Start: 2018-12-15 09:19:50 UTC [wheezy] Package: gbrowse-calign Source: gbrowse Version: 2.48~dfsg-1 Installed-Size: 122 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.14.2-7), perlapi-5.14.2, libc6 (>= 2.3), gbrowse Description: CAlign helper Homepage: http://www.gbrowse.org/ Description-md5: 7aa5fca05830bdeaf9c3c3aa626a2408 Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.48~dfsg-1_amd64.deb Size: 35584 MD5sum: 42ccf980d63bef8c4ca359154496963d SHA1: cf95c84b3fda04873c4e62b9318ac9712c3e7fad SHA256: 8fc8afcf6a12b6b7c06d1d8ab824e9182ceaf69fa63b03b6bb20244a6937b8fd [jessie] Package: gbrowse-calign Source: gbrowse (2.54+dfsg-3) Version: 2.54+dfsg-3+b1 Installed-Size: 57 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.20.0-4), perlapi-5.20.0, libc6 (>= 2.4), gbrowse Description: CAlign helper Homepage: http://www.gbrowse.org/ Description-md5: 7aa5fca05830bdeaf9c3c3aa626a2408 Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.54+dfsg-3+b1_amd64.deb Size: 34810 MD5sum: 9f5f235d6b276bcae5f39bb3c01417eb SHA1: d5a07945664593872747cce12b2c88903c753991 SHA256: 06647f021526dfcc3e7129c91bfc6a6c867fd80f7557a7aa2c91e05d9508aa7a Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B reference-chroot-metadata.dat --apt gbrowse-calign=2.54+dfsg-3+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.95~201811291053~0.94-24-g107b4297 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-jessie --skip-logrotatefiles-test --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d jessie -B reference-chroot-metadata.dat --apt gbrowse-calign=2.54+dfsg-3+b1 0m0.0s INFO: Running on: Linux piu-slave-bm-a 4.9.0-8-amd64 #1 SMP Debian 4.9.130-2 (2018-10-27) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpupEKjd 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpupEKjd 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpupEKjd', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpupEKjd', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpupEKjd/proc'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpupEKjd/proc'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/pts'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/pts'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/ptmx'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpupEKjd/run/shm'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpupEKjd/run/shm'] 0m2.0s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ wheezy main 0m2.0s DEBUG: Created policy-rc.d and chmodded it. 0m2.0s DEBUG: Created resolv.conf. 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpupEKjd/tmp/scripts/ 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts-jessie to /srv/piuparts.debian.org/tmp/tmpupEKjd/tmp/scripts/ 0m2.0s INFO: Running scripts post_chroot_unpack 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', 'update'] 0m5.3s DUMP: Hit http://mirror.bm.debian.org wheezy Release.gpg Hit http://mirror.bm.debian.org wheezy Release Hit http://mirror.bm.debian.org wheezy/main amd64 Packages Hit http://mirror.bm.debian.org wheezy/main Translation-en Reading package lists... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', 'update'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.4s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.4s INFO: Running scripts post_setup 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_dummy_users'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_dummy_users'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_experimental'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_experimental'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_forbid_home'] 0m8.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_forbid_home'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m9.6s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... The following NEW packages will be installed: ucf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 70.8 kB of archives. After this operation, 236 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.8 kB in 0s (3001 kB/s) Selecting previously unselected package ucf. (Reading database ... 6639 files and directories currently installed.) Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up ucf (3.0025+nmu3) ... 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_jessie-fake-essential'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_minimize'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_minimize'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_zz_backports'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_setup_zz_backports'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.7s DUMP: install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.7s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m10.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 0m12.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 0m12.0s INFO: Running scripts is_testable 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/is_testable_uninstallable'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/is_testable_uninstallable'] 0m12.0s INFO: Running scripts pre_test 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_test_exceptions'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_test_exceptions'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_test_root_password'] 0m12.0s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_test_root_password'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 0m12.1s DUMP: Package: gbrowse-calign Source: gbrowse Version: 2.48~dfsg-1 Installed-Size: 122 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.14.2-7), perlapi-5.14.2, libc6 (>= 2.3), gbrowse Description-en: CAlign helper This package provides the CAlign helper for use with Realign. It speeds up Smith-Waterman alignment. Homepage: http://www.gbrowse.org/ Description-md5: 7aa5fca05830bdeaf9c3c3aa626a2408 Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.48~dfsg-1_amd64.deb Size: 35584 MD5sum: 42ccf980d63bef8c4ca359154496963d SHA1: cf95c84b3fda04873c4e62b9318ac9712c3e7fad SHA256: 8fc8afcf6a12b6b7c06d1d8ab824e9182ceaf69fa63b03b6bb20244a6937b8fd 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 0m12.1s INFO: apt-cache knows about the following packages: gbrowse-calign 0m12.1s INFO: Running scripts pre_install 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_database-server'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_database-server'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_exceptions'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_exceptions'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_extras'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_extras'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'policy'] 0m12.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ wheezy/main Translation-en 500 http://mirror.bm.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'policy'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'policy', 'gbrowse-calign'] 0m12.3s DUMP: gbrowse-calign: Installed: (none) Candidate: 2.48~dfsg-1 Version table: 2.48~dfsg-1 0 500 http://mirror.bm.debian.org/debian/ wheezy/main amd64 Packages 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'policy', 'gbrowse-calign'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', '-y', 'install', 'gbrowse-calign'] 0m27.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bioperl ca-certificates fontconfig-config gbrowse libbio-graphics-perl libbio-perl-perl libcgi-session-perl libclass-isa-perl libdata-stag-perl libdbd-sqlite3-perl libdbi-perl libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgd-gd2-perl libgd2-xpm libgdbm3 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-socket-ssl-perl libio-string-perl libjpeg8 libjs-prototype libjs-scriptaculous libjson-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libpng12-0 libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libswitch-perl libterm-readkey-perl libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 netbase openssl perl perl-modules sqlite3 ttf-dejavu-core Suggested packages: groff-base gbrowse-data libfile-nfslock-perl libmath-random-perl libxml-sax-expatxs-perl libgd-tools libdata-dump-perl libjson-pp-perl libcrypt-ssleay-perl libmime-base64-perl libauthen-ntlm-perl libterm-readline-gnu-perl libterm-readline-perl-perl make libpod-plainer-perl sqlite3-doc Recommended packages: bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libapache-dbi-perl libxml-simple-perl libyaml-perl libace-perl liblist-moreutils-perl libxml-twig-perl libset-scalar-perl libbio-scf-perl libfile-spec-perl libgd-svg-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libgraph-perl libgraphviz-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libstorable-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk libxml-libxslt-perl libmldbm-perl libhtml-format-perl libio-socket-ip-perl libio-socket-inet6-perl javascript-common libjson-xs-perl libhtml-form-perl libmailtools-perl ifupdown The following NEW packages will be installed: bioperl ca-certificates fontconfig-config gbrowse gbrowse-calign libbio-graphics-perl libbio-perl-perl libcgi-session-perl libclass-isa-perl libdata-stag-perl libdbd-sqlite3-perl libdbi-perl libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgd-gd2-perl libgd2-xpm libgdbm3 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-socket-ssl-perl libio-string-perl libjpeg8 libjs-prototype libjs-scriptaculous libjson-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libpng12-0 libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libswitch-perl libterm-readkey-perl libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 netbase openssl perl perl-modules sqlite3 ttf-dejavu-core 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 28.1 MB of archives. After this operation, 82.7 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ wheezy/main libgdbm3 amd64 1.8.3-11 [46.9 kB] Get:2 http://mirror.bm.debian.org/debian/ wheezy/main libssl1.0.0 amd64 1.0.1e-2+deb7u20 [1263 kB] Get:3 http://mirror.bm.debian.org/debian/ wheezy/main libsqlite3-0 amd64 3.7.13-1+deb7u2 [454 kB] Get:4 http://mirror.bm.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:5 http://mirror.bm.debian.org/debian/ wheezy/main libfreetype6 amd64 2.4.9-1.1+deb7u3 [452 kB] Get:6 http://mirror.bm.debian.org/debian/ wheezy/main ttf-dejavu-core all 2.33-3 [1021 kB] Get:7 http://mirror.bm.debian.org/debian/ wheezy/main fontconfig-config all 2.9.0-7.1 [233 kB] Get:8 http://mirror.bm.debian.org/debian/ wheezy/main libfontconfig1 amd64 2.9.0-7.1 [300 kB] Get:9 http://mirror.bm.debian.org/debian/ wheezy/main libjpeg8 amd64 8d-1+deb7u1 [138 kB] Get:10 http://mirror.bm.debian.org/debian/ wheezy/main libpng12-0 amd64 1.2.49-1+deb7u2 [191 kB] Get:11 http://mirror.bm.debian.org/debian/ wheezy/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:12 http://mirror.bm.debian.org/debian/ wheezy/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:13 http://mirror.bm.debian.org/debian/ wheezy/main libxcb1 amd64 1.8.1-2+deb7u1 [50.2 kB] Get:14 http://mirror.bm.debian.org/debian/ wheezy/main libx11-data all 2:1.5.0-1+deb7u2 [194 kB] Get:15 http://mirror.bm.debian.org/debian/ wheezy/main libx11-6 amd64 2:1.5.0-1+deb7u2 [901 kB] Get:16 http://mirror.bm.debian.org/debian/ wheezy/main libxpm4 amd64 1:3.5.10-1 [49.4 kB] Get:17 http://mirror.bm.debian.org/debian/ wheezy/main libgd2-xpm amd64 2.0.36~rc1~dfsg-6.1+deb7u2 [234 kB] Get:18 http://mirror.bm.debian.org/debian/ wheezy/main netbase all 5.0 [20.1 kB] Get:19 http://mirror.bm.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:20 http://mirror.bm.debian.org/debian/ wheezy/main perl-modules all 5.14.2-21+deb7u3 [3444 kB] Get:21 http://mirror.bm.debian.org/debian/ wheezy/main perl amd64 5.14.2-21+deb7u3 [4429 kB] Get:22 http://mirror.bm.