table', 'imagemagick-6.q16', 'libpython3-stdlib:amd64', 'ruby1.9.1', 'libdrm2:amd64', 'libdbd-pg-perl', 'r-cran-getopt', 'libpython-dev:amd64', 'lua-md5:amd64', 'tipa', 'libgraph4', 'libfreehep-graphics2d-java', 'libmoo-perl', 'libcassie1', 'libipc-sharelite-perl', 'libset-scalar-perl', 'libmsv-java', 'ttf-dejavu-extra', 'libxft2:amd64', 'autogrid', 'libatomic1:amd64', 'picard-tools', 'libapr1:amd64', 'ampliconnoise', 'r-cran-munsell', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'bioperl', 'libgetopt-simple-perl', 'libgirepository-1.0-1:amd64', 'libdigest-perl-md5-perl', 'reprof', 'libgtk2.0-0:amd64', 'dconf-service', 'libdb5.1:amd64', 'libbonobo2-0:amd64', 'populations', 'tzdata-java', 'gnustep-base-common', 'intltool-debian', 'libbackport-util-concurrent-java', 'libvibrant6a:amd64', 'libtsan0:amd64', 'disulfinder', 'mpi-default-bin', 'libcairo2:amd64', 'perl-doc', 'r-bioc-bsgenome', 'openjdk-7-jre:amd64', 'seqan-apps', 'python-pexpect', 'mlv-smile', 'fastlink', 'libmodule-runtime-perl', 'njplot', 'libxslt1.1:amd64', 'hhsuite', 'libjsch-java', 'libpotrace0', 'fonts-gfs-artemisia', 'libgraphics-colorobject-perl', 'libmultidimensional-perl', 'bamtools', 'libidn11:amd64', 'bowtie2', 'libkrb5support0:amd64', 'fonts-sil-gentium-basic', 'libglpk36:amd64', 'ncoils', 'libjson-glib-1.0-common', 'python-support', 'fonts-freefont-ttf', 'libbio-scf-perl', 'texlive-latex-extra-doc', 'mysql-server', 'libnettle4:amd64', 'tex-gyre', 'libdrm-nouveau1a:amd64', 'libjcommon-java', 'python3-pkg-resources', 'libmpc3:amd64', 'libio-html-perl', 'libpython2.7:amd64', 'gnome-mime-data', 'python-egenix-mxdatetime', 'gnuplot-nox', 'glpk-utils', 'libp11-kit0:amd64', 'python-gdata', 'libblas3', 'r-cran-maps', 'bzip2-doc', 'libgomp1:amd64', 'rnahybrid', 'libcommons-discovery-java', 'libboost-date-time1.55.0:amd64', 'cpp-4.9', 'libjson0:amd64', 'openmpi-common', 'texlive-pictures-doc', 'ballview', 'dconf-gsettings-backend:amd64', 'gnustep-gui-runtime', 'libcommons-jexl2-java', 'velvet', 'gromacs', 'libcommons-collections-java', 'libdrm-nouveau2:amd64', 'fonts-cmu', 'icedtea-6-jre-cacao:amd64', 'fonts-cabin', 'libsane:amd64', 'libopengl-perl', 'liblcms1:amd64', 'r-cran-sendmailr', 'idba', 'liblensfun0', 'liblzo2-2:amd64', 'openssl', 'r-bioc-biostrings', 'prodigal', 'libmail-java', 'libhwloc-plugins', 'fonts-crosextra-caladea', 'libpcrecpp0:amd64', 'libgusb2:amd64', 'python-pyfits', 'libxml-simple-perl', 'r-cran-codetools', 'python-sphinx', 'libconfig-inifiles-perl', 'lua-lpeg:amd64', 'liblcms2-2:amd64', 'python-renderpm:amd64', 'gnustep-base-runtime', 'gnuplot-tex', 'embassy-domainatrix', 'libqt4-xmlpatterns:amd64', 'clustalw', 'libcsiro0:amd64', 'libopenjpeg5:amd64', 'phyml', 'liborc-0.4-0:amd64', 'clustalo', 'python-chardet', 'libb-hooks-endofscope-perl', 'libglapi-mesa:amd64', 'libqtwebkit4:amd64', 'libglade2-0:amd64', 'libcurl3:amd64', 'ray', 'libhsqldb-java', 'x11proto-kb-dev', 'librelion-1.3-1:amd64', 'openmpi-checkpoint', 'gff2aplot', 'libboost-regex1.55.0:amd64', 'python-multipletau', 'java-wrappers', 'libhwloc5:amd64', 'libfreehep-graphicsio-svg-java', 'exonerate', 'qiime-data', 'isc-dhcp-client', 'amap-align', 'libcdparanoia0:amd64', 'libfreehep-graphicsio-java', 'libvte-common', 'libdata-dumper-simple-perl', 'colord', 'r-cran-dichromat', 'biosquid', 'mysql-common', 'soapdenovo', 'libterm-ui-perl', 'libfreehep-swing-java', 'libgmp10:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'menu', 'r-cran-rpart', 'libgdbm3:amd64', 'dotur', 'libcurl3-gnutls:amd64', 'libxcb-dri3-0:amd64', 'tabix', 'python-glade2', 'flexbar', 'libxinerama1:amd64', 'r-bioc-xvector', 'libglib2.0-0:amd64', 'libusb-1.0-0:amd64', 'libbsd0:amd64', 'patch', 'r-cran-matrixstats', 'maqview', 'libaspell15:amd64', 'libxerces-c3.1:amd64', 'apache2-utils', 'libgtextutils0:amd64', 'libossp-uuid-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'fonts-gfs-solomos', 'libllvm3.5:amd64', 'probabel', 'libmath-random-mt-perl', 'emboss-lib', 'lesstif2:amd64', 'libswitch-perl', 'anfo', 'sigma-align', 'qiime', 'profnet-con', 'r-cran-g.data', 'libio-sessiondata-perl', 'ant-contrib', 'libunwind8', 'libsm-dev:amd64', 'libanyevent-cachedns-perl', 'libhtml-parser-perl', 'libjson-glib-1.0-0:amd64', 'libdata-stag-perl', 'binfmt-support', 'libxcb-sync1:amd64', 'libcanberra0:amd64', 'phylip', 'libaudio2:amd64', 'r-cran-testthat', 'circos-tools', 'perl-tk', 'pyscanfcs', 'conservation-code', 'mrbayes', 'libjgoodies-common-java', 'python-wxgtk3.0', 'libmath-bezier-perl', 'libboost-date-time1.49.0', 'libfontconfig1:amd64', 'libxml-dom-xpath-perl', 'libfile-fcntllock-perl', 'netbase', 'figtree', 'libxcb-glx0:amd64', 'libpod-latex-perl', 'apache2-data', 'profbval', 'libspreadsheet-writeexcel-perl', 'liblwp-mediatypes-perl', 'r-bioc-cummerbund', 'libxt6:amd64', 'libijs-0.35:amd64', 'freeglut3:amd64', 'r-bioc-genomicalignments', 'zlib1g-dev:amd64', 'libxml-sax-writer-perl', 'libglew1.10:amd64', 'libasprintf0c2:amd64', 'libsctp1:amd64', 'samtools', 'make', 'libjets3t-java', 'libopenbabel4', 'libjswingreader-java', 'concavity', 'libxaw7:amd64', 'libsasl2-modules-db:amd64', 'perlprimer', 'topp', 'libpaper1:amd64', 'garlic', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'jmol', 'ca-certificates', 'librsvg2-2:amd64', 'libdbi-perl', 'fonts-gfs-neohellenic', 'clonalframe', 'librg-reprof-bundle-perl', 'pynast', 'libfftw3-single3:amd64', 'python-roman', 'r-cran-mapproj', 'fonts-ebgaramond-extra', 'libtext-soundex-perl', 'gromacs-data', 'melting', 'libgnome-2-0:amd64', 'xbitmaps', 'libavahi-client3:amd64', 'libelk0', 'r-cran-formula', 'libxi6:amd64', 'rasmol', 'pycorrfit', 'libtree-dagnode-perl', 'libset-intspan-perl', 'tigr-glimmer', 'norsp', 'junit4', 'libball1.4', 'libwxgtk2.8-0:amd64', 'fonts-stix', 'openssh-client', 'giira', 'libprotobuf9:amd64', 'libquadmath0:amd64', 'libcolamd2.8.0:amd64', 'libsqlite3-0:amd64', 'openjdk-7-jdk:amd64', 'dialign-tx', 'libxml-twig-perl', 'libjson-c2:amd64', 'libcommons-pool-java', 'tasksel', 'libxau6:amd64', 'libfile-which-perl', 'libxcomposite1:amd64', 'discosnp', 'libpthread-stubs0:amd64', 'libgs9', 'libatk-bridge2.0-0:amd64', 'libapache-pom-java', 'libxml-perl', 'libsys-hostname-long-perl', 'libpython2.7-dev:amd64', 'python-reportlab-accel:amd64', 'ruby2.1', 'cdbs', 'update-inetd', 'libjbig0:amd64', 'libjsoncpp0', 'libxml-commons-resolver1.1-java', 'librole-tiny-perl', 'cdbfasta', 'libcache-cache-perl', 'libxcursor1:amd64', 'libbiojava-java', 'ttf-freefont', 'libgtk-3-bin', 'libalgorithm-diff-perl', 'libtre5:amd64', 'jmol-applet', 'r-cran-rcurl', 'ifupdown', 'texlive-fonts-extra-doc', 'fonts-lobstertwo', 'libyaml-syck-perl', 'mknfonts.tool', 'r-bioc-rtracklayer', 'libsynctex1', 'r-cran-domc', 'libnih-dbus1', 'libreadline6-dev:amd64', 'libboost-regex1.49.0', 'libvorbisenc2:amd64', 'libxcb-dri2-0:amd64', 'acedb-other', 'libvisual-0.4-0:amd64', 'libbsd-resource-perl', 'aragorn', 'libdbd-mysql-perl', 'libsort-naturally-perl', 'libogg0:amd64', 'libcdt5', 'libcdt4', 'r-cran-bitops', 'r-cran-gtable', 'r-cran-abind', 'sibsim4', 'libv4l-0:amd64', 'texlive-latex-base-doc', 'libpcre3-dev:amd64', 'libproj0', 'libjzlib-java', 'librg-utils-perl', 'python3.4-minimal', 'wise-data', 'libgstreamer1.0-0:amd64', 'libtext-template-perl', 'ufraw-batch', 'hmmer2', 'libmysql-java', 'python-qcli', 'ghostscript', 'apbs', 'libzzip-0-13:amd64', 'libxml-sax-perl', 'libasan1:amd64', 'r-cran-sp', 'libsvm3', 'libcgi-session-perl', 'libalgorithm-munkres-perl', 'libbio-perl-perl', 'r-cran-mass', 'libperl4-corelibs-perl', 'libxml-dom-perl', 'libgsl0ldbl', 'ncbi-tools-x11', 'mafft', 'libgettextpo0:amd64', 'libfreecontact0', 'libcrypt-ssleay-perl', 'libfltk-images1.3:amd64', 'gawk', 'libjbzip2-java', 'libgmp-dev:amd64', 'libboost-iostreams1.49.0', 'ltrsift', 'fonts-texgyre', 'libruby2.1:amd64', 'librtmp0:amd64', 'python-pysam', 'libhtml-tagset-perl', 'libbcpkix-java', 'libxmlrpc-lite-perl', 'texlive-binaries', 'jalview', 'proalign', 'ant-optional', 'libsvg-perl', 'libclass-isa-perl', 'x11-xserver-utils', 'libfann2:amd64', 'libnamespace-clean-perl', 'perm', 'perl', 'libflite1:amd64', 'emacsen-common', 'libtasn1-6:amd64', 'libjpeg8-dev:amd64', 'libbcmail-java', 'libhamcrest-java', 'ksh', 'libpython-all-dev:amd64', 'swi-prolog-nox', 'libopenms1.11', 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'at-spi2-core', 'bwa', 'libatm1:amd64', 'dialign-tx-data', 'libxrandr2:amd64', 'predictprotein', 'libhmsbeagle1', 'libanyevent-http-perl', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'glib-networking:amd64', 'libtheora0:amd64', 'prank', 'r-cran-ggplot2', 'python-mysqldb', 'libcastor-core-java', 'med-config', 'icedtea-6-jre-jamvm:amd64', 'libxss1:amd64', 'python-mock', 'mapsembler2', 'libgmpxx4ldbl:amd64', 'libmpc2:amd64', 'sane-utils', 'libavahi-glib1:amd64', 'psutils', 'fonts-junicode', 'libdevel-partialdump-perl', 'libisccfg-export90', 'python-mako', 'libproxy1:amd64', 'profphd-utils', 'libboost-iostreams1.55.0:amd64', 'openjdk-6-jre:amd64', 'gentle', 'libcarp-clan-perl', 'libjcode-pm-perl', 'libboost-math1.55.0:amd64', 'python-htseq', 'chimeraslayer', 'libhdf5-8:amd64', 'ncbi-epcr', 'python-mpmath', 'science-tasks', 'libcanberra-gtk3-0:amd64', 'libatspi2.0-0:amd64', 'r-cran-rsqlite', 'python-gtk2', 'libtdb1:amd64', 'libtamuanova-0.2', 'libbio-perl-run-perl', 'python-mpi4py', 'libgdk-pixbuf2.0-common', 'libnuma1:amd64', 'ttf-adf-universalis', 'libgeronimo-jta-1.1-spec-java', 'linux-libc-dev:amd64', 'libparams-util-perl', 'libcastor-xml-java', 'gnuplot-data', 'python-nose', 'freecontact', 'apache2.2-bin', 'lynx-cur', 'libfont-ttf-perl', 'grinder', 'libyaml-0-2:amd64', 'libtinfo-dev:amd64', 'python-gobject-2', 'infernal', 'libalgorithm-c3-perl', 'zalign', 'lksctp-tools', 'libfftw3-double3:amd64', 'libpthread-stubs0-dev:amd64', 'sgml-base', 'libgnome2-bin', 'libcommons-logging-java', 'liblexical-sealrequirehints-perl', 'libboost-chrono1.55.0:amd64', 'libisorelax-java', 'gnustep-back-common', 'libmath-round-perl', 'libasprintf-dev:amd64', 'libtcl8.6:amd64', 'libdevel-lexalias-perl', 'r-cran-dbi', 'libjpeg8:amd64', 'bsdmainutils', 'groff-base', 'glib-networking-common', 'libqt4-sql-mysql:amd64', 'libgphoto2-l10n', 'libtype-tiny-xs-perl', 'g++', 'aglfn', 'libxmuu1:amd64', 'qtcore4-l10n', 'libpolkit-gobject-1-0:amd64', 'squizz', 'libheap-perl', 'libmaloc1', 'libpango1.0-0:amd64', 'libjs-jquery-ui', 'seaview', 'plasmidomics', 'libharfbuzz0b:amd64', 'r-cran-kernsmooth', 'libbit-vector-perl', 'libxcb-present0:amd64', 'neobio', 'libpangox-1.0-0:amd64', 'openjdk-6-jre-headless:amd64', 'libdevel-globaldestruction-perl', 'glib-networking-services', 'libsub-identify-perl', 'lmodern', 'libjson-perl', 'r-doc-html', 'libpaper-utils', 'libservlet2.5-java', 'heirloom-mailx', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'metastudent-data', 'ttf-dejavu-core', 'libmng1:amd64', 'libpod-coverage-perl', 'fastdnaml', 'rename', 'libsub-exporter-progressive-perl', 'libqt4-network:amd64', 'libgnustep-gui0.24', 'libgnustep-gui0.20', 'libkpathsea6', 'libindirect-perl', 'libbz2-dev:amd64', 'libjbig2dec0', 'libtiff4:amd64', 'python', 'libboost-mpi1.55.0', 'libgnumail-java', 'libpango-1.0-0:amd64', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'python-six', 'libsoup-gnome2.4-1:amd64', 'embassy-domsearch', 'tk8.6-blt2.5', 'r-cran-labeling', 'libtablelayout-java', 'libjson-xs-perl', 'r-cran-lattice', 'muscle', 'libexporter-tiny-perl', 'laptop-detect', 'texlive-pstricks-doc', 'tcl', 'libmailtools-perl', 'swi-prolog-x', 'kissplice', 'metastudent', 'libmodule-build-perl', 'libpulse0:amd64', 'libsc7', 'fonts-lato', 'libc6-dev:amd64', 'r-cran-genabel', 'ttf-adf-accanthis', 'libgfortran-4.9-dev:amd64', 'libbareword-filehandles-perl', 'r-bioc-genomicfeatures', 'libmpdec2:amd64', 'libpng12-0:amd64', 'r-bioc-biobase', 'tcl8.6', 'python3', 'libpython-stdlib:amd64', 'libsystemd-login0:amd64', 'libedit2:amd64', 'r-cran-fastcluster', 'docutils-common', 'liblog-message-simple-perl', 'shared-mime-info', 'libsoap-lite-perl', 'ncbi-seg', 'javahelp2', 'seqtk', 'libcgmanager0:amd64', 'texlive-pictures', 'libsndfile1:amd64', 'phyutility', 'tk', 'libclass-tiny-perl', 'libxdmcp6:amd64', 'libasound2:amd64', 'probcons', 'libcommons-cli-java', 'r-cran-pkgkitten', 'libghemical-data', 'librtmp1:amd64', 'r-cran-survival', 'genometools-common', 'xml-core', 'r-cran-chron', 'libgphoto2-6:amd64', 'plink', 'libjebl2-java', 'libmagickcore5:amd64', 'libxv1:amd64', 'mira-assembler', 'gfortran-4.9', 'x11-common', 'groff', 'r-cran-checkmate', 'libxau-dev:amd64', 'libruby1.9.1', 'libcommons-io-java', 'libtask-weaken-perl', 'libglew1.7:amd64', 'wise', 'lynx', 'libio-string-perl', 'python-pmw', 'libx11-data', 'libgnujaf-java', 'libaprutil1:amd64', 'gamgi', 'libxml-xpath-perl', 'libmldbm-perl', 'bzip2', 'r-bioc-biocgenerics', 'libx11-protocol-perl', 'libtest-pod-perl', 'libxfixes3:amd64', 'libplplot11', 'dpkg-dev', 'libcommons-net1-java', 'libconvert-binary-c-perl', 'libsprng2', 'libtcmalloc-minimal4', 'libmodule-implementation-perl', 'libjaxme-java', 'libboost-thread1.49.0', 'libxml-writer-perl', 'science-biology'] 20m13.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libgvc5' is not installed, so not removed Package 'libghemical5' is not installed, so not removed Package 'libopenmpi1.3' is not installed, so not removed Package 'libvibrant6a' is not installed, so not removed Package 'ghemical' is not installed, so not removed The following packages will be REMOVED: abacas acedb-other acedb-other-belvu acedb-other-dotter adun.app adwaita-icon-theme aevol aglfn alien-hunter altree amap-align ampliconnoise anfo ant ant-contrib ant-optional apache2 apache2-bin apache2-data apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common apbs aragorn arden aspell aspell-en at-spi2-core autodock autodock-vina autogrid autopoint autotools-dev ballview bamtools bauble bc bedtools binfmt-support binutils biomaj bioperl bioperl-run biosquid blast2 blcr-util blends-common blt bowtie bowtie2 boxshade bsdmainutils build-essential bwa bzip2 bzip2-doc ca-certificates ca-certificates-java cassiopee cd-hit cdbfasta cdbs cgmanager chimeraslayer circos circos-tools clearcut clonalframe clustalo clustalw clustalx colord colord-data concavity conservation-code cpp cpp-4.9 critterding curl cython dbus-x11 dconf-gsettings-backend dconf-service debhelper default-jre default-jre-headless dh-python dialign dialign-tx dialign-tx-data dictionaries-common discosnp disulfinder disulfinder-data dmidecode dnaclust docutils-common docutils-doc dotur dpkg-dev dssp dvipng edtsurf emacsen-common embassy-domainatrix embassy-domalign embassy-domsearch emboss emboss-data emboss-lib exonerate fakeroot fastaq fastdnaml fastjar fastlink fastqc fasttree fastx-toolkit ffindex fftw2 figtree file filo fitgcp flexbar fontconfig fontconfig-config fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu fonts-dejavu-core fonts-dejavu-extra fonts-droid fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-oflb-asana-math fonts-sil-gentium fonts-sil-gentium-basic fonts-stix fonts-texgyre freecontact freeglut3 g++ g++-4.9 gamgi garlic gasic gawk gbrowse gcc gcc-4.9 gconf-service gconf2 gconf2-common gdpc genometools genometools-common gentle gettext gettext-base gff2aplot gff2ps gfortran gfortran-4.9 ghostscript giira gir1.2-glib-2.0 glam2 glib-networking glib-networking-common glib-networking-services glpk-utils gnome-mime-data gnuplot gnuplot-data gnuplot-nox gnuplot-tex gnustep-back-common gnustep-back0.20 gnustep-back0.20-art gnustep-back0.24 gnustep-back0.24-cairo gnustep-base-common gnustep-base-runtime gnustep-common gnustep-gui-common gnustep-gui-runtime graphviz grinder groff groff-base gromacs gromacs-data gsettings-desktop-schemas gsfonts gstreamer1.0-plugins-base heirloom-mailx 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libcofoja-java libcolamd2.8.0 libcolord2 libcolorhug2 libcommon-sense-perl libcommons-cli-java libcommons-codec-java libcommons-collections-java libcommons-collections3-java libcommons-compress-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-logging-java libcommons-math3-java libcommons-net1-java libcommons-net2-java libcommons-parent-java libcommons-pool-java libconfig-general-perl libconfig-inifiles-perl libconvert-binary-c-perl libconvert-binhex-perl libcpan-meta-perl libcqrlib2 libcr0 libcroco3 libcrypt-rc4-perl libcrypt-ssleay-perl libcsiro0 libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl3-gnutls libcvector2 libdata-dumper-simple-perl libdata-optlist-perl libdata-section-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdb5.1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-glib-1-2 libdconf1 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-partialdump-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdirectfb-1.2-9 libdist-checkconflicts-perl libdjvulibre-text libdjvulibre21 libdns-export100 libdom4j-java libdpkg-perl libdrm-intel1 libdrm-nouveau1a libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libelfg0 libelk0 libencode-locale-perl liberror-perl libev-perl libeval-closure-perl libexif12 libexiv2-12 libexiv2-13 libexpat1-dev libexporter-tiny-perl libfakeroot libfann2 libfcgi-perl libffi5 libffi6 libffindex0 libfftw3-3 libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-basedir-perl libfile-chdir-perl libfile-copy-recursive-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-homedir-perl libfile-listing-perl libfile-mimeinfo-perl libfile-slurp-tiny-perl libfile-which-perl libflac8 libflite1 libfltk-images1.3 libfltk1.3 libfont-afm-perl libfont-ttf-perl libfontconfig1 libfontenc1 libfreecontact0 libfreehep-export-java libfreehep-graphics2d-java libfreehep-graphicsio-emf-java libfreehep-graphicsio-java libfreehep-graphicsio-pdf-java libfreehep-graphicsio-ps-java libfreehep-graphicsio-svg-java libfreehep-graphicsio-swf-java libfreehep-graphicsio-tests-java libfreehep-io-java libfreehep-swing-java libfreehep-util-java libfreehep-xml-java libfreetype6 libfreezethaw-perl libftgl2 libg20 libgcc-4.9-dev libgcj-common libgconf-2-4 libgconf2-4 libgcrypt11 libgd-graph-perl libgd-perl libgd-svg-perl libgd-text-perl libgd2-xpm libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgenometools0 libgeronimo-jta-1.1-spec-java libgetopt-euclid-perl libgetopt-simple-perl libgettextpo-dev libgettextpo0 libgflags2 libgfortran-4.9-dev libgfortran3 libghemical-data libgif4 libgirepository-1.0-1 libgl1-mesa-dri libgl1-mesa-glx libglade2-0 libglapi-mesa libglew1.10 libglew1.7 libglib2.0-0 libglib2.0-data libglpk-java libglpk36 libglu1-mesa libgmp-dev libgmp10 libgmpxx4ldbl 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libv4lconvert0 libvamsas-client-java libvariable-magic-perl libvibrant6b libvisual-0.4-0 libvisual-0.4-plugins libvm-ec2-perl libvorbis0a libvorbisenc2 libvorbisfile3 libvpx1 libvte-common libvte9 libwayland-client0 libwayland-cursor0 libwebp5 libwebpdemux1 libwebpmux1 libwmf0.2-7 libwrap0 