Start: 2018-03-07 07:06:06 UTC [wheezy] Package: altree Version: 1.2.1-1 Installed-Size: 541 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: alphy, libcutils-perl Provides: alphy, libcutils-perl Depends: libc6 (>= 2.2.5), perl (>= 5.14.2-11), perlapi-5.14.2, libmath-tamuanova-perl, libpdl-stats-perl Suggests: altree-examples Conflicts: alphy, libcutils-perl Description: program to perform phylogeny-based association and localization analysis Homepage: http://claire.bardel.free.fr/software.html Description-md5: b6b21ff883122e1527c5ccc7bb5583bd Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::program, role::shared-lib, scope::utility, use::analysing, use::comparing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/a/altree/altree_1.2.1-1_amd64.deb Size: 326886 MD5sum: 8bb4761b0bb5ae41a2c282e5cc1c648f SHA1: c8884ee5a217e50db75886312518ad915f8cdab2 SHA256: 894f4b918a112e89963a453d3521de72045a762af160550f432191faf85f0200 [wheezy-lts] Package: altree Version: 1.2.1-1 Installed-Size: 541 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: alphy, libcutils-perl Provides: alphy, libcutils-perl Depends: libc6 (>= 2.2.5), perl (>= 5.14.2-11), perlapi-5.14.2, libmath-tamuanova-perl, libpdl-stats-perl Suggests: altree-examples Conflicts: alphy, libcutils-perl Description: program to perform phylogeny-based association and localization analysis Homepage: http://claire.bardel.free.fr/software.html Description-md5: b6b21ff883122e1527c5ccc7bb5583bd Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::program, role::shared-lib, scope::utility, use::analysing, use::comparing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/a/altree/altree_1.2.1-1_amd64.deb Size: 326886 MD5sum: 8bb4761b0bb5ae41a2c282e5cc1c648f SHA1: c8884ee5a217e50db75886312518ad915f8cdab2 SHA256: 894f4b918a112e89963a453d3521de72045a762af160550f432191faf85f0200 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt altree=1.2.1-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.84~201801121524~0.83-4-g6e16ed9a starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt altree=1.2.1-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-6-amd64 #1 SMP Debian 4.9.82-1+deb9u3 (2018-03-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp1z84kn 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp1z84kn 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1z84kn', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1z84kn', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1z84kn/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1z84kn/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1z84kn/run/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1z84kn/run/shm'] 0m1.7s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp1z84kn/tmp/scripts/ 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmp1z84kn/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', 'update'] 0m3.4s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Reading package lists... 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', 'update'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.8s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.8s INFO: Running scripts post_setup 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_dummy_users'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_dummy_users'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_forbid_home'] 0m4.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_forbid_home'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_minimize'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_minimize'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m5.3s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 335 kB of archives. After this operation, 1327 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 335 kB in 0s (16.9 MB/s) Selecting previously unselected package adduser. (Reading database ... 6639 files and directories currently installed.) Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up adduser (3.113+nmu3) ... Setting up ucf (3.0025+nmu3) ... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_zz_backports'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_setup_zz_backports'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m5.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m6.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m6.3s INFO: Running scripts is_testable 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/is_testable_uninstallable'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/is_testable_uninstallable'] 0m6.3s INFO: Running scripts pre_test 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_test_exceptions'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_test_exceptions'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_test_root_password'] 0m6.3s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_test_root_password'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'show', 'altree'] 0m6.3s DUMP: Package: altree Version: 1.2.1-1 Installed-Size: 541 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: alphy, libcutils-perl Provides: alphy, libcutils-perl Depends: libc6 (>= 2.2.5), perl (>= 5.14.2-11), perlapi-5.14.2, libmath-tamuanova-perl, libpdl-stats-perl Suggests: altree-examples Conflicts: alphy, libcutils-perl Description-en: program to perform phylogeny-based association and localization analysis ALTree was designed to perform association detection and localization of susceptibility sites using haplotype phylogenetic trees: first, it allows the detection of an association between a candidate gene and a disease, and second, it enables to make hypothesis about the susceptibility loci. Homepage: http://claire.bardel.free.fr/software.html Description-md5: b6b21ff883122e1527c5ccc7bb5583bd Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::program, role::shared-lib, scope::utility, use::analysing, use::comparing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/a/altree/altree_1.2.1-1_amd64.deb Size: 326886 MD5sum: 8bb4761b0bb5ae41a2c282e5cc1c648f SHA1: c8884ee5a217e50db75886312518ad915f8cdab2 SHA256: 894f4b918a112e89963a453d3521de72045a762af160550f432191faf85f0200 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'show', 'altree'] 0m6.3s INFO: apt-cache knows about the following packages: altree 0m6.3s INFO: Running scripts pre_install 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_database-server'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_database-server'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_exceptions'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_exceptions'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_extras'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_extras'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'policy'] 0m6.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'policy'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'policy', 'altree'] 0m6.4s DUMP: altree: Installed: (none) Candidate: 1.2.1-1 Version table: 1.2.1-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'policy', 'altree'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', '-y', 'install', 'altree'] 0m13.