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:23 http://mirror.bm.debian.org/debian/ wheezy/main libio-string-perl all 1.08-2 [12.0 kB] Get:24 http://mirror.bm.debian.org/debian/ wheezy/main libdata-stag-perl all 0.11-2 [509 kB] Get:25 http://mirror.bm.debian.org/debian/ wheezy/main libbio-perl-perl all 1.6.901-3 [6143 kB] Get:26 http://mirror.bm.debian.org/debian/ wheezy/main bioperl all 1.6.901-3 [467 kB] Get:27 http://mirror.bm.debian.org/debian/ wheezy/main openssl amd64 1.0.1e-2+deb7u20 [702 kB] Get:28 http://mirror.bm.debian.org/debian/ wheezy/main ca-certificates all 20130119+deb7u1 [210 kB] Get:29 http://mirror.bm.debian.org/debian/ wheezy/main libgd-gd2-perl amd64 1:2.46-3+b1 [200 kB] Get:30 http://mirror.bm.debian.org/debian/ wheezy/main libbio-graphics-perl all 2.26-1 [669 kB] Get:31 http://mirror.bm.debian.org/debian/ wheezy/main libcgi-session-perl all 4.46-1 [123 kB] Get:32 http://mirror.bm.debian.org/debian/ wheezy/main libjson-perl all 2.53-1 [99.9 kB] Get:33 http://mirror.bm.debian.org/debian/ wheezy/main libstatistics-descriptive-perl all 3.0603-1 [42.5 kB] Get:34 http://mirror.bm.debian.org/debian/ wheezy/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:35 http://mirror.bm.debian.org/debian/ wheezy/main libtimedate-perl all 1.2000-1 [41.2 kB] Get:36 http://mirror.bm.debian.org/debian/ wheezy/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:37 http://mirror.bm.debian.org/debian/ wheezy/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:38 http://mirror.bm.debian.org/debian/ wheezy/main liburi-perl all 1.60-1 [100 kB] Get:39 http://mirror.bm.debian.org/debian/ wheezy/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:40 http://mirror.bm.debian.org/debian/ wheezy/main libhtml-parser-perl amd64 3.69-2 [114 kB] Get:41 http://mirror.bm.debian.org/debian/ wheezy/main libhtml-tree-perl all 5.02-1 [225 kB] Get:42 http://mirror.bm.debian.org/debian/ wheezy/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:43 http://mirror.bm.debian.org/debian/ wheezy/main libhttp-message-perl all 6.03-1 [78.5 kB] Get:44 http://mirror.bm.debian.org/debian/ wheezy/main libhttp-cookies-perl all 6.00-2 [23.5 kB] Get:45 http://mirror.bm.debian.org/debian/ wheezy/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:46 http://mirror.bm.debian.org/debian/ wheezy/main libnet-ssleay-perl amd64 1.48-1+b1 [335 kB] Get:47 http://mirror.bm.debian.org/debian/ wheezy/main libio-socket-ssl-perl all 1.76-2 [68.0 kB] Get:48 http://mirror.bm.debian.org/debian/ wheezy/main libnet-http-perl all 6.03-2 [24.3 kB] Get:49 http://mirror.bm.debian.org/debian/ wheezy/main liblwp-protocol-https-perl all 6.03-1 [7580 B] Get:50 http://mirror.bm.debian.org/debian/ wheezy/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:51 http://mirror.bm.debian.org/debian/ wheezy/main libwww-perl all 6.04-1 [203 kB] Get:52 http://mirror.bm.debian.org/debian/ wheezy/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:53 http://mirror.bm.debian.org/debian/ wheezy/main libterm-readkey-perl amd64 2.30-4+b2 [32.2 kB] Get:54 http://mirror.bm.debian.org/debian/ wheezy/main sqlite3 amd64 3.7.13-1+deb7u2 [119 kB] Get:55 http://mirror.bm.debian.org/debian/ wheezy/main libdbi-perl amd64 1.622-1+deb7u1 [892 kB] Get:56 http://mirror.bm.debian.org/debian/ wheezy/main libdbd-sqlite3-perl amd64 1.37-1 [113 kB] Get:57 http://mirror.bm.debian.org/debian/ wheezy/main libjs-prototype all 1.7.0-2 [40.9 kB] Get:58 http://mirror.bm.debian.org/debian/ wheezy/main libjs-scriptaculous all 1.9.0-2 [129 kB] Get:59 http://mirror.bm.debian.org/debian/ wheezy/main gbrowse all 2.48~dfsg-1 [2634 kB] Get:60 http://mirror.bm.debian.org/debian/ wheezy/main gbrowse-calign amd64 2.48~dfsg-1 [35.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.1 MB in 2s (11.9 MB/s) Selecting previously unselected package libgdbm3:amd64. (Reading database ... 6657 files and directories currently installed.) Unpacking libgdbm3:amd64 (from .../libgdbm3_1.8.3-11_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package libsqlite3-0:amd64. Unpacking libsqlite3-0:amd64 (from .../libsqlite3-0_3.7.13-1+deb7u2_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libfreetype6:amd64. Unpacking libfreetype6:amd64 (from .../libfreetype6_2.4.9-1.1+deb7u3_amd64.deb) ... Selecting previously unselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-3_all.deb) ... Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ... Selecting previously unselected package libfontconfig1:amd64. Unpacking libfontconfig1:amd64 (from .../libfontconfig1_2.9.0-7.1_amd64.deb) ... Selecting previously unselected package libjpeg8:amd64. Unpacking libjpeg8:amd64 (from .../libjpeg8_8d-1+deb7u1_amd64.deb) ... Selecting previously unselected package libpng12-0:amd64. Unpacking libpng12-0:amd64 (from .../libpng12-0_1.2.49-1+deb7u2_amd64.deb) ... Selecting previously unselected package libxau6:amd64. Unpacking libxau6:amd64 (from .../libxau6_1%3a1.0.7-1_amd64.deb) ... Selecting previously unselected package libxdmcp6:amd64. Unpacking libxdmcp6:amd64 (from .../libxdmcp6_1%3a1.1.1-1_amd64.deb) ... Selecting previously unselected package libxcb1:amd64. Unpacking libxcb1:amd64 (from .../libxcb1_1.8.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1+deb7u2_all.deb) ... Selecting previously unselected package libx11-6:amd64. Unpacking libx11-6:amd64 (from .../libx11-6_2%3a1.5.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libxpm4:amd64. Unpacking libxpm4:amd64 (from .../libxpm4_1%3a3.5.10-1_amd64.deb) ... Selecting previously unselected package libgd2-xpm:amd64. Unpacking libgd2-xpm:amd64 (from .../libgd2-xpm_2.0.36~rc1~dfsg-6.1+deb7u2_amd64.deb) ... Selecting previously unselected package netbase. Unpacking netbase (from .../archives/netbase_5.0_all.deb) ... Selecting previously unselected package libclass-isa-perl. Unpacking libclass-isa-perl (from .../libclass-isa-perl_0.36-3_all.deb) ... Selecting previously unselected package perl-modules. Unpacking perl-modules (from .../perl-modules_5.14.2-21+deb7u3_all.deb) ... Selecting previously unselected package perl. Unpacking perl (from .../perl_5.14.2-21+deb7u3_amd64.deb) ... Selecting previously unselected package libswitch-perl. Unpacking libswitch-perl (from .../libswitch-perl_2.16-2_all.deb) ... Selecting previously unselected package libio-string-perl. Unpacking libio-string-perl (from .../libio-string-perl_1.08-2_all.deb) ... Selecting previously unselected package libdata-stag-perl. Unpacking libdata-stag-perl (from .../libdata-stag-perl_0.11-2_all.deb) ... Selecting previously unselected package libbio-perl-perl. Unpacking libbio-perl-perl (from .../libbio-perl-perl_1.6.901-3_all.deb) ... Selecting previously unselected package bioperl. Unpacking bioperl (from .../bioperl_1.6.901-3_all.deb) ... Selecting previously unselected package openssl. Unpacking openssl (from .../openssl_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package ca-certificates. Unpacking ca-certificates (from .../ca-certificates_20130119+deb7u1_all.deb) ... Selecting previously unselected package libgd-gd2-perl. Unpacking libgd-gd2-perl (from .../libgd-gd2-perl_1%3a2.46-3+b1_amd64.deb) ... Selecting previously unselected package libbio-graphics-perl. Unpacking libbio-graphics-perl (from .../libbio-graphics-perl_2.26-1_all.deb) ... Selecting previously unselected package libcgi-session-perl. Unpacking libcgi-session-perl (from .../libcgi-session-perl_4.46-1_all.deb) ... Selecting previously unselected package libjson-perl. Unpacking libjson-perl (from .../libjson-perl_2.53-1_all.deb) ... Selecting previously unselected package libstatistics-descriptive-perl. Unpacking libstatistics-descriptive-perl (from .../libstatistics-descriptive-perl_3.0603-1_all.deb) ... Selecting previously unselected package libencode-locale-perl. Unpacking libencode-locale-perl (from .../libencode-locale-perl_1.03-1_all.deb) ... Selecting previously unselected package libtimedate-perl. Unpacking libtimedate-perl (from .../libtimedate-perl_1.2000-1_all.deb) ... Selecting previously unselected package libhttp-date-perl. Unpacking libhttp-date-perl (from .../libhttp-date-perl_6.02-1_all.deb) ... Selecting previously unselected package libfile-listing-perl. Unpacking libfile-listing-perl (from .../libfile-listing-perl_6.04-1_all.deb) ... Selecting previously unselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.60-1_all.deb) ... Selecting previously unselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously unselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.69-2_amd64.deb) ... Selecting previously unselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_5.02-1_all.deb) ... Selecting previously unselected package liblwp-mediatypes-perl. Unpacking liblwp-mediatypes-perl (from .../liblwp-mediatypes-perl_6.02-1_all.deb) ... Selecting previously unselected package libhttp-message-perl. Unpacking libhttp-message-perl (from .../libhttp-message-perl_6.03-1_all.deb) ... Selecting previously unselected package libhttp-cookies-perl. 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Selecting previously unselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_6.04-1_all.deb) ... Selecting previously unselected package libhttp-daemon-perl. Unpacking libhttp-daemon-perl (from .../libhttp-daemon-perl_6.01-1_all.deb) ... Selecting previously unselected package libterm-readkey-perl. Unpacking libterm-readkey-perl (from .../libterm-readkey-perl_2.30-4+b2_amd64.deb) ... Selecting previously unselected package sqlite3. Unpacking sqlite3 (from .../sqlite3_3.7.13-1+deb7u2_amd64.deb) ... Selecting previously unselected package libdbi-perl. Unpacking libdbi-perl (from .../libdbi-perl_1.622-1+deb7u1_amd64.deb) ... Selecting previously unselected package libdbd-sqlite3-perl. Unpacking libdbd-sqlite3-perl (from .../libdbd-sqlite3-perl_1.37-1_amd64.deb) ... Selecting previously unselected package libjs-prototype. Unpacking libjs-prototype (from .../libjs-prototype_1.7.0-2_all.deb) ... Selecting previously unselected package libjs-scriptaculous. Unpacking libjs-scriptaculous (from .../libjs-scriptaculous_1.9.0-2_all.deb) ... Selecting previously unselected package gbrowse. Unpacking gbrowse (from .../gbrowse_2.48~dfsg-1_all.deb) ... Selecting previously unselected package gbrowse-calign. Unpacking gbrowse-calign (from .../gbrowse-calign_2.48~dfsg-1_amd64.deb) ... Setting up libgdbm3:amd64 (1.8.3-11) ... Setting up libssl1.0.0:amd64 (1.0.1e-2+deb7u20) ... Setting up libsqlite3-0:amd64 (3.7.13-1+deb7u2) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u2) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u3) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1) ... Setting up libjpeg8:amd64 (8d-1+deb7u1) ... Setting up libpng12-0:amd64 (1.2.49-1+deb7u2) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u2) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u2) ... Setting up libxpm4:amd64 (1:3.5.10-1) ... Setting up libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Setting up netbase (5.0) ... Setting up libclass-isa-perl (0.36-3) ... Setting up openssl (1.0.1e-2+deb7u20) ... Setting up ca-certificates (20130119+deb7u1) ... Setting up sqlite3 (3.7.13-1+deb7u2) ... Setting up libjs-prototype (1.7.0-2) ... Setting up libjs-scriptaculous (1.9.0-2) ... Setting up libswitch-perl (2.16-2) ... Setting up perl-modules (5.14.2-21+deb7u3) ... Setting up perl (5.14.2-21+deb7u3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libio-string-perl (1.08-2) ... Setting up libdata-stag-perl (0.11-2) ... Setting up libbio-perl-perl (1.6.901-3) ... Setting up bioperl (1.6.901-3) ... Setting up libgd-gd2-perl (1:2.46-3+b1) ... Setting up libbio-graphics-perl (2.26-1) ... Setting up libcgi-session-perl (4.46-1) ... Setting up libjson-perl (2.53-1) ... Setting up libstatistics-descriptive-perl (3.0603-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libtimedate-perl (1.2000-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up liburi-perl (1.60-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-2) ... Setting up libhtml-tree-perl (5.02-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.03-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.48-1+b1) ... Setting up libio-socket-ssl-perl (1.76-2) ... Setting up libnet-http-perl (6.03-2) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libwww-perl (6.04-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libterm-readkey-perl (2.30-4+b2) ... Setting up libdbi-perl (1.622-1+deb7u1) ... Setting up libdbd-sqlite3-perl (1.37-1) ... Setting up gbrowse (2.48~dfsg-1) ... Setting up gbrowse-calign (2.48~dfsg-1) ... Setting up liblwp-protocol-https-perl (6.03-1) ... Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 171 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', '-y', 'install', 'gbrowse-calign'] 0m27.9s INFO: Running scripts post_install 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_install_exceptions'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_install_exceptions'] 0m27.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 0m30.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 0m30.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpupEKjd to jessie 0m30.0s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ jessie main 0m30.0s INFO: Running scripts pre_distupgrade 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_distupgrade_exceptions'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_distupgrade_exceptions'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', 'update'] 0m35.2s DUMP: Get:1 http://mirror.bm.debian.org jessie Release.gpg [2420 B] Get:2 http://mirror.bm.debian.org jessie Release [148 kB] Get:3 http://mirror.bm.debian.org jessie/main amd64 Packages [6818 kB] Get:4 http://mirror.bm.debian.org jessie/main Translation-en [4581 kB] Fetched 11.5 MB in 3s (3732 kB/s) Reading package lists... 0m35.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', 'update'] 0m35.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', '-yf', 'dist-upgrade'] 1m42.