Start: 2018-03-25 14:37:53 UTC [wheezy] Package: biomaj Version: 1.2.1-1 Installed-Size: 4066 Maintainer: Debian Med Packaging Team Architecture: all Depends: debconf (>= 0.5) | debconf-2.0, ant, ant-contrib, ant-optional, junit4, libcommons-cli-java, libcommons-codec-java, libcommons-dbcp-java (>= 1.2), libcommons-httpclient-java, libcommons-logging-java, libcommons-net2-java (>= 2.2), libcommons-pool-java (>= 1.5), libgnujaf-java, libgnumail-java, libhsqldb-java, libjcommon-java (>= 1.0), libjets3t-java, libjgoodies-forms-java (>= 1.2), libjsch-java (>= 0.1.42), liblog4j1.2-java, libmysql-java, liboro-java (>= 2.0), default-jre | java6-runtime, debconf, libregexp-java (>= 1.4), libjdom1-java (>= 1.1), libsaxonb-java (>= 0.9), perl, mysql-server Suggests: ncbi-tools-bin, blast2 Description: biological data-bank updater Homepage: http://biomaj.genouest.org Description-md5: 09323ab0c5ce6116bf73c9371697c6c0 Tag: field::biology, field::biology:bioinformatics, implemented-in::java, interface::commandline, role::program Section: science Priority: optional Filename: pool/main/b/biomaj/biomaj_1.2.1-1_all.deb Size: 3767188 MD5sum: a7af84da040af1eb5f159a0085678606 SHA1: 2dbb21e0de82d77d91ef1c9be3428fa5a0715640 SHA256: cedfe2b50a505908d796152b59be6d5638f82f16c5db8899663ef611de3d1db6 [wheezy-lts] Package: biomaj Version: 1.2.1-1 Installed-Size: 4066 Maintainer: Debian Med Packaging Team Architecture: all Depends: debconf (>= 0.5) | debconf-2.0, ant, ant-contrib, ant-optional, junit4, libcommons-cli-java, libcommons-codec-java, libcommons-dbcp-java (>= 1.2), libcommons-httpclient-java, libcommons-logging-java, libcommons-net2-java (>= 2.2), libcommons-pool-java (>= 1.5), libgnujaf-java, libgnumail-java, libhsqldb-java, libjcommon-java (>= 1.0), libjets3t-java, libjgoodies-forms-java (>= 1.2), libjsch-java (>= 0.1.42), liblog4j1.2-java, libmysql-java, liboro-java (>= 2.0), default-jre | java6-runtime, debconf, libregexp-java (>= 1.4), libjdom1-java (>= 1.1), libsaxonb-java (>= 0.9), perl, mysql-server Suggests: ncbi-tools-bin, blast2 Description: biological data-bank updater Homepage: http://biomaj.genouest.org Description-md5: 09323ab0c5ce6116bf73c9371697c6c0 Tag: field::biology, field::biology:bioinformatics, implemented-in::java, interface::commandline, role::program Section: science Priority: optional Filename: pool/main/b/biomaj/biomaj_1.2.1-1_all.deb Size: 3767188 MD5sum: a7af84da040af1eb5f159a0085678606 SHA1: 2dbb21e0de82d77d91ef1c9be3428fa5a0715640 SHA256: cedfe2b50a505908d796152b59be6d5638f82f16c5db8899663ef611de3d1db6 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt biomaj=1.2.1-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.85~201803231439~0.84-2-g0170388b starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt biomaj=1.2.1-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-6-amd64 #1 SMP Debian 4.9.82-1+deb9u3 (2018-03-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpttMO7X 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpttMO7X 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpttMO7X', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpttMO7X', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpttMO7X/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpttMO7X/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/pts'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/pts'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/ptmx'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/ptmx'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/console'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/console'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpttMO7X/run/shm'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpttMO7X/run/shm'] 0m1.3s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m1.4s DEBUG: Created policy-rc.d and chmodded it. 0m1.4s DEBUG: Created resolv.conf. 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpttMO7X/tmp/scripts/ 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmpttMO7X/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', 'update'] 0m2.9s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s INFO: Running scripts post_setup 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_forbid_home'] 0m3.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_forbid_home'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m4.4s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 335 kB of archives. After this operation, 1327 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 335 kB in 0s (27.8 MB/s) Selecting previously unselected package adduser. (Reading database ... 6639 files and directories currently installed.) Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up adduser (3.113+nmu3) ... Setting up ucf (3.0025+nmu3) ... 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m4.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 0m5.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 0m5.4s INFO: Running scripts is_testable 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/is_testable_uninstallable'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/is_testable_uninstallable'] 0m5.4s INFO: Running scripts pre_test 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_test_exceptions'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_test_exceptions'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_test_root_password'] 0m5.4s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_test_root_password'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'show', 'biomaj'] 0m5.4s DUMP: Package: biomaj Version: 1.2.1-1 Installed-Size: 4066 Maintainer: Debian Med Packaging Team Architecture: all Depends: debconf (>= 0.5) | debconf-2.0, ant, ant-contrib, ant-optional, junit4, libcommons-cli-java, libcommons-codec-java, libcommons-dbcp-java (>= 1.2), libcommons-httpclient-java, libcommons-logging-java, libcommons-net2-java (>= 2.2), libcommons-pool-java (>= 1.5), libgnujaf-java, libgnumail-java, libhsqldb-java, libjcommon-java (>= 1.0), libjets3t-java, libjgoodies-forms-java (>= 1.2), libjsch-java (>= 0.1.42), liblog4j1.2-java, libmysql-java, liboro-java (>= 2.0), default-jre | java6-runtime, debconf, libregexp-java (>= 1.4), libjdom1-java (>= 1.1), libsaxonb-java (>= 0.9), perl, mysql-server Suggests: ncbi-tools-bin, blast2 Description-en: biological data-bank updater BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily. Homepage: http://biomaj.genouest.org Description-md5: 09323ab0c5ce6116bf73c9371697c6c0 Tag: field::biology, field::biology:bioinformatics, implemented-in::java, interface::commandline, role::program Section: science Priority: optional Filename: pool/main/b/biomaj/biomaj_1.2.1-1_all.deb Size: 3767188 MD5sum: a7af84da040af1eb5f159a0085678606 SHA1: 2dbb21e0de82d77d91ef1c9be3428fa5a0715640 SHA256: cedfe2b50a505908d796152b59be6d5638f82f16c5db8899663ef611de3d1db6 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'show', 'biomaj'] 0m5.4s INFO: apt-cache knows about the following packages: biomaj 0m5.4s INFO: Running scripts pre_install 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_database-server'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_database-server'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_exceptions'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_exceptions'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'policy'] 0m5.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'policy'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'policy', 'biomaj'] 0m5.5s DUMP: biomaj: Installed: (none) Candidate: 1.2.1-1 Version table: 1.2.1-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'policy', 'biomaj'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', '-y', 'install', 'biomaj'] 0m39.