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: fftw2 fontconfig-config freeglut3 libblas3 libclass-isa-perl libcsiro0 libdrm2 libexpat1 libfontconfig1 libfreetype6 libgd2-xpm libgdbm3 libgfortran3 libgl1-mesa-glx libglapi-mesa libglu1-mesa libgsl0ldbl libhdf4-0-alt libibverbs1 libjpeg8 libltdl7 libmath-tamuanova-perl libnuma1 libopengl-perl libopenmpi1.3 libpdl-stats-perl libplplot11 libpng12-0 libproj0 libqhull5 libqsastime0 libquadmath0 libswitch-perl libtamuanova-0.2 libterm-readkey-perl libtorque2 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-glx0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxpm4 libxxf86vm1 pdl perl perl-modules proj-data ttf-dejavu-core Suggested packages: altree-examples fftw-dev mpi-defaults-bin libgd-tools gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html libhdf4-doc libhdf4-alt-dev hdf4-tools libnetcdf4 plplot11-driver-xwin plplot11-driver-gd plplot11-driver-cairo plplot11-driver-qt plplot11-driver-wxwidgets plplot-tcl proj-bin libpgplot-perl netpbm imagemagick libastro-fits-header-perl libinline-perl libplplot-dev doc-base libextutils-f77-perl libdevel-repl-perl perl-doc make libpod-plainer-perl Recommended packages: libgl1-mesa-dri libterm-readline-gnu-perl libterm-readline-perl-perl netbase The following NEW packages will be installed: altree fftw2 fontconfig-config freeglut3 libblas3 libclass-isa-perl libcsiro0 libdrm2 libexpat1 libfontconfig1 libfreetype6 libgd2-xpm libgdbm3 libgfortran3 libgl1-mesa-glx libglapi-mesa libglu1-mesa libgsl0ldbl libhdf4-0-alt libibverbs1 libjpeg8 libltdl7 libmath-tamuanova-perl libnuma1 libopengl-perl libopenmpi1.3 libpdl-stats-perl libplplot11 libpng12-0 libproj0 libqhull5 libqsastime0 libquadmath0 libswitch-perl libtamuanova-0.2 libterm-readkey-perl libtorque2 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-glx0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxpm4 libxxf86vm1 pdl perl perl-modules proj-data ttf-dejavu-core 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. Need to get 28.2 MB of archives. After this operation, 82.8 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main libgdbm3 amd64 1.8.3-11 [46.9 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main libdrm2 amd64 2.4.40-1~deb7u2 [459 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libglapi-mesa amd64 8.0.5-4+deb7u2 [46.8 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb1 amd64 1.8.1-2+deb7u1 [50.2 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-data all 2:1.5.0-1+deb7u2 [194 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-6 amd64 2:1.5.0-1+deb7u2 [901 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-xcb1 amd64 2:1.5.0-1+deb7u2 [139 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb-glx0 amd64 1.8.1-2+deb7u1 [32.2 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libxfixes3 amd64 1:5.0-4+deb7u1 [21.3 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libxdamage1 amd64 1:1.1.3-2 [14.3 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libxext6 amd64 2:1.3.1-2+deb7u1 [54.8 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main libxxf86vm1 amd64 1:1.1.2-1+deb7u1 [19.5 kB] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main libgl1-mesa-glx amd64 8.0.5-4+deb7u2 [134 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main libxi6 amd64 2:1.6.1-1+deb7u1 [75.7 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main freeglut3 amd64 2.6.0-4 [141 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main libfreetype6 amd64 2.4.9-1.1+deb7u3 [452 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main ttf-dejavu-core all 2.33-3 [1021 kB] Get:21 http://mirror-ubc.debian.org/debian/ wheezy/main fontconfig-config all 2.9.0-7.1 [233 kB] Get:22 http://mirror-ubc.debian.org/debian/ wheezy/main libfontconfig1 amd64 2.9.0-7.1 [300 kB] Get:23 http://mirror-ubc.debian.org/debian/ wheezy/main libjpeg8 amd64 8d-1+deb7u1 [138 kB] Get:24 http://mirror-ubc.debian.org/debian/ wheezy/main libpng12-0 amd64 1.2.49-1+deb7u2 [191 kB] Get:25 http://mirror-ubc.debian.org/debian/ wheezy/main libxpm4 amd64 1:3.5.10-1 [49.4 kB] Get:26 http://mirror-ubc.debian.org/debian/ wheezy/main libgd2-xpm amd64 2.0.36~rc1~dfsg-6.1+deb7u2 [234 kB] Get:27 http://mirror-ubc.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:28 http://mirror-ubc.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:29 http://mirror-ubc.debian.org/debian/ wheezy/main libglu1-mesa amd64 8.0.5-4+deb7u2 [191 kB] Get:30 http://mirror-ubc.debian.org/debian/ wheezy/main libltdl7 amd64 2.4.2-1.1 [352 kB] Get:31 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:32 http://mirror-ubc.debian.org/debian/ wheezy/main perl-modules all 5.14.2-21+deb7u3 [3444 kB] Get:33 http://mirror-ubc.debian.org/debian/ wheezy/main perl amd64 5.14.2-21+deb7u3 [4429 kB] Get:34 http://mirror-ubc.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:35 http://mirror-ubc.debian.org/debian/ wheezy/main libblas3 amd64 1.2.20110419-5 [293 kB] Get:36 http://mirror-ubc.debian.org/debian/ wheezy/main libgsl0ldbl amd64 1.15+dfsg.2-2 [1132 kB] Get:37 http://mirror-ubc.debian.org/debian/ wheezy/main libtamuanova-0.2 amd64 0.2-2 [7834 B] Get:38 http://mirror-ubc.debian.org/debian/ wheezy/main libmath-tamuanova-perl amd64 1.0.2-1 [15.7 kB] Get:39 http://mirror-ubc.debian.org/debian/ wheezy/main libterm-readkey-perl amd64 2.30-4+b2 [32.2 kB] Get:40 http://mirror-ubc.debian.org/debian/ wheezy/main libibverbs1 amd64 1.1.6-1 [35.3 kB] Get:41 http://mirror-ubc.debian.org/debian/ wheezy/main libnuma1 amd64 2.0.8~rc4-1 [33.7 kB] Get:42 http://mirror-ubc.debian.org/debian/ wheezy/main libtorque2 amd64 2.4.16+dfsg-1+deb7u4 [121 kB] Get:43 http://mirror-ubc.debian.org/debian/ wheezy/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB] Get:44 http://mirror-ubc.debian.org/debian/ wheezy/main fftw2 amd64 2.1.5-1 [283 kB] Get:45 http://mirror-ubc.debian.org/debian/ wheezy/main libhdf4-0-alt amd64 4.2r4-13 [307 kB] Get:46 http://mirror-ubc.debian.org/debian/ wheezy/main libqhull5 amd64 2009.1-3 [163 kB] Get:47 http://mirror-ubc.debian.org/debian/ wheezy/main libcsiro0 amd64 5.9.9-5 [58.7 kB] Get:48 http://mirror-ubc.debian.org/debian/ wheezy/main libqsastime0 amd64 5.9.9-5 [40.7 kB] Get:49 http://mirror-ubc.debian.org/debian/ wheezy/main libplplot11 amd64 5.9.9-5 [505 kB] Get:50 http://mirror-ubc.debian.org/debian/ wheezy/main proj-data amd64 4.7.0-2 [2937 kB] Get:51 http://mirror-ubc.debian.org/debian/ wheezy/main libproj0 amd64 4.7.0-2 [138 kB] Get:52 http://mirror-ubc.debian.org/debian/ wheezy/main libopengl-perl amd64 0.66+dfsg-1 [490 kB] Get:53 http://mirror-ubc.debian.org/debian/ wheezy/main pdl amd64 1:2.4.11-4 [5357 kB] Get:54 http://mirror-ubc.debian.org/debian/ wheezy/main libpdl-stats-perl amd64 0.6.2-1 [437 kB] Get:55 http://mirror-ubc.debian.org/debian/ wheezy/main altree amd64 1.2.1-1 [327 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.2 MB in 1s (15.7 MB/s) Selecting previously unselected package libgdbm3:amd64. (Reading database ... 