libwsdl4j-java libwww-perl libwww-robotrules-perl libwxbase2.8-0 libwxbase3.0-0 libwxgtk2.8-0 libwxgtk3.0-0 libx11-6 libx11-data libx11-dev libx11-doc libx11-protocol-perl libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxdot4 libxerces-c3.1 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxm4 libxml-checker-perl libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxom-java libxp6 libxpm4 libxpp2-java libxpp3-java libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt-dev libxt6 libxtables10 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-perl libyaml-syck-perl libyaml-tiny-perl libzeep3.0 libzzip-0-13 linux-libc-dev littler lksctp-tools lmodern logol-bin loki ltrsift lua-filesystem lua-lpeg lua-md5 lynx lynx-cur macs mafft make man-db manpages manpages-dev mapsembler2 maq maqview massxpert massxpert-data med-bio med-config med-tasks melting menu metastudent metastudent-data metastudent-data-2 microbiomeutil microbiomeutil-data mime-support minia mipe mira-assembler mknfonts.tool mlv-smile mothur mpi-default-bin mpqc mrbayes mrs mummer muscle mustang mysql-client-5.5 mysql-common mysql-server mysql-server-5.5 mysql-server-core-5.5 nast-ier ncbi-blast+ ncbi-data ncbi-epcr ncbi-seg ncbi-tools-bin ncbi-tools-x11 ncoils neobio netbase netpbm njplot norsnet norsp notification-daemon ocl-icd-libopencl1 openjdk-6-jdk openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless openmpi-bin openmpi-checkpoint openmpi-common openms openms-common openssh-client openssl paraclu parsinsert patch pdb2pqr pdl perl perl-doc perl-modules perl-tk perlprimer perm phylip phyml phyutility picard-tools plasmidomics plink po-debconf poa policykit-1 poppler-data populations pp-popularity-contest prank predictnls predictprotein prerex preview-latex-style prime-phylo primer3 proalign probabel probalign probcons proda prodigal profbval profisis profnet-bval profnet-chop profnet-con profnet-isis profnet-md profnet-norsnet profnet-prof profnet-snapfun profphd profphd-net profphd-utils proftmb proj-data prosper ps2eps psutils pvm pycorrfit pymol pynast pyqi pyscanfcs python python-all python-all-dev python-ball python-ballview python-biom-format python-biopython python-biopython-doc python-cairo python-chardet python-cogent python-crypto python-dateutil python-decorator python-dev python-docutils python-egenix-mxdatetime python-egenix-mxtools python-gdata python-gi python-glade2 python-gmpy python-gobject python-gobject-2 python-gtk2 python-h5py python-htseq python-imaging python-jinja2 python-lxml python-mako python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-mock python-mpi4py python-mpmath python-multipletau python-mysqldb python-nose python-numpy python-pexpect python-pil python-pkg-resources python-pmw python-pyfits python-pyglet python-pygments python-pyparsing python-pyrex python-pysam python-pysqlite2 python-qcli python-renderpm python-reportlab python-reportlab-accel python-roman python-scipy python-simplegeneric python-sip python-six python-sphinx python-sqlalchemy python-sqlalchemy-ext python-support python-sympy python-tk python-tz python-wxgtk3.0 python-wxversion python-yaml python2.7 python2.7-dev python2.7-minimal python3 python3-minimal python3-nose python3-pkg-resources python3.4 python3.4-minimal qiime qiime-data qtcore4-l10n r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-hilbertvis r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-shortread r-bioc-variantannotation r-bioc-xvector r-cran-abind r-cran-ape r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-boot r-cran-brew r-cran-checkmate r-cran-chron r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-dbi r-cran-dichromat r-cran-digest r-cran-domc r-cran-doparallel r-cran-evaluate r-cran-fail r-cran-fastcluster r-cran-foreach r-cran-foreign r-cran-formula r-cran-g.data r-cran-genabel r-cran-genabel.data r-cran-getopt r-cran-ggplot2 r-cran-gtable r-cran-hmisc r-cran-hwriter r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-mapproj r-cran-maps r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-multicore r-cran-munsell r-cran-nlme r-cran-nnet r-cran-optparse r-cran-permute r-cran-pkgkitten r-cran-plyr r-cran-proto r-cran-qtl r-cran-r.methodss3 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-sendmailr r-cran-sp r-cran-spatial r-cran-stringr r-cran-survival r-cran-tcltk2 r-cran-testthat r-cran-vegan r-cran-xml r-doc-html r-other-bio3d r-other-mott-happy.hbrem r-recommended rasmol raster3d rate4site raxml ray readseq relion-bin rename reprof rnahybrid rsync rtax ruby ruby1.9.1 ruby2.1 rubygems-integration saint samtools sane-utils science-biology science-config science-tasks seaview seqan-apps seqtk sgml-base shared-mime-info sibsim4 sigma-align sim4 smalt snap snp-sites soapdenovo soapdenovo2 sphinx-common sphinx-doc sqlite3 squizz sra-toolkit sra-toolkit-libs0 ssake ssl-cert staden staden-common staden-io-lib-utils swi-prolog swi-prolog-nox swi-prolog-x systemd-shim t-coffee tabix tasksel tasksel-data tcl tcl8.5 tcl8.6 tcllib tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-math-extra texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc theseus tigr-glimmer tipa tk tk-table tk8.5 tk8.6 tk8.6-blt2.5 tklib tm-align tophat topp transtermhp tree-puzzle tree-puzzle-doc treeviewx trimmomatic tsconf ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis ttf-dejavu ttf-dejavu-core ttf-dejavu-extra ttf-freefont ttf-liberation tzdata-java uc-echo ufraw-batch unzip update-inetd vcftools velvet velvetoptimiser vprerex wigeon wise wise-data wwwconfig-common x11-common x11-utils x11-xserver-utils x11proto-core-dev x11proto-input-dev x11proto-kb-dev xauth xbitmaps xdg-user-dirs xdg-utils xkb-data xml-core xorg-sgml-doctools xsltproc xterm xtrans-dev zalign zip zlib1g-dev 0 upgraded, 0 newly installed, 1591 to remove and 0 not upgraded. After this operation, 6257 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 169544 files and directories currently installed.) Removing abacas (1.3.1-2) ... Removing acedb-other (4.9.39+dfsg.01-5) ... Removing acedb-other-belvu (4.9.39+dfsg.01-5) ... Removing acedb-other-dotter (4.9.39+dfsg.01-5) ... Removing adun.app (0.81-6+b1) ... Removing notification-daemon (0.7.6-2) ... Removing aevol (4.4-1) ... Removing gnuplot (4.6.6-2) ... 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Removing massxpert (3.4.1-1) ... Removing libqt4-svg:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing pycorrfit (0.8.3-2) ... Removing python-wxgtk3.0 (3.0.1.1+dfsg-2) ... Removing libmagickcore5-extra:amd64 (8:6.7.7.10-5+deb7u4) ... Removing libmagickwand5:amd64 (8:6.7.7.10-5+deb7u4) ... Removing libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Removing texlive-fonts-extra (2014.20141024-1) ... Removing fonts-cabin (1.5-2) ... Removing fonts-circos-symbols (0.66-1) ... Removing fonts-cmu (0.7.0-3) ... Removing fonts-comfortaa (2.003-1) ... Removing fonts-crosextra-caladea (20130214-1) ... Removing fonts-crosextra-carlito (20130920-1) ... Removing gamgi (0.17.1-1) ... Removing ttf-dejavu (2.34-1) ... Removing fonts-dejavu (2.34-1) ... Removing ttf-dejavu-core (2.34-1) ... Removing ttf-dejavu-extra (2.34-1) ... Removing fonts-dejavu-extra (2.34-1) ... Removing fonts-dejavu-core (2.34-1) ... Removing fonts-droid (1:4.4.4r2-6) ... Removing fonts-ebgaramond (0.015+git20130628-3) ... Removing fonts-ebgaramond-extra (0.015+git20130628-3) ... Removing fonts-font-awesome (4.2.0~dfsg-1) ... Removing fonts-freefont-otf (20120503-4) ... Removing gnustep-back0.20 (0.20.1-2.1) ... Removing gnustep-back0.20-art (0.20.1-2.1) ... Removing gnustep-back0.24 (0.24.0-4) ... Removing gnustep-back0.24-cairo (0.24.0-4) ... Removing gnustep-back-common (0.24.0-4) ... Removing ttf-freefont (20120503-4) ... Removing fonts-freefont-ttf (20120503-4) ... Removing fonts-gfs-artemisia (1.1-5) ... Removing fonts-gfs-complutum (1.1-6) ... Removing fonts-gfs-didot (1.1-6) ... Removing fonts-gfs-neohellenic (1.1-6) ... Removing fonts-gfs-olga (1.1-5) ... Removing fonts-gfs-solomos (1.1-5) ... Removing fonts-inconsolata (001.010-5) ... Removing fonts-junicode (0.7.8-2) ... Removing fonts-lato (2.0-1) ... Removing ttf-liberation (1.07.4-1) ... Removing fonts-linuxlibertine (5.3.0-2) ... Removing lmodern (2.004.4-5) ... Removing fonts-lmodern (2.004.4-5) ... Removing fonts-lobstertwo (2.0-2) ... Removing fonts-lobster (2.0-2) ... Removing python-matplotlib (1.4.2-3.1) ... Removing python-matplotlib-data (1.4.2-3.1) ... Removing fonts-lyx (2.1.2-2) ... Removing fonts-oflb-asana-math (000.907-6) ... Removing fonts-sil-gentium (20081126:1.02-13) ... Removing fonts-sil-gentium-basic (1.1-7) ... Removing fonts-stix (1.1.1-1) ... Removing fonts-texgyre (20140520-1) ... Removing freecontact (1.0.21-3+b1) ... Removing maqview (0.2.5-6) ... Removing libopengl-perl (0.6703+dfsg-1+b1) ... Removing freeglut3:amd64 (2.8.1-2) ... Removing g++-4.9 (4.9.2-10) ... Removing garlic (1.6-1.1) ... Removing mummer (3.23~dfsg-2) ... Removing gff2ps (0.98d-4) ... Removing gawk (1:4.1.1+dfsg-1) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing libgnomevfs2-0:amd64 (1:2.24.4-6+b1) ... Removing libgconf2-4:amd64 (3.2.6-3) ... Removing gdpc (2.2.5-3) ... Removing genometools (1.5.3-2) ... Removing ltrsift (1.0.2-1) ... Removing libgenometools0 (1.5.3-2) ... Removing genometools-common (1.5.3-2) ... Removing gentle (1.9+cvs20100605+dfsg1-3) ... Removing po-debconf (1.0.16+nmu3) ... Removing intltool-debian (0.35.0+20060710.1) ... Removing gettext (0.19.3-2) ... Removing gettext-base (0.19.3-2) ... Removing gff2aplot (2.0-7) ... Removing gfortran-4.9 (4.9.2-10) ... Removing raster3d (3.0-3-1) ... Removing ps2eps (1.68+binaryfree-1) ... Removing python-gobject (3.14.0-1) ... Removing python-gi (3.14.0-1) ... Removing gir1.2-glib-2.0:amd64 (1.42.0-2.2) ... Removing glam2 (1064-3) ... Removing glpk-utils (4.55-1) ... Removing gnuplot-tex (4.6.6-2) ... Removing libgnustep-gui0.20 (0.20.0-3+b1) ... Removing libgnustep-base1.22 (1.22.1-4+deb7u1) ... Removing gnustep-gui-runtime (0.24.0-3) ... Removing libgnustep-gui0.24 (0.24.0-3) ... Removing gnustep-gui-common (0.24.0-3) ... Removing mknfonts.tool (0.5-11+b4) ... Removing gnustep-base-runtime (1.24.7-1) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing libgnustep-base1.24 (1.24.7-1) ... Removing metastudent (1.0.11-2) ... Removing libgo-perl (0.15-1) ... Removing libgraphviz-perl (2.16-1) ... Removing graphviz (2.38.0-7) ... Removing grinder (0.5.3-3) ... Removing groff (1.22.2-8) ... Removing groff-base (1.22.2-8) ... Removing gromacs (5.0.2-1) ... Removing gromacs-data (5.0.2-1) ... Removing python-renderpm:amd64 (3.1.8-3+deb8u1) ... Removing gstreamer1.0-plugins-base:amd64 (1.4.4-2+deb8u1) ... Removing heirloom-mailx (12.5-4) ... Removing hhsuite-data (2.0.16-5) ... Removing imagemagick (8:6.8.9.9-5+deb8u11) ... Removing imagemagick-6.q16 (8:6.8.9.9-5+deb8u11) ... Removing hmmer (3.1b1-3) ... Removing hmmer2 (2.3.2-8) ... Removing icedtea-6-jre-cacao:amd64 (6b38-1.13.10-1~deb7u1) ... Removing icedtea-netx:amd64 (1.5.3-1) ... update-alternatives: warning: forcing reinstallation of alternative /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings because link group itweb-settings is broken update-alternatives: warning: not replacing /usr/share/man/man1/itweb-settings.1.gz with a link Removing icedtea-netx-common (1.5.3-1) ... Removing idba (1.1.2-1) ... Removing ifupdown (0.7.53.1) ... Removing libmagickcore5:amd64 (8:6.7.7.10-5+deb7u4) ... Removing libmagickcore-6.q16-2-extra:amd64 (8:6.8.9.9-5+deb8u11) ... Removing libmagickwand-6.q16-2:amd64 (8:6.8.9.9-5+deb8u11) ... Removing infernal (1.1.1-2) ... Removing sane-utils (1.0.24-8+deb8u2) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing init-system-helpers (1.22) ... Removing ipig (0.0.r5-1) ... Removing iproute (1:3.16.0-2) ... Removing isc-dhcp-client (4.3.1-6+deb8u2) ... Removing iproute2 (3.16.0-2) ... Removing ipython (2.3.0-2) ... Removing isc-dhcp-common (4.3.1-6+deb8u2) ... Removing java-wrappers (0.1.28) ... Removing javascript-common (11) ... Conf javascript-common disabled. apache2_invoke prerm: Disable configuration javascript-common invoke-rc.d: policy-rc.d denied execution of reload. Removing jellyfish (2.1.4-1) ... Removing jmol (12.2.32+dfsg2-1) ... Removing libfreehep-graphicsio-ps-java (2.1.1-1) ... Removing kalign (1:2.03+20110620-2) ... Removing kissplice (2.2.1-3) ... Removing krb5-locales (1.12.1+dfsg-19+deb8u4) ... Removing ksh (93u+20120801-1) ... Removing last-align (490-1) ... Removing lesstif2:amd64 (1:0.95.2-1.1) ... Removing libace-perl (1.92-3+b1) ... Removing reprof (1.0.1-1) ... Removing librg-reprof-bundle-perl (1.0.1-1) ... Removing libai-fann-perl (0.10-2+b1) ... Removing mysql-server (5.5.58-0+deb8u1) ... Removing mysql-server-5.5 (5.5.58-0+deb8u1) ... Stopping MySQL database server: mysqld. Removing mysql-server-core-5.5 (5.5.58-0+deb8u1) ... Removing libaio1:amd64 (0.3.110-1) ... Removing libmoose-perl (2.1213-1) ... Removing libsoftware-license-perl (0.103010-3) ... Removing libdata-section-perl (0.200006-1) ... Removing libmro-compat-perl (0.12-1) ... Removing libclass-c3-perl (0.26-1) ... Removing libalgorithm-c3-perl (0.09-1) ... Removing libalgorithm-merge-perl (0.08-2) ... Removing libalgorithm-diff-xs-perl (0.04-3+b1) ... Removing libalgorithm-diff-perl (1.19.02-3) ... Removing libalgorithm-munkres-perl (0.08-2) ... Removing libglpk-java (1.0.37-1) ... Removing libglpk36:amd64 (4.55-1) ... Removing libamd2.3.1:amd64 (1:4.2.1-3) ... Removing libanfo0 (0.98-4+b1) ... Removing libvm-ec2-perl (1.28-1) ... Removing libanyevent-cachedns-perl (0.08-1) ... Removing libanyevent-http-perl (2.21-1) ... Removing libanyevent-perl (7.070-3) ... Removing libao4 (1.1.0-3) ... Removing libao-common (1.1.0-3) ... Removing libapache-mime4j-java (0.7.2-3) ... Removing libvamsas-client-java (0.2~git2011.10.17+1b42648-1) ... Removing libcommons-jexl2-java (2.1.1-2) ... Removing libcommons-cli-java (1.2-3) ... Removing libcommons-lang-java (2.6-4) ... Removing libarchive-extract-perl (0.72-1) ... Removing logol-bin (1.7.0-2) ... Removing swi-prolog (6.6.6-5) ... Removing swi-prolog-x (6.6.6-5) ... Removing swi-prolog-nox (6.6.6-5) ... Removing libarchive13:amd64 (3.1.2-11+deb8u3) ... Removing libargtable2-0 (12-1.1) ... Removing libarray-compare-perl (2.11-1) ... Removing libart-2.0-2:amd64 (2.3.21-2) ... Removing libstdc++-4.9-dev:amd64 (4.9.2-10) ... Removing libgfortran-4.9-dev:amd64 (4.9.2-10) ... Removing libvisual-0.4-plugins:amd64 (0.4.0.dfsg.1-7) ... Removing libaspell15:amd64 (0.60.7~20110707-1.3) ... Removing libasprintf-dev:amd64 (0.19.3-2) ... Removing libasprintf0c2:amd64 (0.19.3-2) ... Removing libasync-interrupt-perl (1.20-1+b1) ... Removing libsdl1.2debian:amd64 (1.2.15-10+b1) ... Removing libwxgtk2.8-0:amd64 (2.8.12.1-12) ... Removing rasmol (2.7.5.2-2) ... update-alternatives: using /usr/bin/rasmol-classic to provide /usr/bin/rasmol (rasmol) in auto mode Removing libvte9 (1:0.28.2-5) ... Removing r-recommended (3.1.1-1+deb8u1) ... Removing r-cran-mgcv (1.8-3-1) ... Removing r-cran-matrix (1.1-4-1) ... Removing r-cran-qtl (1.33-7-1) ... Removing r-cran-ape (3.1-4-1) ... Removing r-bioc-cummerbund (2.6.1-1) ... Removing r-bioc-gviz (1.8.4-1) ... Removing r-bioc-biovizbase (1.12.3-1) ... Removing r-cran-hmisc (3.14-5-1) ... Removing r-cran-rpart (4.1-8-1) ... Removing r-cran-survival (2.37-7-1) ... Removing libatlas3-base (3.10.2-7) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Removing libatm1:amd64 (1:2.5.1-1.5) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing libsane:amd64 (1.0.24-8+deb8u2) ... Removing python-glade2 (2.24.0-4) ... Removing python-gtk2 (2.24.0-4) ... Removing libavahi-glib1:amd64 (0.6.31-5) ... Removing libjets3t-java (0.8.1+dfsg-1) ... Removing libaxis-java (1.4-22) ... Removing libdevel-partialdump-perl (0.17-1) ... Removing libclass-load-xs-perl (0.08-1+b1) ... Removing libclass-load-perl (0.22-1) ... Removing libnamespace-clean-perl (0.25-1) ... Removing libb-hooks-endofscope-perl (0.13-1) ... Removing libmultidimensional-perl (0.010-1+b2) ... Removing libbareword-filehandles-perl (0.003-1+b2) ... Removing libb-hooks-op-check-perl (0.19-2+b1) ... Removing libbackport-util-concurrent-java (3.1-3) ... Removing python-ballview (1.4.2+20140406-1+b2) ... Removing python-ball (1.4.2+20140406-1+b2) ... Removing libballview1.4 (1.4.2+20140406-1+b2) ... Removing smalt (0.7.6-4) ... Removing libbambamc0 (0.0.50-1) ... Removing libbamtools2.3.0 (2.3.0+dfsg-2) ... Removing libitext-java (2.1.7-9) ... Removing libbcmail-java (1.49+dfsg-3+deb8u2) ... Removing libbcpkix-java (1.49+dfsg-3+deb8u2) ... Removing libbcprov-java (1.49+dfsg-3+deb8u2) ... Removing libbio-asn1-entrezgene-perl (1.700-1) ... Removing libbio-graphics-perl (2.39-2) ... Removing libbio-perl-run-perl (1.6.9-2) ... Removing libbio-scf-perl (1.03-2+b1) ... Removing libbiojava-java (1:1.7.1-5) ... Removing libbiojava1.7-java (1:1.7.1-5) ... Removing libdate-calc-xs-perl (6.3-2) ... Removing libdate-calc-perl (6.3-2) ... Removing libbit-vector-perl (7.3-1+b2) ... Removing python-biom-format (2.1+dfsg-1) ... Removing python-scipy (0.14.0-2) ... Removing python-multipletau (0.1.4-1) ... Removing python-cogent (1.5.3-2) ... Removing liblapack-dev (3.5.0-4) ... Removing libblas-dev (1.2.20110419-10) ... Removing libbonobo2-0:amd64 (2.32.1-3) ... Removing libbonobo2-common (2.32.1-3) ... Removing libboost-timer1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-chrono1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-date-time1.49.0 (1.49.0-3.2) ... Removing libboost-filesystem1.49.0 (1.49.0-3.2) ... Removing mira-assembler (4.0.2-1+b1) ... Removing libzeep3.0 (3.0.2-1+b2) ... Removing libboost-filesystem1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-iostreams1.49.0 (1.49.0-3.2) ... Removing libcassie1 (1.0.1+dfsg-3+b1) ... Removing libboost-math1.55.0:amd64 (1.55.0+dfsg-3) ... Removing prime-phylo (1.0.11-2) ... Removing libboost-mpi1.55.0 (1.55.0+dfsg-3) ... Removing libboost-program-options1.49.0 (1.49.0-3.2) ... Removing libboost-program-options1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-random1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-regex1.49.0 (1.49.0-3.2) ... Removing libboost-serialization1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-system1.49.0 (1.49.0-3.2) ... Removing libboost-thread1.49.0 (1.49.0-3.2) ... Removing libbsd-resource-perl (1.2907-1+b2) ... Removing lynx (2.8.9dev1-2+deb8u1) ... Removing lynx-cur (2.8.9dev1-2+deb8u1) ... Removing vprerex (6.5.3-1) ... Removing prerex (6.5.3-1) ... Removing libbytecode-java (0.92.svn.20090106-1.1) ... Removing libbz2-dev:amd64 (1.0.6-7+b3) ... Removing libpng12-dev:amd64 (1.2.50-2+deb8u3) ... Removing zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Removing libjpeg8-dev:amd64 (8d-1+deb7u1) ... Removing libpcre3-dev:amd64 (2:8.35-3.3+deb8u4) ... Removing libncursesw5-dev:amd64 (5.9+20140913-1+deb8u2) ... Removing libcaca0:amd64 (0.99.beta19-2) ... Removing libcache-cache-perl (1.07-2) ... Removing libcanberra-gtk3-module:amd64 (0.30-2.1) ... Removing libcanberra-gtk3-0:amd64 (0.30-2.1) ... Removing python-cairo (1.8.8-1+b2) ... Removing libcanberra0:amd64 (0.30-2.1) ... Removing libcarp-always-perl (0.12-1) ... Removing libcarp-clan-perl (6.04-1) ... Removing libcastor-xml-java (1.3.2-3) ... Removing libcastor-core-java (1.3.2-3) ... Removing libcbf0:amd64 (0.9.2.2-1) ... Removing libcdparanoia0:amd64 (3.10.2+debian-11) ... Removing libgvpr1 (2.26.3-14+deb7u2) ... Removing libcgraph5 (2.26.3-14+deb7u2) ... Removing libgvpr2 (2.38.0-7) ... Removing libgvc6 (2.38.0-7) ... Removing python-pyfits (1:3.3-2+b1) ... Removing libcfitsio2:amd64 (3.370-2+deb8u1) ... Removing libcgi-fast-perl (1:2.04-1) ... Removing libcgi-pm-perl (4.09-1) ... Removing libcgi-session-perl (4.48-1+deb8u1) ... Removing libcgmanager0:amd64 (0.33-2+deb8u2) ... Removing libcgraph6 (2.38.0-7) ... Removing libclass-c3-xs-perl (0.13-2+b1) ... Removing libxmlrpc-lite-perl (0.717-1) ... Removing libsoap-lite-perl (1.11-1) ... Removing libclass-inspector-perl (1.28-1) ... Removing libclass-isa-perl (0.36-5) ... Removing libmoo-perl (1.006001-1) ... Removing librole-tiny-perl (1.003004-1) ... Removing libclass-method-modifiers-perl (2.11-1) ... Removing libclass-tiny-perl (1.000-1) ... Removing libclass-xsaccessor-perl (1.19-2+b4) ... Removing libclone-perl (0.37-1+b1) ... Removing libcneartree5:amd64 (3.1.1-2.1) ... Removing libcofoja-java (1.1-r150-2) ... Removing libcolamd2.8.0:amd64 (1:4.2.1-3) ... Removing libcolorhug2:amd64 (1.2.1-1+b2) ... Removing libjson-xs-perl (2.340-1+b2) ... Removing libev-perl (4.18-1) ... Removing libcommon-sense-perl (3.73-2+b3) ... Removing libjaxme-java (0.5.2+dfsg-6) ... Removing libhttpmime-java (4.3.5-2) ... Removing libhttpclient-java (4.3.5-2) ... Removing libcommons-collections-java (2.1.1-10) ... Removing libcommons-collections3-java (3.2.1-7+deb8u1) ... Removing libcommons-compress-java (1.9-1) ... Removing libcommons-dbcp-java (1.4-5) ... Removing libcommons-discovery-java (0.5-3) ... Removing libcommons-httpclient-java (3.1-11+deb8u1) ... Removing libcommons-io-java (2.4-2) ... Removing libcommons-math3-java (3.3-1) ... Removing libcommons-net1-java (1.4.1-5) ... Removing libcommons-net2-java (2.2-2) ... Removing libcommons-pool-java (1.6-2) ... Removing libconfig-general-perl (2.56-1) ... Removing profisis (1.0.11-1) ... Removing libconfig-inifiles-perl (2.83-3) ... Removing libconvert-binary-c-perl (0.76-3+b2) ... Removing libmime-tools-perl (5.505-1) ... Removing libconvert-binhex-perl (1.123-2) ... Removing libmodule-build-perl (0.421000-2+deb8u1) ... Removing 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Removing 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Removing libcpan-meta-perl (2.142690-1) ... Removing libcqrlib2:amd64 (1.1.2-2.1) ... Removing zalign (0.9.1-1+b1) ... Removing ray (2.3.1-1) ... Removing libspreadsheet-parseexcel-perl (0.6500-1) ... Removing libcrypt-rc4-perl (2.02-2) ... Removing libcrypt-ssleay-perl (0.58-1+b2) ... Removing libplplot11 (5.9.9-5) ... Removing libcsiro0:amd64 (5.10.0+dfsg-1) ... Removing prosper (1.00.4+cvs.2007.05.01-4) ... Running 'mktexlsr /usr/share/texmf /var/lib/texmf'. This may take some time... done. Removing texlive-pstricks (2014.20141024-1) ... Removing tipa (2:1.3-20) ... Removing texlive-math-extra (2014.20141024-1) ... Removing staden (2.0.0+b10-1.1) ... Removing r-bioc-variantannotation (1.10.5-1) ... Removing r-bioc-genomicfeatures (1.16.3-1) ... Removing r-bioc-rtracklayer (1.24.2-1) ... Removing staden-io-lib-utils (1.13.7-1) ... Removing libstaden-read1 (1.13.7-1) ... Removing libcurl3-gnutls:amd64 (7.38.0-4+deb8u8) ... Removing libcvector2:amd64 (1.0.3.1-1.1) ... Removing libdata-dumper-simple-perl (0.11-4) ... Removing libeval-closure-perl (0.11-1) ... Removing libsub-exporter-perl (0.986-1) ... Removing libdata-optlist-perl (0.109-1) ... Removing libdate-manip-perl (6.47-1) ... Removing libdb5.1:amd64 (5.1.29-5) ... Removing mysql-client-5.5 (5.5.58-0+deb8u1) ... Removing libdbd-mysql-perl (4.028-2+deb8u2) ... Removing libdbd-pg-perl (3.4.2-1) ... Removing libdbd-sqlite3-perl (1.44-1) ... Removing libdbi-perl (1.631-3+b1) ... Removing libdevel-lexalias-perl (0.05-1+b2) ... Removing libdevel-caller-perl (2.06-1+b2) ... Removing libdevel-globaldestruction-perl (0.13-1) ... Removing libdevel-stacktrace-perl (1.3400-1) ... Removing libpod-coverage-perl (0.23-1) ... Removing libdevel-symdump-perl (2.12-1) ... Removing libdigest-perl-md5-perl (1.9-1) ... Removing libdirectfb-1.2-9:amd64 (1.2.10.0-5.1) ... Removing libmodule-runtime-conflicts-perl (0.001-1) ... Removing libdist-checkconflicts-perl (0.11-1) ... Removing libdjvulibre21:amd64 (3.5.25.4-4+b1) ... Removing libdjvulibre-text (3.5.25.4-4) ... Removing libirs-export91 (1:9.9.5.dfsg-9+deb8u14) ... Removing libdns-export100 (1:9.9.5.dfsg-9+deb8u14) ... Removing libdpkg-perl (1.17.27) ... Removing libgl1-mesa-dri:amd64 (10.3.2-1+deb8u1) ... Removing libdrm-intel1:amd64 (2.4.58-2) ... Removing libdrm-nouveau1a:amd64 (2.4.40-1~deb7u2) ... Removing libdrm-nouveau2:amd64 (2.4.58-2) ... Removing libdrm-radeon1:amd64 (2.4.58-2) ... Removing libglew1.7:amd64 (1.7.0-3) ... Removing x11-utils (7.7+2) ... Removing python-pyglet (1.1.4.dfsg-2) ... Removing libelf1:amd64 (0.159-4.2) ... Removing libelk0 (3.99.8-2.1) ... Removing libelfg0:amd64 (0.8.13-5) ... Removing liberror-perl (0.17-1.1) ... Removing libgphoto2-6:amd64 (2.5.4-1.1+b2) ... Removing libexif12:amd64 (0.6.21-2) ... Removing libexiv2-12 (0.23-1) ... Removing ufraw-batch (0.20-2+deb8u1) ... Removing libexiv2-13:amd64 (0.24-4.1) ... Removing python-all-dev (2.7.9-1) ... Removing python-dev (2.7.9-1) ... Removing python2.7-dev (2.7.9-2+deb8u1) ... Removing libpython-all-dev:amd64 (2.7.9-1) ... Removing libpython-dev:amd64 (2.7.9-1) ... Removing libpython2.7-dev:amd64 (2.7.9-2+deb8u1) ... Removing libexpat1-dev:amd64 (2.1.0-6+deb8u4) ... Removing libtype-tiny-perl (1.000004-1) ... Removing libexporter-tiny-perl (0.038-2) ... Removing libfakeroot:amd64 (1.20.2-1) ... Removing libfann2:amd64 (2.1.0~beta+dfsg-1) ... Removing libfcgi-perl (0.77-1+deb8u1) ... Removing ruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Removing libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Removing libffi5:amd64 (3.0.10-3) ... Removing libruby2.1:amd64 (2.1.5-2+deb8u3) ... Removing libffindex0 (0.9.9.3-2) ... Removing libfftw3-3:amd64 (3.3.4-2) ... Removing relion-bin (1.3+dfsg-2) ... Removing librelion-1.3-1:amd64 (1.3+dfsg-2) ... Removing libfftw3-long3:amd64 (3.3.4-2) ... Removing libfile-mimeinfo-perl (0.26-1) ... Removing libfile-desktopentry-perl (0.07-1) ... Removing libfile-basedir-perl (0.03-1) ... Removing libfile-chdir-perl (0.1008-1) ... Removing update-inetd (4.43) ... Removing libfile-copy-recursive-perl (0.38-1) ... Removing libfile-fcntllock-perl (0.22-1+b1) ... Removing libfile-homedir-perl (1.00-1) ... Removing libsvg-graph-perl (0.02-2) ... Removing libtree-dagnode-perl (1.22-1) ... Removing libfile-slurp-tiny-perl (0.003-1) ... Removing libfile-which-perl (1.09-1) ... Removing libflite1:amd64 (1.4-release-12) ... Removing seaview (1:4.5.3.1-2) ... Removing libfltk-images1.3:amd64 (1.3.2-6+b1) ... Removing libfltk1.3:amd64 (1.3.2-6+b1) ... Removing libhtml-format-perl (2.11-1) ... Removing libfont-afm-perl (1.20-1) ... Removing libfont-ttf-perl (1.04-1) ... Removing libfontenc1:amd64 (1:1.1.2-1+b2) ... Removing libfreecontact0 (1.0.21-3+b1) ... Removing libfreehep-graphicsio-emf-java (2.1.1-emfplus+dfsg1-2) ... Removing libfreehep-graphicsio-pdf-java (2.1.1+dfsg-1) ... Removing xterm (312-2) ... Removing libfreezethaw-perl (0.5001-1) ... Removing libftgl2:amd64 (2.1.3~rc5-4+nmu1) ... Removing rnahybrid (2.1.1-2) ... Removing libg20 (0.72-5+b1) ... Removing libgcj-common (1:4.9.1-7) ... Removing librtmp0:amd64 (2.4+20111222.git4e06e21-1) ... Removing libgnutls26:amd64 (2.12.20-8+deb7u5) ... Removing libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Removing libgd-graph-perl (1.48-2) ... Removing libgd-text-perl (0.86-9) ... Removing libgd-svg-perl (0.33-1) ... Removing libgd-perl (2.53-1+b1) ... Removing pdl (1:2.007-4) ... Removing libgd3:amd64 (2.1.0-5+deb8u11) ... Removing vcftools (0.1.12+dfsg-1) ... Removing libwmf0.2-7:amd64 (0.2.8.4-10.3+deb8u2) ... Removing libgeronimo-jta-1.1-spec-java (1.1.1-3) ... Removing libgetopt-euclid-perl (0.4.5-1) ... Removing libgetopt-simple-perl (1.52-4) ... Removing libgettextpo-dev:amd64 (0.19.3-2) ... Removing libgettextpo0:amd64 (0.19.3-2) ... Removing libgoogle-glog0 (0.3.3-2) ... Removing libgflags2 (2.0-2.1) ... Removing tm-align (20140601+dfsg-1) ... Removing r-cran-vegan (2.0-10-1) ... Removing libghemical-data (3.0.0-2) ... Removing libgirepository-1.0-1:amd64 (1.42.0-2.2) ... Removing libglade2-0:amd64 (1:2.6.4-2) ... Removing libglew1.10:amd64 (1.10.0-3) ... Removing wise (2.4.1-17) ... Removing libgusb2:amd64 (0.1.6-5) ... Removing libgudev-1.0-0:amd64 (215-17+deb8u7) ... Removing libglib2.0-data (2.42.1-1) ... Removing njplot (2.4-2+b1) ... Removing ncbi-tools-x11 (6.1.20120620-8) ... Removing libvibrant6b:amd64 (6.1.20120620-8) ... Removing liboglappth2 (1.0.0-2) ... Removing libgtkglext1 (1.2.0-3.2) ... Removing libglu1-mesa:amd64 (9.0.0-2) ... Removing libgmp-dev:amd64 (2:6.0.0+dfsg-6) ... Removing libmpc2:amd64 (0.9-4) ... Removing tree-puzzle (5.2-7+b1) ... Removing libsprng2 (2.0a-8) ... Removing libgmpxx4ldbl:amd64 (2:6.0.0+dfsg-6) ... Removing libjswingreader-java (0.3-1) ... Removing libgnumail-java (1.1.2-9) ... Removing libgnuinet-java (1.1.2-2) ... Removing libgnujaf-java (1.1.1-8) ... Removing libpq5:amd64 (9.4.15-0+deb8u1) ... Removing velvet (1.2.10+dfsg1-1) ... Removing seqan-apps (1.4.1+dfsg-2) ... Removing libgphoto2-l10n (2.5.4-1.1) ... Removing libgphoto2-port10:amd64 (2.5.4-1.1+b2) ... Removing libgraph-perl (1:0.96-1.1) ... Removing libgraph4 (2.26.3-14+deb7u2) ... Removing libgraphics-colorobject-perl (0.5.0-6) ... Removing libgraphics-colornames-perl (2.11-6) ... Removing libpango1.0-0:amd64 (1.36.8-3) ... Removing libpangoxft-1.0-0:amd64 (1.36.8-3) ... Removing theseus (3.0.0-1) ... Removing libmath-tamuanova-perl (1.0.2-2+b2) ... Removing libtamuanova-0.2 (0.2-3) ... Removing pvm (3.4.5-12.6) ... Removing openssh-client (1:6.7p1-5+deb8u4) ... Removing libgtextutils0:amd64 (0.7-2) ... Removing libgtk2.0-bin (2.24.25-3+deb8u2) ... Removing libguard-perl (1.022-2+b1) ... Removing libhamcrest-java (1.3-5) ... Removing libhdf4-0-alt (4.2.10-3) ... Removing python-h5py (2.2.1-1.1+b1) ... Removing libhdf5-8:amd64 (1.8.13+docs-15+deb8u1) ... Removing libheap-perl (0.80-2) ... Removing mrbayes (3.2.3+dfsg-1) ... Removing libhmsbeagle1 (2.1.2-1) ... Removing libhpdf-2.2.1 (2.2.1-1.1) ... Removing libhsqldb-java (2.2.9+dfsg-4) ... Removing libhtml-form-perl (6.03-1) ... Removing libhtml-tableextract-perl (2.11-1) ... Removing libhtml-template-perl (2.95-1) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libhttpcore-java (4.3.3-1) ... Removing libhwloc-plugins (1.10.0-3) ... Removing mpqc (2.3.1-16) ... Removing libxt-dev:amd64 (1:1.1.4-1+b1) ... Removing libsm-dev:amd64 (2:1.2.2-1+b1) ... Removing libice-dev:amd64 (2:1.0.9-1+b1) ... Removing libxm4:amd64 (2.3.4-6+deb8u1) ... Removing libicu48:amd64 (4.8.1.1-12+deb7u3) ... Removing libxerces-c3.1:amd64 (3.1.1-5.1+deb8u3) ... Removing libieee1284-3:amd64 (0.2.11-12) ... Removing libopenexr6:amd64 (1.6.1-8) ... Removing libilmbase6:amd64 (1.0.1-6.1) ... Removing libimport-into-perl (1.002004-1) ... Removing libindirect-perl (0.33-1) ... Removing libsc7 (2.3.1-16) ... Removing libint1 (1.1.5-1) ... Removing libio-all-perl (0.79-1) ... Removing libipc-run-perl (0.92-1) ... Removing libio-pty-perl (1:1.08-1+b4) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libio-socket-ip-perl (0.32-1) ... Removing libmailtools-perl (2.13-1) ... Removing libnet-smtp-ssl-perl (1.01-3) ... Removing libtest-pod-perl (1.48-1) ... Removing libole-storage-lite-perl (0.19-1) ... Removing libio-stringy-perl (2.110-5) ... Removing libipc-sharelite-perl (0.17-3+b2) ... Removing libisccfg-export90 (1:9.9.5.dfsg-9+deb8u14) ... Removing libisc-export95 (1:9.9.5.dfsg-9+deb8u14) ... Removing libisorelax-java (20041111-8) ... Removing libitext5-java (5.5.3-2) ... Removing libjaba-client-java (0+dfsg-1) ... Removing libjam-java (0.0.r304-1) ... Removing libjava-xmlbuilder-java (0.4-2) ... Removing libxom-java (1.2.10-1) ... Removing libjdom1-java (1.1.3-1) ... Removing libjaxen-java (1.1.6-1) ... Removing libtiff4:amd64 (3.9.6-11) ... Removing libpoppler-qt4-4:amd64 (0.26.5-2+deb8u1) ... Removing libjbzip2-java (0.9.1-3) ... Removing libjcode-pm-perl (2.06-1) ... Removing libjcommon-java (1.0.16-4) ... Removing libjebl2-java (0.0.r22-1) ... Removing libjellyfish-2.0-2 (2.1.4-1) ... Removing libjgoodies-forms-java (1.6.0-4) ... Removing libjgoodies-common-java (1.4.0-2) ... Removing libjmol-java (12.2.32+dfsg2-1) ... Removing libv4l-0:amd64 (1.6.0-2) ... Removing libv4lconvert0:amd64 (1.6.0-2) ... Removing python-imaging (2.6.1-2+deb8u3) ... Removing python-pil:amd64 (2.6.1-2+deb8u3) ... Removing pyqi (0.3.2+dfsg-1) ... Removing sphinx-common (1.2.3+dfsg-1) ... Removing libjs-sphinxdoc (1.2.3+dfsg-1) ... Removing pynast (1.2.2-1) ... Removing libjs-jquery-ui (1.10.1+dfsg-1) ... Removing libjs-scriptaculous (1.9.0-2) ... Removing libjs-prototype (1.7.1-3) ... Removing libjs-underscore (1.7.0~dfsg-1) ... Removing libjsch-java (0.1.51-1) ... Removing libjson0:amd64 (0.11-4) ... Removing libjson-perl (2.61-1) ... Removing libjsoncpp0 (0.6.0~rc2-3.1) ... Removing libjzlib-java (1.1.3-1) ... Removing r-cran-ggplot2 (1.0.0-1) ... Removing r-cran-reshape2 (1.4-1) ... Removing liblcms1:amd64 (1.19.dfsg2-1.2+deb7u1) ... Removing liblensfun0 (0.2.8-2) ... Removing liblensfun-data (0.2.8-2) ... Removing liblexical-sealrequirehints-perl (0.007-1+b2) ... Removing liblist-allutils-perl (0.09-1) ... Removing libstatistics-descriptive-perl (3.0607-1) ... Removing profphd (1.0.40-1) ... Removing librg-utils-perl (1.0.43-2) ... Removing libllvm3.5:amd64 (1:3.5-10) ... Removing libterm-ui-perl (0.42-1) ... Removing liblog-message-simple-perl (0.10-2) ... Removing liblog-message-perl (0.8-1) ... Removing liblog4cpp5 (1.0-4) ... Removing liblog4j1.2-java (1.2.17-5) ... Removing libmagickcore-6.q16-2:amd64 (8:6.8.9.9-5+deb8u11) ... Removing liblqr-1-0:amd64 (0.4.2-2) ... Removing python-mpi4py (1.3.1+hg20131106-2) ... Removing liblzma-dev:amd64 (5.1.1alpha+20120614-2+b3) ... Removing liblzo2-2:amd64 (2.08-1.2) ... Removing libmagic1:amd64 (1:5.22+15-2+deb8u3) ... Removing libmail-java (1.5.2-3) ... Removing libmail-sendmail-perl (0.79.16-1) ... Removing libmaloc1 (0.2-3) ... Removing libmath-bezier-perl (0.01-1) ... Removing libmath-spline-perl (0.02-1) ... Removing libmath-derivative-perl (0.01-6) ... Removing libmath-random-mt-perl (1.16-1+b2) ... Removing libmath-round-perl (0.06-4) ... Removing libmath-vec-perl (1.01-2) ... Removing libmath-vecstat-perl (0.08-1) ... Removing libmiglayout-java (4.2-1) ... Removing libmldbm-perl (2.05-1) ... Removing libparams-validate-perl (1.13-1+b1) ... Removing libpackage-stash-perl (0.37-1) ... Removing libmodule-implementation-perl (0.09-1) ... Removing libmodule-pluggable-perl (5.1-1) ... Removing libmodule-runtime-perl (0.014-1) ... Removing libmodule-signature-perl (0.73-1+deb8u2) ... Removing libmopac7-1gf (1.15-6) ... Removing libmotif-common (2.3.4-6+deb8u1) ... Removing libmysql-java (5.1.42-1~deb8u1) ... Removing libqt4-sql-mysql:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing python-mysqldb (1.2.3-2.1) ... Removing libmysqlclient18:amd64 (5.5.58-0+deb8u1) ... Removing readseq (1-11) ... Removing ncbi-tools-bin (6.1.20120620-8) ... Removing libncurses5-dev:amd64 (5.9+20140913-1+deb8u2) ... Removing libnet-dbus-perl (1.0.0-2+b2) ... Removing netpbm (2:10.0-15.2) ... Removing libnetpbm10 (2:10.0-15.2) ... Removing libnih-dbus1 (1.0.3-4.3) ... Removing libnih1 (1.0.3-4.3) ... Removing libobjc4:amd64 (4.9.2-10) ... Removing libvorbisfile3:amd64 (1.3.4-2) ... Removing libopenbabel4 (2.3.2+dfsg-2) ... Removing liborbit-2-0:amd64 (1:2.14.19-0.3) ... Removing liboro-java (2.0.8a-9) ... Removing libossp-uuid-perl (1.6.2-1.5+b1) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b1) ... Removing libpackage-constants-perl (0.04-1) ... Removing libpackage-deprecationmanager-perl (0.13-1) ... Removing libpackage-stash-xs-perl (0.28-2+b1) ... Removing libpadwalker-perl (1.98-1+b1) ... Removing libpangox-1.0-0:amd64 (0.0.2-5) ... Removing texlive-pstricks-doc (2014.20141024-1) ... Removing texlive-latex-extra-doc (2014.20141024-1) ... Removing psutils (1.17.dfsg-2) ... Removing libparams-classify-perl (0.013-4+b2) ... Removing libparams-util-perl (1.07-2+b1) ... Removing libspreadsheet-writeexcel-perl (2.40-1) ... Removing libparse-recdescent-perl (1.967009+dfsg-1) ... Removing libpathplan4 (2.38.0-7) ... Removing libpciaccess0:amd64 (0.13.2-3+b1) ... Removing libpcrecpp0:amd64 (2:8.35-3.3+deb8u4) ... Removing ssake (3.8.2-1) ... Removing libperl4-corelibs-perl (0.003-1) ... Removing libperl5.20 (5.20.2-3+deb8u9) ... Removing libperlio-gzip-perl (0.18-3+b1) ... Removing libpipeline1:amd64 (1.4.0-1) ... Removing perl-tk (1:804.032-3+b3) ... Removing libpod-latex-perl (0.61-1) ... Removing 'diversion of /usr/bin/pod2latex to /usr/bin/pod2latex.bundled by libpod-latex-perl' Removing 'diversion of /usr/share/man/man1/pod2latex.1.gz to /usr/share/man/man1/pod2latex.bundled.1.gz by libpod-latex-perl' Removing libpod-readme-perl (0.11-1) ... Removing policykit-1 (0.105-15~deb8u2) ... Removing libpolkit-agent-1-0:amd64 (0.105-15~deb8u2) ... Removing libpolkit-backend-1-0:amd64 (0.105-15~deb8u2) ... Removing libpolkit-gobject-1-0:amd64 (0.105-15~deb8u2) ... Removing rsync (3.1.1-3) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing libpopt0:amd64 (1.16-10) ... Removing libpostscript-perl (0.06-2) ... Removing libprocps0:amd64 (1:3.3.3-3) ... Removing libproj0 (4.8.0-5) ... Removing libprotobuf9:amd64 (2.6.1-1) ... Removing libpth20:amd64 (2.0.7-20) ... Removing libpthread-stubs0:amd64 (0.3-3) ... Removing libx11-dev:amd64 (2:1.6.2-3+deb8u1) ... Removing libxcb1-dev:amd64 (1.10-3+b1) ... Removing libpthread-stubs0-dev:amd64 (0.3-4) ... Removing libpvm3 (3.4.5-12.6) ... Removing python-sympy (0.7.5-3) ... Removing python-wxversion (3.0.1.1+dfsg-2) ... Removing python-sqlalchemy-ext (0.9.8+dfsg-0.1) ... Removing uc-echo (1.12-7) ... Removing pdb2pqr (1.9.0+dfsg-1) ... Removing python-simplegeneric (0.8.1-1) ... Removing python-pysqlite2 (2.6.3-3) ... Removing python-nose (1.3.4-1) ... Removing python-support (1.0.15) ... Removing libqhull5 (2009.1-3) ... Removing libqhull6:amd64 (2012.1-5) ... Removing libqsastime0:amd64 (5.10.0+dfsg-1) ... Removing libqt4-test:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing populations (1.2.33+svn0120106-2.1) ... Removing profphd-utils (1.0.10-1) ... Removing libreadline-dev:amd64 (6.3-8+b3) ... Removing libreadline6-dev:amd64 (6.3-8+b3) ... Removing libreadonly-perl (2.000-1) ... Removing libregexp-common-perl (2013031301-1) ... Removing libregexp-java (1.5-3) ... Removing librelaxng-datatype-java (1.0+ds1-3) ... Removing librg-exception-perl (1.0.3-1) ... Removing libsam-java (1.113-1) ... Removing libsane-common (1.0.24-8+deb8u2) ... Removing libsane-extras:amd64 (1.0.22.3) ... Removing libsane-extras-common (1.0.22.3) ... Removing libsasl2-modules:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsc-data (2.3.1-16) ... Removing lksctp-tools (1.0.16+dfsg-2) ... Removing libservlet2.5-java (6.0.45+dfsg-1~deb8u1) ... Removing libset-intspan-perl (1.19-1) ... Removing libset-scalar-perl (1.29-1) ... Removing libsigsegv2:amd64 (2.10-4+b1) ... Removing snp-sites (1.5.0-1) ... Removing libsnp-sites1 (1.5.0-1) ... Removing libsocket-perl (2.016-1) ... Removing libsort-naturally-perl (1.03-1) ... Removing libspiffy-perl (0.41-1) ... Removing libsqlite0 (2.8.17-12) ... Removing sqlite3 (3.8.7.1-1+deb8u2) ... Removing r-bioc-shortread (1.22.0-1) ... Removing squizz (0.99b+dfsg-3) ... Removing libsquizz (0.99b+dfsg-3) ... Removing ssl-cert (1.0.35) ... Removing libstrictures-perl (1.005005-1) ... Removing libstring-approx-perl (3.27-1+b2) ... Removing libsub-exporter-progressive-perl (0.001011-1) ... Removing libsub-identify-perl (0.08-1) ... Removing libsub-install-perl (0.928-1) ... Removing libsub-name-perl (0.12-1) ... Removing libsvg-perl (2.59-1) ... Removing libsvm3 (3.12-1) ... Removing libswitch-perl (2.17-2) ... Removing libsys-hostname-long-perl (1.4-3) ... Removing libsystemd-login0:amd64 (215-17+deb8u7) ... Removing libtask-weaken-perl (1.04-1) ... Removing libtasn1-3:amd64 (2.13-2+deb7u2) ... Removing libtbb2 (4.2~20140122-5) ... Removing tk8.5 (8.5.17-1) ... Removing tklib (0.6-1+deb8u1) ... Removing staden-common (2.0.0+b10-1.1) ... Removing r-cran-tcltk2 (1.2-10-1) ... Removing tk-table (2.10-2) ... Removing tk (8.6.0+8) ... Removing tk8.6 (8.6.2-1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-1) ... Removing libtk8.6:amd64 (8.6.2-1) ... Removing libtcmalloc-minimal4 (2.2.1-0.2) ... Removing libtdb1:amd64 (1.3.6-0+deb8u1) ... Removing libterm-readkey-perl (2.32-1+b1) ... Removing libterm-readline-gnu-perl (1.24-2+b1) ... Removing libtext-format-perl (0.59-1) ... Removing libtext-soundex-perl (3.4-1+b2) ... Removing libtext-template-perl (1.46-1) ... Removing libtheora0:amd64 (1.1.1+dfsg.1-6) ... Removing libtie-ixhash-perl (1.23-1) ... Removing libtinfo-dev:amd64 (5.9+20140913-1+deb8u2) ... Removing libtinyxml2.6.2:amd64 (2.6.2-2) ... Removing libtorque2 (2.4.16+dfsg-1+deb7u4) ... Removing libtre5:amd64 (0.8.0-4+deb8u1) ... Removing libtry-tiny-perl (0.22-1) ... Removing libts-0.0-0:amd64 (1.0-11) ... Removing libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ... Removing libtype-tiny-xs-perl (0.010-1) ... Removing libunicode-map-perl (0.112-11+b1) ... Removing libunistring0:amd64 (0.9.3-5.2+b1) ... Removing libunwind8 (1.1-3.2) ... Removing libxml-xpath-perl (1.13-7) ... Removing mipe (1.1-4) ... Removing libxml-twig-perl (1:3.48-1) ... Removing libusb-1.0-0:amd64 (2:1.0.19-1) ... Removing libutempter0 (1.1.5-4) ... Removing libvariable-magic-perl (0.55-1) ... Removing libvisual-0.4-0:amd64 (0.4.0-6) ... Removing libvpx1:amd64 (1.3.0-3) ... Removing libvte-common (1:0.28.2-5) ... Removing libwebpmux1:amd64 (0.4.1-1.2+b2) ... Removing libwebpdemux1:amd64 (0.4.1-1.2+b2) ... Removing libwebp5:amd64 (0.4.1-1.2+b2) ... Removing tcpd (7.6.q-25) ... Removing libwsdl4j-java (1.6.3-1) ... Removing libwxbase2.8-0:amd64 (2.8.12.1-12) ... Removing treeviewx (0.5.1+20100823-3) ... Removing xauth (1:1.0.9-1) ... Removing libx11-doc (2:1.6.2-3+deb8u1) ... Removing libx11-protocol-perl (0.56-6) ... Removing libxau-dev:amd64 (1:1.0.8-1) ... Removing libxp6:amd64 (1:1.0.2-2) ... Removing libxcb-shape0:amd64 (1.10-3+b1) ... Removing libxdmcp-dev:amd64 (1:1.1.1-1+b1) ... Removing libxdot4 (2.38.0-7) ... Removing libxxf86dga1:amd64 (2:1.1.4-1+b1) ... Removing libxml-checker-perl (0.13-6) ... Removing libxml-dom-xpath-perl (0.14-1) ... Removing libxml-dom-perl (1.44-1) ... Removing libxml-sax-writer-perl (0.54-1) ... Removing libxml-filter-buffertext-perl (1.01-5) ... Removing libxml-simple-perl (2.20-1) ... Removing libxml-libxslt-perl (1.92-1+b1) ... Removing libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.11-1) ... Removing libxml-perl (0.08-2) ... Removing libxml-regexp-perl (0.04-1) ... Removing libxml-sax-base-perl (1.07-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libxml-xpathengine-perl (0.13-1) ... Removing sra-toolkit (2.3.5-2+dfsg-1) ... Removing sra-toolkit-libs0 (2.3.5-2+dfsg-1) ... Removing libxmuu1:amd64 (2:1.1.2-1) ... Removing libxpp2-java (2.1.10-7) ... Removing libxpp3-java (1.1.4c-2) ... Removing python-lxml (3.4.0-1) ... Removing xsltproc (1.1.28-2+deb8u3) ... Removing libxslt1.1:amd64 (1.1.28-2+deb8u3) ... Removing libxtables10 (1.4.21-2+b1) ... Removing libxv1:amd64 (2:1.0.10-1+deb8u1) ... Removing python-yaml (3.11-2) ... Removing libyaml-0-2:amd64 (0.1.6-3) ... Removing libyaml-perl (1.13-1) ... Removing libyaml-syck-perl (1.27-2+b2) ... Removing libyaml-tiny-perl (1.64-1) ... Removing loki (2.4.7.4-5) ... Removing lua-filesystem:amd64 (1.6.2-3) ... Removing lua-lpeg:amd64 (0.12-1) ... Removing lua-md5:amd64 (1.2+git+1+8d87fee-1) ... Removing macs (2.0.9.1-1) ... Removing mafft (7.205-1) ... Removing make (4.0-8.1) ... Removing manpages-dev (3.74-1) ... Removing manpages (3.74-1) ... Removing maq (0.7.1-5) ... Removing massxpert-data (3.4.1-1) ... Removing med-tasks (2.0) ... Removing melting (4.3.1+dfsg-1) ... Removing menu (2.1.47) ... Removing metastudent-data (1.0.1-2) ... Removing metastudent-data-2 (1.0.0-1) ... Removing wigeon (20101212+dfsg-1) ... Removing microbiomeutil-data (20101212+dfsg-1) ... Removing mlv-smile (1.47-3) ... Removing mothur (1.33.3+dfsg-2) ... Removing muscle (1:3.8.31-1) ... Removing mustang (3.2.2-1) ... Removing mysql-common (5.5.58-0+deb8u1) ... Removing ncbi-blast+ (2.2.29-3) ... Removing ncbi-epcr (2.3.12-1-2) ... Removing ncbi-seg (0.0.20000620-2) ... Removing ncoils (2002-4) ... Removing norsnet (1.0.17-1) ... Removing norsp (1.0.6-1) ... Removing ocl-icd-libopencl1:amd64 (2.2.3-1+deb8u1) ... Removing openms-common (1.11.1-5) ... Removing paraclu (9-1) ... Removing parsinsert (1.04-1) ... Removing patch (2.7.5-1) ... Removing perl-doc (5.20.2-3+deb8u9) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing perm (0.4.0-1) ... Removing phylip (1:3.696+dfsg-1) ... Removing phyml (2:20120412-2) ... Removing phyutility (2.7.3-1) ... Removing plink (1.07-3) ... 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Removing r-cran-foreign (0.8.61-1) ... Removing r-cran-formula (1.1-2-1) ... Removing r-other-mott-happy.hbrem (2.4-1) ... Removing r-cran-g.data (2.4-1) ... Removing r-cran-genabel (1.8-0-1) ... Removing r-cran-genabel.data (1.0.0-1) ... Removing r-cran-optparse (1.2.0-1) ... Removing r-cran-getopt (1.20.0-1) ... Removing r-cran-gtable (0.1.2-1.1) ... Removing r-cran-hwriter (1.3.2-1) ... Removing r-cran-kernsmooth (2.23-13-1) ... Removing r-cran-labeling (0.3-1) ... Removing r-cran-sp (1:1.0-15-1) ... Removing r-cran-nlme (3.1.117-1) ... Removing r-cran-latticeextra (0.6-26-1) ... Removing r-cran-mapproj (1.2-2-1) ... Removing r-cran-maps (2.3-7-1) ... Removing r-cran-mass (7.3-34-1) ... Removing r-cran-matrixstats (0.10.3-1) ... Removing r-cran-multicore (0.2-1) ... Removing r-cran-nnet (7.3-8-1) ... Removing r-cran-permute (0.8-3-1) ... Removing r-cran-reshape (0.8.5-1) ... Removing r-cran-proto (0.3-10-1) ... Removing r-cran-r.methodss3 (1.6.1-1) ... Removing r-cran-rcolorbrewer (1.0-5-2) ... Removing r-cran-spatial (7.3-8-1) ... Removing r-cran-xml (3.98-1.1-1) ... Removing r-doc-html (3.1.1-1+deb8u1) ... Removing r-other-bio3d (1.1-5-1) ... Removing rate4site (3.0.0-1) ... Removing raxml (8.1.1-3) ... Removing rename (0.20-3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing rtax (0.984-2) ... Removing saint (2.4.0+dfsg-1) ... Removing samtools (0.1.19-1) ... Removing science-tasks (1.4) ... Removing seqtk (1.0-1) ... Removing xml-core (0.13+nmu2) ... Removing sgml-base (1.26+nmu4) ... Removing sibsim4 (0.20-2) ... Removing sigma-align (1.1.3-3) ... Removing sim4 (0.0.20121010-1) ... Removing snap (2013-11-29-1) ... Removing soapdenovo (1.05-2) ... Removing soapdenovo2 (240+dfsg-2) ... Removing t-coffee (11.00.8cbe486-1) ... Removing tabix (1.1-1) ... Removing tcllib (1.16-dfsg-2) ... Removing tcl (8.6.0+8) ... Removing tcl8.5 (8.5.17-1) ... Removing tcl8.6 (8.6.2+dfsg-2) ... Removing texlive-fonts-extra-doc (2014.20141024-1) ... Removing tex-gyre (20140520-1) ... Removing texlive-font-utils (2014.20141024-1) ... Removing texlive-fonts-recommended (2014.20141024-2+deb8u1) ... Removing texlive-fonts-recommended-doc (2014.20141024-2+deb8u1) ... Removing texlive-generic-recommended (2014.20141024-2+deb8u1) ... Removing texlive-pictures (2014.20141024-2+deb8u1) ... Removing texlive-latex-recommended (2014.20141024-2+deb8u1) ... Removing texlive-latex-base (2014.20141024-2+deb8u1) ... Removing texlive-latex-base-doc (2014.20141024-2+deb8u1) ... Removing texlive-latex-recommended-doc (2014.20141024-2+deb8u1) ... Removing texlive-pictures-doc (2014.20141024-2+deb8u1) ... Removing tigr-glimmer (3.02-3) ... Removing transtermhp (2.09-2) ... Removing tree-puzzle-doc (5.2-7) ... Removing tsconf (1.0-11) ... Removing ttf-adf-accanthis (0.20090423-2) ... Removing ttf-adf-gillius (0.20090423-2) ... Removing ttf-adf-universalis (0.20090423-2) ... Removing wise-data (2.4.1-17) ... Removing wwwconfig-common (0.2.2) ... Removing x11proto-input-dev (2.3.1-1) ... Removing x11proto-core-dev (7.0.26-1) ... Removing x11proto-kb-dev (1.0.6-2) ... Removing xbitmaps (1.1.1-2) ... Removing xdg-user-dirs (0.15-2) ... Removing xorg-sgml-doctools (1:1.11-1) ... Removing xtrans-dev (1.3.4-1) ... Removing ant (1.9.4-3) ... Removing apache2 (2.4.10-10+deb8u11) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing apache2-bin (2.4.10-10+deb8u11) ... Removing apache2-data (2.4.10-10+deb8u11) ... Removing apache2-utils (2.4.10-10+deb8u11) ... Removing bc (1.06.95-9) ... Removing gcc (4:4.9.2-2) ... Removing gcc-4.9 (4.9.2-10) ... Removing binutils (2.25-5+deb8u1) ... Removing bioperl (1.6.924-1) ... Removing blast2 (1:2.2.26.20120620-8) ... Removing libfreehep-graphicsio-tests-java (2.1.1+dfsg1-3) ... Removing libjas-plotter-java (2.2.6+dfsg1-2) ... Removing javahelp2 (2.0.05.ds1-7) ... Removing cpp (4:4.9.2-2) ... Removing cpp-4.9 (4.9.2-10) ... Removing libgnomevfs2-common (1:2.24.4-6) ... Removing gconf2 (3.2.6-3) ... Removing dbus-x11 (1.8.22-0+deb8u1) ... Removing default-jre (2:1.7-52) ... Removing default-jre-headless (2:1.7-52) ... Removing libqtwebkit4:amd64 (2.3.4.dfsg-3) ... Removing libwxgtk3.0-0:amd64 (3.0.2-1+b1) ... Removing gconf-service (3.2.6-3) ... Removing libgconf-2-4:amd64 (3.2.6-3) ... Removing gconf2-common (3.2.6-3) ... Removing ghostscript (9.06~dfsg-2+deb8u6) ... Removing gnome-mime-data (2.18.0-1) ... Removing gnustep-base-common (1.24.7-1) ... Removing gnustep-common (2.6.6-3) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Removing imagemagick-common (8:6.8.9.9-5+deb8u11) ... Removing libgstreamer-plugins-base1.0-0:amd64 (1.4.4-2+deb8u1) ... Removing iso-codes (3.57-1) ... Removing libfreehep-graphicsio-java (2.1.1-3) ... Removing libfreehep-export-java (2.1.1-2) ... Removing libfreehep-swing-java (2.0.3-3) ... Removing libcommons-logging-java (1.2-1) ... Removing libcommons-parent-java (22-2) ... Removing libapache-pom-java (10-2) ... Removing libaprutil1-ldap:amd64 (1.5.4-1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Removing libaprutil1:amd64 (1.5.4-1) ... Removing libapr1:amd64 (1.5.1-3) ... Removing libgcc-4.9-dev:amd64 (4.9.2-10) ... Removing libasan1:amd64 (4.9.2-10) ... Removing libatomic1:amd64 (4.9.2-10) ... Removing libball1.4 (1.4.2+20140406-1+b2) ... Removing libball1.4-data (1.4.2+20140406-1) ... Removing libbio-perl-perl (1.6.924-1) ... Removing python-numpy (1:1.8.2-2) ... Removing libboost-date-time1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-iostreams1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-regex1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-thread1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libboost-system1.55.0:amd64 (1.55.0+dfsg-3) ... Removing libedit2:amd64 (3.1-20140620-2) ... Removing libbsd0:amd64 (0.7.0-2) ... Removing libc6-dev:amd64 (2.19-18+deb8u10) ... Removing libc-dev-bin (2.19-18+deb8u10) ... Removing libcdt4 (2.26.3-14+deb7u2) ... Removing libcdt5 (2.38.0-7) ... Removing libcilkrts5:amd64 (4.9.2-10) ... Removing libcloog-isl4:amd64 (0.18.2-1+b2) ... Removing libcommons-codec-java (1.9-1) ... Removing r-cran-rcurl (1.95-4.3-1+deb8u1) ... Removing libcurl3:amd64 (7.38.0-4+deb8u8) ... Removing libdata-stag-perl (0.13-1) ... Removing libdbus-glib-1-2:amd64 (0.102-1) ... Removing libqt4-opengl:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing libfftw3-double3:amd64 (3.3.4-2) ... Removing libfftw3-single3:amd64 (3.3.4-2) ... Removing libfreehep-graphics2d-java (2.1.1-4) ... Removing libfreehep-io-java (2.0.2-4) ... Removing libnotify4:amd64 (0.7.6-2) ... Removing librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u3) ... Removing libgsl0ldbl (1.16+dfsg-2) ... Removing libgstreamer1.0-0:amd64 (1.4.4-2+deb8u1) ... Removing mpi-default-bin (1.0.2+nmu2) ... Removing openmpi-bin (1.6.5-9.1+deb8u1) ... Removing libio-string-perl (1.08-3) ... Removing libisl10:amd64 (0.12.2-2) ... Removing libitm1:amd64 (4.9.2-10) ... Removing libjs-jquery (1.7.2+dfsg-3.2) ... Removing liblist-moreutils-perl (0.33-2+b1) ... Removing liblsan0:amd64 (4.9.2-10) ... Removing liblua5.1-0:amd64 (5.1.5-7.1) ... Removing libmpc3:amd64 (1.0.2-1) ... Removing libncbi6:amd64 (6.1.20120620-8) ... Removing liborc-0.4-0:amd64 (1:0.4.22-1) ... Removing texlive-base (2014.20141024-2+deb8u1) ... Removing python (2.7.9-1) ... Removing libpython-stdlib:amd64 (2.7.9-1) ... Removing libpython2.7:amd64 (2.7.9-2+deb8u1) ... Removing python2.7 (2.7.9-2+deb8u1) ... Removing python-minimal (2.7.9-1) ... Removing python2.7-minimal (2.7.9-2+deb8u1) ... Removing libpython2.7-stdlib:amd64 (2.7.9-2+deb8u1) ... Removing libpython2.7-minimal:amd64 (2.7.9-2+deb8u1) ... Removing libqt4-xmlpatterns:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing libqt4-network:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing libqt4-sql:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing libqtdbus4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing libqt4-xml:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing r-bioc-biocparallel (0.6.1-1) ... Removing r-cran-batchjobs (1.4-1) ... Removing r-cran-rsqlite (0.11.4-3) ... Removing libssh2-1:amd64 (1.4.3-4.1+deb8u1) ... Removing libtablelayout-java (20090826-2) ... Removing libtcl8.6:amd64 (8.6.2+dfsg-2) ... Removing libtsan0:amd64 (4.9.2-10) ... Removing libubsan0:amd64 (4.9.2-10) ... Removing libxml-parser-perl (2.41-3) ... Removing libwxbase3.0-0:amd64 (3.0.2-1+b1) ... Removing libxerces2-java (2.11.0-7) ... Removing libxml-commons-external-java (1.4.01-2) ... Removing libxml-commons-resolver1.1-java (1.2-7) ... Removing linux-libc-dev:amd64 (3.16.51-2) ... Removing ncbi-data (6.1.20120620-8) ... Removing openmpi-common (1.6.5-9.1+deb8u1) ... Removing r-bioc-rsamtools (1.16.1-2) ... Removing r-bioc-biostrings (2.32.1-1) ... Removing r-bioc-genomicranges (1.16.4-2) ... Removing r-bioc-genomeinfodb (1.0.2-2) ... Removing r-bioc-xvector (0.4.0-1) ... Removing r-bioc-iranges (1.22.10-1) ... Removing r-cran-sendmailr (1.2-1-1) ... Removing r-cran-base64enc (0.1-2-1) ... Removing r-cran-fail (1.2-1) ... Removing r-cran-bbmisc (1.7-1) ... Removing r-cran-bitops (1.0-6-1) ... Removing r-cran-brew (1.0-6-1) ... Removing r-cran-checkmate (1.5.0-1) ... Removing r-cran-foreach (1.4.2-1) ... Removing r-cran-codetools (0.2-9-1) ... Removing r-cran-dbi (0.3.1-1) ... Removing r-cran-digest (0.6.4-1) ... Removing r-cran-iterators (1.0.7-1) ... Removing r-cran-lattice (0.20-29-1) ... Removing r-cran-plyr (1.8.1-2) ... Removing r-cran-stringr (0.6.2-2) ... Removing openjdk-7-jre:amd64 (7u111-2.6.7-1~deb8u1) ... Removing openjdk-7-jre-headless:amd64 (7u111-2.6.7-1~deb8u1) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Removing libqtgui4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing libfreehep-util-java (2.0.2-5) ... Removing junit (3.8.2-8) ... Removing libasound2:amd64 (1.0.28-1) ... Removing libasound2-data (1.0.28-1) ... Removing libpulse0:amd64 (5.0-13) ... Removing libasyncns0:amd64 (0.8-5) ... Removing libatk-wrapper-java-jni:amd64 (0.30.5-1) ... Removing libatk-wrapper-java (0.30.5-1) ... Removing libaudio2:amd64 (1.9.4-3) ... Removing libgtk2.0-0:amd64 (2.24.25-3+deb8u2) ... Removing libopenmpi1.6 (1.6.5-9.1+deb8u1) ... Removing libcr0 (0.8.5-2.2) ... Removing texlive-binaries (2014.20140926.35254-6) ... Removing libgs9 (9.06~dfsg-2+deb8u6) ... Removing libgl1-mesa-glx:amd64 (10.3.2-1+deb8u1) ... Removing libdrm2:amd64 (2.4.58-2) ... Removing libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... Removing libflac8:amd64 (1.3.0-3) ... Removing libgif4:amd64 (4.1.6-11+deb8u1) ... Removing libglapi-mesa:amd64 (10.3.2-1+deb8u1) ... Removing libharfbuzz-icu0:amd64 (0.9.35-2) ... Removing libgs9-common (9.06~dfsg-2+deb8u6) ... Removing libgtk2.0-common (2.24.25-3+deb8u2) ... Removing libhwloc5:amd64 (1.10.0-3) ... Removing libibverbs1 (1.1.8-1.1) ... Removing libicu52:amd64 (52.1-8+deb8u6) ... Removing libidn11:amd64 (1.29-1+deb8u2) ... Removing libijs-0.35:amd64 (0.35-10) ... Removing libpoppler46:amd64 (0.26.5-2+deb8u1) ... Removing libjbig2dec0 (0.13-4~deb8u2) ... Removing libjson-c2:amd64 (0.11-4) ... Removing libptexenc1 (2014.20140926.35254-6) ... Removing libkpathsea6 (2014.20140926.35254-6) ... Removing r-cran-rcpp (0.11.3-1) ... Removing littler (0.2.1-1) ... Removing libmng1:amd64 (1.0.10+dfsg-3.1+b3) ... Removing libltdl7:amd64 (2.4.2-1.11+b1) ... Removing libmpfr4:amd64 (3.1.2-2) ... Removing libnb-org-openide-util-java (7.4+dfsg1-2) ... Removing libnb-org-openide-util-lookup-java (7.4+dfsg1-2) ... Removing libnuma1:amd64 (2.0.10-1) ... Removing libvorbisenc2:amd64 (1.3.4-2) ... Removing libopenjpeg5:amd64 (1:1.5.2-3) ... Removing libpotrace0 (1.12-1+deb8u1) ... Removing libqtcore4:amd64 (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing libsctp1:amd64 (1.0.16+dfsg-2) ... Removing libxaw7:amd64 (2:1.0.12-2+b1) ... Removing libxmu6:amd64 (2:1.1.2-1) ... Removing libsynctex1 (2014.20140926.35254-6) ... Removing libvorbis0a:amd64 (1.3.4-2) ... Removing libwrap0:amd64 (7.6.q-25) ... Removing libx11-xcb1:amd64 (2:1.6.2-3+deb8u1) ... Removing libxcb-dri2-0:amd64 (1.10-3+b1) ... Removing libxcb-dri3-0:amd64 (1.10-3+b1) ... Removing libxcb-glx0:amd64 (1.10-3+b1) ... Removing libxcb-present0:amd64 (1.10-3+b1) ... Removing libxcb-sync1:amd64 (1.10-3+b1) ... Removing libxxf86vm1:amd64 (1:1.1.3-1+b1) ... Removing libxtst6:amd64 (2:1.2.2-1+deb8u1) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libxshmfence1:amd64 (1.1-4) ... Removing libzzip-0-13:amd64 (0.13.62-3+deb8u1) ... Removing poppler-data (0.4.7-1) ... Removing qtcore4-l10n (4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1) ... Removing r-bioc-biocgenerics (0.10.0-1) ... Removing r-cran-pkgkitten (0.1.2-1) ... Removing tex-common (5.03) ... Removing r-base-core (3.1.1-1+deb8u1) ... Removing libgomp1:amd64 (4.9.2-10) ... Removing libxt6:amd64 (1:1.1.4-1+b1) ... Removing liblapack3 (3.5.0-4) ... Removing libogg0:amd64 (1.3.2-1) ... Removing libpaper-utils (1.1.24+nmu4) ... Removing libpaper1:amd64 (1.1.24+nmu4) ... Removing libsm6:amd64 (2:1.2.2-1+b1) ... Removing libtk8.5:amd64 (8.5.17-1) ... Removing libtcl8.5:amd64 (8.5.17-1) ... Removing libxss1:amd64 (1:1.2.2-1) ... Removing unzip (6.0-16+deb8u3) ... Removing xdg-utils (1.1.0~rc1+git20111210-7.4) ... Removing zip (3.0-8) ... Removing libblas3 (1.2.20110419-10) ... Removing libblas-common (1.2.20110419-10) ... Removing libxft2:amd64 (2.3.2-1) ... Removing libgfortran3:amd64 (4.9.2-10) ... Removing libice6:amd64 (2:1.0.9-1+b1) ... Removing libquadmath0:amd64 (4.9.2-10) ... Removing x11-common (1:7.7+7) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing libwww-perl (6.08-1) ... Removing python3 (3.4.2-2) ... Removing libcupsimage2:amd64 (1.7.5-11+deb8u2) ... Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-1) ... Removing libhtml-parser-perl (3.71-1+b3) ... Removing libhtml-tagset-perl (3.20-2) ... Removing libhttp-cookies-perl (6.01-1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libnet-http-perl (6.07-1) ... Removing libio-socket-ssl-perl (2.002-2+deb8u3) ... Removing python3.4 (3.4.2-1) ... Removing libpython3-stdlib:amd64 (3.4.2-2) ... Removing libpython3.4-stdlib:amd64 (3.4.2-1) ... dpkg-query: no packages found matching pkgname Removing libmpdec2:amd64 (2.4.1-1) ... Removing libnet-ssleay-perl (1.65-1+deb8u1) ... Removing python3-minimal (3.4.2-2) ... Removing python3.4-minimal (3.4.2-1) ... Removing libpython3.4-minimal:amd64 (3.4.2-1) ... dpkg-query: no packages found matching pkgname Removing libwww-robotrules-perl (6.01-1) ... Removing mime-support (3.58) ... Removing netbase (5.3) ... Removing openjdk-6-jre-lib (6b38-1.13.10-1~deb7u1) ... Removing tasksel-data (3.31+deb8u1) ... Removing libgtk-3-0:amd64 (3.14.5-1+deb8u1) ... Removing libgtk-3-common (3.14.5-1+deb8u1) ... Removing adwaita-icon-theme (3.14.0-2) ... Removing libgtk-3-bin (3.14.5-1+deb8u1) ... Removing 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin' Removing 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin' Removing ca-certificates-java (20140324) ... Removing openjdk-6-jre-headless:amd64 (6b38-1.13.10-1~deb7u1) ... Removing librest-0.7-0:amd64 (0.7.92-3) ... Removing libsoup-gnome2.4-1:amd64 (2.48.0-1+deb8u1) ... Removing libsoup2.4-1:amd64 (2.48.0-1+deb8u1) ... Removing glib-networking:amd64 (2.42.0-2) ... Removing gsettings-desktop-schemas (3.14.1-1) ... Removing dconf-gsettings-backend:amd64 (0.22.0-1) ... dpkg: warning: while removing dconf-gsettings-backend:amd64, directory '/usr/lib/x86_64-linux-gnu/gio/modules' not empty so not removed Removing dconf-service (0.22.0-1) ... Removing dh-python (1.20141111-2) ... dpkg: warning: while removing dh-python, directory '/usr/share/dh-python/dhpython/build' not empty so not removed Removing glib-networking-services (2.42.0-2) ... Removing glib-networking-common (2.42.0-2) ... Removing hicolor-icon-theme (0.13-1) ... Removing java-common (0.52) ... Removing libatk-bridge2.0-0:amd64 (2.14.0-2) ... Removing libatk1.0-0:amd64 (2.14.0-1) ... Removing libatk1.0-data (2.14.0-1) ... Removing libatspi2.0-0:amd64 (2.14.0-1) ... Removing libcairo-gobject2:amd64 (1.14.0-2.1+deb8u2) ... Removing libcolord2:amd64 (1.2.1-1+b2) ... Removing librsvg2-common:amd64 (2.40.5-1+deb8u2) ... Removing librsvg2-2:amd64 (2.40.5-1+deb8u2) ... Removing libcroco3:amd64 (0.6.8-3+b1) ... Removing libcupsfilters1:amd64 (1.0.61-5+deb8u3) ... Removing libdconf1:amd64 (0.22.0-1) ... Removing libhttp-message-perl (6.06-1) ... Removing libencode-locale-perl (1.03-1) ... Removing libwayland-cursor0:amd64 (1.6.0-2) ... Removing libwayland-client0:amd64 (1.6.0-2) ... Removing libgdk-pixbuf2.0-0:amd64 (2.31.1-2+deb8u6) ... Removing libgdk-pixbuf2.0-common (2.31.1-2+deb8u6) ... Removing libpangocairo-1.0-0:amd64 (1.36.8-3) ... Removing libpangoft2-1.0-0:amd64 (1.36.8-3) ... Removing libharfbuzz0b:amd64 (0.9.35-2) ... Removing libgraphite2-3:amd64 (1.3.10-1~deb8u1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing libjasper1:amd64 (1.900.1-debian1-2.4+deb8u3) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u4) ... Removing libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12) ... Removing libjpeg8:amd64 (8d-1+deb7u1) ... Removing libjson-glib-1.0-0:amd64 (1.0.2-1) ... Removing libjson-glib-1.0-common (1.0.2-1) ... Removing liblcms2-2:amd64 (2.6-3+deb8u1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libnss3:amd64 (2:3.26-1+debu8u3) ... Removing libnspr4:amd64 (2:4.12-1+debu8u1) ... Removing libpcsclite1:amd64 (1.8.13-1+deb8u1) ... Removing libproxy1:amd64 (0.4.11-4+b2) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing libtimedate-perl (2.3000-2) ... Removing liburi-perl (1.64-1) ... Removing libxcomposite1:amd64 (1:0.4.4-1) ... Removing libxcursor1:amd64 (1:1.1.14-1+b1) ... Removing libxdamage1:amd64 (1:1.1.4-2+b1) ... Removing libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Removing libxi6:amd64 (2:1.7.4-1+deb8u1) ... Removing libxinerama1:amd64 (2:1.1.3-1+b1) ... Removing libxkbcommon0:amd64 (0.4.3-2) ... Removing shared-mime-info (1.3-1) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u5) ... Removing libxrandr2:amd64 (2:1.4.2-1+deb8u1) ... Removing tasksel (3.31+deb8u1) ... Removing tzdata-java (2017c-0+deb8u1) ... Removing xkb-data (2.12-1) ... Removing ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpango-1.0-0:amd64 (1.36.8-3) ... Removing fontconfig (2.11.0-6.3+deb8u1) ... Removing libcups2:amd64 (1.7.5-11+deb8u2) ... Removing libavahi-client3:amd64 (0.6.31-5) ... Removing libavahi-common3:amd64 (0.6.31-5) ... Removing libavahi-common-data:amd64 (0.6.31-5) ... Removing libcairo2:amd64 (1.14.0-2.1+deb8u2) ... Removing libthai0:amd64 (0.1.21-1) ... Removing libdatrie1:amd64 (0.2.8-1) ... Removing perl (5.20.2-3+deb8u9) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Removing libglib2.0-0:amd64 (2.42.1-1+b1) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libkrb5-3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libk5crypto3:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkrb5support0:amd64 (1.12.1+dfsg-19+deb8u4) ... Removing libkeyutils1:amd64 (1.5.9-5+b1) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Removing libpixman-1-0:amd64 (0.32.6-3) ... Removing openssl (1.0.1t-1+deb8u7) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u7) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Removing libthai-data (0.1.21-1) ... Removing libxcb-render0:amd64 (1.10-3+b1) ... Removing libxcb-shm0:amd64 (1.10-3+b1) ... Removing libxext6:amd64 (2:1.3.3-1) ... Removing libxrender1:amd64 (1:0.9.8-1+b1) ... Removing perl-modules (5.20.2-3+deb8u9) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing fonts-liberation (1.07.4-1) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Removing libx11-data (2:1.6.2-3+deb8u1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for dbus (1.8.22-0+deb8u1) ... Processing triggers for udev (215-17+deb8u7) ... 20m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', 'remove', 'libsigsegv2:amd64', 'python-scipy', 'python-ballview', 'libelf1:amd64', 'python-pysqlite2', 'libgssapi-krb5-2:amd64', 'libargtable2-0', 'libbio-graphics-perl', 'libnspr4:amd64', 'libmro-compat-perl', 'liblsan0:amd64', 'libxdamage1:amd64', 'libpangocairo-1.0-0:amd64', 'libpq5:amd64', 'cgmanager', 'profnet-md', 'profnet-isis', 'libio-stringy-perl', 'libreadonly-perl', 'fonts-gfs-didot', 'med-bio', 'libgnomevfs2-0:amd64', 'libprocps0:amd64', 'r-bioc-variantannotation', 'xsltproc', 'libbonobo2-common', 'dialign', 'tk-table', 'imagemagick-6.q16', 'libpython3-stdlib:amd64', 'ruby1.9.1', 'libdrm2:amd64', 'libdbd-pg-perl', 'r-cran-getopt', 'libpython-dev:amd64', 'lua-md5:amd64', 'tipa', 'libgraph4', 'libfreehep-graphics2d-java', 'libmoo-perl', 'libcassie1', 'libipc-sharelite-perl', 'libset-scalar-perl', 'libmsv-java', 'ttf-dejavu-extra', 'libxft2:amd64', 'autogrid', 'libatomic1:amd64', 'picard-tools', 'libapr1:amd64', 'ampliconnoise', 'r-cran-munsell', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'bioperl', 'libgetopt-simple-perl', 'libgirepository-1.0-1:amd64', 'libdigest-perl-md5-perl', 'reprof', 'libgtk2.0-0:amd64', 'dconf-service', 'libdb5.1:amd64', 'libbonobo2-0:amd64', 'populations', 'tzdata-java', 'gnustep-base-common', 'intltool-debian', 'libbackport-util-concurrent-java', 'libvibrant6a:amd64', 'libtsan0:amd64', 'disulfinder', 'mpi-default-bin', 'libcairo2:amd64', 'perl-doc', 'r-bioc-bsgenome', 'openjdk-7-jre:amd64', 'seqan-apps', 'python-pexpect', 'mlv-smile', 'fastlink', 'libmodule-runtime-perl', 'njplot', 'libxslt1.1:amd64', 'hhsuite', 'libjsch-java', 'libpotrace0', 'fonts-gfs-artemisia', 'libgraphics-colorobject-perl', 'libmultidimensional-perl', 'bamtools', 'libidn11:amd64', 'bowtie2', 'libkrb5support0:amd64', 'fonts-sil-gentium-basic', 'libglpk36:amd64', 'ncoils', 'libjson-glib-1.0-common', 'python-support', 'fonts-freefont-ttf', 'libbio-scf-perl', 'texlive-latex-extra-doc', 'mysql-server', 'libnettle4:amd64', 'tex-gyre', 'libdrm-nouveau1a:amd64', 'libjcommon-java', 'python3-pkg-resources', 'libmpc3:amd64', 'libio-html-perl', 'libpython2.7:amd64', 'gnome-mime-data', 'python-egenix-mxdatetime', 'gnuplot-nox', 'glpk-utils', 'libp11-kit0:amd64', 'python-gdata', 'libblas3', 'r-cran-maps', 'bzip2-doc', 'libgomp1:amd64', 'rnahybrid', 'libcommons-discovery-java', 'libboost-date-time1.55.0:amd64', 'cpp-4.9', 'libjson0:amd64', 'openmpi-common', 'texlive-pictures-doc', 'ballview', 'dconf-gsettings-backend:amd64', 'gnustep-gui-runtime', 'libcommons-jexl2-java', 'velvet', 'gromacs', 'libcommons-collections-java', 'libdrm-nouveau2:amd64', 'fonts-cmu', 'icedtea-6-jre-cacao:amd64', 'fonts-cabin', 'libsane:amd64', 'libopengl-perl', 'liblcms1:amd64', 'r-cran-sendmailr', 'idba', 'liblensfun0', 'liblzo2-2:amd64', 'openssl', 'r-bioc-biostrings', 'prodigal', 'libmail-java', 'libhwloc-plugins', 'fonts-crosextra-caladea', 'libpcrecpp0:amd64', 'libgusb2:amd64', 'python-pyfits', 'libxml-simple-perl', 'r-cran-codetools', 'python-sphinx', 'libconfig-inifiles-perl', 'lua-lpeg:amd64', 'liblcms2-2:amd64', 'python-renderpm:amd64', 'gnustep-base-runtime', 'gnuplot-tex', 'embassy-domainatrix', 'libqt4-xmlpatterns:amd64', 'clustalw', 'libcsiro0:amd64', 'libopenjpeg5:amd64', 'phyml', 'liborc-0.4-0:amd64', 'clustalo', 'python-chardet', 'libb-hooks-endofscope-perl', 'libglapi-mesa:amd64', 'libqtwebkit4:amd64', 'libglade2-0:amd64', 'libcurl3:amd64', 'ray', 'libhsqldb-java', 'x11proto-kb-dev', 'librelion-1.3-1:amd64', 'openmpi-checkpoint', 'gff2aplot', 'libboost-regex1.55.0:amd64', 'python-multipletau', 'java-wrappers', 'libhwloc5:amd64', 'libfreehep-graphicsio-svg-java', 'exonerate', 'qiime-data', 'isc-dhcp-client', 'amap-align', 'libcdparanoia0:amd64', 'libfreehep-graphicsio-java', 'libvte-common', 'libdata-dumper-simple-perl', 'colord', 'r-cran-dichromat', 'biosquid', 'mysql-common', 'soapdenovo', 'libterm-ui-perl', 'libfreehep-swing-java', 'libgmp10:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'menu', 'r-cran-rpart', 'libgdbm3:amd64', 'dotur', 'libcurl3-gnutls:amd64', 'libxcb-dri3-0:amd64', 'tabix', 'python-glade2', 'flexbar', 'libxinerama1:amd64', 'r-bioc-xvector', 'libglib2.0-0:amd64', 'libusb-1.0-0:amd64', 'libbsd0:amd64', 'patch', 'r-cran-matrixstats', 'maqview', 'libaspell15:amd64', 'libxerces-c3.1:amd64', 'apache2-utils', 'libgtextutils0:amd64', 'libossp-uuid-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'fonts-gfs-solomos', 'libllvm3.5:amd64', 'probabel', 'libmath-random-mt-perl', 'emboss-lib', 'lesstif2:amd64', 'libswitch-perl', 'anfo', 'sigma-align', 'qiime', 'profnet-con', 'r-cran-g.data', 'libio-sessiondata-perl', 'ant-contrib', 'libunwind8', 'libsm-dev:amd64', 'libanyevent-cachedns-perl', 'libhtml-parser-perl', 'libjson-glib-1.0-0:amd64', 'libdata-stag-perl', 'binfmt-support', 'libxcb-sync1:amd64', 'libcanberra0:amd64', 'phylip', 'libaudio2:amd64', 'r-cran-testthat', 'circos-tools', 'perl-tk', 'pyscanfcs', 'conservation-code', 'mrbayes', 'libjgoodies-common-java', 'python-wxgtk3.0', 'libmath-bezier-perl', 'libboost-date-time1.49.0', 'libfontconfig1:amd64', 'libxml-dom-xpath-perl', 'libfile-fcntllock-perl', 'netbase', 'figtree', 'libxcb-glx0:amd64', 'libpod-latex-perl', 'apache2-data', 'profbval', 'libspreadsheet-writeexcel-perl', 'liblwp-mediatypes-perl', 'r-bioc-cummerbund', 'libxt6:amd64', 'libijs-0.35:amd64', 'freeglut3:amd64', 'r-bioc-genomicalignments', 'zlib1g-dev:amd64', 'libxml-sax-writer-perl', 'libglew1.10:amd64', 'libasprintf0c2:amd64', 'libsctp1:amd64', 'samtools', 'make', 'libjets3t-java', 'libopenbabel4', 'libjswingreader-java', 'concavity', 'libxaw7:amd64', 'libsasl2-modules-db:amd64', 'perlprimer', 'topp', 'libpaper1:amd64', 'garlic', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'jmol', 'ca-certificates', 'librsvg2-2:amd64', 'libdbi-perl', 'fonts-gfs-neohellenic', 'clonalframe', 'librg-reprof-bundle-perl', 'pynast', 'libfftw3-single3:amd64', 'python-roman', 'r-cran-mapproj', 'fonts-ebgaramond-extra', 'libtext-soundex-perl', 'gromacs-data', 'melting', 'libgnome-2-0:amd64', 'xbitmaps', 'libavahi-client3:amd64', 'libelk0', 'r-cran-formula', 'libxi6:amd64', 'rasmol', 'pycorrfit', 'libtree-dagnode-perl', 'libset-intspan-perl', 'tigr-glimmer', 'norsp', 'junit4', 'libball1.4', 'libwxgtk2.8-0:amd64', 'fonts-stix', 'openssh-client', 'giira', 'libprotobuf9:amd64', 'libquadmath0:amd64', 'libcolamd2.8.0:amd64', 'libsqlite3-0:amd64', 'openjdk-7-jdk:amd64', 'dialign-tx', 'libxml-twig-perl', 'libjson-c2:amd64', 'libcommons-pool-java', 'tasksel', 'libxau6:amd64', 'libfile-which-perl', 'libxcomposite1:amd64', 'discosnp', 'libpthread-stubs0:amd64', 'libgs9', 'libatk-bridge2.0-0:amd64', 'libapache-pom-java', 'libxml-perl', 'libsys-hostname-long-perl', 'libpython2.7-dev:amd64', 'python-reportlab-accel:amd64', 'ruby2.1', 'cdbs', 'update-inetd', 'libjbig0:amd64', 'libjsoncpp0', 'libxml-commons-resolver1.1-java', 'librole-tiny-perl', 'cdbfasta', 'libcache-cache-perl', 'libxcursor1:amd64', 'libbiojava-java', 'ttf-freefont', 'libgtk-3-bin', 'libalgorithm-diff-perl', 'libtre5:amd64', 'jmol-applet', 'r-cran-rcurl', 'ifupdown', 'texlive-fonts-extra-doc', 'fonts-lobstertwo', 'libyaml-syck-perl', 'mknfonts.tool', 'r-bioc-rtracklayer', 'libsynctex1', 'r-cran-domc', 'libnih-dbus1', 'libreadline6-dev:amd64', 'libboost-regex1.49.0', 'libvorbisenc2:amd64', 'libxcb-dri2-0:amd64', 'acedb-other', 'libvisual-0.4-0:amd64', 'libbsd-resource-perl', 'aragorn', 'libdbd-mysql-perl', 'libsort-naturally-perl', 'libogg0:amd64', 'libcdt5', 'libcdt4', 'r-cran-bitops', 'r-cran-gtable', 'r-cran-abind', 'sibsim4', 'libv4l-0:amd64', 'texlive-latex-base-doc', 'libpcre3-dev:amd64', 'libproj0', 'libjzlib-java', 'librg-utils-perl', 'python3.4-minimal', 'wise-data', 'libgstreamer1.0-0:amd64', 'libtext-template-perl', 'ufraw-batch', 'hmmer2', 'libmysql-java', 'python-qcli', 'ghostscript', 'apbs', 'libzzip-0-13:amd64', 'libxml-sax-perl', 'libasan1:amd64', 'r-cran-sp', 'libsvm3', 'libcgi-session-perl', 'libalgorithm-munkres-perl', 'libbio-perl-perl', 'r-cran-mass', 'libperl4-corelibs-perl', 'libxml-dom-perl', 'libgsl0ldbl', 'ncbi-tools-x11', 'mafft', 'libgettextpo0:amd64', 'libfreecontact0', 'libcrypt-ssleay-perl', 'libfltk-images1.3:amd64', 'gawk', 'libjbzip2-java', 'libgmp-dev:amd64', 'libboost-iostreams1.49.0', 'ltrsift', 'fonts-texgyre', 'libruby2.1:amd64', 'librtmp0:amd64', 'python-pysam', 'libhtml-tagset-perl', 'libbcpkix-java', 'libxmlrpc-lite-perl', 'texlive-binaries', 'jalview', 'proalign', 'ant-optional', 'libsvg-perl', 'libclass-isa-perl', 'x11-xserver-utils', 'libfann2:amd64', 'libnamespace-clean-perl', 'perm', 'perl', 'libflite1:amd64', 'emacsen-common', 'libtasn1-6:amd64', 'libjpeg8-dev:amd64', 'libbcmail-java', 'libhamcrest-java', 'ksh', 'libpython-all-dev:amd64', 'swi-prolog-nox', 'libopenms1.11', 'libhttpmime-java', 'r-cran-fail', 'ncbi-tools-bin', 'libpython2.7-minimal:amd64', 'libev-perl', 'liblapack3', 'python3-nose', 'libjasper1:amd64', 'maq', 'ssake', 'mothur', 'libsane-common', 'texlive-fonts-recommended', 'libcommons-compress-java', 'libqhull5', 'libnb-org-openide-util-lookup-java', 'libwrap0:amd64', 'jellyfish', 'gconf2', 'r-cran-base64enc', 'libxml-commons-external-java', 'libgd-svg-perl', 'fonts-liberation', 'libmath-vec-perl', 'python-biopython', 'vcftools', 'graphviz', 'libjs-jquery', 'python-pygments', 'libatk-wrapper-java', 'r-cran-colorspace', 'libcilkrts5:amd64', 'libapache-mime4j-java', 'python-gmpy', 'libguard-perl', 'pp-popularity-contest', 'libfreehep-graphicsio-tests-java', 'libieee1284-3:amd64', 'libgtk-3-common', 'libfreehep-io-java', 'libpoppler-qt4-4:amd64', 'parsinsert', 'r-bioc-annotationdbi', 'r-cran-nnet', 'python-imaging', 'med-tasks', 'python-tk', 'libexiv2-13:amd64', 'libxerces2-java', 'r-cran-vegan', 'python-tz', 'fonts-freefont-otf', 'libwxbase3.0-0:amd64', 'libmagic1:amd64', 'bauble', 'libjdom1-java', 'blt', 'libdevel-stacktrace-perl', 'libutempter0', 'velvetoptimiser', 'tree-puzzle-doc', 'fonts-dejavu-extra', 'dictionaries-common', 'libwebpdemux1:amd64', 'libilmbase6:amd64', 'fontconfig-config', 'libxcb1-dev:amd64', 'libio-socket-ssl-perl', 'python-reportlab', 'r-cran-hwriter', 'libvisual-0.4-plugins:amd64', 'libpoppler46:amd64', 'libfreehep-graphicsio-pdf-java', 'libmysqlclient18:amd64', 'libthai-data', 'libdata-section-perl', 'libfftw3-long3:amd64', 'libgtk2.0-bin', 'gnustep-gui-common', 'libalgorithm-diff-xs-perl', 'tasksel-data', 'prime-phylo', 'libpvm3', 'xdg-user-dirs', 'r-cran-boot', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'texlive-latex-extra', 'libnetpbm10', 'libzeep3.0', 'libfcgi-perl', 'python-docutils', 'libitext-java', 'libboost-filesystem1.49.0', 'soapdenovo2', 'libqtgui4:amd64', 