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: ant ant-contrib ant-optional ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig fontconfig-config java-common junit4 libaio1 libapache-pom-java libasound2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libbackport-util-concurrent-java libcairo2 libcap2 libclass-isa-perl libcommons-cli-java libcommons-codec-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-lang-java libcommons-logging-java libcommons-net2-java libcommons-parent-java libcommons-pool-java libcups2 libdatrie1 libdbd-mysql-perl libdbi-perl libdbus-1-3 libdom4j-java libexpat1 libffi5 libflac8 libfontconfig1 libfreetype6 libgcrypt11 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif4 libglib2.0-0 libgnuinet-java libgnujaf-java libgnumail-java libgnutls26 libgpg-error0 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libhamcrest-java libhsqldb-java libice6 libjasper1 libjava-xmlbuilder-java libjaxen-java libjaxme-java libjbig0 libjcommon-java libjdom1-java libjets3t-java libjgoodies-forms-java libjpeg8 libjsch-java libjson0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblog4j1.2-java libmysql-java libmysqlclient18 libnspr4 libnss3 libogg0 liboro-java libp11-kit0 libpango1.0-0 libpcre3 libpcsclite1 libpixman-1-0 libpng12-0 libpulse0 libregexp-java libsaxonb-java libservlet2.5-java libsm6 libsndfile1 libsqlite3-0 libssl1.0.0 libswitch-perl libtasn1-3 libthai-data libthai0 libtiff4 libvorbis0a libvorbisenc2 libwrap0 libwsdl4j-java libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxom-java libxpp2-java libxpp3-java libxrandr2 libxrender1 libxtst6 mysql-client-5.5 mysql-common mysql-server mysql-server-5.5 mysql-server-core-5.5 openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib openssl perl perl-modules psmisc shared-mime-info ttf-dejavu-core tzdata-java x11-common Suggested packages: default-jdk java-compiler java-sdk ant-gcj ant-doc libbsf-java libxalan2-java libjaxp1.3-java junit jython antlr libbcel-java libjdepend-java libcommons-net-java javacc ant-optional-gcj ncbi-tools-bin blast2 equivs libasound2-plugins libaxis-java-doc libbackport-util-concurrent-java-doc libcommons-dbcp-java-doc libcommons-discovery-java-doc libcommons-httpclient-java-doc libcommons-lang-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java libcommons-net2-java-doc cups-common libdom4j-java-doc rng-tools libgnumail-java-doc krb5-doc krb5-user librsvg2-common gvfs java-virtual-machine libhsqldb-java-doc libhsqldb-java-gcj libjasper-runtime libjava-xmlbuilder-java-doc libjaxme-java-doc libjcommon-java-doc libjdom1-java-doc libjgoodies-forms-java-doc liblcms2-utils liblog4j1.2-java-doc libjboss-jmx-java ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp pcscd pulseaudio libsaxonb-java-doc libxerces2-java-doc libxerces2-java-gcj libxml-commons-resolver1.1-java-doc libxom-java-doc libterm-readkey-perl tinyca icedtea-plugin libnss-mdns sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei ttf-wqy-zenhei ttf-indic-fonts perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make libpod-plainer-perl Recommended packages: libgeronimo-jta-1.1-spec-java dbus libglib2.0-data hicolor-icon-theme libgtk2.0-bin libbcprov-java krb5-locales tcpd xml-core mailx libhtml-template-perl ttf-dejavu-extra icedtea-netx icedtea-6-jre-cacao icedtea-6-jre-jamvm netbase The following NEW packages will be installed: ant ant-contrib ant-optional biomaj ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig fontconfig-config java-common junit4 libaio1 libapache-pom-java libasound2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libbackport-util-concurrent-java libcairo2 libcap2 libclass-isa-perl libcommons-cli-java libcommons-codec-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-lang-java libcommons-logging-java libcommons-net2-java libcommons-parent-java libcommons-pool-java libcups2 libdatrie1 libdbd-mysql-perl libdbi-perl libdbus-1-3 libdom4j-java libexpat1 libffi5 libflac8 libfontconfig1 libfreetype6 libgcrypt11 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif4 libglib2.0-0 libgnuinet-java libgnujaf-java libgnumail-java libgnutls26 libgpg-error0 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libhamcrest-java libhsqldb-java libice6 libjasper1 libjava-xmlbuilder-java libjaxen-java libjaxme-java libjbig0 libjcommon-java libjdom1-java libjets3t-java libjgoodies-forms-java libjpeg8 libjsch-java libjson0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblog4j1.2-java libmysql-java libmysqlclient18 libnspr4 libnss3 libogg0 liboro-java libp11-kit0 libpango1.0-0 libpcre3 libpcsclite1 libpixman-1-0 libpng12-0 libpulse0 libregexp-java libsaxonb-java libservlet2.5-java libsm6 libsndfile1 libsqlite3-0 libssl1.0.0 libswitch-perl libtasn1-3 libthai-data libthai0 libtiff4 libvorbis0a libvorbisenc2 libwrap0 libwsdl4j-java libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxom-java libxpp2-java libxpp3-java libxrandr2 libxrender1 libxtst6 mysql-client-5.5 mysql-common mysql-server mysql-server-5.5 mysql-server-core-5.5 openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib openssl perl perl-modules psmisc shared-mime-info ttf-dejavu-core tzdata-java x11-common 0 upgraded, 155 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 302 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main libgdbm3 amd64 1.8.3-11 [46.9 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main libssl1.0.0 amd64 1.0.1e-2+deb7u20 [1263 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libcap2 amd64 1:2.22-1.2 [13.6 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main libgcrypt11 amd64 1.5.0-5+deb7u4 [301 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main libtasn1-3 amd64 2.13-2+deb7u2 [67.8 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libgnutls26 amd64 2.12.20-8+deb7u5 [620 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libkeyutils1 amd64 1.5.5-3+deb7u1 [8664 B] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libkrb5support0 amd64 1.10.1+dfsg-5+deb7u7 [50.5 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libk5crypto3 amd64 1.10.1+dfsg-5+deb7u7 [113 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libkrb5-3 amd64 1.10.1+dfsg-5+deb7u7 [394 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libgssapi-krb5-2 amd64 1.10.1+dfsg-5+deb7u7 [150 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main libpcre3 amd64 1:8.30-5 [242 kB] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main libsqlite3-0 amd64 3.7.13-1+deb7u2 [454 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main libwrap0 amd64 7.6.q-24 [62.4 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main libxml2 amd64 2.8.0+dfsg1-7+wheezy5 [906 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main libaio1 amd64 0.3.109-3 [9150 B] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main libasound2 amd64 1.0.25-4 [461 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main libasyncns0 amd64 0.8-4 [13.6 kB] Get:21 http://mirror-ubc.debian.org/debian/ wheezy/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:22 http://mirror-ubc.debian.org/debian/ wheezy/main libglib2.0-0 amd64 2.33.12+really2.32.4-5 [1838 kB] Get:23 http://mirror-ubc.debian.org/debian/ wheezy/main libatk1.0-data all 2.4.0-2 [240 kB] Get:24 http://mirror-ubc.debian.org/debian/ wheezy/main libatk1.0-0 amd64 2.4.0-2 [95.1 kB] Get:25 http://mirror-ubc.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:26 http://mirror-ubc.debian.org/debian/ wheezy/main libfreetype6 amd64 2.4.9-1.1+deb7u3 [452 kB] Get:27 http://mirror-ubc.debian.org/debian/ wheezy/main ttf-dejavu-core all 2.33-3 [1021 kB] Get:28 http://mirror-ubc.debian.org/debian/ wheezy/main fontconfig-config all 2.9.0-7.1 [233 kB] Get:29 http://mirror-ubc.debian.org/debian/ wheezy/main libfontconfig1 amd64 2.9.0-7.1 [300 kB] Get:30 http://mirror-ubc.debian.org/debian/ wheezy/main libpixman-1-0 amd64 0.26.0-4+deb7u2 [427 kB] Get:31 http://mirror-ubc.debian.org/debian/ wheezy/main libpng12-0 amd64 1.2.49-1+deb7u2 [191 kB] Get:32 http://mirror-ubc.debian.org/debian/ wheezy/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:33 http://mirror-ubc.debian.org/debian/ wheezy/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:34 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb1 amd64 1.8.1-2+deb7u1 [50.2 kB] Get:35 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-data all 2:1.5.0-1+deb7u2 [194 kB] Get:36 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-6 amd64 2:1.5.0-1+deb7u2 [901 kB] Get:37 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb-render0 amd64 1.8.1-2+deb7u1 [18.6 kB] Get:38 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb-shm0 amd64 1.8.1-2+deb7u1 [10.4 kB] Get:39 http://mirror-ubc.debian.org/debian/ wheezy/main libxrender1 amd64 1:0.9.7-1+deb7u2 [32.9 kB] Get:40 http://mirror-ubc.debian.org/debian/ wheezy/main libcairo2 amd64 1.12.2-3 [912 kB] Get:41 http://mirror-ubc.debian.org/debian/ wheezy/main libjpeg8 amd64 8d-1+deb7u1 [138 kB] Get:42 http://mirror-ubc.debian.org/debian/ wheezy/main libjasper1 amd64 1.900.1-13+deb7u4 [160 kB] Get:43 http://mirror-ubc.debian.org/debian/ wheezy/main libjbig0 amd64 2.0-2+deb7u1 [32.6 kB] Get:44 http://mirror-ubc.debian.org/debian/ wheezy/main libtiff4 amd64 3.9.6-11 [202 kB] Get:45 http://mirror-ubc.debian.org/debian/ wheezy/main libgdk-pixbuf2.0-common all 2.26.1-1+deb7u3 [287 kB] Get:46 http://mirror-ubc.debian.org/debian/ wheezy/main libgdk-pixbuf2.0-0 amd64 2.26.1-1+deb7u3 [160 kB] Get:47 http://mirror-ubc.debian.org/debian/ wheezy/main libgtk2.0-common all 2.24.10-2 [3081 kB] Get:48 http://mirror-ubc.debian.org/debian/ wheezy/main libavahi-common-data amd64 0.6.31-2 [135 kB] Get:49 http://mirror-ubc.debian.org/debian/ wheezy/main libavahi-common3 amd64 0.6.31-2 [54.6 kB] Get:50 http://mirror-ubc.debian.org/debian/ wheezy/main libdbus-1-3 amd64 1.6.8-1+deb7u6 [174 kB] Get:51 http://mirror-ubc.debian.org/debian/ wheezy/main libavahi-client3 amd64 0.6.31-2 [59.5 kB] Get:52 http://mirror-ubc.debian.org/debian/ wheezy/main libcups2 amd64 1.5.3-5+deb7u6 [256 kB] Get:53 http://mirror-ubc.debian.org/debian/ wheezy/main libthai-data all 0.1.18-2 [154 kB] Get:54 http://mirror-ubc.debian.org/debian/ wheezy/main libdatrie1 amd64 0.2.5-3 [28.6 kB] Get:55 http://mirror-ubc.debian.org/debian/ wheezy/main libthai0 amd64 0.1.18-2 [42.3 kB] Get:56 http://mirror-ubc.debian.org/debian/ wheezy/main libxft2 amd64 2.3.1-1 [61.0 kB] Get:57 http://mirror-ubc.debian.org/debian/ wheezy/main fontconfig amd64 2.9.0-7.1 [348 kB] Get:58 http://mirror-ubc.debian.org/debian/ wheezy/main libpango1.0-0 amd64 1.30.0-1 [461 kB] Get:59 http://mirror-ubc.debian.org/debian/ wheezy/main libxcomposite1 amd64 1:0.4.3-2 [16.6 kB] Get:60 http://mirror-ubc.debian.org/debian/ wheezy/main libxfixes3 amd64 1:5.0-4+deb7u1 [21.3 kB] Get:61 http://mirror-ubc.debian.org/debian/ wheezy/main libxcursor1 amd64 1:1.1.13-1+deb7u1 [27.1 kB] Get:62 http://mirror-ubc.debian.org/debian/ wheezy/main libxdamage1 amd64 1:1.1.3-2 [14.3 kB] Get:63 http://mirror-ubc.debian.org/debian/ wheezy/main libxext6 amd64 2:1.3.1-2+deb7u1 [54.8 kB] Get:64 http://mirror-ubc.debian.org/debian/ wheezy/main libxi6 amd64 2:1.6.1-1+deb7u1 [75.7 kB] Get:65 http://mirror-ubc.debian.org/debian/ wheezy/main libxinerama1 amd64 2:1.1.2-1+deb7u1 [16.9 kB] Get:66 http://mirror-ubc.debian.org/debian/ wheezy/main libxrandr2 amd64 2:1.3.2-2+deb7u1 [33.0 kB] Get:67 http://mirror-ubc.debian.org/debian/ wheezy/main shared-mime-info amd64 1.0-1+b1 [595 kB] Get:68 http://mirror-ubc.debian.org/debian/ wheezy/main libgtk2.0-0 amd64 2.24.10-2 [2200 kB] Get:69 http://mirror-ubc.debian.org/debian/ wheezy/main libatk-wrapper-java all 0.30.4-3 [31.2 kB] Get:70 http://mirror-ubc.debian.org/debian/ wheezy/main libatk-wrapper-java-jni amd64 0.30.4-3 [31.8 kB] Get:71 http://mirror-ubc.debian.org/debian/ wheezy/main libogg0 amd64 1.3.0-4 [20.6 kB] Get:72 http://mirror-ubc.debian.org/debian/ wheezy/main libflac8 amd64 1.2.1-6+deb7u1 [162 kB] Get:73 http://mirror-ubc.debian.org/debian/ wheezy/main x11-common all 1:7.7+3~deb7u1 [284 kB] Get:74 http://mirror-ubc.debian.org/debian/ wheezy/main libice6 amd64 2:1.0.8-2 [63.1 kB] Get:75 http://mirror-ubc.debian.org/debian/ wheezy/main liblcms2-2 amd64 2.2+git20110628-2.2+deb7u1 [144 kB] Get:76 http://mirror-ubc.debian.org/debian/ wheezy/main mysql-common all 5.5.47-0+deb7u1 [81.9 kB] Get:77 http://mirror-ubc.debian.org/debian/ wheezy/main libmysqlclient18 amd64 5.5.47-0+deb7u1 [686 kB] Get:78 http://mirror-ubc.debian.org/debian/ wheezy/main libnspr4 amd64 2:4.9.2-1+deb7u3 [140 kB] Get:79 http://mirror-ubc.debian.org/debian/ wheezy/main libnss3 amd64 2:3.14.5-1+deb7u5 [1063 kB] Get:80 http://mirror-ubc.debian.org/debian/ wheezy/main libpcsclite1 amd64 1.8.4-1+deb7u1 [57.0 kB] Get:81 http://mirror-ubc.debian.org/debian/ wheezy/main libjson0 amd64 0.10-1.2 [24.2 kB] Get:82 http://mirror-ubc.debian.org/debian/ wheezy/main libsm6 amd64 2:1.2.1-2 [34.2 kB] Get:83 http://mirror-ubc.debian.org/debian/ wheezy/main libvorbis0a amd64 1.3.2-1.3 [109 kB] Get:84 http://mirror-ubc.debian.org/debian/ wheezy/main libvorbisenc2 amd64 1.3.2-1.3 [143 kB] Get:85 http://mirror-ubc.debian.org/debian/ wheezy/main libsndfile1 amd64 1.0.25-5 [240 kB] Get:86 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-xcb1 amd64 2:1.5.0-1+deb7u2 [139 kB] Get:87 http://mirror-ubc.debian.org/debian/ wheezy/main libxtst6 amd64 2:1.2.1-1+deb7u1 [26.8 kB] Get:88 http://mirror-ubc.debian.org/debian/ wheezy/main libpulse0 amd64 2.0-6.1 [232 kB] Get:89 http://mirror-ubc.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:90 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:91 http://mirror-ubc.debian.org/debian/ wheezy/main perl-modules all 5.14.2-21+deb7u3 [3444 kB] Get:92 http://mirror-ubc.debian.org/debian/ wheezy/main perl amd64 5.14.2-21+deb7u3 [4429 kB] Get:93 http://mirror-ubc.debian.org/debian/ wheezy/main libdbi-perl amd64 1.622-1+deb7u1 [892 kB] Get:94 http://mirror-ubc.debian.org/debian/ wheezy/main libdbd-mysql-perl amd64 4.021-1+b1 [126 kB] Get:95 http://mirror-ubc.debian.org/debian/ wheezy/main mysql-client-5.5 amd64 5.5.47-0+deb7u1 [1755 kB] Get:96 http://mirror-ubc.debian.org/debian/ wheezy/main psmisc amd64 22.19-1+deb7u1 [135 kB] Get:97 http://mirror-ubc.debian.org/debian/ wheezy/main mysql-server-core-5.5 amd64 5.5.47-0+deb7u1 [3406 kB] Get:98 http://mirror-ubc.debian.org/debian/ wheezy/main mysql-server-5.5 amd64 5.5.47-0+deb7u1 [2106 kB] Get:99 http://mirror-ubc.debian.org/debian/ wheezy/main openjdk-6-jre-lib all 6b38-1.13.10-1~deb7u1 [6259 kB] Get:100 http://mirror-ubc.debian.org/debian/ wheezy/main openssl amd64 1.0.1e-2+deb7u20 [702 kB] Get:101 http://mirror-ubc.debian.org/debian/ wheezy/main ca-certificates all 20130119+deb7u1 [210 kB] Get:102 http://mirror-ubc.debian.org/debian/ wheezy/main java-common all 0.47 [66.1 kB] Get:103 http://mirror-ubc.debian.org/debian/ wheezy/main default-jre-headless amd64 1:1.6-47 [8112 B] Get:104 http://mirror-ubc.debian.org/debian/ wheezy/main ca-certificates-java all 20121112+nmu2 [14.9 kB] Get:105 http://mirror-ubc.debian.org/debian/ wheezy/main tzdata-java all 2016d-0+deb7u1 [136 kB] Get:106 http://mirror-ubc.debian.org/debian/ wheezy/main openjdk-6-jre-headless amd64 6b38-1.13.10-1~deb7u1 [32.9 MB] Get:107 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-commons-resolver1.1-java all 1.2-7 [91.9 kB] Get:108 http://mirror-ubc.debian.org/debian/ wheezy/main libxml-commons-external-java all 1.4.01-2 [245 kB] Get:109 http://mirror-ubc.debian.org/debian/ wheezy/main libxerces2-java all 2.11.0-6 [1365 kB] Get:110 http://mirror-ubc.debian.org/debian/ wheezy/main ant all 1.8.2-4 [1841 kB] Get:111 http://mirror-ubc.debian.org/debian/ wheezy/main ant-optional all 1.8.2-4 [335 kB] Get:112 http://mirror-ubc.debian.org/debian/ wheezy/main ant-contrib all 1.0~b3+svn177-5 [266 kB] Get:113 http://mirror-ubc.debian.org/debian/ wheezy/main libhamcrest-java all 1.2-2 [341 kB] Get:114 http://mirror-ubc.debian.org/debian/ wheezy/main junit4 all 4.10-3 [217 kB] Get:115 http://mirror-ubc.debian.org/debian/ wheezy/main libapache-pom-java all 10-2 [3870 B] Get:116 http://mirror-ubc.debian.org/debian/ wheezy/main libcommons-parent-java all 22-2 [6786 B] Get:117 http://mirror-ubc.debian.org/debian/ wheezy/main libcommons-lang-java all 2.6-3 [270 kB] Get:118 http://mirror-ubc.debian.org/debian/ wheezy/main libcommons-cli-java all 1.2-3 [39.2 kB] Get:119 http://mirror-ubc.debian.org/debian/ wheezy/main libcommons-codec-java all 1.6-1 [194 kB] Get:120 http://mirror-ubc.debian.org/debian/ wheezy/main libcommons-pool-java all 1.5.6-1 [94.9 kB] Get:121 http://mirror-ubc.debian.org/debian/ wheezy/main libcommons-dbcp-java all 1.4-3 [153 kB] Get:122 http://mirror-ubc.debian.org/debian/ wheezy/main libcommons-logging-java all 1.1.1-9 [113 kB] Get:123 http://mirror-ubc.debian.org/debian/ wheezy/main libcommons-httpclient-java all 3.1-10.2+deb7u2 [300 kB] Get:124 http://mirror-ubc.debian.org/debian/ wheezy/main libcommons-net2-java all 2.2-2 [193 kB] Get:125 http://mirror-ubc.debian.org/debian/ wheezy/main libgnujaf-java all 1.1.1-8 [35.5 kB] Get:126 http://mirror-ubc.debian.org/debian/ wheezy/main libgnuinet-java all 1.1.2-2 [397 kB] Get:127 http://mirror-ubc.debian.org/debian/ wheezy/main libgnumail-java all 1.1.2-7 [287 kB] Get:128 http://mirror-ubc.debian.org/debian/ wheezy/main libservlet2.5-java all 6.0.45+dfsg-1~deb7u1 [241 kB] Get:129 http://mirror-ubc.debian.org/debian/ wheezy/main libhsqldb-java all 1.8.0.10+dfsg-0+deb7u1 [932 kB] Get:130 http://mirror-ubc.debian.org/debian/ wheezy/main libjcommon-java all 1.0.16-2 [459 kB] Get:131 http://mirror-ubc.debian.org/debian/ wheezy/main libwsdl4j-java all 1.6.2-4 [141 kB] Get:132 http://mirror-ubc.debian.org/debian/ wheezy/main libcommons-discovery-java all 0.5-3 [136 kB] Get:133 http://mirror-ubc.debian.org/debian/ wheezy/main libaxis-java all 1.4-16.2+deb7u1 [1496 kB] Get:134 http://mirror-ubc.debian.org/debian/ wheezy/main libjava-xmlbuilder-java all 0.4-2 [20.2 kB] Get:135 http://mirror-ubc.debian.org/debian/ wheezy/main libjets3t-java all 0.8.1+dfsg-1 [479 kB] Get:136 http://mirror-ubc.debian.org/debian/ wheezy/main libjgoodies-forms-java all 1.3.0-2 [116 kB] Get:137 http://mirror-ubc.debian.org/debian/ wheezy/main libjsch-java all 0.1.42-2 [216 kB] Get:138 http://mirror-ubc.debian.org/debian/ wheezy/main liblog4j1.2-java all 1.2.16-3 [385 kB] Get:139 http://mirror-ubc.debian.org/debian/ wheezy/main libmysql-java all 5.1.16-2 [878 kB] Get:140 http://mirror-ubc.debian.org/debian/ wheezy/main liboro-java all 2.0.8a-8 [70.0 kB] Get:141 http://mirror-ubc.debian.org/debian/ wheezy/main libgif4 amd64 4.1.6-10+deb7u1 [42.6 kB] Get:142 http://mirror-ubc.debian.org/debian/ wheezy/main openjdk-6-jre amd64 6b38-1.13.10-1~deb7u1 [239 kB] Get:143 http://mirror-ubc.debian.org/debian/ wheezy/main default-jre amd64 1:1.6-47 [836 B] Get:144 http://mirror-ubc.debian.org/debian/ wheezy/main libregexp-java all 1.5-3 [35.5 kB] Get:145 http://mirror-ubc.debian.org/debian/ wheezy/main libjaxen-java all 1.1.3-1 [203 kB] Get:146 http://mirror-ubc.debian.org/debian/ wheezy/main libjdom1-java all 1.1.2+dfsg-2 [151 kB] Get:147 http://mirror-ubc.debian.org/debian/ wheezy/main libjaxme-java all 0.5.2+dfsg-6 [1202 kB] Get:148 http://mirror-ubc.debian.org/debian/ wheezy/main libxpp2-java all 2.1.10-7 [147 kB] Get:149 http://mirror-ubc.debian.org/debian/ wheezy/main libxpp3-java all 1.1.4c-2 [349 kB] Get:150 http://mirror-ubc.debian.org/debian/ wheezy/main libbackport-util-concurrent-java all 3.1-3 [294 kB] Get:151 http://mirror-ubc.debian.org/debian/ wheezy/main libdom4j-java all 1.6.1+dfsg.2-6 [334 kB] Get:152 http://mirror-ubc.debian.org/debian/ wheezy/main libxom-java all 1.2.1-3 [389 kB] Get:153 http://mirror-ubc.debian.org/debian/ wheezy/main libsaxonb-java all 9.1.0.8-1 [3986 kB] Get:154 http://mirror-ubc.debian.org/debian/ wheezy/main mysql-server all 5.5.47-0+deb7u1 [80.1 kB] Get:155 http://mirror-ubc.debian.org/debian/ wheezy/main biomaj all 1.2.1-1 [3767 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 105 MB in 5s (19.8 MB/s) Selecting previously unselected package libgdbm3:amd64. (Reading database ... 6768 files and directories currently installed.) Unpacking libgdbm3:amd64 (from .../libgdbm3_1.8.3-11_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package libcap2:amd64. Unpacking libcap2:amd64 (from .../libcap2_1%3a2.22-1.2_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3.1_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. Unpacking libgcrypt11:amd64 (from .../libgcrypt11_1.5.0-5+deb7u4_amd64.deb) ... Selecting previously unselected package libp11-kit0:amd64. Unpacking libp11-kit0:amd64 (from .../libp11-kit0_0.12-3_amd64.deb) ... Selecting previously unselected package libtasn1-3:amd64. Unpacking libtasn1-3:amd64 (from .../libtasn1-3_2.13-2+deb7u2_amd64.deb) ... Selecting previously unselected package libgnutls26:amd64. Unpacking libgnutls26:amd64 (from .../libgnutls26_2.12.20-8+deb7u5_amd64.deb) ... Selecting previously unselected package libkeyutils1:amd64. Unpacking libkeyutils1:amd64 (from .../libkeyutils1_1.5.5-3+deb7u1_amd64.deb) ... Selecting previously unselected package libkrb5support0:amd64. Unpacking libkrb5support0:amd64 (from .../libkrb5support0_1.10.1+dfsg-5+deb7u7_amd64.deb) ... Selecting previously unselected package libk5crypto3:amd64. Unpacking libk5crypto3:amd64 (from .../libk5crypto3_1.10.1+dfsg-5+deb7u7_amd64.deb) ... Selecting previously unselected package libkrb5-3:amd64. Unpacking libkrb5-3:amd64 (from .../libkrb5-3_1.10.1+dfsg-5+deb7u7_amd64.deb) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Unpacking libgssapi-krb5-2:amd64 (from .../libgssapi-krb5-2_1.10.1+dfsg-5+deb7u7_amd64.deb) ... Selecting previously unselected package libpcre3:amd64. Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.30-5_amd64.deb) ... Selecting previously unselected package libsqlite3-0:amd64. Unpacking libsqlite3-0:amd64 (from .../libsqlite3-0_3.7.13-1+deb7u2_amd64.deb) ... Selecting previously unselected package libwrap0:amd64. Unpacking libwrap0:amd64 (from .../libwrap0_7.6.q-24_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.8.0+dfsg1-7+wheezy5_amd64.deb) ... Selecting previously unselected package libaio1:amd64. Unpacking libaio1:amd64 (from .../libaio1_0.3.109-3_amd64.deb) ... Selecting previously unselected package libasound2:amd64. Unpacking libasound2:amd64 (from .../libasound2_1.0.25-4_amd64.deb) ... Selecting previously unselected package libasyncns0:amd64. Unpacking libasyncns0:amd64 (from .../libasyncns0_0.8-4_amd64.deb) ... Selecting previously unselected package libffi5:amd64. Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Selecting previously unselected package libglib2.0-0:amd64. Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.33.12+really2.32.4-5_amd64.deb) ... Selecting previously unselected package libatk1.0-data. Unpacking libatk1.0-data (from .../libatk1.0-data_2.4.0-2_all.deb) ... Selecting previously unselected package libatk1.0-0:amd64. Unpacking libatk1.0-0:amd64 (from .../libatk1.0-0_2.4.0-2_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libfreetype6:amd64. Unpacking libfreetype6:amd64 (from .../libfreetype6_2.4.9-1.1+deb7u3_amd64.deb) ... Selecting previously unselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-3_all.deb) ... Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ... Selecting previously unselected package libfontconfig1:amd64. Unpacking libfontconfig1:amd64 (from .../libfontconfig1_2.9.0-7.1_amd64.deb) ... Selecting previously unselected package libpixman-1-0:amd64. Unpacking libpixman-1-0:amd64 (from .../libpixman-1-0_0.26.0-4+deb7u2_amd64.deb) ... Selecting previously unselected package libpng12-0:amd64. Unpacking libpng12-0:amd64 (from .../libpng12-0_1.2.49-1+deb7u2_amd64.deb) ... Selecting previously unselected package libxau6:amd64. Unpacking libxau6:amd64 (from .../libxau6_1%3a1.0.7-1_amd64.deb) ... Selecting previously unselected package libxdmcp6:amd64. Unpacking libxdmcp6:amd64 (from .../libxdmcp6_1%3a1.1.1-1_amd64.deb) ... Selecting previously unselected package libxcb1:amd64. Unpacking libxcb1:amd64 (from .../libxcb1_1.8.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1+deb7u2_all.deb) ... Selecting previously unselected package libx11-6:amd64. Unpacking libx11-6:amd64 (from .../libx11-6_2%3a1.5.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libxcb-render0:amd64. Unpacking libxcb-render0:amd64 (from .../libxcb-render0_1.8.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libxcb-shm0:amd64. Unpacking libxcb-shm0:amd64 (from .../libxcb-shm0_1.8.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libxrender1:amd64. Unpacking libxrender1:amd64 (from .../libxrender1_1%3a0.9.7-1+deb7u2_amd64.deb) ... Selecting previously unselected package libcairo2:amd64. Unpacking libcairo2:amd64 (from .../libcairo2_1.12.2-3_amd64.deb) ... Selecting previously unselected package libjpeg8:amd64. Unpacking libjpeg8:amd64 (from .../libjpeg8_8d-1+deb7u1_amd64.deb) ... Selecting previously unselected package libjasper1:amd64. Unpacking libjasper1:amd64 (from .../libjasper1_1.900.1-13+deb7u4_amd64.deb) ... Selecting previously unselected package libjbig0:amd64. Unpacking libjbig0:amd64 (from .../libjbig0_2.0-2+deb7u1_amd64.deb) ... Selecting previously unselected package libtiff4:amd64. Unpacking libtiff4:amd64 (from .../libtiff4_3.9.6-11_amd64.deb) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Unpacking libgdk-pixbuf2.0-common (from .../libgdk-pixbuf2.0-common_2.26.1-1+deb7u3_all.deb) ... Selecting previously unselected package libgdk-pixbuf2.0-0:amd64. Unpacking libgdk-pixbuf2.0-0:amd64 (from .../libgdk-pixbuf2.0-0_2.26.1-1+deb7u3_amd64.deb) ... Selecting previously unselected package libgtk2.0-common. Unpacking libgtk2.0-common (from .../libgtk2.0-common_2.24.10-2_all.deb) ... Selecting previously unselected package libavahi-common-data:amd64. Unpacking libavahi-common-data:amd64 (from .../libavahi-common-data_0.6.31-2_amd64.deb) ... Selecting previously unselected package libavahi-common3:amd64. Unpacking libavahi-common3:amd64 (from .../libavahi-common3_0.6.31-2_amd64.deb) ... Selecting previously unselected package libdbus-1-3:amd64. Unpacking libdbus-1-3:amd64 (from .../libdbus-1-3_1.6.8-1+deb7u6_amd64.deb) ... Selecting previously unselected package libavahi-client3:amd64. Unpacking libavahi-client3:amd64 (from .../libavahi-client3_0.6.31-2_amd64.deb) ... Selecting previously unselected package libcups2:amd64. Unpacking libcups2:amd64 (from .../libcups2_1.5.3-5+deb7u6_amd64.deb) ... Selecting previously unselected package libthai-data. Unpacking libthai-data (from .../libthai-data_0.1.18-2_all.deb) ... Selecting previously unselected package libdatrie1:amd64. Unpacking libdatrie1:amd64 (from .../libdatrie1_0.2.5-3_amd64.deb) ... Selecting previously unselected package libthai0:amd64. Unpacking libthai0:amd64 (from .../libthai0_0.1.18-2_amd64.deb) ... Selecting previously unselected package libxft2:amd64. Unpacking libxft2:amd64 (from .../libxft2_2.3.1-1_amd64.deb) ... Selecting previously unselected package fontconfig. Unpacking fontconfig (from .../fontconfig_2.9.0-7.1_amd64.deb) ... Selecting previously unselected package libpango1.0-0:amd64. Unpacking libpango1.0-0:amd64 (from .../libpango1.0-0_1.30.0-1_amd64.deb) ... Selecting previously unselected package libxcomposite1:amd64. Unpacking libxcomposite1:amd64 (from .../libxcomposite1_1%3a0.4.3-2_amd64.deb) ... Selecting previously unselected package libxfixes3:amd64. Unpacking libxfixes3:amd64 (from .../libxfixes3_1%3a5.0-4+deb7u1_amd64.deb) ... Selecting previously unselected package libxcursor1:amd64. Unpacking libxcursor1:amd64 (from .../libxcursor1_1%3a1.1.13-1+deb7u1_amd64.deb) ... Selecting previously unselected package libxdamage1:amd64. Unpacking libxdamage1:amd64 (from .../libxdamage1_1%3a1.1.3-2_amd64.deb) ... Selecting previously unselected package libxext6:amd64. Unpacking libxext6:amd64 (from .../libxext6_2%3a1.3.