6768 files and directories currently installed.) Unpacking libgdbm3:amd64 (from .../libgdbm3_1.8.3-11_amd64.deb) ... Selecting previously unselected package libdrm2:amd64. Unpacking libdrm2:amd64 (from .../libdrm2_2.4.40-1~deb7u2_amd64.deb) ... Selecting previously unselected package libglapi-mesa:amd64. Unpacking libglapi-mesa:amd64 (from .../libglapi-mesa_8.0.5-4+deb7u2_amd64.deb) ... Selecting previously unselected package libxau6:amd64. Unpacking libxau6:amd64 (from .../libxau6_1%3a1.0.7-1_amd64.deb) ... Selecting previously unselected package libxdmcp6:amd64. Unpacking libxdmcp6:amd64 (from .../libxdmcp6_1%3a1.1.1-1_amd64.deb) ... Selecting previously unselected package libxcb1:amd64. Unpacking libxcb1:amd64 (from .../libxcb1_1.8.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1+deb7u2_all.deb) ... Selecting previously unselected package libx11-6:amd64. Unpacking libx11-6:amd64 (from .../libx11-6_2%3a1.5.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libx11-xcb1:amd64. Unpacking libx11-xcb1:amd64 (from .../libx11-xcb1_2%3a1.5.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libxcb-glx0:amd64. Unpacking libxcb-glx0:amd64 (from .../libxcb-glx0_1.8.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libxfixes3:amd64. Unpacking libxfixes3:amd64 (from .../libxfixes3_1%3a5.0-4+deb7u1_amd64.deb) ... Selecting previously unselected package libxdamage1:amd64. Unpacking libxdamage1:amd64 (from .../libxdamage1_1%3a1.1.3-2_amd64.deb) ... Selecting previously unselected package libxext6:amd64. Unpacking libxext6:amd64 (from .../libxext6_2%3a1.3.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libxxf86vm1:amd64. Unpacking libxxf86vm1:amd64 (from .../libxxf86vm1_1%3a1.1.2-1+deb7u1_amd64.deb) ... Selecting previously unselected package libgl1-mesa-glx:amd64. Unpacking libgl1-mesa-glx:amd64 (from .../libgl1-mesa-glx_8.0.5-4+deb7u2_amd64.deb) ... Selecting previously unselected package libxi6:amd64. Unpacking libxi6:amd64 (from .../libxi6_2%3a1.6.1-1+deb7u1_amd64.deb) ... Selecting previously unselected package freeglut3:amd64. Unpacking freeglut3:amd64 (from .../freeglut3_2.6.0-4_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libfreetype6:amd64. Unpacking libfreetype6:amd64 (from .../libfreetype6_2.4.9-1.1+deb7u3_amd64.deb) ... Selecting previously unselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-3_all.deb) ... Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ... Selecting previously unselected package libfontconfig1:amd64. Unpacking libfontconfig1:amd64 (from .../libfontconfig1_2.9.0-7.1_amd64.deb) ... Selecting previously unselected package libjpeg8:amd64. Unpacking libjpeg8:amd64 (from .../libjpeg8_8d-1+deb7u1_amd64.deb) ... Selecting previously unselected package libpng12-0:amd64. Unpacking libpng12-0:amd64 (from .../libpng12-0_1.2.49-1+deb7u2_amd64.deb) ... Selecting previously unselected package libxpm4:amd64. Unpacking libxpm4:amd64 (from .../libxpm4_1%3a3.5.10-1_amd64.deb) ... Selecting previously unselected package libgd2-xpm:amd64. Unpacking libgd2-xpm:amd64 (from .../libgd2-xpm_2.0.36~rc1~dfsg-6.1+deb7u2_amd64.deb) ... Selecting previously unselected package libquadmath0:amd64. Unpacking libquadmath0:amd64 (from .../libquadmath0_4.7.2-5_amd64.deb) ... Selecting previously unselected package libgfortran3:amd64. Unpacking libgfortran3:amd64 (from .../libgfortran3_4.7.2-5_amd64.deb) ... Selecting previously unselected package libglu1-mesa:amd64. Unpacking libglu1-mesa:amd64 (from .../libglu1-mesa_8.0.5-4+deb7u2_amd64.deb) ... Selecting previously unselected package libltdl7:amd64. Unpacking libltdl7:amd64 (from .../libltdl7_2.4.2-1.1_amd64.deb) ... Selecting previously unselected package libclass-isa-perl. Unpacking libclass-isa-perl (from .../libclass-isa-perl_0.36-3_all.deb) ... Selecting previously unselected package perl-modules. Unpacking perl-modules (from .../perl-modules_5.14.2-21+deb7u3_all.deb) ... Selecting previously unselected package perl. Unpacking perl (from .../perl_5.14.2-21+deb7u3_amd64.deb) ... Selecting previously unselected package libswitch-perl. Unpacking libswitch-perl (from .../libswitch-perl_2.16-2_all.deb) ... Selecting previously unselected package libblas3. Unpacking libblas3 (from .../libblas3_1.2.20110419-5_amd64.deb) ... Selecting previously unselected package libgsl0ldbl. Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.15+dfsg.2-2_amd64.deb) ... Selecting previously unselected package libtamuanova-0.2. Unpacking libtamuanova-0.2 (from .../libtamuanova-0.2_0.2-2_amd64.deb) ... Selecting previously unselected package libmath-tamuanova-perl. Unpacking libmath-tamuanova-perl (from .../libmath-tamuanova-perl_1.0.2-1_amd64.deb) ... Selecting previously unselected package libterm-readkey-perl. Unpacking libterm-readkey-perl (from .../libterm-readkey-perl_2.30-4+b2_amd64.deb) ... Selecting previously unselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.6-1_amd64.deb) ... Selecting previously unselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.8~rc4-1_amd64.deb) ... Selecting previously unselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1+deb7u4_amd64.deb) ... Selecting previously unselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.5-1_amd64.deb) ... Selecting previously unselected package fftw2. Unpacking fftw2 (from .../fftw2_2.1.5-1_amd64.deb) ... Selecting previously unselected package libhdf4-0-alt. Unpacking libhdf4-0-alt (from .../libhdf4-0-alt_4.2r4-13_amd64.deb) ... Selecting previously unselected package libqhull5. Unpacking libqhull5 (from .../libqhull5_2009.1-3_amd64.deb) ... Selecting previously unselected package libcsiro0. Unpacking libcsiro0 (from .../libcsiro0_5.9.9-5_amd64.deb) ... Selecting previously unselected package libqsastime0. Unpacking libqsastime0 (from .../libqsastime0_5.9.9-5_amd64.deb) ... Selecting previously unselected package libplplot11. Unpacking libplplot11 (from .../libplplot11_5.9.9-5_amd64.deb) ... Selecting previously unselected package proj-data. Unpacking proj-data (from .../proj-data_4.7.0-2_amd64.deb) ... Selecting previously unselected package libproj0. Unpacking libproj0 (from .../libproj0_4.7.0-2_amd64.deb) ... Selecting previously unselected package libopengl-perl. Unpacking libopengl-perl (from .../libopengl-perl_0.66+dfsg-1_amd64.deb) ... Selecting previously unselected package pdl. Unpacking pdl (from .../pdl_1%3a2.4.11-4_amd64.deb) ... Selecting previously unselected package libpdl-stats-perl. Unpacking libpdl-stats-perl (from .../libpdl-stats-perl_0.6.2-1_amd64.deb) ... Selecting previously unselected package altree. Unpacking altree (from .../altree_1.2.1-1_amd64.deb) ... Setting up libgdbm3:amd64 (1.8.3-11) ... Setting up libdrm2:amd64 (2.4.40-1~deb7u2) ... Setting up libglapi-mesa:amd64 (8.0.5-4+deb7u2) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u2) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u2) ... Setting up libx11-xcb1:amd64 (2:1.5.0-1+deb7u2) ... Setting up libxcb-glx0:amd64 (1.8.1-2+deb7u1) ... Setting up libxfixes3:amd64 (1:5.0-4+deb7u1) ... Setting up libxdamage1:amd64 (1:1.1.3-2) ... Setting up libxext6:amd64 (2:1.3.1-2+deb7u1) ... Setting up libxxf86vm1:amd64 (1:1.1.2-1+deb7u1) ... Setting up libgl1-mesa-glx:amd64 (8.0.5-4+deb7u2) ... Setting up libxi6:amd64 (2:1.6.1-1+deb7u1) ... Setting up freeglut3:amd64 (2.6.0-4) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u2) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u3) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1) ... Setting up libjpeg8:amd64 (8d-1+deb7u1) ... Setting up libpng12-0:amd64 (1.2.49-1+deb7u2) ... Setting up libxpm4:amd64 (1:3.5.10-1) ... Setting up libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Setting up libquadmath0:amd64 (4.7.2-5) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up libglu1-mesa:amd64 (8.0.5-4+deb7u2) ... Setting up libltdl7:amd64 (2.4.2-1.1) ... Setting up libclass-isa-perl (0.36-3) ... Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libgsl0ldbl (1.15+dfsg.2-2) ... Setting up libtamuanova-0.2 (0.2-2) ... Setting up libibverbs1 (1.1.6-1) ... Setting up libnuma1 (2.0.8~rc4-1) ... Setting up libtorque2 (2.4.16+dfsg-1+deb7u4) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up fftw2 (2.1.5-1) ... Setting up libhdf4-0-alt (4.2r4-13) ... Setting up libqhull5 (2009.1-3) ... Setting up libcsiro0 (5.9.9-5) ... Setting up libqsastime0 (5.9.9-5) ... Setting up libplplot11 (5.9.9-5) ... Setting up proj-data (4.7.0-2) ... Setting up libproj0 (4.7.0-2) ... Setting up libswitch-perl (2.16-2) ... Setting up perl-modules (5.14.2-21+deb7u3) ... Setting up perl (5.14.2-21+deb7u3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libmath-tamuanova-perl (1.0.2-1) ... Setting up libterm-readkey-perl (2.30-4+b2) ... Setting up libopengl-perl (0.66+dfsg-1) ... Setting up pdl (1:2.4.11-4) ... Setting up libpdl-stats-perl (0.6.2-1) ... Setting up altree (1.2.1-1) ... 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', '-y', 'install', 'altree'] 0m13.9s INFO: Running scripts post_install 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_install_exceptions'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_install_exceptions'] 0m13.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m14.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m14.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp1z84kn to wheezy-lts 0m14.4s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main deb http://security.debian.org wheezy/updates main 0m14.4s INFO: Running scripts pre_distupgrade 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_distupgrade_wheezy'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_distupgrade_wheezy'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', 'update'] 0m16.3s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Get:1 http://security.debian.org wheezy/updates Release.gpg [1601 B] Get:2 http://security.debian.org wheezy/updates Release [39.0 kB] Get:3 http://security.debian.org wheezy/updates/main amd64 Packages [613 kB] Get:4 http://security.debian.org wheezy/updates/main Translation-en [335 kB] Fetched 989 kB in 1s (953 kB/s) Reading package lists... 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', 'update'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', '-yf', 'dist-upgrade'] 0m22.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bash fontconfig-config gnupg gpgv libc-bin libc6 libdb5.1 libexpat1 libfontconfig1 libfreetype6 libgd2-xpm libx11-6 libx11-data libx11-xcb1 libxfixes3 libxi6 libxpm4 login multiarch-support passwd perl perl-base perl-modules sensible-utils tar tzdata 26 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 25.9 MB of archives. After this operation, 829 kB of additional disk space will be used. Get:1 http://security.debian.org/ wheezy/updates/main bash amd64 4.2+dfsg-0.1+deb7u4 [1499 kB] Get:2 http://security.debian.org/ wheezy/updates/main login amd64 1:4.1.5.1-1+deb7u1 [984 kB] Get:3 http://security.debian.org/ wheezy/updates/main perl amd64 5.14.2-21+deb7u5 [4434 kB] Get:4 http://security.debian.org/ wheezy/updates/main perl-base amd64 5.14.2-21+deb7u5 [1534 kB] Get:5 http://security.debian.org/ wheezy/updates/main perl-modules all 5.14.2-21+deb7u5 [3441 kB] Get:6 http://security.debian.org/ wheezy/updates/main libc-bin amd64 2.13-38+deb7u12 [1275 kB] Get:7 http://security.debian.org/ wheezy/updates/main libc6 amd64 2.13-38+deb7u12 [4226 kB] Get:8 http://security.debian.org/ wheezy/updates/main libdb5.1 amd64 5.1.29-5+deb7u1 [723 kB] Get:9 http://security.debian.org/ wheezy/updates/main tar amd64 1.26+dfsg-0.1+deb7u1 [984 kB] Get:10 http://security.debian.org/ wheezy/updates/main libexpat1 amd64 2.1.0-1+deb7u5 [139 kB] Get:11 http://security.debian.org/ wheezy/updates/main libfreetype6 amd64 2.4.9-1.1+deb7u7 [454 kB] Get:12 http://security.debian.org/ wheezy/updates/main libfontconfig1 amd64 2.9.0-7.1+deb7u1 [300 kB] Get:13 http://security.debian.org/ wheezy/updates/main fontconfig-config all 2.9.0-7.1+deb7u1 [233 kB] Get:14 http://security.debian.org/ wheezy/updates/main libx11-data all 2:1.5.0-1+deb7u4 [189 kB] Get:15 http://security.debian.org/ wheezy/updates/main libx11-6 amd64 2:1.5.0-1+deb7u4 [902 kB] Get:16 http://security.debian.org/ wheezy/updates/main libxpm4 amd64 1:3.5.10-1+deb7u1 [50.4 kB] Get:17 http://security.debian.org/ wheezy/updates/main libgd2-xpm amd64 2.0.36~rc1~dfsg-6.1+deb7u11 [236 kB] Get:18 http://security.debian.org/ wheezy/updates/main libx11-xcb1 amd64 2:1.5.0-1+deb7u4 [139 kB] Get:19 http://security.debian.org/ wheezy/updates/main libxfixes3 amd64 1:5.0-4+deb7u2 [21.6 kB] Get:20 http://security.debian.org/ wheezy/updates/main libxi6 amd64 2:1.6.1-1+deb7u3 [76.4 kB] Get:21 http://security.debian.org/ wheezy/updates/main gpgv amd64 1.4.12-7+deb7u9 [229 kB] Get:22 http://security.debian.org/ wheezy/updates/main gnupg amd64 1.4.12-7+deb7u9 [1954 kB] Get:23 http://security.debian.org/ wheezy/updates/main passwd amd64 1:4.1.5.1-1+deb7u1 [1262 kB] Get:24 http://security.debian.org/ wheezy/updates/main sensible-utils all 0.0.7+deb7u1 [9000 B] Get:25 http://security.debian.org/ wheezy/updates/main tzdata all 2018c-0+deb7u1 [496 kB] Get:26 http://security.debian.org/ wheezy/updates/main multiarch-support amd64 2.13-38+deb7u12 [152 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.9 MB in 2s (12.8 MB/s) (Reading database ... 9858 files and directories currently installed.) Preparing to replace bash 4.2+dfsg-0.1+deb7u3 (using .../bash_4.2+dfsg-0.1+deb7u4_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.2+dfsg-0.1+deb7u4) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 9858 files and directories currently installed.) Preparing to replace login 1:4.1.5.1-1 (using .../login_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.5.1-1+deb7u1) ... (Reading database ... 