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gcc-4.7-base libgd-gd2-perl The following NEW packages will be installed: acl adduser apache2 apache2-bin apache2-data apache2-utils dmsetup fonts-dejavu-core gcc-4.9-base init libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libaudit-common libaudit1 libcap2 libcap2-bin libcommon-sense-perl libcryptsetup4 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libffi6 libgcrypt20 libgd-perl libgd3 libgmp10 libgnutls-deb0-28 libgpg-error0 libhogweed2 libio-html-perl libjbig0 libjpeg62-turbo libkmod2 libldap-2.4-2 liblist-moreutils-perl liblua5.1-0 libncursesw5 libnettle4 libp11-kit0 libpcre3 libprocps3 libsasl2-2 libsasl2-modules-db libsmartcols1 libstring-approx-perl libsystemd0 libtasn1-6 libtiff5 libudev1 libvm-ec2-perl libvpx1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 mime-support procps startpar systemd systemd-sysv udev The following packages will be upgraded: apt base-files base-passwd bash bioperl bsdutils ca-certificates coreutils dash debconf debconf-i18n debian-archive-keyring debianutils diffutils dpkg e2fslibs e2fsprogs findutils fontconfig-config gbrowse gbrowse-calign gnupg gpgv grep gzip hostname initscripts libacl1 libapt-pkg4.12 libattr1 libbio-graphics-perl libbio-perl-perl libblkid1 libbz2-1.0 libc-bin libc6 libcgi-session-perl libclass-isa-perl libcomerr2 libdata-stag-perl libdbd-sqlite3-perl libdbi-perl libexpat1 libfontconfig1 libfreetype6 libgcc1 libgdbm3 libhtml-parser-perl libhtml-tree-perl libhttp-cookies-perl libhttp-message-perl libio-socket-ssl-perl libio-string-perl libjs-prototype libjson-perl liblocale-gettext-perl liblwp-protocol-https-perl liblzma5 libmount1 libncurses5 libnet-http-perl libnet-ssleay-perl libpam-modules libpam-modules-bin libpam-runtime libpam0g libpng12-0 libreadline6 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsqlite3-0 libss2 libssl1.0.0 libstatistics-descriptive-perl libstdc++6 libswitch-perl libterm-readkey-perl libtext-charwidth-perl libtext-iconv-perl libtimedate-perl libtinfo5 liburi-perl libusb-0.1-4 libustr-1.0-1 libuuid1 libwww-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 login lsb-base mount multiarch-support ncurses-base ncurses-bin netbase openssl passwd perl perl-base perl-modules readline-common sed sensible-utils sqlite3 sysv-rc sysvinit sysvinit-utils tar ttf-dejavu-core tzdata ucf util-linux xz-utils zlib1g 121 upgraded, 68 newly installed, 2 to remove and 0 not upgraded. Need to get 65.8 MB of archives. After this operation, 53.0 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ jessie/main libc6 amd64 2.19-18+deb8u10 [4665 kB] Get:2 http://mirror.bm.debian.org/debian/ jessie/main libc-bin amd64 2.19-18+deb8u10 [1281 kB] Get:3 http://mirror.bm.debian.org/debian/ jessie/main gcc-4.9-base amd64 4.9.2-10+deb8u1 [160 kB] Get:4 http://mirror.bm.debian.org/debian/ jessie/main libstdc++6 amd64 4.9.2-10+deb8u1 [273 kB] Get:5 http://mirror.bm.debian.org/debian/ jessie/main libgcc1 amd64 1:4.9.2-10+deb8u1 [39.5 kB] Get:6 http://mirror.bm.debian.org/debian/ jessie/main libpcre3 amd64 2:8.35-3.3+deb8u4 [322 kB] Get:7 http://mirror.bm.debian.org/debian/ jessie/main libselinux1 amd64 2.3-2 [89.8 kB] Get:8 http://mirror.bm.debian.org/debian/ jessie/main dpkg amd64 1.17.27 [2994 kB] Get:9 http://mirror.bm.debian.org/debian/ jessie/main libtext-charwidth-perl amd64 0.04-7+b3 [10.7 kB] Get:10 http://mirror.bm.debian.org/debian/ jessie/main gbrowse-calign amd64 2.54+dfsg-3+b1 [34.8 kB] Get:11 http://mirror.bm.debian.org/debian/ jessie/main perl amd64 5.20.2-3+deb8u11 [2642 kB] Get:12 http://mirror.bm.debian.org/debian/ jessie/main libhtml-parser-perl amd64 3.71-1+b3 [109 kB] Get:13 http://mirror.bm.debian.org/debian/ jessie/main libdbd-sqlite3-perl amd64 1.44-1 [156 kB] Get:14 http://mirror.bm.debian.org/debian/ jessie/main perl-base amd64 5.20.2-3+deb8u11 [1230 kB] Get:15 http://mirror.bm.debian.org/debian/ jessie/main liblocale-gettext-perl amd64 1.05-8+b1 [19.0 kB] Get:16 http://mirror.bm.debian.org/debian/ jessie/main ttf-dejavu-core all 2.34-1 [30.7 kB] Get:17 http://mirror.bm.debian.org/debian/ jessie/main fonts-dejavu-core all 2.34-1 [1047 kB] Get:18 http://mirror.bm.debian.org/debian/ jessie/main fontconfig-config all 2.11.0-6.3+deb8u1 [274 kB] Get:19 http://mirror.bm.debian.org/debian/ jessie/main libfontconfig1 amd64 2.11.0-6.3+deb8u1 [329 kB] Get:20 http://mirror.bm.debian.org/debian/ jessie/main libjpeg62-turbo amd64 1:1.3.1-12 [116 kB] Get:21 http://mirror.bm.debian.org/debian/ jessie/main libjbig0 amd64 2.1-3.1 [30.7 kB] Get:22 http://mirror.bm.debian.org/debian/ jessie/main libtiff5 amd64 4.0.3-12.3+deb8u5 [221 kB] Get:23 http://mirror.bm.debian.org/debian/ jessie/main libvpx1 amd64 1.3.0-3+deb8u1 [600 kB] Get:24 http://mirror.bm.debian.org/debian/ jessie/main libgd3 amd64 2.1.0-5+deb8u11 [148 kB] Get:25 http://mirror.bm.debian.org/debian/ jessie/main libtinfo5 amd64 5.9+20140913-1+deb8u3 [282 kB] Get:26 http://mirror.bm.debian.org/debian/ jessie/main libncurses5 amd64 5.9+20140913-1+deb8u3 [96.6 kB] Get:27 http://mirror.bm.debian.org/debian/ jessie/main libncursesw5 amd64 5.9+20140913-1+deb8u3 [123 kB] Get:28 http://mirror.bm.debian.org/debian/ jessie/main libprocps3 amd64 2:3.3.9-9+deb8u1 [56.7 kB] Get:29 http://mirror.bm.debian.org/debian/ jessie/main procps amd64 2:3.3.9-9+deb8u1 [236 kB] Get:30 http://mirror.bm.debian.org/debian/ jessie/main mime-support all 3.58 [36.0 kB] Get:31 http://mirror.bm.debian.org/debian/ jessie/main libapr1 amd64 1.5.1-3 [95.3 kB] Get:32 http://mirror.bm.debian.org/debian/ jessie/main libdb5.3 amd64 5.3.28-9+deb8u1 [680 kB] Get:33 http://mirror.bm.debian.org/debian/ jessie/main libaprutil1 amd64 1.5.4-1 [86.2 kB] Get:34 http://mirror.bm.debian.org/debian/ jessie/main libaprutil1-dbd-sqlite3 amd64 1.5.4-1 [19.1 kB] Get:35 http://mirror.bm.debian.org/debian/ jessie/main libgmp10 amd64 2:6.0.0+dfsg-6 [253 kB] Get:36 http://mirror.bm.debian.org/debian/ jessie/main libnettle4 amd64 2.7.1-5+deb8u2 [176 kB] Get:37 http://mirror.bm.debian.org/debian/ jessie/main libhogweed2 amd64 2.7.1-5+deb8u2 [125 kB] Get:38 http://mirror.bm.debian.org/debian/ jessie/main libffi6 amd64 3.1-2+deb8u1 [20.2 kB] Get:39 http://mirror.bm.debian.org/debian/ jessie/main libp11-kit0 amd64 0.20.7-1 [81.2 kB] Get:40 http://mirror.bm.debian.org/debian/ jessie/main libtasn1-6 amd64 4.2-3+deb8u3 [49.2 kB] Get:41 http://mirror.bm.debian.org/debian/ jessie/main libgnutls-deb0-28 amd64 3.3.8-6+deb8u7 [696 kB] Get:42 http://mirror.bm.debian.org/debian/ jessie/main libsasl2-modules-db amd64 2.1.26.dfsg1-13+deb8u1 [67.1 kB] Get:43 http://mirror.bm.debian.org/debian/ jessie/main libsasl2-2 amd64 2.1.26.dfsg1-13+deb8u1 [105 kB] Get:44 http://mirror.bm.debian.org/debian/ jessie/main libldap-2.4-2 amd64 2.4.40+dfsg-1+deb8u4 [218 kB] Get:45 http://mirror.bm.debian.org/debian/ jessie/main libaprutil1-ldap amd64 1.5.4-1 [17.2 kB] Get:46 http://mirror.bm.debian.org/debian/ jessie/main liblua5.1-0 amd64 5.1.5-7.1 [108 kB] Get:47 http://mirror.bm.debian.org/debian/ jessie/main zlib1g amd64 1:1.2.8.dfsg-2+b1 [88.8 kB] Get:48 http://mirror.bm.debian.org/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-5+deb8u6 [802 kB] Get:49 http://mirror.bm.debian.org/debian/ jessie/main apache2-bin amd64 2.4.10-10+deb8u12 [1042 kB] Get:50 http://mirror.bm.debian.org/debian/ jessie/main apache2-utils amd64 2.4.10-10+deb8u12 [196 kB] Get:51 http://mirror.bm.debian.org/debian/ jessie/main apache2-data all 2.4.10-10+deb8u12 [163 kB] Get:52 http://mirror.bm.debian.org/debian/ jessie/main apache2 amd64 2.4.10-10+deb8u12 [208 kB] Get:53 http://mirror.bm.debian.org/debian/ jessie/main libbio-graphics-perl all 2.39-2 [606 kB] Get:54 http://mirror.bm.debian.org/debian/ jessie/main libanyevent-perl amd64 7.070-3 [404 kB] Get:55 http://mirror.bm.debian.org/debian/ jessie/main libanyevent-cachedns-perl all 0.08-1 [7040 B] Get:56 http://mirror.bm.debian.org/debian/ jessie/main libcommon-sense-perl amd64 3.73-2+b3 [23.7 kB] Get:57 http://mirror.bm.debian.org/debian/ jessie/main libanyevent-http-perl all 2.21-1 [34.5 kB] Get:58 http://mirror.bm.debian.org/debian/ jessie/main libstring-approx-perl amd64 3.27-1+b2 [40.8 kB] Get:59 http://mirror.bm.debian.org/debian/ jessie/main libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:60 http://mirror.bm.debian.org/debian/ jessie/main libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:61 http://mirror.bm.debian.org/debian/ jessie/main libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:62 http://mirror.bm.debian.org/debian/ jessie/main libxml-libxml-perl amd64 2.0116+dfsg-1+deb8u2 [365 kB] Get:63 http://mirror.bm.debian.org/debian/ jessie/main libxml-simple-perl all 2.20-1 [74.7 kB] Get:64 http://mirror.bm.debian.org/debian/ jessie/main libvm-ec2-perl all 1.28-1 [768 kB] Get:65 http://mirror.bm.debian.org/debian/ jessie/main gbrowse all 2.54+dfsg-3 [2316 kB] Get:66 http://mirror.bm.debian.org/debian/ jessie/main libgd-perl amd64 2.53-1+b1 [180 kB] Get:67 http://mirror.bm.debian.org/debian/ jessie/main libnet-ssleay-perl amd64 1.65-1+deb8u1 [277 kB] Get:68 http://mirror.bm.debian.org/debian/ jessie/main libterm-readkey-perl amd64 2.32-1+b1 [28.0 kB] Get:69 http://mirror.bm.debian.org/debian/ jessie/main libtext-iconv-perl amd64 1.7-5+b2 [16.2 kB] Get:70 http://mirror.bm.debian.org/debian/ jessie/main libdbi-perl amd64 1.631-3+b1 [816 kB] Get:71 http://mirror.bm.debian.org/debian/ jessie/main perl-modules all 5.20.2-3+deb8u11 [2547 kB] Get:72 http://mirror.bm.debian.org/debian/ jessie/main liburi-perl all 1.64-1 [95.5 kB] Get:73 http://mirror.bm.debian.org/debian/ jessie/main readline-common all 6.3-8 [57.7 kB] Get:74 http://mirror.bm.debian.org/debian/ jessie/main libreadline6 amd64 6.3-8+b3 [143 kB] Get:75 http://mirror.bm.debian.org/debian/ jessie/main sqlite3 amd64 3.8.7.1-1+deb8u2 [101 kB] Get:76 http://mirror.bm.debian.org/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1+deb8u2 [438 kB] Get:77 http://mirror.bm.debian.org/debian/ jessie/main debconf all 1.5.56+deb8u1 [167 kB] Get:78 http://mirror.bm.debian.org/debian/ jessie/main libssl1.0.0 amd64 1.0.1t-1+deb8u8 [1044 kB] Get:79 http://mirror.bm.debian.org/debian/ jessie/main libbz2-1.0 amd64 1.0.6-7+b3 [43.5 kB] Get:80 http://mirror.bm.debian.org/debian/ jessie/main libgdbm3 amd64 1.8.3-13.1 [30.0 kB] Get:81 http://mirror.bm.debian.org/debian/ jessie/main lsb-base all 4.1+Debian13+nmu1 [26.7 kB] Get:82 http://mirror.bm.debian.org/debian/ jessie/main startpar amd64 0.59-3 [21.8 kB] Get:83 http://mirror.bm.debian.org/debian/ jessie/main sysvinit-utils amd64 2.88dsf-59 [84.4 kB] Get:84 http://mirror.bm.debian.org/debian/ jessie/main base-files amd64 8+deb8u11 [78.2 kB] Get:85 http://mirror.bm.debian.org/debian/ jessie/main sysv-rc all 2.88dsf-59 [82.8 kB] Get:86 http://mirror.bm.debian.org/debian/ jessie/main libaudit-common all 1:2.4-1 [13.5 kB] Get:87 http://mirror.bm.debian.org/debian/ jessie/main libaudit1 amd64 1:2.4-1+b1 [44.7 kB] Get:88 http://mirror.bm.debian.org/debian/ jessie/main libpam0g amd64 1.1.8-3.1+deb8u2+b1 [126 kB] Get:89 http://mirror.bm.debian.org/debian/ jessie/main libsemanage-common all 2.3-1 [24.6 kB] Get:90 http://mirror.bm.debian.org/debian/ jessie/main libsemanage1 amd64 2.3-1+b1 [90.2 kB] Get:91 http://mirror.bm.debian.org/debian/ jessie/main libsepol1 amd64 2.3-2 [127 kB] Get:92 http://mirror.bm.debian.org/debian/ jessie/main libustr-1.0-1 amd64 1.0.4-3+b2 [79.6 kB] Get:93 http://mirror.bm.debian.org/debian/ jessie/main libpam-modules-bin amd64 1.1.8-3.1+deb8u2+b1 [104 kB] Get:94 http://mirror.bm.debian.org/debian/ jessie/main libpam-modules amd64 1.1.8-3.1+deb8u2+b1 [307 kB] Get:95 http://mirror.bm.debian.org/debian/ jessie/main sensible-utils all 0.0.9+deb8u1 [10.9 kB] Get:96 http://mirror.bm.debian.org/debian/ jessie/main debianutils amd64 4.4+b1 [99.1 kB] Get:97 http://mirror.bm.debian.org/debian/ jessie/main passwd amd64 1:4.2-3+deb8u4 [971 kB] Get:98 http://mirror.bm.debian.org/debian/ jessie/main libuuid1 amd64 2.25.2-6 [64.7 kB] Get:99 http://mirror.bm.debian.org/debian/ jessie/main libblkid1 amd64 2.25.2-6 [156 kB] Get:100 http://mirror.bm.debian.org/debian/ jessie/main libmount1 amd64 2.25.2-6 [164 kB] Get:101 http://mirror.bm.debian.org/debian/ jessie/main libsmartcols1 amd64 2.25.2-6 [110 kB] Get:102 http://mirror.bm.debian.org/debian/ jessie/main mount amd64 2.25.2-6 [168 kB] Get:103 http://mirror.bm.debian.org/debian/ jessie/main coreutils amd64 8.23-4 [2727 kB] Get:104 http://mirror.bm.debian.org/debian/ jessie/main initscripts amd64 2.88dsf-59 [87.2 kB] Get:105 http://mirror.bm.debian.org/debian/ jessie/main libexpat1 amd64 2.1.0-6+deb8u4 [80.2 kB] Get:106 http://mirror.bm.debian.org/debian/ jessie/main liblzma5 amd64 5.1.1alpha+20120614-2+b3 [194 kB] Get:107 http://mirror.bm.debian.org/debian/ jessie/main libio-string-perl all 1.08-3 [12.3 kB] Get:108 http://mirror.bm.debian.org/debian/ jessie/main libdata-stag-perl all 0.13-1 [476 kB] Get:109 http://mirror.bm.debian.org/debian/ jessie/main bioperl all 1.6.924-1 [419 kB] Get:110 