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libxi6:amd64. Unpacking libxi6:amd64 (from .../libxi6_2%3a1.6.1-1+deb7u1_amd64.deb) ... Selecting previously unselected package libxinerama1:amd64. Unpacking libxinerama1:amd64 (from .../libxinerama1_2%3a1.1.2-1+deb7u1_amd64.deb) ... Selecting previously unselected package libxrandr2:amd64. Unpacking libxrandr2:amd64 (from .../libxrandr2_2%3a1.3.2-2+deb7u1_amd64.deb) ... Selecting previously unselected package shared-mime-info. Unpacking shared-mime-info (from .../shared-mime-info_1.0-1+b1_amd64.deb) ... Selecting previously unselected package libgtk2.0-0:amd64. Unpacking libgtk2.0-0:amd64 (from .../libgtk2.0-0_2.24.10-2_amd64.deb) ... Selecting previously unselected package libatk-wrapper-java. Unpacking libatk-wrapper-java (from .../libatk-wrapper-java_0.30.4-3_all.deb) ... Selecting previously unselected package libatk-wrapper-java-jni:amd64. Unpacking libatk-wrapper-java-jni:amd64 (from .../libatk-wrapper-java-jni_0.30.4-3_amd64.deb) ... Selecting previously unselected package libogg0:amd64. Unpacking libogg0:amd64 (from .../libogg0_1.3.0-4_amd64.deb) ... Selecting previously unselected package libflac8:amd64. Unpacking libflac8:amd64 (from .../libflac8_1.2.1-6+deb7u1_amd64.deb) ... Selecting previously unselected package x11-common. Unpacking x11-common (from .../x11-common_1%3a7.7+3~deb7u1_all.deb) ... Selecting previously unselected package libice6:amd64. Unpacking libice6:amd64 (from .../libice6_2%3a1.0.8-2_amd64.deb) ... Selecting previously unselected package liblcms2-2:amd64. Unpacking liblcms2-2:amd64 (from .../liblcms2-2_2.2+git20110628-2.2+deb7u1_amd64.deb) ... Selecting previously unselected package mysql-common. Unpacking mysql-common (from .../mysql-common_5.5.47-0+deb7u1_all.deb) ... Selecting previously unselected package libmysqlclient18:amd64. Unpacking libmysqlclient18:amd64 (from .../libmysqlclient18_5.5.47-0+deb7u1_amd64.deb) ... Selecting previously unselected package libnspr4:amd64. Unpacking libnspr4:amd64 (from .../libnspr4_2%3a4.9.2-1+deb7u3_amd64.deb) ... Selecting previously unselected package libnss3:amd64. Unpacking libnss3:amd64 (from .../libnss3_2%3a3.14.5-1+deb7u5_amd64.deb) ... Selecting previously unselected package libpcsclite1:amd64. Unpacking libpcsclite1:amd64 (from .../libpcsclite1_1.8.4-1+deb7u1_amd64.deb) ... Selecting previously unselected package libjson0:amd64. Unpacking libjson0:amd64 (from .../libjson0_0.10-1.2_amd64.deb) ... Selecting previously unselected package libsm6:amd64. Unpacking libsm6:amd64 (from .../libsm6_2%3a1.2.1-2_amd64.deb) ... Selecting previously unselected package libvorbis0a:amd64. Unpacking libvorbis0a:amd64 (from .../libvorbis0a_1.3.2-1.3_amd64.deb) ... Selecting previously unselected package libvorbisenc2:amd64. Unpacking libvorbisenc2:amd64 (from .../libvorbisenc2_1.3.2-1.3_amd64.deb) ... Selecting previously unselected package libsndfile1:amd64. Unpacking libsndfile1:amd64 (from .../libsndfile1_1.0.25-5_amd64.deb) ... Selecting previously unselected package libx11-xcb1:amd64. Unpacking libx11-xcb1:amd64 (from .../libx11-xcb1_2%3a1.5.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libxtst6:amd64. Unpacking libxtst6:amd64 (from .../libxtst6_2%3a1.2.1-1+deb7u1_amd64.deb) ... Selecting previously unselected package libpulse0:amd64. Unpacking libpulse0:amd64 (from .../libpulse0_2.0-6.1_amd64.deb) ... Selecting previously unselected package libswitch-perl. Unpacking libswitch-perl (from .../libswitch-perl_2.16-2_all.deb) ... Selecting previously unselected package libclass-isa-perl. Unpacking libclass-isa-perl (from .../libclass-isa-perl_0.36-3_all.deb) ... Selecting previously unselected package perl-modules. Unpacking perl-modules (from .../perl-modules_5.14.2-21+deb7u3_all.deb) ... Selecting previously unselected package perl. Unpacking perl (from .../perl_5.14.2-21+deb7u3_amd64.deb) ... Selecting previously unselected package libdbi-perl. Unpacking libdbi-perl (from .../libdbi-perl_1.622-1+deb7u1_amd64.deb) ... Selecting previously unselected package libdbd-mysql-perl. Unpacking libdbd-mysql-perl (from .../libdbd-mysql-perl_4.021-1+b1_amd64.deb) ... Selecting previously unselected package mysql-client-5.5. Unpacking mysql-client-5.5 (from .../mysql-client-5.5_5.5.47-0+deb7u1_amd64.deb) ... Selecting previously unselected package psmisc. Unpacking psmisc (from .../psmisc_22.19-1+deb7u1_amd64.deb) ... Selecting previously unselected package mysql-server-core-5.5. Unpacking mysql-server-core-5.5 (from .../mysql-server-core-5.5_5.5.47-0+deb7u1_amd64.deb) ... Setting up mysql-common (5.5.47-0+deb7u1) ... Selecting previously unselected package mysql-server-5.5. (Reading database ... 10413 files and directories currently installed.) Unpacking mysql-server-5.5 (from .../mysql-server-5.5_5.5.47-0+deb7u1_amd64.deb) ... Selecting previously unselected package openjdk-6-jre-lib. Unpacking openjdk-6-jre-lib (from .../openjdk-6-jre-lib_6b38-1.13.10-1~deb7u1_all.deb) ... Selecting previously unselected package openssl. Unpacking openssl (from .../openssl_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package ca-certificates. Unpacking ca-certificates (from .../ca-certificates_20130119+deb7u1_all.deb) ... Selecting previously unselected package java-common. Unpacking java-common (from .../java-common_0.47_all.deb) ... Selecting previously unselected package default-jre-headless. Unpacking default-jre-headless (from .../default-jre-headless_1%3a1.6-47_amd64.deb) ... Selecting previously unselected package ca-certificates-java. Unpacking ca-certificates-java (from .../ca-certificates-java_20121112+nmu2_all.deb) ... Selecting previously unselected package tzdata-java. Unpacking tzdata-java (from .../tzdata-java_2016d-0+deb7u1_all.deb) ... Selecting previously unselected package openjdk-6-jre-headless:amd64. Unpacking openjdk-6-jre-headless:amd64 (from .../openjdk-6-jre-headless_6b38-1.13.10-1~deb7u1_amd64.deb) ... Selecting previously unselected package libxml-commons-resolver1.1-java. Unpacking libxml-commons-resolver1.1-java (from .../libxml-commons-resolver1.1-java_1.2-7_all.deb) ... Selecting previously unselected package libxml-commons-external-java. Unpacking libxml-commons-external-java (from .../libxml-commons-external-java_1.4.01-2_all.deb) ... Selecting previously unselected package libxerces2-java. Unpacking libxerces2-java (from .../libxerces2-java_2.11.0-6_all.deb) ... Selecting previously unselected package ant. Unpacking ant (from .../archives/ant_1.8.2-4_all.deb) ... Selecting previously unselected package ant-optional. Unpacking ant-optional (from .../ant-optional_1.8.2-4_all.deb) ... Selecting previously unselected package ant-contrib. 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Selecting previously unselected package libgnuinet-java. Unpacking libgnuinet-java (from .../libgnuinet-java_1.1.2-2_all.deb) ... Selecting previously unselected package libgnumail-java. Unpacking libgnumail-java (from .../libgnumail-java_1.1.2-7_all.deb) ... Selecting previously unselected package libservlet2.5-java. Unpacking libservlet2.5-java (from .../libservlet2.5-java_6.0.45+dfsg-1~deb7u1_all.deb) ... Selecting previously unselected package libhsqldb-java. Unpacking libhsqldb-java (from .../libhsqldb-java_1.8.0.10+dfsg-0+deb7u1_all.deb) ... Selecting previously unselected package libjcommon-java. Unpacking libjcommon-java (from .../libjcommon-java_1.0.16-2_all.deb) ... Selecting previously unselected package libwsdl4j-java. Unpacking libwsdl4j-java (from .../libwsdl4j-java_1.6.2-4_all.deb) ... Selecting previously unselected package libcommons-discovery-java. Unpacking libcommons-discovery-java (from .../libcommons-discovery-java_0.5-3_all.deb) ... 