9858 files and directories currently installed.) Preparing to replace perl 5.14.2-21+deb7u3 (using .../perl_5.14.2-21+deb7u5_amd64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-21+deb7u3 (using .../perl-base_5.14.2-21+deb7u5_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-21+deb7u5) ... (Reading database ... 9858 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-21+deb7u3 (using .../perl-modules_5.14.2-21+deb7u5_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-38+deb7u12) ... (Reading database ... 9859 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.13-38+deb7u12) ... (Reading database ... 9859 files and directories currently installed.) Preparing to replace libdb5.1:amd64 5.1.29-5 (using .../libdb5.1_5.1.29-5+deb7u1_amd64.deb) ... Unpacking replacement libdb5.1:amd64 ... Setting up libdb5.1:amd64 (5.1.29-5+deb7u1) ... (Reading database ... 9859 files and directories currently installed.) Preparing to replace tar 1.26+dfsg-0.1 (using .../tar_1.26+dfsg-0.1+deb7u1_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.26+dfsg-0.1+deb7u1) ... (Reading database ... 9859 files and directories currently installed.) Preparing to replace libexpat1:amd64 2.1.0-1+deb7u2 (using .../libexpat1_2.1.0-1+deb7u5_amd64.deb) ... Unpacking replacement libexpat1:amd64 ... Preparing to replace libfreetype6:amd64 2.4.9-1.1+deb7u3 (using .../libfreetype6_2.4.9-1.1+deb7u7_amd64.deb) ... Unpacking replacement libfreetype6:amd64 ... Preparing to replace libfontconfig1:amd64 2.9.0-7.1 (using .../libfontconfig1_2.9.0-7.1+deb7u1_amd64.deb) ... Unpacking replacement libfontconfig1:amd64 ... Preparing to replace fontconfig-config 2.9.0-7.1 (using .../fontconfig-config_2.9.0-7.1+deb7u1_all.deb) ... Unpacking replacement fontconfig-config ... Preparing to replace libx11-data 2:1.5.0-1+deb7u2 (using .../libx11-data_2%3a1.5.0-1+deb7u4_all.deb) ... Unpacking replacement libx11-data ... Preparing to replace libx11-6:amd64 2:1.5.0-1+deb7u2 (using .../libx11-6_2%3a1.5.0-1+deb7u4_amd64.deb) ... Unpacking replacement libx11-6:amd64 ... Preparing to replace libxpm4:amd64 1:3.5.10-1 (using .../libxpm4_1%3a3.5.10-1+deb7u1_amd64.deb) ... Unpacking replacement libxpm4:amd64 ... Preparing to replace libgd2-xpm:amd64 2.0.36~rc1~dfsg-6.1+deb7u2 (using .../libgd2-xpm_2.0.36~rc1~dfsg-6.1+deb7u11_amd64.deb) ... Unpacking replacement libgd2-xpm:amd64 ... Preparing to replace libx11-xcb1:amd64 2:1.5.0-1+deb7u2 (using .../libx11-xcb1_2%3a1.5.0-1+deb7u4_amd64.deb) ... Unpacking replacement libx11-xcb1:amd64 ... Preparing to replace libxfixes3:amd64 1:5.0-4+deb7u1 (using .../libxfixes3_1%3a5.0-4+deb7u2_amd64.deb) ... Unpacking replacement libxfixes3:amd64 ... Preparing to replace libxi6:amd64 2:1.6.1-1+deb7u1 (using .../libxi6_2%3a1.6.1-1+deb7u3_amd64.deb) ... Unpacking replacement libxi6:amd64 ... Preparing to replace gpgv 1.4.12-7+deb7u7 (using .../gpgv_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.12-7+deb7u9) ... (Reading database ... 9859 files and directories currently installed.) Preparing to replace gnupg 1.4.12-7+deb7u7 (using .../gnupg_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.12-7+deb7u9) ... (Reading database ... 9859 files and directories currently installed.) Preparing to replace passwd 1:4.1.5.1-1 (using .../passwd_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.5.1-1+deb7u1) ... (Reading database ... 9859 files and directories currently installed.) Preparing to replace sensible-utils 0.0.7 (using .../sensible-utils_0.0.7+deb7u1_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.7+deb7u1) ... (Reading database ... 9859 files and directories currently installed.) Preparing to replace tzdata 2016d-0+deb7u1 (using .../tzdata_2018c-0+deb7u1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2018c-0+deb7u1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Mar 7 07:06:29 UTC 2018. Universal Time is now: Wed Mar 7 07:06:29 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 9871 files and directories currently installed.) Preparing to replace multiarch-support 2.13-38+deb7u10 (using .../multiarch-support_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-38+deb7u12) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u5) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u7) ... Setting up fontconfig-config (2.9.0-7.1+deb7u1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u4) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u4) ... Setting up libxpm4:amd64 (1:3.5.10-1+deb7u1) ... Setting up libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u11) ... Setting up libx11-xcb1:amd64 (2:1.5.0-1+deb7u4) ... Setting up libxfixes3:amd64 (1:5.0-4+deb7u2) ... Setting up libxi6:amd64 (2:1.6.1-1+deb7u3) ... Setting up perl-modules (5.14.2-21+deb7u5) ... Setting up perl (5.14.2-21+deb7u5) ... 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', '-yf', 'dist-upgrade'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m22.9s DUMP: 2b0a253bdabce4c78e0bf2073791efa8 - 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'show', 'altree'] 0m22.9s DUMP: Package: altree Version: 1.2.1-1 Installed-Size: 541 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: alphy, libcutils-perl Provides: alphy, libcutils-perl Depends: libc6 (>= 2.2.5), perl (>= 5.14.2-11), perlapi-5.14.2, libmath-tamuanova-perl, libpdl-stats-perl Suggests: altree-examples Conflicts: alphy, libcutils-perl Description-en: program to perform phylogeny-based association and localization analysis ALTree was designed to perform association detection and localization of susceptibility sites using haplotype phylogenetic trees: first, it allows the detection of an association between a candidate gene and a disease, and second, it enables to make hypothesis about the susceptibility loci. Homepage: http://claire.bardel.free.fr/software.html Description-md5: b6b21ff883122e1527c5ccc7bb5583bd Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::program, role::shared-lib, scope::utility, use::analysing, use::comparing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/a/altree/altree_1.2.1-1_amd64.deb Size: 326886 MD5sum: 8bb4761b0bb5ae41a2c282e5cc1c648f SHA1: c8884ee5a217e50db75886312518ad915f8cdab2 SHA256: 894f4b918a112e89963a453d3521de72045a762af160550f432191faf85f0200 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'show', 'altree'] 0m22.9s INFO: apt-cache knows about the following packages: altree 0m22.9s INFO: Running scripts pre_install 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_database-server'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_database-server'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_exceptions'] 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_exceptions'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_extras'] 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_extras'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'policy'] 0m23.