'libvte9', 'python-gobject', 'tophat', 'libdate-calc-perl', 'hicolor-icon-theme', 'texlive-math-extra', 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'libmaloc1', 'libpango1.0-0:amd64', 'libjs-jquery-ui', 'seaview', 'plasmidomics', 'libharfbuzz0b:amd64', 'r-cran-kernsmooth', 'libbit-vector-perl', 'libxcb-present0:amd64', 'neobio', 'libpangox-1.0-0:amd64', 'openjdk-6-jre-headless:amd64', 'libdevel-globaldestruction-perl', 'glib-networking-services', 'libsub-identify-perl', 'lmodern', 'libjson-perl', 'r-doc-html', 'libpaper-utils', 'libservlet2.5-java', 'heirloom-mailx', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'metastudent-data', 'ttf-dejavu-core', 'libmng1:amd64', 'libpod-coverage-perl', 'fastdnaml', 'rename', 'libsub-exporter-progressive-perl', 'libqt4-network:amd64', 'libgnustep-gui0.24', 'libgnustep-gui0.20', 'libkpathsea6', 'libindirect-perl', 'libbz2-dev:amd64', 'libjbig2dec0', 'libtiff4:amd64', 'python', 'libboost-mpi1.55.0', 'libgnumail-java', 'libpango-1.0-0:amd64', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'python-six', 'libsoup-gnome2.4-1:amd64', 'embassy-domsearch', 'tk8.6-blt2.5', 'r-cran-labeling', 'libtablelayout-java', 'libjson-xs-perl', 'r-cran-lattice', 'muscle', 'libexporter-tiny-perl', 'laptop-detect', 'texlive-pstricks-doc', 'tcl', 'libmailtools-perl', 'swi-prolog-x', 'kissplice', 'metastudent', 'libmodule-build-perl', 'libpulse0:amd64', 'libsc7', 'fonts-lato', 'libc6-dev:amd64', 'r-cran-genabel', 'ttf-adf-accanthis', 'libgfortran-4.9-dev:amd64', 'libbareword-filehandles-perl', 'r-bioc-genomicfeatures', 'libmpdec2:amd64', 'libpng12-0:amd64', 'r-bioc-biobase', 'tcl8.6', 'python3', 'libpython-stdlib:amd64', 'libsystemd-login0:amd64', 'libedit2:amd64', 'r-cran-fastcluster', 'docutils-common', 'liblog-message-simple-perl', 'shared-mime-info', 'libsoap-lite-perl', 'ncbi-seg', 'javahelp2', 'seqtk', 'libcgmanager0:amd64', 'texlive-pictures', 'libsndfile1:amd64', 'phyutility', 'tk', 'libclass-tiny-perl', 'libxdmcp6:amd64', 'libasound2:amd64', 'probcons', 'libcommons-cli-java', 'r-cran-pkgkitten', 'libghemical-data', 'librtmp1:amd64', 'r-cran-survival', 'genometools-common', 'xml-core', 'r-cran-chron', 'libgphoto2-6:amd64', 'plink', 'libjebl2-java', 'libmagickcore5:amd64', 'libxv1:amd64', 'mira-assembler', 'gfortran-4.9', 'x11-common', 'groff', 'r-cran-checkmate', 'libxau-dev:amd64', 'libruby1.9.1', 'libcommons-io-java', 'libtask-weaken-perl', 'libglew1.7:amd64', 'wise', 'lynx', 'libio-string-perl', 'python-pmw', 'libx11-data', 'libgnujaf-java', 'libaprutil1:amd64', 'gamgi', 'libxml-xpath-perl', 'libmldbm-perl', 'bzip2', 'r-bioc-biocgenerics', 'libx11-protocol-perl', 'libtest-pod-perl', 'libxfixes3:amd64', 'libplplot11', 'dpkg-dev', 'libcommons-net1-java', 'libconvert-binary-c-perl', 'libsprng2', 'libtcmalloc-minimal4', 'libmodule-implementation-perl', 'libjaxme-java', 'libboost-thread1.49.0', 'libxml-writer-perl', 'science-biology'] 20m13.5s INFO: Running scripts post_remove 20m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_remove_exceptions'] 20m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_remove_exceptions'] 20m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_remove_extras'] 20m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_remove_extras'] 20m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg', '--purge', 'libsigsegv2:amd64', 'python-scipy', 'python-ballview', 'libelf1:amd64', 'python-pysqlite2', 'libgssapi-krb5-2:amd64', 'libargtable2-0', 'libbio-graphics-perl', 'libnspr4:amd64', 'libmro-compat-perl', 'liblsan0:amd64', 'libxdamage1:amd64', 'libpangocairo-1.0-0:amd64', 'libpq5:amd64', 'cgmanager', 'profnet-md', 'profnet-isis', 'libio-stringy-perl', 'libreadonly-perl', 'fonts-gfs-didot', 'med-bio', 'libgnomevfs2-0:amd64', 'libprocps0:amd64', 'r-bioc-variantannotation', 'xsltproc', 'libbonobo2-common', 'dialign', 'tk-table', 'imagemagick-6.q16', 'libpython3-stdlib:amd64', 'ruby1.9.1', 'libdrm2:amd64', 'libdbd-pg-perl', 'r-cran-getopt', 'libpython-dev:amd64', 'lua-md5:amd64', 'tipa', 'libgraph4', 'libfreehep-graphics2d-java', 'libmoo-perl', 'libcassie1', 'libipc-sharelite-perl', 'libset-scalar-perl', 'libmsv-java', 'ttf-dejavu-extra', 'libxft2:amd64', 'autogrid', 'libatomic1:amd64', 'picard-tools', 'libapr1:amd64', 'ampliconnoise', 'r-cran-munsell', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'bioperl', 'libgetopt-simple-perl', 'libgirepository-1.0-1:amd64', 'libdigest-perl-md5-perl', 'reprof', 'libgtk2.0-0:amd64', 'dconf-service', 'libdb5.1:amd64', 'libbonobo2-0:amd64', 'populations', 'tzdata-java', 'gnustep-base-common', 'intltool-debian', 'libbackport-util-concurrent-java', 'libvibrant6a:amd64', 'libtsan0:amd64', 'disulfinder', 'mpi-default-bin', 'libcairo2:amd64', 'perl-doc', 'r-bioc-bsgenome', 'openjdk-7-jre:amd64', 'seqan-apps', 'python-pexpect', 'mlv-smile', 'fastlink', 'libmodule-runtime-perl', 'njplot', 'libxslt1.1:amd64', 'hhsuite', 'libjsch-java', 'libpotrace0', 'fonts-gfs-artemisia', 'libgraphics-colorobject-perl', 'libmultidimensional-perl', 'bamtools', 'libidn11:amd64', 'bowtie2', 'libkrb5support0:amd64', 'fonts-sil-gentium-basic', 'libglpk36:amd64', 'ncoils', 'libjson-glib-1.0-common', 'python-support', 'fonts-freefont-ttf', 'libbio-scf-perl', 'texlive-latex-extra-doc', 'mysql-server', 'libnettle4:amd64', 'tex-gyre', 'libdrm-nouveau1a:amd64', 'libjcommon-java', 'python3-pkg-resources', 'libmpc3:amd64', 'libio-html-perl', 'libpython2.7:amd64', 'gnome-mime-data', 'python-egenix-mxdatetime', 'gnuplot-nox', 'glpk-utils', 'libp11-kit0:amd64', 'python-gdata', 'libblas3', 'r-cran-maps', 'bzip2-doc', 'libgomp1:amd64', 'rnahybrid', 'libcommons-discovery-java', 'libboost-date-time1.55.0:amd64', 'cpp-4.9', 'libjson0:amd64', 'openmpi-common', 'texlive-pictures-doc', 'ballview', 'dconf-gsettings-backend:amd64', 'gnustep-gui-runtime', 'libcommons-jexl2-java', 'velvet', 'gromacs', 'libcommons-collections-java', 'libdrm-nouveau2:amd64', 'fonts-cmu', 'icedtea-6-jre-cacao:amd64', 'fonts-cabin', 'libsane:amd64', 'libopengl-perl', 'liblcms1:amd64', 'r-cran-sendmailr', 'idba', 'liblensfun0', 'liblzo2-2:amd64', 'openssl', 'r-bioc-biostrings', 'prodigal', 'libmail-java', 'libhwloc-plugins', 'fonts-crosextra-caladea', 'libpcrecpp0:amd64', 'libgusb2:amd64', 'python-pyfits', 'libxml-simple-perl', 'r-cran-codetools', 'python-sphinx', 'libconfig-inifiles-perl', 'lua-lpeg:amd64', 'liblcms2-2:amd64', 'python-renderpm:amd64', 'gnustep-base-runtime', 'gnuplot-tex', 'embassy-domainatrix', 'libqt4-xmlpatterns:amd64', 'clustalw', 'libcsiro0:amd64', 'libopenjpeg5:amd64', 'phyml', 'liborc-0.4-0:amd64', 'clustalo', 'python-chardet', 'libb-hooks-endofscope-perl', 'libglapi-mesa:amd64', 'libqtwebkit4:amd64', 'libglade2-0:amd64', 'libcurl3:amd64', 'ray', 'libhsqldb-java', 'x11proto-kb-dev', 'librelion-1.3-1:amd64', 'openmpi-checkpoint', 'gff2aplot', 'libboost-regex1.55.0:amd64', 'python-multipletau', 'java-wrappers', 'libhwloc5:amd64', 'libfreehep-graphicsio-svg-java', 'exonerate', 'qiime-data', 'isc-dhcp-client', 'amap-align', 'libcdparanoia0:amd64', 'libfreehep-graphicsio-java', 'libvte-common', 'libdata-dumper-simple-perl', 'colord', 'r-cran-dichromat', 'biosquid', 'mysql-common', 'soapdenovo', 'libterm-ui-perl', 'libfreehep-swing-java', 'libgmp10:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'menu', 'r-cran-rpart', 'libgdbm3:amd64', 'dotur', 'libcurl3-gnutls:amd64', 'libxcb-dri3-0:amd64', 'tabix', 'python-glade2', 'flexbar', 'libxinerama1:amd64', 'r-bioc-xvector', 'libglib2.0-0:amd64', 'libusb-1.0-0:amd64', 'libbsd0:amd64', 'patch', 'r-cran-matrixstats', 'maqview', 'libaspell15:amd64', 'libxerces-c3.1:amd64', 'apache2-utils', 'libgtextutils0:amd64', 'libossp-uuid-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'fonts-gfs-solomos', 'libllvm3.5:amd64', 'probabel', 'libmath-random-mt-perl', 'emboss-lib', 'lesstif2:amd64', 'libswitch-perl', 'anfo', 'sigma-align', 'qiime', 'profnet-con', 'r-cran-g.data', 'libio-sessiondata-perl', 'ant-contrib', 'libunwind8', 'libsm-dev:amd64', 'libanyevent-cachedns-perl', 'libhtml-parser-perl', 'libjson-glib-1.0-0:amd64', 'libdata-stag-perl', 'binfmt-support', 'libxcb-sync1:amd64', 'libcanberra0:amd64', 'phylip', 'libaudio2:amd64', 'r-cran-testthat', 'circos-tools', 'perl-tk', 'pyscanfcs', 'conservation-code', 'mrbayes', 'libjgoodies-common-java', 'python-wxgtk3.0', 'libmath-bezier-perl', 'libboost-date-time1.49.0', 'libfontconfig1:amd64', 'libxml-dom-xpath-perl', 'libfile-fcntllock-perl', 'netbase', 'figtree', 'libxcb-glx0:amd64', 'libpod-latex-perl', 'apache2-data', 'profbval', 'libspreadsheet-writeexcel-perl', 'liblwp-mediatypes-perl', 'r-bioc-cummerbund', 'libxt6:amd64', 'libijs-0.35:amd64', 'freeglut3:amd64', 'r-bioc-genomicalignments', 'zlib1g-dev:amd64', 'libxml-sax-writer-perl', 'libglew1.10:amd64', 'libasprintf0c2:amd64', 'libsctp1:amd64', 'samtools', 'make', 'libjets3t-java', 'libopenbabel4', 'libjswingreader-java', 'concavity', 'libxaw7:amd64', 'libsasl2-modules-db:amd64', 'perlprimer', 'topp', 'libpaper1:amd64', 'garlic', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'jmol', 'ca-certificates', 'librsvg2-2:amd64', 'libdbi-perl', 'fonts-gfs-neohellenic', 'clonalframe', 'librg-reprof-bundle-perl', 'pynast', 'libfftw3-single3:amd64', 'python-roman', 'r-cran-mapproj', 'fonts-ebgaramond-extra', 'libtext-soundex-perl', 'gromacs-data', 'melting', 'libgnome-2-0:amd64', 'xbitmaps', 'libavahi-client3:amd64', 'libelk0', 'r-cran-formula', 'libxi6:amd64', 'rasmol', 'pycorrfit', 'libtree-dagnode-perl', 'libset-intspan-perl', 'tigr-glimmer', 'norsp', 'junit4', 'libball1.4', 'libwxgtk2.8-0:amd64', 'fonts-stix', 'openssh-client', 'giira', 'libprotobuf9:amd64', 'libquadmath0:amd64', 'libcolamd2.8.0:amd64', 'libsqlite3-0:amd64', 'openjdk-7-jdk:amd64', 'dialign-tx', 'libxml-twig-perl', 'libjson-c2:amd64', 'libcommons-pool-java', 'tasksel', 'libxau6:amd64', 'libfile-which-perl', 'libxcomposite1:amd64', 'discosnp', 'libpthread-stubs0:amd64', 'libgs9', 'libatk-bridge2.0-0:amd64', 'libapache-pom-java', 'libxml-perl', 'libsys-hostname-long-perl', 'libpython2.7-dev:amd64', 'python-reportlab-accel:amd64', 'ruby2.1', 'cdbs', 'update-inetd', 'libjbig0:amd64', 'libjsoncpp0', 'libxml-commons-resolver1.1-java', 'librole-tiny-perl', 'cdbfasta', 'libcache-cache-perl', 'libxcursor1:amd64', 'libbiojava-java', 'ttf-freefont', 'libgtk-3-bin', 'libalgorithm-diff-perl', 'libtre5:amd64', 'jmol-applet', 'r-cran-rcurl', 'ifupdown', 'texlive-fonts-extra-doc', 'fonts-lobstertwo', 'libyaml-syck-perl', 'mknfonts.tool', 'r-bioc-rtracklayer', 'libsynctex1', 'r-cran-domc', 'libnih-dbus1', 'libreadline6-dev:amd64', 'libboost-regex1.49.0', 'libvorbisenc2:amd64', 'libxcb-dri2-0:amd64', 'acedb-other', 'libvisual-0.4-0:amd64', 'libbsd-resource-perl', 'aragorn', 'libdbd-mysql-perl', 'libsort-naturally-perl', 'libogg0:amd64', 'libcdt5', 'libcdt4', 'r-cran-bitops', 'r-cran-gtable', 'r-cran-abind', 'sibsim4', 'libv4l-0:amd64', 'texlive-latex-base-doc', 'libpcre3-dev:amd64', 'libproj0', 'libjzlib-java', 'librg-utils-perl', 'python3.4-minimal', 'wise-data', 'libgstreamer1.0-0:amd64', 'libtext-template-perl', 'ufraw-batch', 'hmmer2', 'libmysql-java', 'python-qcli', 'ghostscript', 'apbs', 'libzzip-0-13:amd64', 'libxml-sax-perl', 'libasan1:amd64', 'r-cran-sp', 'libsvm3', 'libcgi-session-perl', 'libalgorithm-munkres-perl', 'libbio-perl-perl', 'r-cran-mass', 'libperl4-corelibs-perl', 'libxml-dom-perl', 'libgsl0ldbl', 'ncbi-tools-x11', 'mafft', 'libgettextpo0:amd64', 'libfreecontact0', 'libcrypt-ssleay-perl', 'libfltk-images1.3:amd64', 'gawk', 'libjbzip2-java', 'libgmp-dev:amd64', 'libboost-iostreams1.49.0', 'ltrsift', 'fonts-texgyre', 'libruby2.1:amd64', 'librtmp0:amd64', 'python-pysam', 'libhtml-tagset-perl', 'libbcpkix-java', 'libxmlrpc-lite-perl', 'texlive-binaries', 'jalview', 'proalign', 'ant-optional', 'libsvg-perl', 'libclass-isa-perl', 'x11-xserver-utils', 'libfann2:amd64', 'libnamespace-clean-perl', 'perm', 'perl', 'libflite1:amd64', 'emacsen-common', 'libtasn1-6:amd64', 'libjpeg8-dev:amd64', 'libbcmail-java', 'libhamcrest-java', 'ksh', 'libpython-all-dev:amd64', 'swi-prolog-nox', 'libopenms1.11', 'libhttpmime-java', 'r-cran-fail', 'ncbi-tools-bin', 'libpython2.7-minimal:amd64', 'libev-perl', 'liblapack3', 'python3-nose', 'libjasper1:amd64', 'maq', 'ssake', 'mothur', 'libsane-common', 'texlive-fonts-recommended', 'libcommons-compress-java', 'libqhull5', 'libnb-org-openide-util-lookup-java', 'libwrap0:amd64', 'jellyfish', 'gconf2', 'r-cran-base64enc', 'libxml-commons-external-java', 'libgd-svg-perl', 'fonts-liberation', 'libmath-vec-perl', 'python-biopython', 'vcftools', 'graphviz', 'libjs-jquery', 'python-pygments', 'libatk-wrapper-java', 'r-cran-colorspace', 'libcilkrts5:amd64', 'libapache-mime4j-java', 'python-gmpy', 'libguard-perl', 'pp-popularity-contest', 'libfreehep-graphicsio-tests-java', 'libieee1284-3:amd64', 'libgtk-3-common', 'libfreehep-io-java', 'libpoppler-qt4-4:amd64', 'parsinsert', 'r-bioc-annotationdbi', 'r-cran-nnet', 'python-imaging', 'med-tasks', 'python-tk', 'libexiv2-13:amd64', 'libxerces2-java', 'r-cran-vegan', 'python-tz', 'fonts-freefont-otf', 'libwxbase3.0-0:amd64', 'libmagic1:amd64', 'bauble', 'libjdom1-java', 'blt', 'libdevel-stacktrace-perl', 'libutempter0', 'velvetoptimiser', 'tree-puzzle-doc', 'fonts-dejavu-extra', 'dictionaries-common', 'libwebpdemux1:amd64', 'libilmbase6:amd64', 'fontconfig-config', 'libxcb1-dev:amd64', 'libio-socket-ssl-perl', 'python-reportlab', 'r-cran-hwriter', 'libvisual-0.4-plugins:amd64', 'libpoppler46:amd64', 'libfreehep-graphicsio-pdf-java', 'libmysqlclient18:amd64', 'libthai-data', 'libdata-section-perl', 'libfftw3-long3:amd64', 'libgtk2.0-bin', 'gnustep-gui-common', 'libalgorithm-diff-xs-perl', 'tasksel-data', 'prime-phylo', 'libpvm3', 'xdg-user-dirs', 'r-cran-boot', 'libgraphviz-perl', 'libsasl2-modules:amd64', 'texlive-latex-extra', 'libnetpbm10', 'libzeep3.0', 'libfcgi-perl', 'python-docutils', 'libitext-java', 'libboost-filesystem1.49.0', 'soapdenovo2', 'libqtgui4:amd64', 'libvte9', 'python-gobject', 'tophat', 'libdate-calc-perl', 'hicolor-icon-theme', 'texlive-math-extra', 'rate4site', 'ant', 'loki', 'tree-puzzle', 'libubsan0:amd64', 'texlive-fonts-extra', 'staden', 'rtax', 'libimport-into-perl', 'lua-filesystem:amd64', 'libpadwalker-perl', 'libnet-http-perl', 'texlive-font-utils', 'python-biopython-doc', 'debhelper', 'fonts-sil-gentium', 'libxp6:amd64', 'libfile-copy-recursive-perl', 'libqt4-opengl:amd64', 'libexif12:amd64', 'r-cran-ape', 'libio-all-perl', 'libclass-method-modifiers-perl', 'libunicode-map-perl', 'libvamsas-client-java', 'mrs', 'fakeroot', 'libcommon-sense-perl', 'libcolord2:amd64', 'fastqc', 'libcofoja-java', 'texlive-fonts-recommended-doc', 'libsaxonb-java', 'iproute', 'libstrictures-perl', 'liblapack-dev', 'liblog-message-perl', 'liberror-perl', 'libexiv2-12', 'python-egenix-mxtools', 'fonts-font-awesome', 'libpciaccess0:amd64', 'libcanberra-gtk3-module:amd64', 'libhttpcore-java', 'libcommons-collections3-java', 'r-cran-matrix', 'libgcj-common', 'libgvc6', 'x11proto-input-dev', 'libk5crypto3:amd64', 'libisc-export95', 'fonts-gfs-olga', 'r-cran-reshape2', 'r-cran-rcolorbrewer', 'libjs-prototype', 'libxdot4', 'libicu48:amd64', 'texlive-extra-utils', 'libbamtools2.3.0', 'libsub-exporter-perl', 'blast2', 'libpolkit-backend-1-0:amd64', 'libelfg0:amd64', 'libparams-validate-perl', 'swi-prolog', 'microbiomeutil-data', 'liblzma-dev:amd64', 'libpod-readme-perl', 'libdate-manip-perl', 'libgnutls-deb0-28:amd64', 'libsam-java', 'libicu52:amd64', 'boxshade', 'libmpfr4:amd64', 'libvariable-magic-perl', 'ncbi-data', 'libmath-tamuanova-perl', 'cassiopee', 'profisis', 'librest-0.7-0:amd64', 'profphd', 'libatlas3-base', 'proj-data', 'libio-socket-ip-perl', 'libxpp3-java', 'libjava-xmlbuilder-java', 'prerex', 'libwxgtk3.0-0:amd64', 'libipc-run-perl', 'r-cran-genabel.data', 'libisl10:amd64', 'python3.4', 'libgtkglext1', 'ruby', 'gbrowse', 'libncurses5-dev:amd64', 'kalign', 'netpbm', 'python-all', 'libavahi-common3:amd64', 'ipig', 'libqtcore4:amd64', 'vprerex', 'texlive-base', 'libglpk-java', 'libfile-slurp-tiny-perl', 'libgl1-mesa-dri:amd64', 'mpqc', 'libxml-regexp-perl', 'libwmf0.2-7:amd64', 'libio-pty-perl', 'r-cran-tcltk2', 'libfile-homedir-perl', 'libcgraph5', 'libibverbs1', 'arden', 'libbytecode-java', 'manpages', 'python-biom-format', 'libnss3:amd64', 'circos', 'iso-codes', 'libwsdl4j-java', 'libwxbase2.8-0:amd64', 'libhttp-date-perl', 'python2.7-minimal', 'libcups2:amd64', 'python-all-dev', 'libxml-sax-expat-perl', 'libssh2-1:amd64', 'libwayland-client0:amd64', 'libpangoft2-1.0-0:amd64', 'libx11-dev:amd64', 'librelaxng-datatype-java', 'gasic', 'libdatrie1:amd64', 'xorg-sgml-doctools', 'apache2', 'r-recommended', 'libxom-java', 'texlive-generic-recommended', 'python-pyglet', 'libdjvulibre-text', 'libgraphics-colornames-perl', 'libjgoodies-forms-java', 'gstreamer1.0-plugins-base:amd64', 'apache2-bin', 'gettext-base', 'libgraphite2-3:amd64', 'libbambamc0', 'libsc-data', 'glam2', 'libgnustep-base1.24', 'libgnustep-base1.22', 'rsync', 'libfontenc1:amd64', 'libxtst6:amd64', 'libparams-classify-perl', 'poa', 'fonts-inconsolata', 'acedb-other-dotter', 'libsvg-graph-perl', 'libxkbcommon0:amd64', 'imagemagick-common', 'colord-data', 'liblqr-1-0:amd64', 'libfreetype6:amd64', 'icedtea-netx-common', 'libcfitsio2:amd64', 'libsane-extras-common', 'python-yaml', 'libcommons-dbcp-java', 'fonts-lyx', 'liboglappth2', 'libxshmfence1:amd64', 'libhttp-daemon-perl', 'notification-daemon', 'libfile-desktopentry-perl', 'libperlio-gzip-perl', 'liblua5.1-0:amd64', 'libxrender1:amd64', 'libjellyfish-2.0-2', 'texlive-pstricks', 'libgnomevfs2-common', 'libsquizz', 'libice6:amd64', 'libbiojava1.7-java', 'libdjvulibre21:amd64', 'libcneartree5:amd64', 'massxpert', 'libdevel-symdump-perl', 'libint1', 'x11-utils', 'libmagickcore-6.q16-2-extra:amd64', 'libfltk1.3:amd64', 'libgo-perl', 'texlive-latex-recommended-doc', 'file', 'gnustep-back0.24-cairo', 'liblist-allutils-perl', 'massxpert-data', 'filo', 'libgfortran3:amd64', 'libcupsfilters1:amd64', 'libgenometools0', 'perl-modules', 'python-sip', 'gettext', 'emboss-data', 'snp-sites', 'libstatistics-descriptive-perl', 'libjam-java', 'python-sqlalchemy-ext', 'libdpkg-perl', 'fasttree', 'libvorbisfile3:amd64', 'liblwp-protocol-https-perl', 'libqt4-test:amd64', 'libgnomevfs2-extra:amd64', 'libvm-ec2-perl', 'libc-dev-bin', 'cpp', 'libhogweed2:amd64', 'libspreadsheet-parseexcel-perl', 'dssp', 'java-common', 'libv4lconvert0:amd64', 'libcvector2:amd64', 'libxm4:amd64', 'r-base-dev', 'libpangoxft-1.0-0:amd64', 'r-cran-doparallel', 'fonts-gfs-complutum', 'libclass-c3-perl', 'libcairo-gobject2:amd64', 'libdom4j-java', 'libpipeline1:amd64', 'libtcl8.5:amd64', 'libkrb5-3:amd64', 'aspell-en', 'libtorque2', 'gfortran', 'libgd-graph-perl', 'smalt', 'libffindex0', 'microbiomeutil', 'treeviewx', 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'libatk1.0-0:amd64', 