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Unpacking biomaj (from .../biomaj_1.2.1-1_all.deb) ... Setting up libgdbm3:amd64 (1.8.3-11) ... Setting up libssl1.0.0:amd64 (1.0.1e-2+deb7u20) ... Setting up libcap2:amd64 (1:2.22-1.2) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2+deb7u2) ... Setting up libgnutls26:amd64 (2.12.20-8+deb7u5) ... Setting up libkeyutils1:amd64 (1.5.5-3+deb7u1) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libpcre3:amd64 (1:8.30-5) ... Setting up libsqlite3-0:amd64 (3.7.13-1+deb7u2) ... Setting up libwrap0:amd64 (7.6.q-24) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7+wheezy5) ... Setting up libaio1:amd64 (0.3.109-3) ... Setting up libasound2:amd64 (1.0.25-4) ... Setting up libasyncns0:amd64 (0.8-4) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libglib2.0-0:amd64 (2.33.12+really2.32.4-5) ... No schema files found: doing nothing. Setting up libatk1.0-data (2.4.0-2) ... Setting up libatk1.0-0:amd64 (2.4.0-2) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u2) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u3) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1) ... Setting up libpixman-1-0:amd64 (0.26.0-4+deb7u2) ... Setting up libpng12-0:amd64 (1.2.49-1+deb7u2) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u2) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u2) ... Setting up libxcb-render0:amd64 (1.8.1-2+deb7u1) ... Setting up libxcb-shm0:amd64 (1.8.1-2+deb7u1) ... Setting up libxrender1:amd64 (1:0.9.7-1+deb7u2) ... Setting up libcairo2:amd64 (1.12.2-3) ... Setting up libjpeg8:amd64 (8d-1+deb7u1) ... Setting up libjasper1:amd64 (1.900.1-13+deb7u4) ... Setting up libjbig0:amd64 (2.0-2+deb7u1) ... Setting up libtiff4:amd64 (3.9.6-11) ... Setting up libgdk-pixbuf2.0-common (2.26.1-1+deb7u3) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.26.1-1+deb7u3) ... Setting up libgtk2.0-common (2.24.10-2) ... Setting up libavahi-common-data:amd64 (0.6.31-2) ... Setting up libavahi-common3:amd64 (0.6.31-2) ... Setting up libdbus-1-3:amd64 (1.6.8-1+deb7u6) ... Setting up libavahi-client3:amd64 (0.6.31-2) ... Setting up libcups2:amd64 (1.5.3-5+deb7u6) ... Setting up libthai-data (0.1.18-2) ... Setting up libdatrie1:amd64 (0.2.5-3) ... Setting up libthai0:amd64 (0.1.18-2) ... Setting up libxft2:amd64 (2.3.1-1) ... Setting up fontconfig (2.9.0-7.1) ... Regenerating fonts cache... done. Setting up libpango1.0-0:amd64 (1.30.0-1) ... Setting up libxcomposite1:amd64 (1:0.4.3-2) ... Setting up libxfixes3:amd64 (1:5.0-4+deb7u1) ... Setting up libxcursor1:amd64 (1:1.1.13-1+deb7u1) ... Setting up libxdamage1:amd64 (1:1.1.3-2) ... Setting up libxext6:amd64 (2:1.3.1-2+deb7u1) ... Setting up libxi6:amd64 (2:1.6.1-1+deb7u1) ... Setting up libxinerama1:amd64 (2:1.1.2-1+deb7u1) ... Setting up libxrandr2:amd64 (2:1.3.2-2+deb7u1) ... Setting up shared-mime-info (1.0-1+b1) ... Setting up libgtk2.0-0:amd64 (2.24.10-2) ... Setting up libatk-wrapper-java (0.30.4-3) ... Setting up libatk-wrapper-java-jni:amd64 (0.30.4-3) ... Setting up libogg0:amd64 (1.3.0-4) ... Setting up libflac8:amd64 (1.2.1-6+deb7u1) ... Setting up x11-common (1:7.7+3~deb7u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up liblcms2-2:amd64 (2.2+git20110628-2.2+deb7u1) ... Setting up libmysqlclient18:amd64 (5.5.47-0+deb7u1) ... Setting up libnspr4:amd64 (2:4.9.2-1+deb7u3) ... Setting up libnss3:amd64 (2:3.14.5-1+deb7u5) ... Setting up libpcsclite1:amd64 (1.8.4-1+deb7u1) ... Setting up libjson0:amd64 (0.10-1.2) ... Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libvorbis0a:amd64 (1.3.2-1.3) ... Setting up libvorbisenc2:amd64 (1.3.2-1.3) ... Setting up libsndfile1:amd64 (1.0.25-5) ... Setting up libx11-xcb1:amd64 (2:1.5.0-1+deb7u2) ... Setting up libxtst6:amd64 (2:1.2.1-1+deb7u1) ... Setting up libpulse0:amd64 (2.0-6.1) ... Setting up libclass-isa-perl (0.36-3) ... Setting up psmisc (22.19-1+deb7u1) ... Setting up mysql-server-core-5.5 (5.5.47-0+deb7u1) ... Setting up openssl (1.0.1e-2+deb7u20) ... Setting up ca-certificates (20130119+deb7u1) ... Setting up java-common (0.47) ... Setting up tzdata-java (2016d-0+deb7u1) ... Setting up libxml-commons-resolver1.1-java (1.2-7) ... Setting up libxml-commons-external-java (1.4.01-2) ... Setting up libxerces2-java (2.11.0-6) ... Setting up ant-contrib (1.0~b3+svn177-5) ... Setting up libhamcrest-java (1.2-2) ... Setting up libapache-pom-java (10-2) ... Setting up libcommons-parent-java (22-2) ... Setting up libcommons-lang-java (2.6-3) ... Setting up libcommons-cli-java (1.2-3) ... Setting up libcommons-codec-java (1.6-1) ... Setting up libcommons-pool-java (1.5.6-1) ... Setting up libcommons-dbcp-java (1.4-3) ... Setting up libcommons-logging-java (1.1.1-9) ... Setting up libcommons-httpclient-java (3.1-10.2+deb7u2) ... Setting up libcommons-net2-java (2.2-2) ... Setting up libgnujaf-java (1.1.1-8) ... Setting up libgnuinet-java (1.1.2-2) ... Setting up libgnumail-java (1.1.2-7) ... Setting up libservlet2.5-java (6.0.45+dfsg-1~deb7u1) ... Setting up libhsqldb-java (1.8.0.10+dfsg-0+deb7u1) ... Setting up libjcommon-java (1.0.16-2) ... Setting up libwsdl4j-java (1.6.2-4) ... Setting up libcommons-discovery-java (0.5-3) ... Setting up libaxis-java (1.4-16.2+deb7u1) ... Setting up libjava-xmlbuilder-java (0.4-2) ... Setting up libjets3t-java (0.8.1+dfsg-1) ... Setting up libjgoodies-forms-java (1.3.0-2) ... Setting up libjsch-java (0.1.42-2) ... Setting up liblog4j1.2-java (1.2.16-3) ... Setting up libmysql-java (5.1.16-2) ... Setting up liboro-java (2.0.8a-8) ... Setting up libgif4 (4.1.6-10+deb7u1) ... Setting up libregexp-java (1.5-3) ... Setting up libjaxen-java (1.1.3-1) ... Setting up libjdom1-java (1.1.2+dfsg-2) ... Setting up libjaxme-java (0.5.2+dfsg-6) ... Setting up libxpp2-java (2.1.10-7) ... Setting up libxpp3-java (1.1.4c-2) ... Setting up libbackport-util-concurrent-java (3.1-3) ... Setting up libdom4j-java (1.6.1+dfsg.2-6) ... Setting up libxom-java (1.2.1-3) ... Setting up libsaxonb-java (9.1.0.8-1) ... Setting up openjdk-6-jre-headless:amd64 (6b38-1.13.10-1~deb7u1) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up default-jre-headless (1:1.6-47) ... Setting up ant (1.8.2-4) ... Setting up ant-optional (1.8.2-4) ... Setting up junit4 (4.10-3) ... Setting up openjdk-6-jre:amd64 (6b38-1.13.10-1~deb7u1) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up default-jre (1:1.6-47) ... Setting up libswitch-perl (2.16-2) ... Setting up perl-modules (5.14.2-21+deb7u3) ... Setting up ca-certificates-java (20121112+nmu2) ... done. Setting up openjdk-6-jre-lib (6b38-1.13.10-1~deb7u1) ... Setting up perl (5.14.2-21+deb7u3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libdbi-perl (1.622-1+deb7u1) ... Setting up libdbd-mysql-perl (4.021-1+b1) ... Setting up mysql-client-5.5 (5.5.47-0+deb7u1) ... Setting up mysql-server-5.5 (5.5.47-0+deb7u1) ... Stopping MySQL database server: mysqld. Starting MySQL database server: mysqld .. Checking for tables which need an upgrade, are corrupt or were not closed cleanly.. Setting up mysql-server (5.5.47-0+deb7u1) ... Setting up biomaj (1.2.1-1) ... /var/lib/dpkg/info/biomaj.config: 17: [: =: unexpected operator Install database ERROR 1045 (28000): Access denied for user '-dbpwd'@'localhost' (using password: NO) Failed to run the SQL script on database Check your configuration and reexecute the script manually *************************************************************************************** Before running the migration, please check that database configuration is correctly set and that the database schema and user are correctly created. To upgrade the database, the script must be run with the following arguments: For a first install, all arguments are mandatory, for an upgrade, only some parameters are required. - First install: [ -dbuser DBUSER -dbpwd DBPASSWORD -db (mysql|hsql)] - From v1.1 : [ -admin LOGIN -adminpwd PASSWORD -adminemail ADMINEMAIL] To get the current version, execute: biomaj --version Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 171 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d.... Adding debian:cacert.org.pem Adding debian:ca.pem Adding debian:A-Trust-nQual-03.pem Adding debian:ACCVRAIZ1.pem Adding debian:ACEDICOM_Root.pem Adding debian:AC_Raíz_Certicámara_S.A..pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AddTrust_External_Root.