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'policy'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'policy', 'altree'] 0m23.0s DUMP: altree: Installed: 1.2.1-1 Candidate: 1.2.1-1 Version table: *** 1.2.1-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'policy', 'altree'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', '-y', 'install', 'altree'] 0m23.2s DUMP: Reading package lists... Building dependency tree... Reading state information... altree is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', '-y', 'install', 'altree'] 0m23.2s INFO: Running scripts post_install 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_install_exceptions'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_install_exceptions'] 0m23.2s INFO: Running scripts post_distupgrade 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_distupgrade_exceptions'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_distupgrade_zz_backports'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_distupgrade_zz_backports'] 0m23.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m23.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m23.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m24.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m24.2s INFO: Running scripts pre_install 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_database-server'] 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_database-server'] 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_exceptions'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_exceptions'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_extras'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_extras'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'policy'] 0m24.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'policy'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'policy', 'altree'] 0m24.3s DUMP: altree: Installed: 1.2.1-1 Candidate: 1.2.1-1 Version table: *** 1.2.1-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-cache', 'policy', 'altree'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', '-y', 'install', 'altree=1.2.1-1'] 0m24.6s DUMP: Reading package lists... Building dependency tree... Reading state information... altree is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', '-y', 'install', 'altree=1.2.1-1'] 0m24.6s INFO: Running scripts post_install 0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_install_exceptions'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_install_exceptions'] 0m24.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m25.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.4s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed altree altree 1.2.1-1 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u4 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed fftw2 fftw2 2.1.5-1 install ok installed findutils findutils 4.4.2-4 install ok installed fontconfig-config fontconfig-config 2.9.0-7.1+deb7u1 install ok installed freeglut3:amd64 freeglut3 2.6.0-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u9 install ok installed gpgv gpgv 1.4.12-7+deb7u9 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblas3 libblas3 1.2.20110419-5 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u12 install ok installed libc6:amd64 libc6 2.13-38+deb7u12 install ok installed libclass-isa-perl libclass-isa-perl 0.36-3 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libcsiro0 libcsiro0 5.9.9-5 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5+deb7u1 install ok installed libdrm2:amd64 libdrm2 2.4.40-1~deb7u2 install ok installed libexpat1:amd64 libexpat1 2.1.0-1+deb7u5 install ok installed libfontconfig1:amd64 libfontconfig1 2.9.0-7.1+deb7u1 install ok installed libfreetype6:amd64 libfreetype6 2.4.9-1.1+deb7u7 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libgd2-xpm:amd64 libgd2-xpm 2.0.36~rc1~dfsg-6.1+deb7u11 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-11 install ok installed libgfortran3:amd64 libgfortran3 4.7.2-5 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 8.0.5-4+deb7u2 install ok installed libglapi-mesa:amd64 libglapi-mesa 8.0.5-4+deb7u2 install ok installed libglu1-mesa:amd64 libglu1-mesa 8.0.5-4+deb7u2 install ok installed libgsl0ldbl libgsl0ldbl 1.15+dfsg.2-2 install ok installed libhdf4-0-alt libhdf4-0-alt 4.2r4-13 install ok installed libibverbs1 libibverbs1 1.1.6-1 install ok installed libjpeg8:amd64 libjpeg8 8d-1+deb7u1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed libltdl7:amd64 libltdl7 2.4.2-1.1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmath-tamuanova-perl libmath-tamuanova-perl 1.0.2-1 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libnuma1 libnuma1 2.0.8~rc4-1 install ok installed libopengl-perl libopengl-perl 0.66+dfsg-1 install ok installed libopenmpi1.3 libopenmpi1.3 1.4.5-1 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libpdl-stats-perl libpdl-stats-perl 0.6.2-1 install ok installed libplplot11 libplplot11 5.9.9-5 install ok installed libpng12-0:amd64 libpng12-0 1.2.49-1+deb7u2 install ok installed libproj0 libproj0 4.7.0-2 install ok installed libqhull5 libqhull5 2009.1-3 install ok installed libqsastime0 libqsastime0 5.9.9-5 install ok installed libquadmath0:amd64 libquadmath0 4.7.2-5 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libswitch-perl libswitch-perl 2.16-2 install ok installed libtamuanova-0.2 libtamuanova-0.2 0.2-2 install ok installed libterm-readkey-perl libterm-readkey-perl 2.30-4+b2 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libtorque2 libtorque2 2.4.16+dfsg-1+deb7u4 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed libx11-6:amd64 libx11-6 2:1.5.0-1+deb7u4 install ok installed libx11-data libx11-data 2:1.5.0-1+deb7u4 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.5.0-1+deb7u4 install ok installed libxau6:amd64 libxau6 1:1.0.7-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.8.1-2+deb7u1 install ok installed libxcb1:amd64 libxcb1 1.8.1-2+deb7u1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.3-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1 install ok installed libxext6:amd64 libxext6 2:1.3.1-2+deb7u1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0-4+deb7u2 install ok installed libxi6:amd64 libxi6 2:1.6.1-1+deb7u3 install ok installed libxpm4:amd64 libxpm4 1:3.5.10-1+deb7u1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.2-1+deb7u1 install ok installed login login 1:4.1.5.1-1+deb7u1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u12 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1+deb7u1 install ok installed pdl pdl 1:2.4.11-4 install ok installed perl perl 5.14.2-21+deb7u5 install ok installed perl-base perl-base 5.14.2-21+deb7u5 install ok installed perl-modules perl-modules 5.14.2-21+deb7u5 install ok installed proj-data proj-data 4.7.0-2 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7+deb7u1 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1+deb7u1 install ok installed ttf-dejavu-core ttf-dejavu-core 2.33-3 install ok installed tzdata tzdata 2018c-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1z84kn', '-ac', '--ignore-obsolete'] 0m26.