http://mirror.bm.debian.org/debian/ jessie/main libbio-perl-perl all 1.6.924-1 [4763 kB] Get:111 http://mirror.bm.debian.org/debian/ jessie/main libcgi-session-perl all 4.48-1+deb8u1 [119 kB] Get:112 http://mirror.bm.debian.org/debian/ jessie/main libjson-perl all 2.61-1 [84.7 kB] Get:113 http://mirror.bm.debian.org/debian/ jessie/main liblist-moreutils-perl amd64 0.33-2+b1 [44.4 kB] Get:114 http://mirror.bm.debian.org/debian/ jessie/main libstatistics-descriptive-perl all 3.0607-1 [41.4 kB] Get:115 http://mirror.bm.debian.org/debian/ jessie/main openssl amd64 1.0.1t-1+deb8u8 [664 kB] Get:116 http://mirror.bm.debian.org/debian/ jessie/main ca-certificates all 20141019+deb8u3 [207 kB] Get:117 http://mirror.bm.debian.org/debian/ jessie/main netbase all 5.3 [19.0 kB] Get:118 http://mirror.bm.debian.org/debian/ jessie/main libio-socket-ssl-perl all 2.002-2+deb8u3 [172 kB] Get:119 http://mirror.bm.debian.org/debian/ jessie/main libnet-http-perl all 6.07-1 [24.8 kB] Get:120 http://mirror.bm.debian.org/debian/ jessie/main liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:121 http://mirror.bm.debian.org/debian/ jessie/main libio-html-perl all 1.001-1 [17.6 kB] Get:122 http://mirror.bm.debian.org/debian/ jessie/main libhttp-message-perl all 6.06-1 [80.1 kB] Get:123 http://mirror.bm.debian.org/debian/ jessie/main libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:124 http://mirror.bm.debian.org/debian/ jessie/main libhtml-tree-perl all 5.03-1 [210 kB] Get:125 http://mirror.bm.debian.org/debian/ jessie/main libwww-perl all 6.08-1 [194 kB] Get:126 http://mirror.bm.debian.org/debian/ jessie/main libjs-prototype all 1.7.1-3 [44.3 kB] Get:127 http://mirror.bm.debian.org/debian/ jessie/main ucf all 3.0030 [69.7 kB] Get:128 http://mirror.bm.debian.org/debian/ jessie/main libpng12-0 amd64 1.2.50-2+deb8u3 [173 kB] Get:129 http://mirror.bm.debian.org/debian/ jessie/main libfreetype6 amd64 2.5.2-3+deb8u2 [466 kB] Get:130 http://mirror.bm.debian.org/debian/ jessie/main libx11-data all 2:1.6.2-3+deb8u1 [126 kB] Get:131 http://mirror.bm.debian.org/debian/ jessie/main libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:132 http://mirror.bm.debian.org/debian/ jessie/main libxdmcp6 amd64 1:1.1.1-1+b1 [24.9 kB] Get:133 http://mirror.bm.debian.org/debian/ jessie/main libxcb1 amd64 1.10-3+b1 [44.4 kB] Get:134 http://mirror.bm.debian.org/debian/ jessie/main libx11-6 amd64 2:1.6.2-3+deb8u1 [728 kB] Get:135 http://mirror.bm.debian.org/debian/ jessie/main libxpm4 amd64 1:3.5.12-0+deb8u1 [49.2 kB] Get:136 http://mirror.bm.debian.org/debian/ jessie/main bash amd64 4.3-11+deb8u1 [1172 kB] Get:137 http://mirror.bm.debian.org/debian/ jessie/main libgpg-error0 amd64 1.17-3 [94.9 kB] Get:138 http://mirror.bm.debian.org/debian/ jessie/main libgcrypt20 amd64 1.6.3-2+deb8u4 [392 kB] Get:139 http://mirror.bm.debian.org/debian/ jessie/main libsystemd0 amd64 215-17+deb8u7 [89.4 kB] Get:140 http://mirror.bm.debian.org/debian/ jessie/main bsdutils amd64 1:2.25.2-6 [94.0 kB] Get:141 http://mirror.bm.debian.org/debian/ jessie/main dash amd64 0.5.7-4+b1 [109 kB] Get:142 http://mirror.bm.debian.org/debian/ jessie/main diffutils amd64 1:3.3-1+b1 [267 kB] Get:143 http://mirror.bm.debian.org/debian/ jessie/main e2fslibs amd64 1.42.12-2+b1 [186 kB] Get:144 http://mirror.bm.debian.org/debian/ jessie/main e2fsprogs amd64 1.42.12-2+b1 [750 kB] Get:145 http://mirror.bm.debian.org/debian/ jessie/main findutils amd64 4.4.2-9+b1 [485 kB] Get:146 http://mirror.bm.debian.org/debian/ jessie/main grep amd64 2.20-4.1 [325 kB] Get:147 http://mirror.bm.debian.org/debian/ jessie/main gzip amd64 1.6-4 [111 kB] Get:148 http://mirror.bm.debian.org/debian/ jessie/main hostname amd64 3.15 [13.9 kB] Get:149 http://mirror.bm.debian.org/debian/ jessie/main libattr1 amd64 1:2.4.47-2 [18.3 kB] Get:150 http://mirror.bm.debian.org/debian/ jessie/main libcap2 amd64 1:2.24-8 [15.3 kB] Get:151 http://mirror.bm.debian.org/debian/ jessie/main libudev1 amd64 215-17+deb8u7 [57.8 kB] Get:152 http://mirror.bm.debian.org/debian/ jessie/main tzdata all 2018e-0+deb8u1 [233 kB] Get:153 http://mirror.bm.debian.org/debian/ jessie/main util-linux amd64 2.25.2-6 [845 kB] Get:154 http://mirror.bm.debian.org/debian/ jessie/main libdevmapper1.02.1 amd64 2:1.02.90-2.2+deb8u1 [145 kB] Get:155 http://mirror.bm.debian.org/debian/ jessie/main dmsetup amd64 2:1.02.90-2.2+deb8u1 [69.1 kB] Get:156 http://mirror.bm.debian.org/debian/ jessie/main libcryptsetup4 amd64 2:1.6.6-5 [103 kB] Get:157 http://mirror.bm.debian.org/debian/ jessie/main libkmod2 amd64 18-3 [46.2 kB] Get:158 http://mirror.bm.debian.org/debian/ jessie/main adduser all 3.113+nmu3 [264 kB] Get:159 http://mirror.bm.debian.org/debian/ jessie/main libacl1 amd64 2.2.52-2 [27.9 kB] Get:160 http://mirror.bm.debian.org/debian/ jessie/main udev amd64 215-17+deb8u7 [876 kB] Get:161 http://mirror.bm.debian.org/debian/ jessie/main acl amd64 2.2.52-2 [58.4 kB] Get:162 http://mirror.bm.debian.org/debian/ jessie/main libcap2-bin amd64 1:2.24-8 [25.4 kB] Get:163 http://mirror.bm.debian.org/debian/ jessie/main systemd amd64 215-17+deb8u7 [2545 kB] Get:164 http://mirror.bm.debian.org/debian/ jessie/main systemd-sysv amd64 215-17+deb8u7 [36.7 kB] Get:165 http://mirror.bm.debian.org/debian/ jessie/main init amd64 1.22 [4674 B] Get:166 http://mirror.bm.debian.org/debian/ jessie/main login amd64 1:4.2-3+deb8u4 [722 kB] Get:167 http://mirror.bm.debian.org/debian/ jessie/main ncurses-bin amd64 5.9+20140913-1+deb8u3 [347 kB] Get:168 http://mirror.bm.debian.org/debian/ jessie/main sed amd64 4.2.2-4+deb8u1 [243 kB] Get:169 http://mirror.bm.debian.org/debian/ jessie/main tar amd64 1.27.1-2+deb8u1 [676 kB] Get:170 http://mirror.bm.debian.org/debian/ jessie/main sysvinit amd64 2.88dsf-59 [99.9 kB] Get:171 http://mirror.bm.debian.org/debian/ jessie/main libapt-pkg4.12 amd64 1.0.9.8.4 [792 kB] Get:172 http://mirror.bm.debian.org/debian/ jessie/main gpgv amd64 1.4.18-7+deb8u5 [209 kB] Get:173 http://mirror.bm.debian.org/debian/ jessie/main debian-archive-keyring all 2017.5~deb8u1 [56.7 kB] Get:174 http://mirror.bm.debian.org/debian/ jessie/main libusb-0.1-4 amd64 2:0.1.12-25 [21.9 kB] Get:175 http://mirror.bm.debian.org/debian/ jessie/main gnupg amd64 1.4.18-7+deb8u5 [1150 kB] Get:176 http://mirror.bm.debian.org/debian/ jessie/main apt amd64 1.0.9.8.4 [1109 kB] Get:177 http://mirror.bm.debian.org/debian/ jessie/main libdebconfclient0 amd64 0.192 [46.2 kB] Get:178 http://mirror.bm.debian.org/debian/ jessie/main base-passwd amd64 3.5.37 [64.5 kB] Get:179 http://mirror.bm.debian.org/debian/ jessie/main ncurses-base all 5.9+20140913-1+deb8u3 [222 kB] Get:180 http://mirror.bm.debian.org/debian/ jessie/main libslang2 amd64 2.3.0-2 [491 kB] Get:181 http://mirror.bm.debian.org/debian/ jessie/main libcomerr2 amd64 1.42.12-2+b1 [60.7 kB] Get:182 http://mirror.bm.debian.org/debian/ jessie/main libss2 amd64 1.42.12-2+b1 [65.0 kB] Get:183 http://mirror.bm.debian.org/debian/ jessie/main libpam-runtime all 1.1.8-3.1+deb8u2 [212 kB] Get:184 http://mirror.bm.debian.org/debian/ jessie/main multiarch-support amd64 2.19-18+deb8u10 [181 kB] Get:185 http://mirror.bm.debian.org/debian/ jessie/main debconf-i18n all 1.5.56+deb8u1 [206 kB] Get:186 http://mirror.bm.debian.org/debian/ jessie/main libclass-isa-perl all 0.36-5 [10.1 kB] Get:187 http://mirror.bm.debian.org/debian/ jessie/main libswitch-perl all 2.17-2 [20.5 kB] Get:188 http://mirror.bm.debian.org/debian/ jessie/main xz-utils amd64 5.1.1alpha+20120614-2+b3 [221 kB] Get:189 http://mirror.bm.debian.org/debian/ jessie/main libtimedate-perl all 2.3000-2 [42.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 65.8 MB in 9s (6596 kB/s) (Reading database ... 12837 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.19-18+deb8u10_amd64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.19-18+deb8u10) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. (Reading database ... 12840 files and directories currently installed.) Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.19-18+deb8u10_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.19-18+deb8u10) ... Installing new version of config file /etc/bindresvport.blacklist ... Installing new version of config file /etc/gai.conf ... dpkg: gcc-4.7-base:amd64: dependency problems, but removing anyway as you requested: libstdc++6:amd64 depends on gcc-4.7-base (= 4.7.2-5). libgcc1:amd64 depends on gcc-4.7-base (= 4.7.2-5). (Reading database ... 12830 files and directories currently installed.) Removing gcc-4.7-base:amd64 ... Selecting previously unselected package gcc-4.9-base:amd64. (Reading database ... 12821 files and directories currently installed.) Unpacking gcc-4.9-base:amd64 (from .../gcc-4.9-base_4.9.2-10+deb8u1_amd64.deb) ... Setting up gcc-4.9-base:amd64 (4.9.2-10+deb8u1) ... (Reading database ... 12830 files and directories currently installed.) Preparing to replace libstdc++6:amd64 4.7.2-5 (using .../libstdc++6_4.9.2-10+deb8u1_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.9.2-10+deb8u1) ... Processing triggers for libc-bin ... (Reading database ... 12843 files and directories currently installed.) Preparing to replace libgcc1:amd64 1:4.7.2-5 (using .../libgcc1_1%3a4.9.2-10+deb8u1_amd64.deb) ... Unpacking replacement libgcc1:amd64 ... Setting up libgcc1:amd64 (1:4.9.2-10+deb8u1) ... Processing triggers for libc-bin ... (Reading database ... 12843 files and directories currently installed.) Preparing to replace ttf-dejavu-core 2.33-3 (using .../ttf-dejavu-core_2.34-1_all.deb) ... Unpacking replacement ttf-dejavu-core ... Selecting previously unselected package fonts-dejavu-core. Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.34-1_all.deb) ... Selecting previously unselected package libpcre3:amd64. Unpacking libpcre3:amd64 (from .../libpcre3_2%3a8.35-3.3+deb8u4_amd64.deb) ... Setting up libpcre3:amd64 (2:8.35-3.3+deb8u4) ... Processing triggers for libc-bin ... (Reading database ... 12891 files and directories currently installed.) Preparing to replace libselinux1:amd64 2.1.9-5 (using .../libselinux1_2.3-2_amd64.deb) ... Unpacking replacement libselinux1:amd64 ... Setting up libselinux1:amd64 (2.3-2) ... Processing triggers for libc-bin ... (Reading database ... 12889 files and directories currently installed.) Preparing to replace dpkg 1.16.18 (using .../dpkg_1.17.27_amd64.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.17.27) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... 12880 files and directories currently installed.) Preparing to unpack .../perl_5.20.2-3+deb8u11_amd64.deb ... Unpacking perl (5.20.2-3+deb8u11) over (5.14.2-21+deb7u3) ... Preparing to unpack .../libtext-charwidth-perl_0.04-7+b3_amd64.deb ... Unpacking libtext-charwidth-perl (0.04-7+b3) over (0.04-7+b1) ... Preparing to unpack .../gbrowse-calign_2.54+dfsg-3+b1_amd64.deb ... Unpacking gbrowse-calign (2.54+dfsg-3+b1) over (2.48~dfsg-1) ... Preparing to unpack .../libhtml-parser-perl_3.71-1+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.71-1+b3) over (3.69-2) ... Preparing to unpack .../libdbd-sqlite3-perl_1.44-1_amd64.deb ... Unpacking libdbd-sqlite3-perl (1.44-1) over (1.37-1) ... Preparing to unpack .../perl-base_5.20.2-3+deb8u11_amd64.deb ... Unpacking perl-base (5.20.2-3+deb8u11) over (5.14.2-21+deb7u3) ... Setting up perl-base (5.20.2-3+deb8u11) ... 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(Reading database ... 12283 files and directories currently installed.) Preparing to unpack .../libncursesw5_5.9+20140913-1+deb8u3_amd64.deb ... Unpacking libncursesw5:amd64 (5.9+20140913-1+deb8u3) ... Setting up libncursesw5:amd64 (5.9+20140913-1+deb8u3) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package libprocps3:amd64. (Reading database ... 12292 files and directories currently installed.) Preparing to unpack .../libprocps3_2%3a3.3.9-9+deb8u1_amd64.deb ... Unpacking libprocps3:amd64 (2:3.3.9-9+deb8u1) ... Setting up libprocps3:amd64 (2:3.3.9-9+deb8u1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package procps. (Reading database ... 12299 files and directories currently installed.) Preparing to unpack .../procps_2%3a3.3.9-9+deb8u1_amd64.deb ... Unpacking procps (2:3.3.9-9+deb8u1) ... Setting up procps (2:3.3.9-9+deb8u1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match procps Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match procps Default-Stop values (none) invoke-rc.d: policy-rc.d denied execution of start. Selecting previously unselected package mime-support. (Reading database ... 12355 files and directories currently installed.) Preparing to unpack .../mime-support_3.58_all.deb ... Unpacking mime-support (3.58) ... Selecting previously unselected package libapr1:amd64. Preparing to unpack .../libapr1_1.5.1-3_amd64.deb ... Unpacking libapr1:amd64 (1.5.1-3) ... Selecting previously unselected package libdb5.3:amd64. Preparing to unpack .../libdb5.3_5.3.28-9+deb8u1_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28-9+deb8u1) ... Setting up libdb5.3:amd64 (5.3.28-9+deb8u1) ... 