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:America_Online_Root_Certification_Authority_1.pem Adding debian:America_Online_Root_Certification_Authority_2.pem Adding debian:ApplicationCA_-_Japanese_Government.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_CA_1.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_CA_1.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig.pem Adding debian:CA_Disig_Root_R1.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CNNIC_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:Certigna.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:Certum_Root_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem Adding debian:ComSign_CA.pem Adding debian:ComSign_Secured_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:DST_Root_CA_X3.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem Adding debian:EC-ACC.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust.net_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Equifax_Secure_CA.pem Adding debian:Equifax_Secure_Global_eBusiness_CA.pem Adding debian:Equifax_Secure_eBusiness_CA_1.pem Adding debian:GTE_CyberTrust_Global_Root.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:IGC_A.pem Adding debian:Izenpe.com.pem Adding debian:Juur-SK.pem Adding debian:Microsec_e-Szigno_Root_CA.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NetLock_Business_=Class_B=_Root.pem Adding debian:NetLock_Express_=Class_C=_Root.pem Adding debian:NetLock_Notary_=Class_A=_Root.pem Adding debian:NetLock_Qualified_=Class_QA=_Root.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:PSCProcert.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:RSA_Root_Certificate_1.pem Adding debian:RSA_Security_2048_v3.pem Adding debian:Root_CA_Generalitat_Valenciana.pem Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Adding debian:SG_TRUST_SERVICES_RACINE.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Sonera_Class_1_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:StartCom_Certification_Authority.pem Adding debian:StartCom_Certification_Authority_2.pem Adding debian:StartCom_Certification_Authority_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Platinum_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:Swisscom_Root_CA_2.pem Adding debian:Swisscom_Root_EV_CA_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TC_TrustCenter_Class_2_CA_II.pem Adding debian:TC_TrustCenter_Class_3_CA_II.pem Adding debian:TC_TrustCenter_Universal_CA_I.pem Adding debian:TDC_Internet_Root_CA.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Taiwan_GRCA.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Thawte_Premium_Server_CA.pem Adding debian:Thawte_Server_CA.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem Adding debian:UTN_DATACorp_SGC_Root_CA.pem Adding debian:UTN_USERFirst_Email_Root_CA.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:ValiCert_Class_1_VA.pem Adding debian:ValiCert_Class_2_VA.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:spi-ca-2003.pem Adding debian:spi-cacert-2008.pem done. done. 0m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', '-y', 'install', 'biomaj'] 0m39.6s INFO: Running scripts post_install 0m39.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_install_exceptions'] 0m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_install_exceptions'] 0m39.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 0m40.4s DUMP: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 25242 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 25242 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 25242 root txt REG 0,35 106920 2952489801 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/bin/dash mysqld_sa 25242 root mem REG 0,35 1607696 2952500567 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld_sa 25242 root mem REG 0,35 136936 2952500573 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld_sa 25242 root 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 25242 root 1w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 25242 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 25242 root 10r REG 0,35 24917 2952541619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/mysqld_safe mysqld 25626 150 cwd DIR 0,35 180 2952540362 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql mysqld 25626 150 rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld 25626 150 txt REG 0,35 12135856 2952538425 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/sbin/mysqld mysqld 25626 150 mem REG 0,35 47616 2952500553 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_files-2.13.so mysqld 25626 150 mem REG 0,35 43560 2952500545 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_nis-2.13.so mysqld 25626 150 mem REG 0,35 31584 2952500555 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_compat-2.13.so mysqld 25626 150 mem REG 0,35 89056 2952500556 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnsl-2.13.so mysqld 25626 150 mem REG 0,35 1607696 2952500567 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld 25626 150 mem REG 0,35 89056 2952500517 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 25626 150 mem REG 0,35 530736 2952500560 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libm-2.13.so mysqld 25626 150 mem REG 0,35 991600 2952491340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.17 mysqld 25626 150 mem REG 0,35 14768 2952500563 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libdl-2.13.so mysqld 25626 150 mem REG 0,35 35104 2952500564 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libcrypt-2.13.so mysqld 25626 150 mem REG 0,35 40656 2952513890 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 25626 150 mem REG 0,35 31744 2952500541 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/librt-2.13.so mysqld 25626 150 mem REG 0,35 92752 2952500488 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libz.so.1.2.7 mysqld 25626 150 mem REG 0,35 5464 2952513951 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 25626 150 mem REG 0,35 131107 2952500576 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libpthread-2.13.so mysqld 25626 150 mem REG 0,35 136936 2952500573 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld 25626 150 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld 25626 150 4uW REG 0,35 18874368 2952565020 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ibdata1 mysqld 25626 150 9uW REG 0,35 5242880 2952565025 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile0 mysqld 25626 150 10uW REG 0,35 5242880 2952565029 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile1 mysqld 25626 150 14u REG 0,35 35 2952564903 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSM mysqld 25626 150 15r REG 0,35 0 2952564904 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSV mysqld 25626 150 16u REG 0,35 2048 2952583175 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYI mysqld 25626 150 17u REG 0,35 328 2952583176 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYD mysqld 25626 150 18u REG 0,35 4096 2952579030 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYI mysqld 25626 150 19u REG 0,35 844 2952579031 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYD mysqld 25626 150 20u REG 0,35 5120 2952564934 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYI mysqld 25626 150 21u REG 0,35 1386 2952564935 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYD mysqld 25626 150 22u REG 0,35 2048 2952579069 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYI mysqld 25626 150 23u REG 0,35 0 2952579070 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYD mysqld 25626 150 24u REG 0,35 4096 2952582155 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYI mysqld 25626 150 25u REG 0,35 0 2952582156 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYD mysqld 25626 150 26u REG 0,35 4096 2952582161 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYI mysqld 25626 150 27u REG 0,35 0 2952582162 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYD mysqld 25626 150 28u REG 0,35 1024 2952564861 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYI mysqld 25626 150 29u REG 0,35 0 2952564862 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYD mysqld 25626 150 30u REG 0,35 4096 2952579006 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYI mysqld 25626 150 31u REG 0,35 0 2952579007 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYD mysqld 25626 150 33u REG 0,35 2048 2952579066 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYI mysqld 