'r-bioc-hilbertvis', 'fonts-oflb-asana-math', 'libhtml-template-perl', 'fonts-lobster', 'r-cran-latticeextra', 'transtermhp', 'libice-dev:amd64', 'libpopt0:amd64', 'libcommons-net2-java', 'fastjar', 'libcommons-lang-java', 'libboost-serialization1.55.0:amd64', 'libnb-org-openide-util-java', 'libjs-sphinxdoc', 'libgd3:amd64', 'r-bioc-biovizbase', 'last-align', 'libhttpclient-java', 'python2.7', 'libasyncns0:amd64', 'fonts-dejavu', 'libtype-tiny-perl', 'libpolkit-agent-1-0:amd64', 'openjdk-7-jre-headless:amd64', 'openms', 'python-minimal', 'dmidecode', 'libldap-2.4-2:amd64', 'libgudev-1.0-0:amd64', 'clearcut', 'libts-0.0-0:amd64', 'libtk8.5:amd64', 'libdbd-sqlite3-perl', 'python-pkg-resources', 'libboost-random1.55.0:amd64', 'python-lxml', 'python-pyparsing', 'libperl5.20', 'libqhull6:amd64', 'libcupsimage2:amd64', 'zip', 'libgcc-4.9-dev:amd64', 'libxml-checker-perl', 'sphinx-doc', 'libb-hooks-op-check-perl', 'ttf-liberation', 'nast-ier', 'python-cairo', 'python-dateutil', 'gcc-4.9', 'libxml-libxml-perl', 'uc-echo', 'fonts-droid', 'libwww-robotrules-perl', 'tklib', 'libdns-export100', 'libjpeg62-turbo:amd64', 'libao4', 'libmiglayout-java', 'proftmb', 'libmotif-common', 'libvpx1:amd64', 'libpixman-1-0:amd64', 'gsettings-desktop-schemas', 'bedtools', 'libclass-c3-xs-perl', 'gcc', 'primer3', 'texlive-latex-recommended', 'libgettextpo-dev:amd64', 'fonts-lmodern', 'pyqi', 'libgtk2.0-common', 'libmodule-signature-perl', 'liburi-perl', 'libpcsclite1:amd64', 'libdconf1:amd64', 'logol-bin', 'libstaden-read1', 'adwaita-icon-theme', 'icedtea-netx:amd64', 'libwebpmux1:amd64', 'aevol', 'r-other-bio3d', 'fonts-comfortaa', 'libsqlite0', 'systemd-shim', 'biomaj', 'tex-common', 'libcloog-isl4:amd64', 'theseus', 'libgnuinet-java', 't-coffee', 'openjdk-6-jdk:amd64', 'prosper', 'docutils-doc', 'libsdl1.2debian:amd64', 'libxt-dev:amd64', 'libdbus-glib-1-2:amd64', 'libsoftware-license-perl', 'aspell', 'wigeon', 'gconf-service', 'python-pyrex', 'libthai0:amd64', 'metastudent-data-2', 'hmmer', 'r-cran-spatial', 'libxdmcp-dev:amd64', 'apache2.2-common', 'libmath-derivative-perl', 'libxml-sax-base-perl', 'liblog4j1.2-java', 'autodock-vina', 'libharfbuzz-icu0:amd64', 'at-spi2-core', 'bwa', 'libatm1:amd64', 'dialign-tx-data', 'libxrandr2:amd64', 'predictprotein', 'libhmsbeagle1', 'libanyevent-http-perl', 'libdate-calc-xs-perl', 'libglib2.0-data', 'libencode-locale-perl', 'glib-networking:amd64', 'libtheora0:amd64', 'prank', 'r-cran-ggplot2', 'python-mysqldb', 'libcastor-core-java', 'med-config', 'icedtea-6-jre-jamvm:amd64', 'libxss1:amd64', 'python-mock', 'mapsembler2', 'libgmpxx4ldbl:amd64', 'libmpc2:amd64', 'sane-utils', 'libavahi-glib1:amd64', 'psutils', 'fonts-junicode', 'libdevel-partialdump-perl', 'libisccfg-export90', 'python-mako', 'libproxy1:amd64', 'profphd-utils', 'libboost-iostreams1.55.0:amd64', 'openjdk-6-jre:amd64', 'gentle', 'libcarp-clan-perl', 'libjcode-pm-perl', 'libboost-math1.55.0:amd64', 'python-htseq', 'chimeraslayer', 'libhdf5-8:amd64', 'ncbi-epcr', 'python-mpmath', 'science-tasks', 'libcanberra-gtk3-0:amd64', 'libatspi2.0-0:amd64', 'r-cran-rsqlite', 'python-gtk2', 'libtdb1:amd64', 'libtamuanova-0.2', 'libbio-perl-run-perl', 'python-mpi4py', 'libgdk-pixbuf2.0-common', 'libnuma1:amd64', 'ttf-adf-universalis', 'libgeronimo-jta-1.1-spec-java', 'linux-libc-dev:amd64', 'libparams-util-perl', 'libcastor-xml-java', 'gnuplot-data', 'python-nose', 'freecontact', 'apache2.2-bin', 'lynx-cur', 'libfont-ttf-perl', 'grinder', 'libyaml-0-2:amd64', 'libtinfo-dev:amd64', 'python-gobject-2', 'infernal', 'libalgorithm-c3-perl', 'zalign', 'lksctp-tools', 'libfftw3-double3:amd64', 'libpthread-stubs0-dev:amd64', 'sgml-base', 'libgnome2-bin', 'libcommons-logging-java', 'liblexical-sealrequirehints-perl', 'libboost-chrono1.55.0:amd64', 'libisorelax-java', 'gnustep-back-common', 'libmath-round-perl', 'libasprintf-dev:amd64', 'libtcl8.6:amd64', 'libdevel-lexalias-perl', 'r-cran-dbi', 'libjpeg8:amd64', 'bsdmainutils', 'groff-base', 'glib-networking-common', 'libqt4-sql-mysql:amd64', 'libgphoto2-l10n', 'libtype-tiny-xs-perl', 'g++', 'aglfn', 'libxmuu1:amd64', 'qtcore4-l10n', 'libpolkit-gobject-1-0:amd64', 'squizz', 'libheap-perl', 'libmaloc1', 'libpango1.0-0:amd64', 'libjs-jquery-ui', 'seaview', 'plasmidomics', 'libharfbuzz0b:amd64', 'r-cran-kernsmooth', 'libbit-vector-perl', 'libxcb-present0:amd64', 'neobio', 'libpangox-1.0-0:amd64', 'openjdk-6-jre-headless:amd64', 'libdevel-globaldestruction-perl', 'glib-networking-services', 'libsub-identify-perl', 'lmodern', 'libjson-perl', 'r-doc-html', 'libpaper-utils', 'libservlet2.5-java', 'heirloom-mailx', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'metastudent-data', 'ttf-dejavu-core', 'libmng1:amd64', 'libpod-coverage-perl', 'fastdnaml', 'rename', 'libsub-exporter-progressive-perl', 'libqt4-network:amd64', 'libgnustep-gui0.24', 'libgnustep-gui0.20', 'libkpathsea6', 'libindirect-perl', 'libbz2-dev:amd64', 'libjbig2dec0', 'libtiff4:amd64', 'python', 'libboost-mpi1.55.0', 'libgnumail-java', 'libpango-1.0-0:amd64', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'python-six', 'libsoup-gnome2.4-1:amd64', 'embassy-domsearch', 'tk8.6-blt2.5', 'r-cran-labeling', 'libtablelayout-java', 'libjson-xs-perl', 'r-cran-lattice', 'muscle', 'libexporter-tiny-perl', 'laptop-detect', 'texlive-pstricks-doc', 'tcl', 'libmailtools-perl', 'swi-prolog-x', 'kissplice', 'metastudent', 'libmodule-build-perl', 'libpulse0:amd64', 'libsc7', 'fonts-lato', 'libc6-dev:amd64', 'r-cran-genabel', 'ttf-adf-accanthis', 'libgfortran-4.9-dev:amd64', 'libbareword-filehandles-perl', 'r-bioc-genomicfeatures', 'libmpdec2:amd64', 'libpng12-0:amd64', 'r-bioc-biobase', 'tcl8.6', 'python3', 'libpython-stdlib:amd64', 'libsystemd-login0:amd64', 'libedit2:amd64', 'r-cran-fastcluster', 'docutils-common', 'liblog-message-simple-perl', 'shared-mime-info', 'libsoap-lite-perl', 'ncbi-seg', 'javahelp2', 'seqtk', 'libcgmanager0:amd64', 'texlive-pictures', 'libsndfile1:amd64', 'phyutility', 'tk', 'libclass-tiny-perl', 'libxdmcp6:amd64', 'libasound2:amd64', 'probcons', 'libcommons-cli-java', 'r-cran-pkgkitten', 'libghemical-data', 'librtmp1:amd64', 'r-cran-survival', 'genometools-common', 'xml-core', 'r-cran-chron', 'libgphoto2-6:amd64', 'plink', 'libjebl2-java', 'libmagickcore5:amd64', 'libxv1:amd64', 'mira-assembler', 'gfortran-4.9', 'x11-common', 'groff', 'r-cran-checkmate', 'libxau-dev:amd64', 'libruby1.9.1', 'libcommons-io-java', 'libtask-weaken-perl', 'libglew1.7:amd64', 'wise', 'lynx', 'libio-string-perl', 'python-pmw', 'libx11-data', 'libgnujaf-java', 'libaprutil1:amd64', 'gamgi', 'libxml-xpath-perl', 'libmldbm-perl', 'bzip2', 'r-bioc-biocgenerics', 'libx11-protocol-perl', 'libtest-pod-perl', 'libxfixes3:amd64', 'libplplot11', 'dpkg-dev', 'libcommons-net1-java', 'libconvert-binary-c-perl', 'libsprng2', 'libtcmalloc-minimal4', 'libmodule-implementation-perl', 'libjaxme-java', 'libboost-thread1.49.0', 'libxml-writer-perl'] 20m21.9s 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Purging configuration files for mysql-server-5.5 (5.5.58-0+deb8u1) ... dpkg: warning: while removing mysql-server-5.5, directory '/etc/mysql' not empty so not removed dpkg: warning: while removing mysql-server-5.5, directory '/etc/apparmor.d' not empty so not removed dpkg: warning: ignoring request to remove relion-bin which isn't installed dpkg: warning: ignoring request to remove python-ball which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed Removing man-db (2.7.0.2-5) ... Purging configuration files for man-db (2.7.0.2-5) ... Removing catpages as well as /var/cache/man hierarchy. dpkg: warning: ignoring request to remove libfile-chdir-perl which isn't installed Removing libapache2-mod-perl2 (2.0.9~1624218-2+deb8u2) ... 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Purging configuration files for tk8.6-blt2.5 (2.5.3+dfsg-1) ... dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove libtablelayout-java which isn't installed dpkg: warning: ignoring request to remove libjson-xs-perl which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove laptop-detect which isn't installed Removing texlive-pstricks-doc (2014.20141024-1) ... Purging configuration files for texlive-pstricks-doc (2014.20141024-1) ... dpkg: warning: ignoring request to remove tcl which isn't installed dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed Removing swi-prolog-x (6.6.6-5) ... Purging configuration files for swi-prolog-x (6.6.6-5) ... dpkg: warning: ignoring request to remove kissplice which isn't installed dpkg: warning: ignoring request to remove metastudent which isn't installed Removing libmodule-build-perl (0.421000-2+deb8u1) ... Purging configuration files for libmodule-build-perl (0.421000-2+deb8u1) ... Removing libpulse0:amd64 (5.0-13) ... Purging configuration files for libpulse0:amd64 (5.0-13) ... Removing libsc7 (2.3.1-16) ... Purging configuration files for libsc7 (2.3.1-16) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove r-cran-genabel which isn't installed dpkg: warning: ignoring request to remove ttf-adf-accanthis which isn't installed dpkg: warning: ignoring request to remove libgfortran-4.9-dev which isn't installed dpkg: warning: ignoring request to remove libbareword-filehandles-perl which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicfeatures which isn't installed Removing libmpdec2:amd64 (2.4.1-1) ... Purging configuration files for libmpdec2:amd64 (2.4.1-1) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed Removing tcl8.6 (8.6.2+dfsg-2) ... Purging configuration files for tcl8.6 (8.6.2+dfsg-2) ... Removing python3 (3.4.2-2) ... Purging configuration files for python3 (3.4.2-2) ... dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Removing libsystemd-login0:amd64 (215-17+deb8u7) ... Purging configuration files for libsystemd-login0:amd64 (215-17+deb8u7) ... Removing libedit2:amd64 (3.1-20140620-2) ... Purging configuration files for libedit2:amd64 (3.1-20140620-2) ... dpkg: warning: ignoring request to remove r-cran-fastcluster which isn't installed Removing docutils-common (0.12+dfsg-1) ... Purging configuration files for docutils-common (0.12+dfsg-1) ... dpkg: warning: ignoring request to remove liblog-message-simple-perl which isn't installed Removing shared-mime-info (1.3-1) ... Purging configuration files for shared-mime-info (1.3-1) ... dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove ncbi-seg which isn't installed dpkg: warning: ignoring request to remove javahelp2 which isn't installed dpkg: warning: ignoring request to remove seqtk which isn't installed Removing libcgmanager0:amd64 (0.33-2+deb8u2) ... Purging configuration files for libcgmanager0:amd64 (0.33-2+deb8u2) ... Removing texlive-pictures (2014.20141024-2+deb8u1) ... Purging configuration files for texlive-pictures (2014.20141024-2+deb8u1) ... Removing libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... Purging configuration files for libsndfile1:amd64 (1.0.25-9.1+deb8u1) ... dpkg: warning: ignoring request to remove phyutility which isn't installed dpkg: warning: ignoring request to remove tk which isn't installed dpkg: warning: ignoring request to remove libclass-tiny-perl which isn't installed Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+b1) ... Removing libasound2:amd64 (1.0.28-1) ... Purging configuration files for libasound2:amd64 (1.0.28-1) ... dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove libghemical-data which isn't installed Removing librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... Purging configuration files for librtmp1:amd64 (2.4+20150115.gita107cef-1+deb8u1) ... dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove genometools-common which isn't installed Removing xml-core (0.13+nmu2) ... Purging configuration files for xml-core (0.13+nmu2) ... dpkg: warning: ignoring request to remove r-cran-chron which isn't installed Removing libgphoto2-6:amd64 (2.5.4-1.1+b2) ... Purging configuration files for libgphoto2-6:amd64 (2.5.4-1.1+b2) ... dpkg: warning: ignoring request to remove plink which isn't installed dpkg: warning: ignoring request to remove libjebl2-java which isn't installed Removing libmagickcore5:amd64 (8:6.7.7.10-5+deb7u4) ... Purging configuration files for libmagickcore5:amd64 (8:6.7.7.10-5+deb7u4) ... Removing libxv1:amd64 (2:1.0.10-1+deb8u1) ... Purging configuration files for libxv1:amd64 (2:1.0.10-1+deb8u1) ... dpkg: warning: ignoring request to remove mira-assembler which isn't installed dpkg: warning: ignoring request to remove gfortran-4.9 which isn't installed Removing x11-common (1:7.7+7) ... Purging configuration files for x11-common (1:7.7+7) ... Removing groff (1.22.2-8) ... Purging configuration files for groff (1.22.2-8) ... dpkg: warning: ignoring request to remove r-cran-checkmate which isn't installed dpkg: warning: ignoring request to remove libxau-dev which isn't installed Removing libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... Purging configuration files for libruby1.9.1 (1.9.3.194-8.1+deb7u5) ... dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed Removing libglew1.7:amd64 (1.7.0-3) ... Purging configuration files for libglew1.7:amd64 (1.7.0-3) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove lynx which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove python-pmw which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libgnujaf-java which isn't installed Removing libaprutil1:amd64 (1.5.4-1) ... Purging configuration files for libaprutil1:amd64 (1.5.4-1) ... dpkg: warning: ignoring request to remove gamgi which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove libx11-protocol-perl which isn't installed dpkg: warning: ignoring request to remove libtest-pod-perl which isn't installed Removing libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Purging configuration files for libxfixes3:amd64 (1:5.0.1-2+deb8u1) ... Removing libplplot11 (5.9.9-5) ... Purging configuration files for libplplot11 (5.9.9-5) ... Removing dpkg-dev (1.17.27) ... Purging configuration files for dpkg-dev (1.17.27) ... dpkg: warning: ignoring request to remove libcommons-net1-java which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed Removing libsprng2 (2.0a-8) ... Purging configuration files for libsprng2 (2.0a-8) ... Removing libtcmalloc-minimal4 (2.2.1-0.2) ... Purging configuration files for libtcmalloc-minimal4 (2.2.1-0.2) ... dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libjaxme-java which isn't installed Removing libboost-thread1.49.0 (1.49.0-3.2) ... Purging configuration files for libboost-thread1.49.0 (1.49.0-3.2) ... dpkg: warning: ignoring request to remove libxml-writer-perl which isn't installed 20m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg', '--purge', 'libsigsegv2:amd64', 'python-scipy', 'python-ballview', 'libelf1:amd64', 'python-pysqlite2', 'libgssapi-krb5-2:amd64', 'libargtable2-0', 'libbio-graphics-perl', 'libnspr4:amd64', 'libmro-compat-perl', 'liblsan0:amd64', 'libxdamage1:amd64', 'libpangocairo-1.0-0:amd64', 'libpq5:amd64', 'cgmanager', 'profnet-md', 'profnet-isis', 'libio-stringy-perl', 'libreadonly-perl', 'fonts-gfs-didot', 'med-bio', 'libgnomevfs2-0:amd64', 'libprocps0:amd64', 'r-bioc-variantannotation', 'xsltproc', 'libbonobo2-common', 'dialign', 'tk-table', 'imagemagick-6.q16', 'libpython3-stdlib:amd64', 'ruby1.9.1', 'libdrm2:amd64', 'libdbd-pg-perl', 'r-cran-getopt', 'libpython-dev:amd64', 'lua-md5:amd64', 'tipa', 'libgraph4', 'libfreehep-graphics2d-java', 'libmoo-perl', 'libcassie1', 'libipc-sharelite-perl', 'libset-scalar-perl', 'libmsv-java', 'ttf-dejavu-extra', 'libxft2:amd64', 'autogrid', 'libatomic1:amd64', 'picard-tools', 'libapr1:amd64', 'ampliconnoise', 'r-cran-munsell', 'libossp-uuid16:amd64', 'libtasn1-3:amd64', 'bioperl', 'libgetopt-simple-perl', 'libgirepository-1.0-1:amd64', 'libdigest-perl-md5-perl', 'reprof', 'libgtk2.0-0:amd64', 'dconf-service', 'libdb5.1:amd64', 'libbonobo2-0:amd64', 'populations', 'tzdata-java', 'gnustep-base-common', 'intltool-debian', 'libbackport-util-concurrent-java', 'libvibrant6a:amd64', 'libtsan0:amd64', 'disulfinder', 'mpi-default-bin', 'libcairo2:amd64', 'perl-doc', 'r-bioc-bsgenome', 'openjdk-7-jre:amd64', 'seqan-apps', 'python-pexpect', 'mlv-smile', 'fastlink', 'libmodule-runtime-perl', 'njplot', 'libxslt1.1:amd64', 'hhsuite', 'libjsch-java', 'libpotrace0', 'fonts-gfs-artemisia', 'libgraphics-colorobject-perl', 'libmultidimensional-perl', 'bamtools', 'libidn11:amd64', 'bowtie2', 'libkrb5support0:amd64', 'fonts-sil-gentium-basic', 'libglpk36:amd64', 'ncoils', 'libjson-glib-1.0-common', 'python-support', 'fonts-freefont-ttf', 'libbio-scf-perl', 'texlive-latex-extra-doc', 'mysql-server', 'libnettle4:amd64', 'tex-gyre', 'libdrm-nouveau1a:amd64', 'libjcommon-java', 'python3-pkg-resources', 'libmpc3:amd64', 'libio-html-perl', 'libpython2.7:amd64', 'gnome-mime-data', 'python-egenix-mxdatetime', 'gnuplot-nox', 'glpk-utils', 'libp11-kit0:amd64', 'python-gdata', 'libblas3', 'r-cran-maps', 'bzip2-doc', 'libgomp1:amd64', 'rnahybrid', 'libcommons-discovery-java', 'libboost-date-time1.55.0:amd64', 'cpp-4.9', 'libjson0:amd64', 'openmpi-common', 'texlive-pictures-doc', 'ballview', 'dconf-gsettings-backend:amd64', 'gnustep-gui-runtime', 'libcommons-jexl2-java', 'velvet', 'gromacs', 'libcommons-collections-java', 'libdrm-nouveau2:amd64', 'fonts-cmu', 'icedtea-6-jre-cacao:amd64', 'fonts-cabin', 'libsane:amd64', 'libopengl-perl', 'liblcms1:amd64', 'r-cran-sendmailr', 'idba', 'liblensfun0', 'liblzo2-2:amd64', 'openssl', 'r-bioc-biostrings', 'prodigal', 'libmail-java', 'libhwloc-plugins', 'fonts-crosextra-caladea', 'libpcrecpp0:amd64', 'libgusb2:amd64', 'python-pyfits', 'libxml-simple-perl', 'r-cran-codetools', 'python-sphinx', 'libconfig-inifiles-perl', 'lua-lpeg:amd64', 'liblcms2-2:amd64', 'python-renderpm:amd64', 'gnustep-base-runtime', 'gnuplot-tex', 'embassy-domainatrix', 'libqt4-xmlpatterns:amd64', 'clustalw', 'libcsiro0:amd64', 'libopenjpeg5:amd64', 'phyml', 'liborc-0.4-0:amd64', 'clustalo', 'python-chardet', 'libb-hooks-endofscope-perl', 'libglapi-mesa:amd64', 'libqtwebkit4:amd64', 'libglade2-0:amd64', 'libcurl3:amd64', 'ray', 'libhsqldb-java', 'x11proto-kb-dev', 'librelion-1.3-1:amd64', 'openmpi-checkpoint', 'gff2aplot', 'libboost-regex1.55.0:amd64', 'python-multipletau', 'java-wrappers', 'libhwloc5:amd64', 'libfreehep-graphicsio-svg-java', 'exonerate', 'qiime-data', 'isc-dhcp-client', 'amap-align', 'libcdparanoia0:amd64', 'libfreehep-graphicsio-java', 'libvte-common', 'libdata-dumper-simple-perl', 'colord', 'r-cran-dichromat', 'biosquid', 'mysql-common', 'soapdenovo', 'libterm-ui-perl', 'libfreehep-swing-java', 'libgmp10:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'menu', 'r-cran-rpart', 'libgdbm3:amd64', 'dotur', 'libcurl3-gnutls:amd64', 'libxcb-dri3-0:amd64', 'tabix', 'python-glade2', 'flexbar', 'libxinerama1:amd64', 