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Unpacking apt (1.0.9.8.4) over (0.9.7.9+deb7u7) ... Setting up apt (1.0.9.8.4) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Selecting previously unselected package libdebconfclient0:amd64. (Reading database ... 15012 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.192_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.192) ... Setting up libdebconfclient0:amd64 (0.192) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 15017 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.37_amd64.deb ... Unpacking base-passwd (3.5.37) over (3.5.26) ... Setting up base-passwd (3.5.37) ... Changing shell of daemon from /bin/sh to /usr/sbin/nologin Changing shell of bin from /bin/sh to /usr/sbin/nologin Changing shell of sys from /bin/sh to /usr/sbin/nologin Changing shell of games from /bin/sh to /usr/sbin/nologin Changing shell of man from /bin/sh to /usr/sbin/nologin Changing shell of lp from /bin/sh to /usr/sbin/nologin Changing shell of mail from /bin/sh to /usr/sbin/nologin Changing shell of news from /bin/sh to /usr/sbin/nologin Changing shell of uucp from /bin/sh to /usr/sbin/nologin Changing shell of proxy from /bin/sh to /usr/sbin/nologin Changing shell of www-data from /bin/sh to /usr/sbin/nologin Changing shell of backup from /bin/sh to /usr/sbin/nologin Changing shell of list from /bin/sh to /usr/sbin/nologin Changing shell of irc from /bin/sh to /usr/sbin/nologin Changing shell of gnats from /bin/sh to /usr/sbin/nologin Changing shell of nobody from /bin/sh to /usr/sbin/nologin 16 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 15018 files and directories currently installed.) Preparing to unpack .../ncurses-base_5.9+20140913-1+deb8u3_all.deb ... Unpacking ncurses-base (5.9+20140913-1+deb8u3) over (5.9-10) ... Setting up ncurses-base (5.9+20140913-1+deb8u3) ... (Reading database ... 15018 files and directories currently installed.) Preparing to unpack .../libslang2_2.3.0-2_amd64.deb ... Unpacking libslang2:amd64 (2.3.0-2) over (2.2.4-15) ... Setting up libslang2:amd64 (2.3.0-2) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 15018 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.12-2+b1_amd64.deb ... Unpacking libcomerr2:amd64 (1.42.12-2+b1) over (1.42.5-1.1+deb7u1) ... Setting up libcomerr2:amd64 (1.42.12-2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 15019 files and directories currently installed.) Preparing to unpack .../libss2_1.42.12-2+b1_amd64.deb ... Unpacking libss2:amd64 (1.42.12-2+b1) over (1.42.5-1.1+deb7u1) ... Setting up libss2:amd64 (1.42.12-2+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... (Reading database ... 15020 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.1.8-3.1+deb8u2_all.deb ... Unpacking libpam-runtime (1.1.8-3.1+deb8u2) over (1.1.3-7.1) ... Setting up libpam-runtime (1.1.8-3.1+deb8u2) ... (Reading database ... 15070 files and directories currently installed.) Preparing to unpack .../multiarch-support_2.19-18+deb8u10_amd64.deb ... Unpacking multiarch-support (2.19-18+deb8u10) over (2.13-38+deb7u10) ... Setting up multiarch-support (2.19-18+deb8u10) ... (Reading database ... 15070 files and directories currently installed.) Preparing to unpack .../debconf-i18n_1.5.56+deb8u1_all.deb ... Unpacking debconf-i18n (1.5.56+deb8u1) over (1.5.49) ... Preparing to unpack .../libclass-isa-perl_0.36-5_all.deb ... Unpacking libclass-isa-perl (0.36-5) over (0.36-3) ... Preparing to unpack .../libswitch-perl_2.17-2_all.deb ... Unpacking libswitch-perl (2.17-2) over (2.16-2) ... Preparing to unpack .../xz-utils_5.1.1alpha+20120614-2+b3_amd64.deb ... Unpacking xz-utils (5.1.1alpha+20120614-2+b3) over (5.1.1alpha+20120614-2) ... Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) over (1.2000-1) ... Setting up ttf-dejavu-core (2.34-1) ... Setting up libtext-charwidth-perl (0.04-7+b3) ... Setting up mime-support (3.58) ... Setting up libapr1:amd64 (1.5.1-3) ... Setting up libexpat1:amd64 (2.1.0-6+deb8u4) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Checking for services that may need to be restarted...done. Checking for services that may need to be restarted...done. Setting up libaprutil1:amd64 (1.5.4-1) ... Setting up libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-6) ... Setting up libnettle4:amd64 (2.7.1-5+deb8u2) ... Setting up libhogweed2:amd64 (2.7.1-5+deb8u2) ... Setting up libffi6:amd64 (3.1-2+deb8u1) ... Setting up libp11-kit0:amd64 (0.20.7-1) ... Setting up libtasn1-6:amd64 (4.2-3+deb8u3) ... Setting up libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Setting up libaprutil1-ldap:amd64 (1.5.4-1) ... Setting up liblua5.1-0:amd64 (5.1.5-7.1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Setting up apache2-bin (2.4.10-10+deb8u12) ... Setting up apache2-utils (2.4.10-10+deb8u12) ... Setting up apache2-data (2.4.10-10+deb8u12) ... Setting up apache2 (2.4.10-10+deb8u12) ... Enabling module mpm_event. Enabling module authz_core. Enabling module authz_host. Enabling module authn_core. Enabling module auth_basic. Enabling module access_compat. Enabling module authn_file. Enabling module authz_user. Enabling module alias. Enabling module dir. Enabling module autoindex. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module filter. Enabling module deflate. Enabling module status. Enabling module reqtimeout. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. invoke-rc.d: policy-rc.d denied execution of start. Setting up libio-string-perl (1.08-3) ... Setting up libdata-stag-perl (0.13-1) ... Setting up libbio-perl-perl (1.6.924-1) ... Setting up bioperl (1.6.924-1) ... Setting up libbio-graphics-perl (2.39-2) ... Setting up libcgi-session-perl (4.48-1+deb8u1) ... Setting up libjson-perl (2.61-1) ... Setting up liblist-moreutils-perl (0.33-2+b1) ... Setting up libstatistics-descriptive-perl (3.0607-1) ... Setting up openssl (1.0.1t-1+deb8u8) ... Setting up ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 39 added, 36 removed; done. Setting up liburi-perl (1.64-1) ... Setting up libhtml-parser-perl (3.71-1+b3) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libnet-ssleay-perl (1.65-1+deb8u1) ... Setting up netbase (5.3) ... Installing new version of config file /etc/protocols ... Installing new version of config file /etc/services ... Setting up libio-socket-ssl-perl (2.002-2+deb8u3) ... Setting up libnet-http-perl (6.07-1) ... Setting up libterm-readkey-perl (2.32-1+b1) ... Setting up sqlite3 (3.8.7.1-1+deb8u2) ... Setting up libdbi-perl (1.631-3+b1) ... Setting up libdbd-sqlite3-perl (1.44-1) ... Setting up libjs-prototype (1.7.1-3) ... Setting up libanyevent-perl (7.070-3) ... Setting up libanyevent-cachedns-perl (0.08-1) ... Setting up libcommon-sense-perl (3.73-2+b3) ... Setting up libanyevent-http-perl (2.21-1) ... Setting up libstring-approx-perl (3.27-1+b2) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up ucf (3.0030) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-simple-perl (2.20-1) ... Setting up liblocale-gettext-perl (1.05-8+b1) ... Setting up libtext-iconv-perl (1.7-5+b2) ... Setting up libgdbm3:amd64 (1.8.3-13.1) ... Setting up libpng12-0:amd64 (1.2.50-2+deb8u3) ... Setting up libfreetype6:amd64 (2.5.2-3+deb8u2) ... Setting up libx11-data (2:1.6.2-3+deb8u1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1+b1) ... Setting up libxcb1:amd64 (1.10-3+b1) ... Setting up libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Setting up libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Setting up debconf-i18n (1.5.56+deb8u1) ... Setting up libclass-isa-perl (0.36-5) ... Setting up libswitch-perl (2.17-2) ... Setting up xz-utils (5.1.1alpha+20120614-2+b3) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libwww-perl (6.08-1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libvm-ec2-perl (1.28-1) ... Setting up gbrowse (2.54+dfsg-3) ... Installing new version of config file /etc/gbrowse/GBrowse.conf ... Installing new version of config file /etc/gbrowse/synteny/oryza.synconf.disabled ... Installing new version of config file /etc/gbrowse/plugins/LDAPAuthenticate.pm ... Installing new version of config file /etc/gbrowse/plugins/SequenceDumper.pm ... Installing new version of config file /etc/gbrowse/languages/is.pm ... Installing new version of config file /etc/init.d/gbrowse-slave ... apache2_invoke: Enable configuration gbrowse invoke-rc.d: policy-rc.d denied execution of reload. Setting up gbrowse-calign (2.54+dfsg-3+b1) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... Processing triggers for systemd (215-17+deb8u7) ... Processing triggers for ca-certificates (20141019+deb8u3) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. 1m42.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', '-yf', 'dist-upgrade'] 1m42.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m45.7s DUMP: c58dd1ad19dd97acb5ff8b7cd65de431 - 1m45.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m45.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 1m45.8s DUMP: Package: gbrowse-calign Source: gbrowse (2.54+dfsg-3) Version: 2.54+dfsg-3+b1 Installed-Size: 57 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.20.0-4), perlapi-5.20.0, libc6 (>= 2.4), gbrowse Description-en: CAlign helper This package provides the CAlign helper for use with Realign. It speeds up Smith-Waterman alignment. Description-md5: 7aa5fca05830bdeaf9c3c3aa626a2408 Homepage: http://www.gbrowse.org/ Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.54+dfsg-3+b1_amd64.deb Size: 34810 MD5sum: 9f5f235d6b276bcae5f39bb3c01417eb SHA1: d5a07945664593872747cce12b2c88903c753991 SHA256: 06647f021526dfcc3e7129c91bfc6a6c867fd80f7557a7aa2c91e05d9508aa7a 1m45.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 1m45.8s INFO: apt-cache knows about the following packages: gbrowse-calign 1m45.8s INFO: Running scripts pre_install 1m45.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_database-server'] 1m45.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_database-server'] 1m45.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_exceptions'] 1m45.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_exceptions'] 1m45.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_extras'] 1m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_extras'] 1m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_foreign_architecture'] 1m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_foreign_architecture'] 1m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'policy'] 1m46.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ jessie/main Translation-en 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 1m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'policy'] 1m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'policy', 'gbrowse-calign'] 1m46.1s DUMP: gbrowse-calign: Installed: 2.54+dfsg-3+b1 Candidate: 2.54+dfsg-3+b1 Version table: *** 2.54+dfsg-3+b1 0 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 1m46.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'policy', 'gbrowse-calign'] 1m46.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', '-y', 'install', 'gbrowse-calign'] 1m46.7s DUMP: Reading package lists... Building dependency tree... Reading state information... gbrowse-calign is already the newest version. The following packages were automatically installed and are no longer required: libclass-isa-perl libgd2-xpm libjpeg8 libswitch-perl ttf-dejavu-core Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m46.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', '-y', 'install', 'gbrowse-calign'] 1m46.7s INFO: Running scripts post_install 1m46.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_install_exceptions'] 1m46.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_install_exceptions'] 1m46.7s INFO: Running scripts post_distupgrade 1m46.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m46.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m46.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_exceptions'] 1m46.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_exceptions'] 1m46.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_experimental'] 1m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_experimental'] 1m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_hack_debsums'] 1m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_hack_debsums'] 1m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_zz_backports'] 1m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_distupgrade_zz_backports'] 1m46.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 1m49.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 1m49.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 1m51.