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1z84kn', '-ac', '--ignore-obsolete'] 0m26.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m26.6s DUMP: 0.15.1 0m26.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m26.6s INFO: Running adequate version 0.15.1 now. 0m26.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'altree'] 0m26.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'altree'] 0m26.7s INFO: Running scripts pre_remove 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_remove_exceptions'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/pre_remove_exceptions'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', 'remove', 'libx11-data', 'libglapi-mesa:amd64', 'libfreetype6:amd64', 'libgd2-xpm:amd64', 'libxi6:amd64', 'libgl1-mesa-glx:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libfontconfig1:amd64', 'libjpeg8:amd64', 'libproj0', 'libnuma1', 'libcsiro0', 'libclass-isa-perl', 'perl-modules', 'libswitch-perl', 'libxfixes3:amd64', 'libgdbm3:amd64', 'perl', 'libopenmpi1.3', 'libquadmath0:amd64', 'libterm-readkey-perl', 'fftw2', 'libpdl-stats-perl', 'libxcb-glx0:amd64', 'libplplot11', 'libxxf86vm1:amd64', 'libopengl-perl', 'libx11-xcb1:amd64', 'libxdamage1:amd64', 'libqsastime0', 'libxdmcp6:amd64', 'libexpat1:amd64', 'libltdl7:amd64', 'libxau6:amd64', 'libxext6:amd64', 'libtorque2', 'libpng12-0:amd64', 'libhdf4-0-alt', 'libxpm4:amd64', 'libgsl0ldbl', 'ttf-dejavu-core', 'libblas3', 'libibverbs1', 'libtamuanova-0.2', 'libxcb1:amd64', 'proj-data', 'libgfortran3:amd64', 'libdrm2:amd64', 'fontconfig-config', 'freeglut3:amd64', 'pdl', 'libmath-tamuanova-perl', 'libqhull5', 'altree'] 0m28.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: altree fftw2 fontconfig-config freeglut3 libblas3 libclass-isa-perl libcsiro0 libdrm2 libexpat1 libfontconfig1 libfreetype6 libgd2-xpm libgdbm3 libgfortran3 libgl1-mesa-glx libglapi-mesa libglu1-mesa libgsl0ldbl libhdf4-0-alt libibverbs1 libjpeg8 libltdl7 libmath-tamuanova-perl libnuma1 libopengl-perl libopenmpi1.3 libpdl-stats-perl libplplot11 libpng12-0 libproj0 libqhull5 libqsastime0 libquadmath0 libswitch-perl libtamuanova-0.2 libterm-readkey-perl libtorque2 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-glx0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxpm4 libxxf86vm1 pdl perl perl-modules proj-data ttf-dejavu-core 0 upgraded, 0 newly installed, 55 to remove and 0 not upgraded. After this operation, 83.0 MB disk space will be freed. (Reading database ... 9871 files and directories currently installed.) Removing altree ... Removing libpdl-stats-perl ... Removing pdl ... Removing fftw2 ... Removing libgd2-xpm:amd64 ... Removing libfontconfig1:amd64 ... Removing fontconfig-config ... Removing libopengl-perl ... Removing freeglut3:amd64 ... Removing libmath-tamuanova-perl ... Removing libblas3 ... Removing libterm-readkey-perl ... Removing libplplot11 ... Removing libcsiro0 ... Removing libglu1-mesa:amd64 ... Removing libgl1-mesa-glx:amd64 ... Removing libdrm2:amd64 ... Removing libexpat1:amd64 ... Removing libfreetype6:amd64 ... Removing libopenmpi1.3 ... Removing libgfortran3:amd64 ... Removing libglapi-mesa:amd64 ... Removing libtamuanova-0.2 ... Removing libgsl0ldbl ... Removing libhdf4-0-alt ... Removing libibverbs1 ... Removing libjpeg8:amd64 ... Removing libltdl7:amd64 ... Removing libnuma1 ... Removing libpng12-0:amd64 ... Removing libproj0 ... Removing libqhull5 ... Removing libqsastime0 ... Removing libquadmath0:amd64 ... Removing libtorque2 ... Removing libxpm4:amd64 ... Removing libxi6:amd64 ... Removing libxdamage1:amd64 ... Removing libxfixes3:amd64 ... Removing libx11-xcb1:amd64 ... Removing libxxf86vm1:amd64 ... Removing libxext6:amd64 ... Removing libx11-6:amd64 ... Removing libx11-data ... Removing libxcb-glx0:amd64 ... Removing libxcb1:amd64 ... Removing libxau6:amd64 ... Removing libxdmcp6:amd64 ... Removing proj-data ... Removing ttf-dejavu-core ... Removing perl ... Removing perl-modules ... Removing libswitch-perl ... Removing libclass-isa-perl ... Removing libgdbm3:amd64 ... 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', 'remove', 'libx11-data', 'libglapi-mesa:amd64', 'libfreetype6:amd64', 'libgd2-xpm:amd64', 'libxi6:amd64', 'libgl1-mesa-glx:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libfontconfig1:amd64', 'libjpeg8:amd64', 'libproj0', 'libnuma1', 'libcsiro0', 'libclass-isa-perl', 'perl-modules', 'libswitch-perl', 'libxfixes3:amd64', 'libgdbm3:amd64', 'perl', 'libopenmpi1.3', 'libquadmath0:amd64', 'libterm-readkey-perl', 'fftw2', 'libpdl-stats-perl', 'libxcb-glx0:amd64', 'libplplot11', 'libxxf86vm1:amd64', 'libopengl-perl', 'libx11-xcb1:amd64', 'libxdamage1:amd64', 'libqsastime0', 'libxdmcp6:amd64', 'libexpat1:amd64', 'libltdl7:amd64', 'libxau6:amd64', 'libxext6:amd64', 'libtorque2', 'libpng12-0:amd64', 'libhdf4-0-alt', 'libxpm4:amd64', 'libgsl0ldbl', 'ttf-dejavu-core', 'libblas3', 'libibverbs1', 'libtamuanova-0.2', 'libxcb1:amd64', 'proj-data', 'libgfortran3:amd64', 'libdrm2:amd64', 'fontconfig-config', 'freeglut3:amd64', 'pdl', 'libmath-tamuanova-perl', 'libqhull5', 'altree'] 0m28.6s INFO: Running scripts post_remove 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_remove_exceptions'] 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_remove_exceptions'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg', '--purge', 'libx11-data', 'libglapi-mesa:amd64', 'libfreetype6:amd64', 'libgd2-xpm:amd64', 'libxi6:amd64', 'libgl1-mesa-glx:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libfontconfig1:amd64', 'libjpeg8:amd64', 'libproj0', 'libnuma1', 'libcsiro0', 'libclass-isa-perl', 'perl-modules', 'libswitch-perl', 'libxfixes3:amd64', 'libgdbm3:amd64', 'perl', 'libopenmpi1.3', 'libquadmath0:amd64', 'libterm-readkey-perl', 'fftw2', 'libpdl-stats-perl', 'libxcb-glx0:amd64', 'libplplot11', 'libxxf86vm1:amd64', 'libopengl-perl', 'libx11-xcb1:amd64', 'libxdamage1:amd64', 'libqsastime0', 'libxdmcp6:amd64', 'libexpat1:amd64', 'libltdl7:amd64', 'libxau6:amd64', 'libxext6:amd64', 'libtorque2', 'libpng12-0:amd64', 'libhdf4-0-alt', 'libxpm4:amd64', 'libgsl0ldbl', 'ttf-dejavu-core', 'libblas3', 'libibverbs1', 'libtamuanova-0.2', 'libxcb1:amd64', 'proj-data', 'libgfortran3:amd64', 'libdrm2:amd64', 'fontconfig-config', 'freeglut3:amd64', 'pdl', 'libmath-tamuanova-perl', 'libqhull5'] 0m28.8s DUMP: dpkg: warning: ignoring request to remove libx11-data which isn't installed (Reading database ... 