'r-bioc-xvector', 'libglib2.0-0:amd64', 'libusb-1.0-0:amd64', 'libbsd0:amd64', 'patch', 'r-cran-matrixstats', 'maqview', 'libaspell15:amd64', 'libxerces-c3.1:amd64', 'apache2-utils', 'libgtextutils0:amd64', 'libossp-uuid-perl', 'libgcrypt11:amd64', 'libfont-afm-perl', 'fonts-gfs-solomos', 'libllvm3.5:amd64', 'probabel', 'libmath-random-mt-perl', 'emboss-lib', 'lesstif2:amd64', 'libswitch-perl', 'anfo', 'sigma-align', 'qiime', 'profnet-con', 'r-cran-g.data', 'libio-sessiondata-perl', 'ant-contrib', 'libunwind8', 'libsm-dev:amd64', 'libanyevent-cachedns-perl', 'libhtml-parser-perl', 'libjson-glib-1.0-0:amd64', 'libdata-stag-perl', 'binfmt-support', 'libxcb-sync1:amd64', 'libcanberra0:amd64', 'phylip', 'libaudio2:amd64', 'r-cran-testthat', 'circos-tools', 'perl-tk', 'pyscanfcs', 'conservation-code', 'mrbayes', 'libjgoodies-common-java', 'python-wxgtk3.0', 'libmath-bezier-perl', 'libboost-date-time1.49.0', 'libfontconfig1:amd64', 'libxml-dom-xpath-perl', 'libfile-fcntllock-perl', 'netbase', 'figtree', 'libxcb-glx0:amd64', 'libpod-latex-perl', 'apache2-data', 'profbval', 'libspreadsheet-writeexcel-perl', 'liblwp-mediatypes-perl', 'r-bioc-cummerbund', 'libxt6:amd64', 'libijs-0.35:amd64', 'freeglut3:amd64', 'r-bioc-genomicalignments', 'zlib1g-dev:amd64', 'libxml-sax-writer-perl', 'libglew1.10:amd64', 'libasprintf0c2:amd64', 'libsctp1:amd64', 'samtools', 'make', 'libjets3t-java', 'libopenbabel4', 'libjswingreader-java', 'concavity', 'libxaw7:amd64', 'libsasl2-modules-db:amd64', 'perlprimer', 'topp', 'libpaper1:amd64', 'garlic', 'libirs-export91', 'libxpm4:amd64', 'javascript-common', 'liblist-moreutils-perl', 'jmol', 'ca-certificates', 'librsvg2-2:amd64', 'libdbi-perl', 'fonts-gfs-neohellenic', 'clonalframe', 'librg-reprof-bundle-perl', 'pynast', 'libfftw3-single3:amd64', 'python-roman', 'r-cran-mapproj', 'fonts-ebgaramond-extra', 'libtext-soundex-perl', 'gromacs-data', 'melting', 'libgnome-2-0:amd64', 'xbitmaps', 'libavahi-client3:amd64', 'libelk0', 'r-cran-formula', 'libxi6:amd64', 'rasmol', 'pycorrfit', 'libtree-dagnode-perl', 'libset-intspan-perl', 'tigr-glimmer', 'norsp', 'junit4', 'libball1.4', 'libwxgtk2.8-0:amd64', 'fonts-stix', 'openssh-client', 'giira', 'libprotobuf9:amd64', 'libquadmath0:amd64', 'libcolamd2.8.0:amd64', 'libsqlite3-0:amd64', 'openjdk-7-jdk:amd64', 'dialign-tx', 'libxml-twig-perl', 'libjson-c2:amd64', 'libcommons-pool-java', 'tasksel', 'libxau6:amd64', 'libfile-which-perl', 'libxcomposite1:amd64', 'discosnp', 'libpthread-stubs0:amd64', 'libgs9', 'libatk-bridge2.0-0:amd64', 'libapache-pom-java', 'libxml-perl', 'libsys-hostname-long-perl', 'libpython2.7-dev:amd64', 'python-reportlab-accel:amd64', 'ruby2.1', 'cdbs', 'update-inetd', 'libjbig0:amd64', 'libjsoncpp0', 'libxml-commons-resolver1.1-java', 'librole-tiny-perl', 'cdbfasta', 'libcache-cache-perl', 'libxcursor1:amd64', 'libbiojava-java', 'ttf-freefont', 'libgtk-3-bin', 'libalgorithm-diff-perl', 'libtre5:amd64', 'jmol-applet', 'r-cran-rcurl', 'ifupdown', 'texlive-fonts-extra-doc', 'fonts-lobstertwo', 'libyaml-syck-perl', 'mknfonts.tool', 'r-bioc-rtracklayer', 'libsynctex1', 'r-cran-domc', 'libnih-dbus1', 'libreadline6-dev:amd64', 'libboost-regex1.49.0', 'libvorbisenc2:amd64', 'libxcb-dri2-0:amd64', 'acedb-other', 'libvisual-0.4-0:amd64', 'libbsd-resource-perl', 'aragorn', 'libdbd-mysql-perl', 'libsort-naturally-perl', 'libogg0:amd64', 'libcdt5', 'libcdt4', 'r-cran-bitops', 'r-cran-gtable', 'r-cran-abind', 'sibsim4', 'libv4l-0:amd64', 'texlive-latex-base-doc', 'libpcre3-dev:amd64', 'libproj0', 'libjzlib-java', 'librg-utils-perl', 'python3.4-minimal', 'wise-data', 'libgstreamer1.0-0:amd64', 'libtext-template-perl', 'ufraw-batch', 'hmmer2', 'libmysql-java', 'python-qcli', 'ghostscript', 'apbs', 'libzzip-0-13:amd64', 'libxml-sax-perl', 'libasan1:amd64', 'r-cran-sp', 'libsvm3', 'libcgi-session-perl', 'libalgorithm-munkres-perl', 'libbio-perl-perl', 'r-cran-mass', 'libperl4-corelibs-perl', 'libxml-dom-perl', 'libgsl0ldbl', 'ncbi-tools-x11', 'mafft', 'libgettextpo0:amd64', 'libfreecontact0', 'libcrypt-ssleay-perl', 'libfltk-images1.3:amd64', 'gawk', 'libjbzip2-java', 'libgmp-dev:amd64', 'libboost-iostreams1.49.0', 'ltrsift', 'fonts-texgyre', 'libruby2.1:amd64', 'librtmp0:amd64', 'python-pysam', 'libhtml-tagset-perl', 'libbcpkix-java', 'libxmlrpc-lite-perl', 'texlive-binaries', 'jalview', 'proalign', 'ant-optional', 'libsvg-perl', 'libclass-isa-perl', 'x11-xserver-utils', 'libfann2:amd64', 'libnamespace-clean-perl', 'perm', 'perl', 'libflite1:amd64', 'emacsen-common', 'libtasn1-6:amd64', 'libjpeg8-dev:amd64', 'libbcmail-java', 'libhamcrest-java', 'ksh', 'libpython-all-dev:amd64', 'swi-prolog-nox', 'libopenms1.11', 'libhttpmime-java', 'r-cran-fail', 'ncbi-tools-bin', 'libpython2.7-minimal:amd64', 'libev-perl', 'liblapack3', 'python3-nose', 'libjasper1:amd64', 'maq', 'ssake', 'mothur', 'libsane-common', 'texlive-fonts-recommended', 'libcommons-compress-java', 'libqhull5', 'libnb-org-openide-util-lookup-java', 'libwrap0:amd64', 'jellyfish', 'gconf2', 'r-cran-base64enc', 'libxml-commons-external-java', 'libgd-svg-perl', 'fonts-liberation', 'libmath-vec-perl', 'python-biopython', 'vcftools', 'graphviz', 'libjs-jquery', 'python-pygments', 'libatk-wrapper-java', 'r-cran-colorspace', 'libcilkrts5:amd64', 'libapache-mime4j-java', 'python-gmpy', 'libguard-perl', 'pp-popularity-contest', 'libfreehep-graphicsio-tests-java', 'libieee1284-3:amd64', 'libgtk-3-common', 'libfreehep-io-java', 'libpoppler-qt4-4:amd64', 'parsinsert', 'r-bioc-annotationdbi', 'r-cran-nnet', 'python-imaging', 'med-tasks', 'python-tk', 'libexiv2-13:amd64', 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'python-gtk2', 'libtdb1:amd64', 'libtamuanova-0.2', 'libbio-perl-run-perl', 'python-mpi4py', 'libgdk-pixbuf2.0-common', 'libnuma1:amd64', 'ttf-adf-universalis', 'libgeronimo-jta-1.1-spec-java', 'linux-libc-dev:amd64', 'libparams-util-perl', 'libcastor-xml-java', 'gnuplot-data', 'python-nose', 'freecontact', 'apache2.2-bin', 'lynx-cur', 'libfont-ttf-perl', 'grinder', 'libyaml-0-2:amd64', 'libtinfo-dev:amd64', 'python-gobject-2', 'infernal', 'libalgorithm-c3-perl', 'zalign', 'lksctp-tools', 'libfftw3-double3:amd64', 'libpthread-stubs0-dev:amd64', 'sgml-base', 'libgnome2-bin', 'libcommons-logging-java', 'liblexical-sealrequirehints-perl', 'libboost-chrono1.55.0:amd64', 'libisorelax-java', 'gnustep-back-common', 'libmath-round-perl', 'libasprintf-dev:amd64', 'libtcl8.6:amd64', 'libdevel-lexalias-perl', 'r-cran-dbi', 'libjpeg8:amd64', 'bsdmainutils', 'groff-base', 'glib-networking-common', 'libqt4-sql-mysql:amd64', 'libgphoto2-l10n', 'libtype-tiny-xs-perl', 'g++', 'aglfn', 'libxmuu1:amd64', 'qtcore4-l10n', 'libpolkit-gobject-1-0:amd64', 'squizz', 'libheap-perl', 'libmaloc1', 'libpango1.0-0:amd64', 'libjs-jquery-ui', 'seaview', 'plasmidomics', 'libharfbuzz0b:amd64', 'r-cran-kernsmooth', 'libbit-vector-perl', 'libxcb-present0:amd64', 'neobio', 'libpangox-1.0-0:amd64', 'openjdk-6-jre-headless:amd64', 'libdevel-globaldestruction-perl', 'glib-networking-services', 'libsub-identify-perl', 'lmodern', 'libjson-perl', 'r-doc-html', 'libpaper-utils', 'libservlet2.5-java', 'heirloom-mailx', 'libaprutil1-ldap:amd64', 'libauthen-sasl-perl', 'metastudent-data', 'ttf-dejavu-core', 'libmng1:amd64', 'libpod-coverage-perl', 'fastdnaml', 'rename', 'libsub-exporter-progressive-perl', 'libqt4-network:amd64', 'libgnustep-gui0.24', 'libgnustep-gui0.20', 'libkpathsea6', 'libindirect-perl', 'libbz2-dev:amd64', 'libjbig2dec0', 'libtiff4:amd64', 'python', 'libboost-mpi1.55.0', 'libgnumail-java', 'libpango-1.0-0:amd64', 'libtry-tiny-perl', 'libclass-xsaccessor-perl', 'python-six', 'libsoup-gnome2.4-1:amd64', 'embassy-domsearch', 'tk8.6-blt2.5', 'r-cran-labeling', 'libtablelayout-java', 'libjson-xs-perl', 'r-cran-lattice', 'muscle', 'libexporter-tiny-perl', 'laptop-detect', 'texlive-pstricks-doc', 'tcl', 'libmailtools-perl', 'swi-prolog-x', 'kissplice', 'metastudent', 'libmodule-build-perl', 'libpulse0:amd64', 'libsc7', 'fonts-lato', 'libc6-dev:amd64', 'r-cran-genabel', 'ttf-adf-accanthis', 'libgfortran-4.9-dev:amd64', 'libbareword-filehandles-perl', 'r-bioc-genomicfeatures', 'libmpdec2:amd64', 'libpng12-0:amd64', 'r-bioc-biobase', 'tcl8.6', 'python3', 'libpython-stdlib:amd64', 'libsystemd-login0:amd64', 'libedit2:amd64', 'r-cran-fastcluster', 'docutils-common', 'liblog-message-simple-perl', 'shared-mime-info', 'libsoap-lite-perl', 'ncbi-seg', 'javahelp2', 'seqtk', 'libcgmanager0:amd64', 'texlive-pictures', 'libsndfile1:amd64', 'phyutility', 'tk', 'libclass-tiny-perl', 'libxdmcp6:amd64', 'libasound2:amd64', 'probcons', 'libcommons-cli-java', 'r-cran-pkgkitten', 'libghemical-data', 'librtmp1:amd64', 'r-cran-survival', 'genometools-common', 'xml-core', 'r-cran-chron', 'libgphoto2-6:amd64', 'plink', 'libjebl2-java', 'libmagickcore5:amd64', 'libxv1:amd64', 'mira-assembler', 'gfortran-4.9', 'x11-common', 'groff', 'r-cran-checkmate', 'libxau-dev:amd64', 'libruby1.9.1', 'libcommons-io-java', 'libtask-weaken-perl', 'libglew1.7:amd64', 'wise', 'lynx', 'libio-string-perl', 'python-pmw', 'libx11-data', 'libgnujaf-java', 'libaprutil1:amd64', 'gamgi', 'libxml-xpath-perl', 'libmldbm-perl', 'bzip2', 'r-bioc-biocgenerics', 'libx11-protocol-perl', 'libtest-pod-perl', 'libxfixes3:amd64', 'libplplot11', 'dpkg-dev', 'libcommons-net1-java', 'libconvert-binary-c-perl', 'libsprng2', 'libtcmalloc-minimal4', 'libmodule-implementation-perl', 'libjaxme-java', 'libboost-thread1.49.0', 'libxml-writer-perl'] 20m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg', '--purge', 'science-biology'] 20m22.0s DUMP: dpkg: warning: ignoring request to remove science-biology which isn't installed 20m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg', '--purge', 'science-biology'] 20m22.0s INFO: Running scripts post_purge 20m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_purge_exceptions'] 20m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_purge_exceptions'] 20m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg', '--purge', '--pending'] 20m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg', '--purge', '--pending'] 20m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg', '--remove', '--pending'] 20m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg', '--remove', '--pending'] 20m22.0s INFO: Running scripts post_test 20m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_test_exceptions'] 20m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'tmp/scripts/post_test_exceptions'] 20m22.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 20m22.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 20m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg-divert', '--list'] 20m22.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 20m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'dpkg-divert', '--list'] 20m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', 'clean'] 20m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbk5I5t', 'apt-get', 'clean'] 20m23.0s DEBUG: Recording chroot state 20m24.1s INFO: Warning: Package purging left files on system: /etc/ImageMagick/ not owned /etc/apparmor.d/ owned by: mysql-server-5.5 /etc/apparmor.d/local/ not owned /etc/apparmor.d/local/usr.sbin.mysqld not owned /etc/mysql/ owned by: mysql-server-5.5, mysql-common /etc/mysql/debian.cnf not owned /etc/systemd/system/binfmt-support.service -> /dev/null not owned /etc/systemd/system/cgmanager.service -> /dev/null not owned /etc/systemd/system/cgproxy.service -> /dev/null not owned /etc/systemd/system/multi-user.target.wants/binfmt-support.service -> /lib/systemd/system/binfmt-support.service not owned /etc/xml/gnustep-base-common.xml.old not owned /root/GNUstep/ not owned /root/GNUstep/Library/ not owned /usr/lib/x86_64-linux-gnu/libfakeroot/ owned by: libfakeroot:amd64 /usr/lib/x86_64-linux-gnu/libfakeroot/libfakeroot-0.so -> libfakeroot-tcp.so not owned /usr/share/dh-python/dhpython/__pycache__/ not owned /usr/share/dh-python/dhpython/build/__pycache__/ not owned /var/lib/mysql-files/ not owned /var/lib/mysql/ not owned /var/lib/mysql/debian-5.5.flag not owned /var/lib/mysql/ib_logfile0 not owned /var/lib/mysql/ib_logfile1 not owned /var/lib/mysql/ibdata1 not owned /var/lib/mysql/mysql/ not owned /var/lib/mysql/mysql/columns_priv.MYD not owned /var/lib/mysql/mysql/columns_priv.MYI not owned /var/lib/mysql/mysql/columns_priv.frm not owned /var/lib/mysql/mysql/db.MYD not owned /var/lib/mysql/mysql/db.MYI not owned /var/lib/mysql/mysql/db.frm not owned /var/lib/mysql/mysql/event.MYD not owned /var/lib/mysql/mysql/event.MYI not owned /var/lib/mysql/mysql/event.frm not owned /var/lib/mysql/mysql/func.MYD not owned /var/lib/mysql/mysql/func.MYI not owned /var/lib/mysql/mysql/func.frm not owned /var/lib/mysql/mysql/general_log.CSM not owned /var/lib/mysql/mysql/general_log.CSV not owned /var/lib/mysql/mysql/general_log.frm not owned /var/lib/mysql/mysql/help_category.MYD not owned /var/lib/mysql/mysql/help_category.MYI not owned /var/lib/mysql/mysql/help_category.frm not owned /var/lib/mysql/mysql/help_keyword.MYD not owned /var/lib/mysql/mysql/help_keyword.MYI not owned /var/lib/mysql/mysql/help_keyword.frm not owned /var/lib/mysql/mysql/help_relation.MYD not owned /var/lib/mysql/mysql/help_relation.MYI not owned /var/lib/mysql/mysql/help_relation.frm not owned /var/lib/mysql/mysql/help_topic.MYD not owned /var/lib/mysql/mysql/help_topic.MYI not owned /var/lib/mysql/mysql/help_topic.frm not owned /var/lib/mysql/mysql/host.MYD not owned /var/lib/mysql/mysql/host.MYI not owned /var/lib/mysql/mysql/host.frm not owned /var/lib/mysql/mysql/ndb_binlog_index.MYD not owned /var/lib/mysql/mysql/ndb_binlog_index.MYI not owned /var/lib/mysql/mysql/ndb_binlog_index.frm not owned /var/lib/mysql/mysql/plugin.MYD not owned /var/lib/mysql/mysql/plugin.MYI not owned /var/lib/mysql/mysql/plugin.frm not owned /var/lib/mysql/mysql/proc.MYD not owned /var/lib/mysql/mysql/proc.MYI not owned /var/lib/mysql/mysql/proc.frm not owned /var/lib/mysql/mysql/procs_priv.MYD not owned /var/lib/mysql/mysql/procs_priv.MYI not owned /var/lib/mysql/mysql/procs_priv.frm not owned /var/lib/mysql/mysql/proxies_priv.MYD not owned /var/lib/mysql/mysql/proxies_priv.MYI not owned /var/lib/mysql/mysql/proxies_priv.frm not owned /var/lib/mysql/mysql/servers.MYD not owned /var/lib/mysql/mysql/servers.MYI not owned /var/lib/mysql/mysql/servers.frm not owned /var/lib/mysql/mysql/slow_log.CSM not owned /var/lib/mysql/mysql/slow_log.CSV not owned /var/lib/mysql/mysql/slow_log.frm not owned /var/lib/mysql/mysql/tables_priv.MYD not owned /var/lib/mysql/mysql/tables_priv.MYI not owned /var/lib/mysql/mysql/tables_priv.frm not owned /var/lib/mysql/mysql/time_zone.MYD not owned /var/lib/mysql/mysql/time_zone.MYI not owned /var/lib/mysql/mysql/time_zone.frm not owned /var/lib/mysql/mysql/time_zone_leap_second.MYD not owned /var/lib/mysql/mysql/time_zone_leap_second.MYI not owned /var/lib/mysql/mysql/time_zone_leap_second.frm not owned /var/lib/mysql/mysql/time_zone_name.MYD not owned /var/lib/mysql/mysql/time_zone_name.MYI not owned /var/lib/mysql/mysql/time_zone_name.frm not owned /var/lib/mysql/mysql/time_zone_transition.MYD not owned /var/lib/mysql/mysql/time_zone_transition.MYI not owned /var/lib/mysql/mysql/time_zone_transition.frm not owned /var/lib/mysql/mysql/time_zone_transition_type.MYD not owned /var/lib/mysql/mysql/time_zone_transition_type.MYI not owned /var/lib/mysql/mysql/time_zone_transition_type.frm not owned /var/lib/mysql/mysql/user.MYD not owned /var/lib/mysql/mysql/user.MYI not owned /var/lib/mysql/mysql/user.frm not owned /var/lib/mysql/mysql_upgrade_info not owned /var/lib/mysql/performance_schema/ not owned /var/lib/mysql/performance_schema/cond_instances.frm not owned /var/lib/mysql/performance_schema/db.opt not owned /var/lib/mysql/performance_schema/events_waits_current.frm not owned /var/lib/mysql/performance_schema/events_waits_history.frm not owned /var/lib/mysql/performance_schema/events_waits_history_long.frm not owned /var/lib/mysql/performance_schema/events_waits_summary_by_instance.frm not owned /var/lib/mysql/performance_schema/events_waits_summary_by_thread_by_event_name.frm not owned /var/lib/mysql/performance_schema/events_waits_summary_global_by_event_name.frm not owned /var/lib/mysql/performance_schema/file_instances.frm not owned /var/lib/mysql/performance_schema/file_summary_by_event_name.frm not owned /var/lib/mysql/performance_schema/file_summary_by_instance.frm not owned /var/lib/mysql/performance_schema/mutex_instances.frm not owned /var/lib/mysql/performance_schema/performance_timers.frm not owned /var/lib/mysql/performance_schema/rwlock_instances.frm not owned /var/lib/mysql/performance_schema/setup_consumers.frm not owned /var/lib/mysql/performance_schema/setup_instruments.frm not owned /var/lib/mysql/performance_schema/setup_timers.frm not owned /var/lib/mysql/performance_schema/threads.frm not owned /var/lib/systemd/deb-systemd-helper-enabled/ not owned /var/lib/systemd/deb-systemd-helper-enabled/binfmt-support.service.dsh-also not owned /var/lib/systemd/deb-systemd-helper-enabled/cgmanager.service.dsh-also not owned /var/lib/systemd/deb-systemd-helper-enabled/cgproxy.service.dsh-also not owned /var/lib/systemd/deb-systemd-helper-enabled/multi-user.target.wants/ not owned /var/lib/systemd/deb-systemd-helper-enabled/multi-user.target.wants/binfmt-support.service not owned /var/lib/systemd/deb-systemd-helper-masked/ not owned /var/lib/systemd/deb-systemd-helper-masked/binfmt-support.service not owned /var/lib/systemd/deb-systemd-helper-masked/cgmanager.service not owned /var/lib/systemd/deb-systemd-helper-masked/cgproxy.service not owned 20m24.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/proc/sys/fs/binfmt_misc'] 20m24.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/proc/sys/fs/binfmt_misc'] 20m24.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/run/shm'] 20m24.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/run/shm'] 20m24.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/console'] 20m24.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/console'] 20m24.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/ptmx'] 20m24.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/ptmx'] 20m24.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/pts'] 20m24.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/dev/pts'] 20m24.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/proc'] 20m24.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbk5I5t/proc'] 20m24.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 20m25.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbk5I5t'] 20m25.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpbk5I5t 20m25.2s INFO: PASS: Upgrading between Debian distributions. 20m25.2s INFO: PASS: All tests. 20m25.2s INFO: piuparts run ends. ret=0 End: 2017-12-26 11:23:12 UTC