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 1m51.8s INFO: Running scripts pre_install 1m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_database-server'] 1m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_database-server'] 1m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_exceptions'] 1m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_exceptions'] 1m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_extras'] 1m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_extras'] 1m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_foreign_architecture'] 1m51.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_foreign_architecture'] 1m51.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m51.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m51.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'policy'] 1m52.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ jessie/main Translation-en 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages release v=8.11,o=Debian,a=oldstable,n=jessie,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 1m52.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'policy'] 1m52.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'policy', 'gbrowse-calign'] 1m52.0s DUMP: gbrowse-calign: Installed: 2.54+dfsg-3+b1 Candidate: 2.54+dfsg-3+b1 Version table: *** 2.54+dfsg-3+b1 0 500 http://mirror.bm.debian.org/debian/ jessie/main amd64 Packages 100 /var/lib/dpkg/status 1m52.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-cache', 'policy', 'gbrowse-calign'] 1m52.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', '-y', 'install', 'gbrowse-calign=2.54+dfsg-3+b1'] 1m52.8s DUMP: Reading package lists... Building dependency tree... Reading state information... gbrowse-calign is already the newest version. The following packages were automatically installed and are no longer required: libclass-isa-perl libgd2-xpm libjpeg8 libswitch-perl ttf-dejavu-core Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m52.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', '-y', 'install', 'gbrowse-calign=2.54+dfsg-3+b1'] 1m52.8s INFO: Running scripts post_install 1m52.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_install_exceptions'] 1m52.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_install_exceptions'] 1m52.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 1m55.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 1m55.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m55.2s DUMP: install ok installed acl acl 2.2.52-2 install ok installed adduser adduser 3.113+nmu3 install ok installed apache2 apache2 2.4.10-10+deb8u12 install ok installed apache2-bin apache2-bin 2.4.10-10+deb8u12 install ok installed apache2-data apache2-data 2.4.10-10+deb8u12 install ok installed apache2-utils apache2-utils 2.4.10-10+deb8u12 install ok installed apt apt 1.0.9.8.4 install ok installed base-files base-files 8+deb8u11 install ok installed base-passwd base-passwd 3.5.37 install ok installed bash bash 4.3-11+deb8u1 install ok installed bioperl bioperl 1.6.924-1 install ok installed bsdutils bsdutils 1:2.25.2-6 install ok installed ca-certificates ca-certificates 20141019+deb8u3 install ok installed coreutils coreutils 8.23-4 install ok installed dash dash 0.5.7-4+b1 install ok installed debconf debconf 1.5.56+deb8u1 install ok installed debconf-i18n debconf-i18n 1.5.56+deb8u1 install ok installed debian-archive-keyring debian-archive-keyring 2017.5~deb8u1 install ok installed debianutils debianutils 4.4+b1 install ok installed diffutils diffutils 1:3.3-1+b1 install ok installed dmsetup dmsetup 2:1.02.90-2.2+deb8u1 install ok installed dpkg dpkg 1.17.27 install ok installed e2fslibs:amd64 e2fslibs 1.42.12-2+b1 install ok installed e2fsprogs e2fsprogs 1.42.12-2+b1 install ok installed findutils findutils 4.4.2-9+b1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.3+deb8u1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.34-1 install ok installed gbrowse gbrowse 2.54+dfsg-3 install ok installed gbrowse-calign gbrowse-calign 2.54+dfsg-3+b1 install ok installed gcc-4.9-base:amd64 gcc-4.9-base 4.9.2-10+deb8u1 install ok installed gnupg gnupg 1.4.18-7+deb8u5 install ok installed gpgv gpgv 1.4.18-7+deb8u5 install ok installed grep grep 2.20-4.1 install ok installed gzip gzip 1.6-4 install ok installed hostname hostname 3.15 install ok installed init init 1.22 install ok installed initscripts initscripts 2.88dsf-59 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.52-2 install ok installed libanyevent-cachedns-perl libanyevent-cachedns-perl 0.08-1 install ok installed libanyevent-http-perl libanyevent-http-perl 2.21-1 install ok installed libanyevent-perl libanyevent-perl 7.070-3 install ok installed libapr1:amd64 libapr1 1.5.1-3 install ok installed libaprutil1:amd64 libaprutil1 1.5.4-1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.5.4-1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.5.4-1 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 1.0.9.8.4 install ok installed libattr1:amd64 libattr1 1:2.4.47-2 install ok installed libaudit-common libaudit-common 1:2.4-1 install ok installed libaudit1:amd64 libaudit1 1:2.4-1+b1 install ok installed libbio-graphics-perl libbio-graphics-perl 2.39-2 install ok installed libbio-perl-perl libbio-perl-perl 1.6.924-1 install ok installed libblkid1:amd64 libblkid1 2.25.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-7+b3 install ok installed libc-bin libc-bin 2.19-18+deb8u10 install ok installed libc6:amd64 libc6 2.19-18+deb8u10 install ok installed libcap2:amd64 libcap2 1:2.24-8 install ok installed libcap2-bin libcap2-bin 1:2.24-8 install ok installed libcgi-session-perl libcgi-session-perl 4.48-1+deb8u1 install ok installed libclass-isa-perl libclass-isa-perl 0.36-5 install ok installed libcomerr2:amd64 libcomerr2 1.42.12-2+b1 install ok installed libcommon-sense-perl libcommon-sense-perl 3.73-2+b3 install ok installed libcryptsetup4:amd64 libcryptsetup4 2:1.6.6-5 install ok installed libdata-stag-perl libdata-stag-perl 0.13-1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-9+deb8u1 install ok installed libdbd-sqlite3-perl libdbd-sqlite3-perl 1.44-1 install ok installed libdbi-perl libdbi-perl 1.631-3+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.192 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.90-2.2+deb8u1 install ok installed libencode-locale-perl libencode-locale-perl 1.03-1 install ok installed libexpat1:amd64 libexpat1 2.1.0-6+deb8u4 install ok installed libffi6:amd64 libffi6 3.1-2+deb8u1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.3+deb8u1 install ok installed libfreetype6:amd64 libfreetype6 2.5.2-3+deb8u2 install ok installed libgcc1:amd64 libgcc1 1:4.9.2-10+deb8u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.6.3-2+deb8u4 install ok installed libgd-perl libgd-perl 2.53-1+b1 install ok installed libgd2-xpm:amd64 libgd2-xpm 2.0.36~rc1~dfsg-6.1+deb7u2 install ok installed libgd3:amd64 libgd3 2.1.0-5+deb8u11 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-13.1 install ok installed libgmp10:amd64 libgmp10 2:6.0.0+dfsg-6 install ok installed libgnutls-deb0-28:amd64 libgnutls-deb0-28 3.3.8-6+deb8u7 install ok installed libgpg-error0:amd64 libgpg-error0 1.17-3 install ok installed libhogweed2:amd64 libhogweed2 2.7.1-5+deb8u2 install ok installed libhtml-parser-perl libhtml-parser-perl 3.71-1+b3 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-2 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.06-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.002-2+deb8u3 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libjbig0:amd64 libjbig0 2.1-3.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.3.1-12 install ok installed libjpeg8:amd64 libjpeg8 8d-1+deb7u1 install ok installed libjs-prototype libjs-prototype 1.7.1-3 install ok installed libjs-scriptaculous libjs-scriptaculous 1.9.0-2 install ok installed libjson-perl libjson-perl 2.61-1 install ok installed libkmod2:amd64 libkmod2 18-3 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.40+dfsg-1+deb8u4 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.33-2+b1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-8+b1 install ok installed liblua5.1-0:amd64 liblua5.1-0 5.1.5-7.1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2+b3 install ok installed libmount1:amd64 libmount1 2.25.2-6 install ok installed libncurses5:amd64 libncurses5 5.9+20140913-1+deb8u3 install ok installed libncursesw5:amd64 libncursesw5 5.9+20140913-1+deb8u3 install ok installed libnet-http-perl libnet-http-perl 6.07-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.65-1+deb8u1 install ok installed libnettle4:amd64 libnettle4 2.7.1-5+deb8u2 install ok installed libp11-kit0:amd64 libp11-kit0 0.20.7-1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.1+deb8u2+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.1+deb8u2+b1 install ok installed libpam-runtime libpam-runtime 1.1.8-3.1+deb8u2 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.1+deb8u2+b1 install ok installed libpcre3:amd64 libpcre3 2:8.35-3.3+deb8u4 install ok installed libpng12-0:amd64 libpng12-0 1.2.50-2+deb8u3 install ok installed libprocps3:amd64 libprocps3 2:3.3.9-9+deb8u1 install ok installed libreadline6:amd64 libreadline6 6.3-8+b3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.26.dfsg1-13+deb8u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.26.dfsg1-13+deb8u1 install ok installed libselinux1:amd64 libselinux1 2.3-2 install ok installed libsemanage-common libsemanage-common 2.3-1 install ok installed libsemanage1:amd64 libsemanage1 2.3-1+b1 install ok installed libsepol1:amd64 libsepol1 2.3-2 install ok installed libslang2:amd64 libslang2 2.3.0-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.25.2-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.8.7.1-1+deb8u2 install ok installed libss2:amd64 libss2 1.42.12-2+b1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb8u8 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0607-1 install ok installed libstdc++6:amd64 libstdc++6 4.9.2-10+deb8u1 install ok installed libstring-approx-perl libstring-approx-perl 3.27-1+b2 install ok installed libswitch-perl libswitch-perl 2.17-2 install ok installed libsystemd0:amd64 libsystemd0 215-17+deb8u7 install ok installed libtasn1-6:amd64 libtasn1-6 4.2-3+deb8u3 install ok installed libterm-readkey-perl libterm-readkey-perl 2.32-1+b1 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b3 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b2 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtiff5:amd64 libtiff5 4.0.3-12.3+deb8u5 install ok installed libtimedate-perl libtimedate-perl 2.3000-2 install ok installed libtinfo5:amd64 libtinfo5 5.9+20140913-1+deb8u3 install ok installed libudev1:amd64 libudev1 215-17+deb8u7 install ok installed liburi-perl liburi-perl 1.64-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-25 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3+b2 install ok installed libuuid1:amd64 libuuid1 2.25.2-6 install ok installed libvm-ec2-perl libvm-ec2-perl 1.28-1 install ok installed libvpx1:amd64 libvpx1 1.3.0-3+deb8u1 install ok installed libwww-perl libwww-perl 6.08-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.2-3+deb8u1 install ok installed libx11-data libx11-data 2:1.6.2-3+deb8u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxcb1:amd64 libxcb1 1.10-3+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1+b1 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0116+dfsg-1+deb8u2 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.11-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.07-1 install ok installed libxml-sax-perl libxml-sax-perl 0.99+dfsg-2 install ok installed libxml-simple-perl libxml-simple-perl 2.20-1 install ok installed libxml2:amd64 libxml2 2.9.1+dfsg1-5+deb8u6 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-0+deb8u1 install ok installed login login 1:4.2-3+deb8u4 install ok installed lsb-base lsb-base 4.1+Debian13+nmu1 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.58 install ok installed mount mount 2.25.2-6 install ok installed multiarch-support multiarch-support 2.19-18+deb8u10 install ok installed ncurses-base ncurses-base 5.9+20140913-1+deb8u3 install ok installed ncurses-bin ncurses-bin 5.9+20140913-1+deb8u3 install ok installed netbase netbase 5.3 install ok installed openssl openssl 1.0.1t-1+deb8u8 install ok installed passwd passwd 1:4.2-3+deb8u4 install ok installed perl perl 5.20.2-3+deb8u11 install ok installed perl-base perl-base 5.20.2-3+deb8u11 install ok installed perl-modules perl-modules 5.20.2-3+deb8u11 install ok installed procps procps 2:3.3.9-9+deb8u1 install ok installed readline-common readline-common 6.3-8 install ok installed sed sed 4.2.2-4+deb8u1 install ok installed sensible-utils sensible-utils 0.0.9+deb8u1 install ok installed sqlite3 sqlite3 3.8.7.1-1+deb8u2 install ok installed startpar startpar 0.59-3 install ok installed systemd systemd 215-17+deb8u7 install ok installed systemd-sysv systemd-sysv 215-17+deb8u7 install ok installed sysv-rc sysv-rc 2.88dsf-59 install ok installed sysvinit sysvinit 2.88dsf-59 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59 install ok installed tar tar 1.27.1-2+deb8u1 install ok installed ttf-dejavu-core ttf-dejavu-core 2.34-1 install ok installed tzdata tzdata 2018e-0+deb8u1 install ok installed ucf ucf 3.0030 install ok installed udev udev 215-17+deb8u7 install ok installed util-linux util-linux 2.25.2-6 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2+b3 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-2+b1 1m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m57.