6820 files and directories currently installed.) Removing libglapi-mesa:amd64 ... Purging configuration files for libglapi-mesa:amd64 ... Removing libfreetype6:amd64 ... Purging configuration files for libfreetype6:amd64 ... Removing libgd2-xpm:amd64 ... Purging configuration files for libgd2-xpm:amd64 ... Removing libxi6:amd64 ... Purging configuration files for libxi6:amd64 ... Removing libgl1-mesa-glx:amd64 ... Purging configuration files for libgl1-mesa-glx:amd64 ... Removing libx11-6:amd64 ... Purging configuration files for libx11-6:amd64 ... Removing libglu1-mesa:amd64 ... Purging configuration files for libglu1-mesa:amd64 ... Removing libfontconfig1:amd64 ... Purging configuration files for libfontconfig1:amd64 ... dpkg: warning: ignoring request to remove libjpeg8 which isn't installed Removing libproj0 ... Purging configuration files for libproj0 ... Removing libnuma1 ... Purging configuration files for libnuma1 ... Removing libcsiro0 ... Purging configuration files for libcsiro0 ... dpkg: warning: ignoring request to remove libclass-isa-perl which isn't installed Removing perl-modules ... Purging configuration files for perl-modules ... dpkg: warning: ignoring request to remove libswitch-perl which isn't installed Removing libxfixes3:amd64 ... Purging configuration files for libxfixes3:amd64 ... Removing libgdbm3:amd64 ... Purging configuration files for libgdbm3:amd64 ... dpkg: warning: ignoring request to remove perl which isn't installed Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing libquadmath0:amd64 ... Purging configuration files for libquadmath0:amd64 ... dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed Removing fftw2 ... Purging configuration files for fftw2 ... dpkg: warning: ignoring request to remove libpdl-stats-perl which isn't installed Removing libxcb-glx0:amd64 ... Purging configuration files for libxcb-glx0:amd64 ... Removing libplplot11 ... Purging configuration files for libplplot11 ... Removing libxxf86vm1:amd64 ... Purging configuration files for libxxf86vm1:amd64 ... dpkg: warning: ignoring request to remove libopengl-perl which isn't installed Removing libx11-xcb1:amd64 ... Purging configuration files for libx11-xcb1:amd64 ... Removing libxdamage1:amd64 ... Purging configuration files for libxdamage1:amd64 ... Removing libqsastime0 ... Purging configuration files for libqsastime0 ... Removing libxdmcp6:amd64 ... Purging configuration files for libxdmcp6:amd64 ... Removing libexpat1:amd64 ... Purging configuration files for libexpat1:amd64 ... Removing libltdl7:amd64 ... Purging configuration files for libltdl7:amd64 ... Removing libxau6:amd64 ... Purging configuration files for libxau6:amd64 ... Removing libxext6:amd64 ... Purging configuration files for libxext6:amd64 ... Removing libtorque2 ... Purging configuration files for libtorque2 ... Removing libpng12-0:amd64 ... Purging configuration files for libpng12-0:amd64 ... Removing libhdf4-0-alt ... Purging configuration files for libhdf4-0-alt ... Removing libxpm4:amd64 ... Purging configuration files for libxpm4:amd64 ... Removing libgsl0ldbl ... Purging configuration files for libgsl0ldbl ... dpkg: warning: ignoring request to remove ttf-dejavu-core which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed Removing libibverbs1 ... Purging configuration files for libibverbs1 ... Removing libtamuanova-0.2 ... Purging configuration files for libtamuanova-0.2 ... Removing libxcb1:amd64 ... Purging configuration files for libxcb1:amd64 ... dpkg: warning: ignoring request to remove proj-data which isn't installed Removing libgfortran3:amd64 ... Purging configuration files for libgfortran3:amd64 ... Removing libdrm2:amd64 ... Purging configuration files for libdrm2:amd64 ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing freeglut3:amd64 ... Purging configuration files for freeglut3:amd64 ... Removing pdl ... Purging configuration files for pdl ... dpkg: warning: ignoring request to remove libmath-tamuanova-perl which isn't installed Removing libqhull5 ... Purging configuration files for libqhull5 ... 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg', '--purge', 'libx11-data', 'libglapi-mesa:amd64', 'libfreetype6:amd64', 'libgd2-xpm:amd64', 'libxi6:amd64', 'libgl1-mesa-glx:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libfontconfig1:amd64', 'libjpeg8:amd64', 'libproj0', 'libnuma1', 'libcsiro0', 'libclass-isa-perl', 'perl-modules', 'libswitch-perl', 'libxfixes3:amd64', 'libgdbm3:amd64', 'perl', 'libopenmpi1.3', 'libquadmath0:amd64', 'libterm-readkey-perl', 'fftw2', 'libpdl-stats-perl', 'libxcb-glx0:amd64', 'libplplot11', 'libxxf86vm1:amd64', 'libopengl-perl', 'libx11-xcb1:amd64', 'libxdamage1:amd64', 'libqsastime0', 'libxdmcp6:amd64', 'libexpat1:amd64', 'libltdl7:amd64', 'libxau6:amd64', 'libxext6:amd64', 'libtorque2', 'libpng12-0:amd64', 'libhdf4-0-alt', 'libxpm4:amd64', 'libgsl0ldbl', 'ttf-dejavu-core', 'libblas3', 'libibverbs1', 'libtamuanova-0.2', 'libxcb1:amd64', 'proj-data', 'libgfortran3:amd64', 'libdrm2:amd64', 'fontconfig-config', 'freeglut3:amd64', 'pdl', 'libmath-tamuanova-perl', 'libqhull5'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg', '--purge', 'altree'] 0m28.8s DUMP: dpkg: warning: ignoring request to remove altree which isn't installed 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg', '--purge', 'altree'] 0m28.8s INFO: Running scripts post_purge 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_purge_exceptions'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_purge_exceptions'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg', '--purge', '--pending'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg', '--purge', '--pending'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg', '--remove', '--pending'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg', '--remove', '--pending'] 0m28.9s INFO: Running scripts post_test 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_test_exceptions'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'tmp/scripts/post_test_exceptions'] 0m28.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m29.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg-divert', '--list'] 0m29.3s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'dpkg-divert', '--list'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', 'clean'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1z84kn', 'apt-get', 'clean'] 0m29.3s DEBUG: Recording chroot state 0m30.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1z84kn/run/shm'] 0m30.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1z84kn/run/shm'] 0m30.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/console'] 0m30.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/console'] 0m30.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/ptmx'] 0m30.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/ptmx'] 0m30.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/pts'] 0m30.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1z84kn/dev/pts'] 0m30.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1z84kn/proc'] 0m30.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1z84kn/proc'] 0m30.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m30.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1z84kn'] 0m30.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp1z84kn 0m30.6s INFO: PASS: Upgrading between Debian distributions. 0m30.6s INFO: PASS: All tests. 0m30.6s INFO: piuparts run ends. ret=0 End: 2018-03-07 07:06:37 UTC