Start: 2023-03-22 19:58:27 GMT [wheezy] Package: dssp Version: 2.0.4-2 Installed-Size: 558 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-iostreams1.49.0 (>= 1.49.0-1), libboost-program-options1.49.0 (>= 1.49.0-1), libboost-system1.49.0 (>= 1.49.0-1), libboost-thread1.49.0 (>= 1.49.0-1), libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6) Description: protein secondary structure assignment based on 3D structure Homepage: http://www.cmbi.ru.nl/dssp.html Description-md5: 57a41b893507973bf2abd8295df96294 Section: science Priority: optional Filename: pool/main/d/dssp/dssp_2.0.4-2_amd64.deb Size: 197576 MD5sum: f312c3494f4444795df6ec53ac92332d SHA1: 79c3177065ac05af5b120357f7d0ec6e5c40d395 SHA256: 977b93d7fef673638f9dd5f1788bc5453682651a9f4a0efe48d965c9e7e97303 [jessie] Package: dssp Source: dssp (2.2.1-2) Version: 2.2.1-2+b1 Installed-Size: 519 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-iostreams1.55.0, libboost-program-options1.55.0, libboost-system1.55.0, libboost-thread1.55.0, libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6) Description: protein secondary structure assignment based on 3D structure Homepage: http://www.cmbi.ru.nl/dssp.html Description-md5: 57a41b893507973bf2abd8295df96294 Section: science Priority: optional Filename: pool/main/d/dssp/dssp_2.2.1-2+b1_amd64.deb Size: 167082 MD5sum: 5a6e6d0f142eda06ab9d3e0d49cabdab SHA1: def6de1f5a0daeedc358491ad4fb534b2e2574e5 SHA256: 94f92cab8af3b73571e4f4e918a2cc155c07818876957b3c6cd646cb79514f96 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -S /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie/reference-chroot-metadata.dat --apt dssp=2.2.1-2+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -S /srv/piuparts.debian.org/slave/refchroot/wheezy2jessie/reference-chroot-metadata.dat --apt dssp=2.2.1-2+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpwr_vpf8b 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpwr_vpf8b 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/pts'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/pts'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/ptmx'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/ptmx'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/run/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/run/shm'] 0m1.4s DEBUG: sources.list: deb http://archive.debian.org/debian wheezy main 0m1.4s DEBUG: Created policy-rc.d and chmodded it. 0m1.4s DEBUG: Created resolv.conf. 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpwr_vpf8b/tmp/scripts/ 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpwr_vpf8b/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DUMP: Creating /etc/apt/apt.conf.d/unauthenticated-wheezy ... # The Release file is not getting updated. Acquire::Check-Valid-Until "false"; 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b', 'apt-get', 'update'] 0m1.4s DUMP: E: Method http has died unexpectedly! E: Sub-process http received a segmentation fault. 0m1.4s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b', 'apt-get', 'update'] E: Method http has died unexpectedly! E: Sub-process http received a segmentation fault. 0m1.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/run/shm'] 0m1.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/run/shm'] 0m1.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/console'] 0m1.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/console'] 0m1.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/pts'] 0m1.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/dev/pts'] 0m1.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/proc'] 0m1.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b/proc'] 0m1.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b'] 0m1.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwr_vpf8b'] 0m1.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpwr_vpf8b 0m1.8s ERROR: piuparts run ends. ret=1 End: 2023-03-22 19:58:29 GMT