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpupEKjd', '-ac', '--ignore-obsolete'] 2m0.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpupEKjd', '-ac', '--ignore-obsolete'] 2m0.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m0.4s DUMP: 0.15.1 2m0.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m0.4s INFO: Running adequate version 0.15.1 now. 2m0.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'gbrowse-calign'] 2m0.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'gbrowse-calign'] 2m0.5s INFO: Running scripts pre_remove 2m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_remove_exceptions'] 2m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/pre_remove_exceptions'] 2m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', 'remove', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libdbi-perl', 'libaprutil1-dbd-sqlite3:amd64', 'libtiff5:amd64', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'apache2', 'libbio-graphics-perl', 'gbrowse', 'libio-html-perl', 'libtimedate-perl', 'ca-certificates', 'libpng12-0:amd64', 'libfile-listing-perl', 'libp11-kit0:amd64', 'apache2-bin', 'libxml-namespacesupport-perl', 'libxml-sax-perl', 'libxcb1:amd64', 'libcgi-session-perl', 'apache2-utils', 'libio-socket-ssl-perl', 'libjs-prototype', 'libx11-6:amd64', 'libbio-perl-perl', 'libvm-ec2-perl', 'libjpeg8:amd64', 'libwww-perl', 'libjs-scriptaculous', 'libswitch-perl', 'libgmp10:amd64', 'libxml-sax-base-perl', 'libgd3:amd64', 'libanyevent-perl', 'libdata-stag-perl', 'libanyevent-cachedns-perl', 'libhtml-parser-perl', 'libhttp-message-perl', 'libxdmcp6:amd64', 'libgd-perl', 'libgnutls-deb0-28:amd64', 'mime-support', 'libxml2:amd64', 'openssl', 'libanyevent-http-perl', 'fontconfig-config', 'libhtml-tagset-perl', 'libfreetype6:amd64', 'libencode-locale-perl', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libfontconfig1:amd64', 'libxml-simple-perl', 'libxpm4:amd64', 'libnettle4:amd64', 'bioperl', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'perl', 'libhttp-daemon-perl', 'netbase', 'libjson-perl', 'liblua5.1-0:amd64', 'apache2-data', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libhttp-cookies-perl', 'libaprutil1-ldap:amd64', 'libgd2-xpm:amd64', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxml-libxml-perl', 'libffi6:amd64', 'libwww-robotrules-perl', 'libjpeg62-turbo:amd64', 'libio-string-perl', 'libx11-data', 'libhttp-negotiate-perl', 'libaprutil1:amd64', 'libvpx1:amd64', 'perl-modules', 'libldap-2.4-2:amd64', 'sqlite3', 'libterm-readkey-perl', 'libnet-http-perl', 'liburi-perl', 'libstatistics-descriptive-perl', 'libjbig0:amd64', 'libstring-approx-perl', 'libsasl2-modules-db:amd64', 'libexpat1:amd64', 'libxau6:amd64', 'liblwp-protocol-https-perl', 'liblist-moreutils-perl', 'libsasl2-2:amd64', 'libhtml-tree-perl', 'libhttp-date-perl', 'libcommon-sense-perl', 'libhogweed2:amd64', 'gbrowse-calign'] 2m9.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: apache2 apache2-bin apache2-data apache2-utils bioperl ca-certificates fontconfig-config fonts-dejavu-core gbrowse gbrowse-calign libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libbio-graphics-perl libbio-perl-perl libcgi-session-perl libclass-isa-perl libcommon-sense-perl libdata-stag-perl libdb5.1 libdbd-sqlite3-perl libdbi-perl libencode-locale-perl libexpat1 libffi6 libfile-listing-perl libfontconfig1 libfreetype6 libgd-perl libgd2-xpm libgd3 libgdbm3 libgmp10 libgnutls-deb0-28 libhogweed2 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo libjpeg8 libjs-prototype libjs-scriptaculous libjson-perl libldap-2.4-2 liblist-moreutils-perl liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libnettle4 libp11-kit0 libpng12-0 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libstring-approx-perl libswitch-perl libtasn1-6 libterm-readkey-perl libtiff5 libtimedate-perl liburi-perl libvm-ec2-perl libvpx1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 mime-support netbase openssl perl perl-modules sqlite3 ttf-dejavu-core 0 upgraded, 0 newly installed, 101 to remove and 0 not upgraded. After this operation, 107 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15072 files and directories currently installed.) Removing gbrowse-calign (2.54+dfsg-3+b1) ... Removing gbrowse (2.54+dfsg-3) ... Conf gbrowse disabled. apache2_invoke prerm: Disable configuration gbrowse invoke-rc.d: policy-rc.d denied execution of reload. Removing apache2 (2.4.10-10+deb8u12) ... invoke-rc.d: policy-rc.d denied execution of stop. Removing apache2-bin (2.4.10-10+deb8u12) ... Removing apache2-data (2.4.10-10+deb8u12) ... Removing apache2-utils (2.4.10-10+deb8u12) ... Removing libbio-graphics-perl (2.39-2) ... Removing bioperl (1.6.924-1) ... Removing libvm-ec2-perl (1.28-1) ... Removing libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Removing libgd-perl (2.53-1+b1) ... Removing libgd3:amd64 (2.1.0-5+deb8u11) ... Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Removing ttf-dejavu-core (2.34-1) ... Removing fonts-dejavu-core (2.34-1) ... Removing libanyevent-cachedns-perl (0.08-1) ... Removing libanyevent-http-perl (2.21-1) ... Removing libanyevent-perl (7.070-3) ... Removing libaprutil1-ldap:amd64 (1.5.4-1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.5.4-1) ... Removing libaprutil1:amd64 (1.5.4-1) ... Removing libapr1:amd64 (1.5.1-3) ... Removing libbio-perl-perl (1.6.924-1) ... Removing libcgi-session-perl (4.48-1+deb8u1) ... Removing libclass-isa-perl (0.36-5) ... Removing libcommon-sense-perl (3.73-2+b3) ... Removing libdata-stag-perl (0.13-1) ... Removing libdb5.1:amd64 (5.1.29-5) ... Removing libdbd-sqlite3-perl (1.44-1) ... Removing libdbi-perl (1.631-3+b1) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libexpat1:amd64 (2.1.0-6+deb8u4) ... Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing libp11-kit0:amd64 (0.20.7-1) ... Removing libffi6:amd64 (3.1-2+deb8u1) ... Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Removing libxml-simple-perl (2.20-1) ... Removing libxml-libxml-perl (2.0116+dfsg-1+deb8u2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Removing libio-string-perl (1.08-3) ... Removing libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Removing libjbig0:amd64 (2.1-3.1) ... Removing libjpeg62-turbo:amd64 (1:1.3.1-12) ... Removing libjpeg8:amd64 (8d-1+deb7u1) ... Removing libjs-scriptaculous (1.9.0-2) ... Removing libjs-prototype (1.7.1-3) ... Removing libjson-perl (2.61-1) ... Removing libstatistics-descriptive-perl (3.0607-1) ... Removing liblist-moreutils-perl (0.33-2+b1) ... Removing liblua5.1-0:amd64 (5.1.5-7.1) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing libsasl2-modules-db:amd64 (2.1.26.dfsg1-13+deb8u1) ... Removing sqlite3 (3.8.7.1-1+deb8u2) ... Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Removing libstring-approx-perl (3.27-1+b2) ... Removing libswitch-perl (2.17-2) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Removing libterm-readkey-perl (2.32-1+b1) ... Removing libvpx1:amd64 (1.3.0-3+deb8u1) ... Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Removing libx11-data (2:1.6.2-3+deb8u1) ... Removing libxcb1:amd64 (1.10-3+b1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Removing libxml-namespacesupport-perl (1.11-1) ... Removing libxml-sax-base-perl (1.07-1) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Removing mime-support (3.58) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libwww-perl (6.08-1) ... Removing ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-1) ... Removing libhtml-parser-perl (3.71-1+b3) ... Removing libhtml-tagset-perl (3.20-2) ... Removing libhttp-cookies-perl (6.01-1) ... Removing libio-socket-ssl-perl (2.002-2+deb8u3) ... Removing libnet-http-perl (6.07-1) ... Removing libnet-ssleay-perl (1.65-1+deb8u1) ... Removing openssl (1.0.1t-1+deb8u8) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libwww-robotrules-perl (6.01-1) ... Removing netbase (5.3) ... Removing libhttp-message-perl (6.06-1) ... Removing libencode-locale-perl (1.03-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libtimedate-perl (2.3000-2) ... Removing liburi-perl (1.64-1) ... Removing perl (5.20.2-3+deb8u11) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Removing perl-modules (5.20.2-3+deb8u11) ... Processing triggers for libc-bin (2.19-18+deb8u10) ... 2m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', 'remove', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libdbi-perl', 'libaprutil1-dbd-sqlite3:amd64', 'libtiff5:amd64', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'apache2', 'libbio-graphics-perl', 'gbrowse', 'libio-html-perl', 'libtimedate-perl', 'ca-certificates', 'libpng12-0:amd64', 'libfile-listing-perl', 'libp11-kit0:amd64', 'apache2-bin', 'libxml-namespacesupport-perl', 'libxml-sax-perl', 'libxcb1:amd64', 'libcgi-session-perl', 'apache2-utils', 'libio-socket-ssl-perl', 'libjs-prototype', 'libx11-6:amd64', 'libbio-perl-perl', 'libvm-ec2-perl', 'libjpeg8:amd64', 'libwww-perl', 'libjs-scriptaculous', 'libswitch-perl', 'libgmp10:amd64', 'libxml-sax-base-perl', 'libgd3:amd64', 'libanyevent-perl', 'libdata-stag-perl', 'libanyevent-cachedns-perl', 'libhtml-parser-perl', 'libhttp-message-perl', 'libxdmcp6:amd64', 'libgd-perl', 'libgnutls-deb0-28:amd64', 'mime-support', 'libxml2:amd64', 'openssl', 'libanyevent-http-perl', 'fontconfig-config', 'libhtml-tagset-perl', 'libfreetype6:amd64', 'libencode-locale-perl', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libfontconfig1:amd64', 'libxml-simple-perl', 'libxpm4:amd64', 'libnettle4:amd64', 'bioperl', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'perl', 'libhttp-daemon-perl', 'netbase', 'libjson-perl', 'liblua5.1-0:amd64', 'apache2-data', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libhttp-cookies-perl', 'libaprutil1-ldap:amd64', 'libgd2-xpm:amd64', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxml-libxml-perl', 'libffi6:amd64', 'libwww-robotrules-perl', 'libjpeg62-turbo:amd64', 'libio-string-perl', 'libx11-data', 'libhttp-negotiate-perl', 'libaprutil1:amd64', 'libvpx1:amd64', 'perl-modules', 'libldap-2.4-2:amd64', 'sqlite3', 'libterm-readkey-perl', 'libnet-http-perl', 'liburi-perl', 'libstatistics-descriptive-perl', 'libjbig0:amd64', 'libstring-approx-perl', 'libsasl2-modules-db:amd64', 'libexpat1:amd64', 'libxau6:amd64', 'liblwp-protocol-https-perl', 'liblist-moreutils-perl', 'libsasl2-2:amd64', 'libhtml-tree-perl', 'libhttp-date-perl', 'libcommon-sense-perl', 'libhogweed2:amd64', 'gbrowse-calign'] 2m9.7s INFO: Running scripts post_remove 2m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_remove_exceptions'] 2m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_remove_exceptions'] 2m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_remove_extras'] 2m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_remove_extras'] 2m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg', '--purge', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libdbi-perl', 'libaprutil1-dbd-sqlite3:amd64', 'libtiff5:amd64', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'apache2', 'libbio-graphics-perl', 'gbrowse', 'libio-html-perl', 'libtimedate-perl', 'ca-certificates', 'libpng12-0:amd64', 'libfile-listing-perl', 'libp11-kit0:amd64', 'apache2-bin', 'libxml-namespacesupport-perl', 'libxml-sax-perl', 'libxcb1:amd64', 'libcgi-session-perl', 'apache2-utils', 'libio-socket-ssl-perl', 'libjs-prototype', 'libx11-6:amd64', 'libbio-perl-perl', 'libvm-ec2-perl', 'libjpeg8:amd64', 'libwww-perl', 'libjs-scriptaculous', 'libswitch-perl', 'libgmp10:amd64', 'libxml-sax-base-perl', 'libgd3:amd64', 'libanyevent-perl', 'libdata-stag-perl', 'libanyevent-cachedns-perl', 'libhtml-parser-perl', 'libhttp-message-perl', 'libxdmcp6:amd64', 'libgd-perl', 'libgnutls-deb0-28:amd64', 'mime-support', 'libxml2:amd64', 'openssl', 'libanyevent-http-perl', 'fontconfig-config', 'libhtml-tagset-perl', 'libfreetype6:amd64', 'libencode-locale-perl', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libfontconfig1:amd64', 'libxml-simple-perl', 'libxpm4:amd64', 'libnettle4:amd64', 'bioperl', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'perl', 'libhttp-daemon-perl', 'netbase', 'libjson-perl', 'liblua5.1-0:amd64', 'apache2-data', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libhttp-cookies-perl', 'libaprutil1-ldap:amd64', 'libgd2-xpm:amd64', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxml-libxml-perl', 'libffi6:amd64', 'libwww-robotrules-perl', 'libjpeg62-turbo:amd64', 'libio-string-perl', 'libx11-data', 'libhttp-negotiate-perl', 'libaprutil1:amd64', 'libvpx1:amd64', 'perl-modules', 'libldap-2.4-2:amd64', 'sqlite3', 'libterm-readkey-perl', 'libnet-http-perl', 'liburi-perl', 'libstatistics-descriptive-perl', 'libjbig0:amd64', 'libstring-approx-perl', 'libsasl2-modules-db:amd64', 'libexpat1:amd64', 'libxau6:amd64', 'liblwp-protocol-https-perl', 'liblist-moreutils-perl', 'libsasl2-2:amd64', 'libhtml-tree-perl', 'libhttp-date-perl', 'libcommon-sense-perl', 'libhogweed2:amd64'] 2m11.4s DUMP: dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed (Reading database ... 7791 files and directories currently installed.) Removing fonts-dejavu-core (2.34-1) ... Purging configuration files for fonts-dejavu-core (2.34-1) ... dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed Removing libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Purging configuration files for libtiff5:amd64 (4.0.3-12.3+deb8u5) ... Removing libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Purging configuration files for libssl1.0.0:amd64 (1.0.1t-1+deb8u8) ... Removing libgdbm3:amd64 (1.8.3-13.1) ... Purging configuration files for libgdbm3:amd64 (1.8.3-13.1) ... Removing apache2 (2.4.10-10+deb8u12) ... Purging configuration files for apache2 (2.4.10-10+deb8u12) ... dpkg: warning: while removing apache2, directory '/var/www/html' not empty so not removed dpkg: warning: ignoring request to remove libbio-graphics-perl which isn't installed Removing gbrowse (2.54+dfsg-3) ... Purging configuration files for gbrowse (2.54+dfsg-3) ... dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed Removing ca-certificates (20141019+deb8u3) ... Purging configuration files for ca-certificates (20141019+deb8u3) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpng12-0:amd64 (1.2.50-2+deb8u3) ... Purging configuration files for libpng12-0:amd64 (1.2.50-2+deb8u3) ... dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed Removing libp11-kit0:amd64 (0.20.7-1) ... Purging configuration files for libp11-kit0:amd64 (0.20.7-1) ... Removing apache2-bin (2.4.10-10+deb8u12) ... Purging configuration files for apache2-bin (2.4.10-10+deb8u12) ... dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed Removing libxml-sax-perl (0.99+dfsg-2) ... Purging configuration files for libxml-sax-perl (0.99+dfsg-2) ... Removing libxcb1:amd64 (1.10-3+b1) ... Purging configuration files for libxcb1:amd64 (1.10-3+b1) ... dpkg: warning: ignoring request to remove libcgi-session-perl which isn't installed dpkg: warning: ignoring request to remove apache2-utils which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libjs-prototype which isn't installed Removing libx11-6:amd64 (2:1.6.2-3+deb8u1) ... Purging configuration files for libx11-6:amd64 (2:1.6.2-3+deb8u1) ... dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libvm-ec2-perl which isn't installed dpkg: warning: ignoring request to remove libjpeg8 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libjs-scriptaculous which isn't installed dpkg: warning: ignoring request to remove libswitch-perl which isn't installed Removing libgmp10:amd64 (2:6.0.0+dfsg-6) ... Purging configuration files for libgmp10:amd64 (2:6.0.0+dfsg-6) ... dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed Removing libgd3:amd64 (2.1.0-5+deb8u11) ... Purging configuration files for libgd3:amd64 (2.1.0-5+deb8u11) ... dpkg: warning: ignoring request to remove libanyevent-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-cachedns-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed Removing libxdmcp6:amd64 (1:1.1.1-1+b1) ... Purging configuration files for libxdmcp6:amd64 (1:1.1.1-1+b1) ... dpkg: warning: ignoring request to remove libgd-perl which isn't installed Removing libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Purging configuration files for libgnutls-deb0-28:amd64 (3.3.8-6+deb8u7) ... Removing mime-support (3.58) ... Purging configuration files for mime-support (3.58) ... Removing libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Purging configuration files for libxml2:amd64 (2.9.1+dfsg1-5+deb8u6) ... Removing openssl (1.0.1t-1+deb8u8) ... Purging configuration files for openssl (1.0.1t-1+deb8u8) ... dpkg: warning: ignoring request to remove libanyevent-http-perl which isn't installed Removing fontconfig-config (2.11.0-6.3+deb8u1) ... Purging configuration files for fontconfig-config (2.11.0-6.3+deb8u1) ... dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed Removing libfreetype6:amd64 (2.5.2-3+deb8u2) ... Purging configuration files for libfreetype6:amd64 (2.5.2-3+deb8u2) ... dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed Removing libapr1:amd64 (1.5.1-3) ... Purging configuration files for libapr1:amd64 (1.5.1-3) ... dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed Removing libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... Purging configuration files for libfontconfig1:amd64 (2.11.0-6.3+deb8u1) ... dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed Removing libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Purging configuration files for libxpm4:amd64 (1:3.5.12-0+deb8u1) ... Removing libnettle4:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libnettle4:amd64 (2.7.1-5+deb8u2) ... dpkg: warning: ignoring request to remove bioperl which isn't installed Removing libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... Purging configuration files for libsqlite3-0:amd64 (3.8.7.1-1+deb8u2) ... dpkg: warning: ignoring request to remove libclass-isa-perl which isn't installed dpkg: warning: ignoring request to remove perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed Removing netbase (5.3) ... Purging configuration files for netbase (5.3) ... dpkg: warning: ignoring request to remove libjson-perl which isn't installed Removing liblua5.1-0:amd64 (5.1.5-7.1) ... Purging configuration files for liblua5.1-0:amd64 (5.1.5-7.1) ... dpkg: warning: ignoring request to remove apache2-data which isn't installed Removing libdb5.1:amd64 (5.1.29-5) ... Purging configuration files for libdb5.1:amd64 (5.1.29-5) ... Removing libtasn1-6:amd64 (4.2-3+deb8u3) ... Purging configuration files for libtasn1-6:amd64 (4.2-3+deb8u3) ... dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed Removing libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Purging configuration files for libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove ttf-dejavu-core which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed Removing libffi6:amd64 (3.1-2+deb8u1) ... Purging configuration files for libffi6:amd64 (3.1-2+deb8u1) ... dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed Removing libjpeg62-turbo:amd64 (1:1.3.1-12) ... Purging configuration files for libjpeg62-turbo:amd64 (1:1.3.1-12) ... dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed Removing libaprutil1:amd64 (1.5.4-1) ... Purging configuration files for libaprutil1:amd64 (1.5.4-1) ... Removing libvpx1:amd64 (1.3.0-3+deb8u1) ... Purging configuration files for libvpx1:amd64 (1.3.0-3+deb8u1) ... Removing perl-modules (5.20.2-3+deb8u11) ... Purging configuration files for perl-modules (5.20.2-3+deb8u11) ... Removing libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... Purging configuration files for libldap-2.4-2:amd64 (2.4.40+dfsg-1+deb8u4) ... dpkg: warning: ignoring request to remove sqlite3 which isn't installed dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed Removing libjbig0:amd64 (2.1-3.1) ... Purging configuration files for libjbig0:amd64 (2.1-3.1) ... dpkg: warning: ignoring request to remove libstring-approx-perl which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Removing libexpat1:amd64 (2.1.0-6+deb8u4) ... Purging configuration files for libexpat1:amd64 (2.1.0-6+deb8u4) ... Removing libxau6:amd64 (1:1.0.8-1) ... Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed Removing libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... Purging configuration files for libsasl2-2:amd64 (2.1.26.dfsg1-13+deb8u1) ... dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libcommon-sense-perl which isn't installed Removing libhogweed2:amd64 (2.7.1-5+deb8u2) ... Purging configuration files for libhogweed2:amd64 (2.7.1-5+deb8u2) ... 2m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg', '--purge', 'libnet-ssleay-perl', 'fonts-dejavu-core', 'libdbi-perl', 'libaprutil1-dbd-sqlite3:amd64', 'libtiff5:amd64', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'apache2', 'libbio-graphics-perl', 'gbrowse', 'libio-html-perl', 'libtimedate-perl', 'ca-certificates', 'libpng12-0:amd64', 'libfile-listing-perl', 'libp11-kit0:amd64', 'apache2-bin', 'libxml-namespacesupport-perl', 'libxml-sax-perl', 'libxcb1:amd64', 'libcgi-session-perl', 'apache2-utils', 'libio-socket-ssl-perl', 'libjs-prototype', 'libx11-6:amd64', 'libbio-perl-perl', 'libvm-ec2-perl', 'libjpeg8:amd64', 'libwww-perl', 'libjs-scriptaculous', 'libswitch-perl', 'libgmp10:amd64', 'libxml-sax-base-perl', 'libgd3:amd64', 'libanyevent-perl', 'libdata-stag-perl', 'libanyevent-cachedns-perl', 'libhtml-parser-perl', 'libhttp-message-perl', 'libxdmcp6:amd64', 'libgd-perl', 'libgnutls-deb0-28:amd64', 'mime-support', 'libxml2:amd64', 'openssl', 'libanyevent-http-perl', 'fontconfig-config', 'libhtml-tagset-perl', 'libfreetype6:amd64', 'libencode-locale-perl', 'libapr1:amd64', 'libdbd-sqlite3-perl', 'libfontconfig1:amd64', 'libxml-simple-perl', 'libxpm4:amd64', 'libnettle4:amd64', 'bioperl', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'perl', 'libhttp-daemon-perl', 'netbase', 'libjson-perl', 'liblua5.1-0:amd64', 'apache2-data', 'libdb5.1:amd64', 'libtasn1-6:amd64', 'libhttp-cookies-perl', 'libaprutil1-ldap:amd64', 'libgd2-xpm:amd64', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libxml-libxml-perl', 'libffi6:amd64', 'libwww-robotrules-perl', 'libjpeg62-turbo:amd64', 'libio-string-perl', 'libx11-data', 'libhttp-negotiate-perl', 'libaprutil1:amd64', 'libvpx1:amd64', 'perl-modules', 'libldap-2.4-2:amd64', 'sqlite3', 'libterm-readkey-perl', 'libnet-http-perl', 'liburi-perl', 'libstatistics-descriptive-perl', 'libjbig0:amd64', 'libstring-approx-perl', 'libsasl2-modules-db:amd64', 'libexpat1:amd64', 'libxau6:amd64', 'liblwp-protocol-https-perl', 'liblist-moreutils-perl', 'libsasl2-2:amd64', 'libhtml-tree-perl', 'libhttp-date-perl', 'libcommon-sense-perl', 'libhogweed2:amd64'] 2m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg', '--purge', 'gbrowse-calign'] 2m11.4s DUMP: dpkg: warning: ignoring request to remove gbrowse-calign which isn't installed 2m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg', '--purge', 'gbrowse-calign'] 2m11.4s INFO: Running scripts post_purge 2m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_purge_exceptions'] 2m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_purge_exceptions'] 2m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg', '--purge', '--pending'] 2m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg', '--purge', '--pending'] 2m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg', '--remove', '--pending'] 2m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg', '--remove', '--pending'] 2m11.5s INFO: Running scripts post_test 2m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_test_exceptions'] 2m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'tmp/scripts/post_test_exceptions'] 2m11.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 2m12.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 2m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg-divert', '--list'] 2m12.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'dpkg-divert', '--list'] 2m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', 'clean'] 2m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpupEKjd', 'apt-get', 'clean'] 2m13.0s DEBUG: Recording chroot state 2m16.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpupEKjd/run/shm'] 2m16.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpupEKjd/run/shm'] 2m16.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/console'] 2m16.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/console'] 2m16.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/ptmx'] 2m17.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/ptmx'] 2m17.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/pts'] 2m17.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpupEKjd/dev/pts'] 2m17.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpupEKjd/proc'] 2m17.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpupEKjd/proc'] 2m17.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 2m17.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpupEKjd'] 2m17.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpupEKjd 2m17.3s INFO: PASS: Upgrading between Debian distributions. 2m17.3s INFO: PASS: All tests. 2m17.3s INFO: piuparts run ends. ret=0 End: 2018-12-15 09:22:08 UTC