25626 150 34u REG 0,35 0 2952579067 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYD mysqld 25626 150 37u REG 0,35 3072 2952564873 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYI mysqld 25626 150 38u REG 0,35 1120 2952564874 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYD mysqld 25626 150 39u REG 0,35 18432 2952564879 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYI mysqld 25626 150 40u REG 0,35 104410 2952564880 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYD mysqld 25626 150 41u REG 0,35 20480 2952564876 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYI mysqld 25626 150 42u REG 0,35 9990 2952564877 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYD mysqld 25626 150 43u REG 0,35 21504 2952564870 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYI mysqld 25626 150 44u REG 0,35 482440 2952564871 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYD mysqld 25626 150 45u REG 0,35 1024 2952564912 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 25626 150 46u REG 0,35 0 2952564913 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 25626 150 47u REG 0,35 2048 2952579060 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYI mysqld 25626 150 48u REG 0,35 0 2952579061 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYD mysqld 25626 150 49u REG 0,35 1024 2952578934 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYI mysqld 25626 150 50u REG 0,35 0 2952578935 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYD mysqld 25626 150 51u REG 0,35 1024 2952578943 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYI mysqld 25626 150 52u REG 0,35 0 2952578944 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYD mysqld 25626 150 53u REG 0,35 1024 2952564885 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYI mysqld 25626 150 54u REG 0,35 0 2952564886 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYD mysqld 25626 150 55u REG 0,35 1024 2952564894 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 25626 150 56u REG 0,35 0 2952564895 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 25626 150 57u REG 0,35 1024 2952564882 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYI mysqld 25626 150 58u REG 0,35 0 2952564883 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYD mysqld 25626 150 59u REG 0,35 1024 2952564888 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 25626 150 60u REG 0,35 0 2952564889 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 25626 150 61u REG 0,35 1024 2952564891 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 25626 150 62u REG 0,35 0 2952564892 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 25626 150 63u REG 0,35 35 2952578940 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSM mysqld 25626 150 64r REG 0,35 0 2952578941 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSV logger 25628 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 25628 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 25628 root txt REG 0,35 19400 2952491038 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/logger logger 25628 root mem REG 0,35 1607696 2952500567 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so logger 25628 root mem REG 0,35 136936 2952500573 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so logger 25628 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null 0m40.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 0m40.4s ERROR: WARN: Processes are running inside chroot: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 25242 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 25242 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 25242 root txt REG 0,35 106920 2952489801 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/bin/dash mysqld_sa 25242 root mem REG 0,35 1607696 2952500567 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld_sa 25242 root mem REG 0,35 136936 2952500573 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld_sa 25242 root 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 25242 root 1w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 25242 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 25242 root 10r REG 0,35 24917 2952541619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/mysqld_safe mysqld 25626 150 cwd DIR 0,35 180 2952540362 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql mysqld 25626 150 rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld 25626 150 txt REG 0,35 12135856 2952538425 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/sbin/mysqld mysqld 25626 150 mem REG 0,35 47616 2952500553 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_files-2.13.so mysqld 25626 150 mem REG 0,35 43560 2952500545 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_nis-2.13.so mysqld 25626 150 mem REG 0,35 31584 2952500555 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_compat-2.13.so mysqld 25626 150 mem REG 0,35 89056 2952500556 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnsl-2.13.so mysqld 25626 150 mem REG 0,35 1607696 2952500567 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld 25626 150 mem REG 0,35 89056 2952500517 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 25626 150 mem REG 0,35 530736 2952500560 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libm-2.13.so mysqld 25626 150 mem REG 0,35 991600 2952491340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.17 mysqld 25626 150 mem REG 0,35 14768 2952500563 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libdl-2.13.so mysqld 25626 150 mem REG 0,35 35104 2952500564 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libcrypt-2.13.so mysqld 25626 150 mem REG 0,35 40656 2952513890 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 25626 150 mem REG 0,35 31744 2952500541 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/librt-2.13.so mysqld 25626 150 mem REG 0,35 92752 2952500488 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libz.so.1.2.7 mysqld 25626 150 mem REG 0,35 5464 2952513951 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 25626 150 mem REG 0,35 131107 2952500576 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libpthread-2.13.so mysqld 25626 150 mem REG 0,35 136936 2952500573 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld 25626 150 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld 25626 150 4uW REG 0,35 18874368 2952565020 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ibdata1 mysqld 25626 150 9uW REG 0,35 5242880 2952565025 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile0 mysqld 25626 150 10uW REG 0,35 5242880 2952565029 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile1 mysqld 25626 150 14u REG 0,35 35 2952564903 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSM mysqld 25626 150 15r REG 0,35 0 2952564904 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSV mysqld 25626 150 16u REG 0,35 2048 2952583175 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYI mysqld 25626 150 17u REG 0,35 328 2952583176 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYD mysqld 25626 150 18u REG 0,35 4096 2952579030 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYI mysqld 25626 150 19u REG 0,35 844 2952579031 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYD mysqld 25626 150 20u REG 0,35 5120 2952564934 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYI mysqld 25626 150 21u REG 0,35 1386 2952564935 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYD mysqld 25626 150 22u REG 0,35 2048 2952579069 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYI mysqld 25626 150 23u REG 0,35 0 2952579070 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYD mysqld 25626 150 24u REG 0,35 4096 2952582155 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYI mysqld 25626 150 25u REG 0,35 0 2952582156 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYD mysqld 25626 150 26u REG 0,35 4096 2952582161 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYI mysqld 25626 150 27u REG 0,35 0 2952582162 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYD mysqld 25626 150 28u REG 0,35 1024 2952564861 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYI mysqld 25626 150 29u REG 0,35 0 2952564862 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYD mysqld 25626 150 30u REG 0,35 4096 2952579006 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYI mysqld 25626 150 31u REG 0,35 0 2952579007 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYD mysqld 25626 150 33u REG 0,35 2048 2952579066 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYI mysqld 25626 150 34u REG 0,35 0 2952579067 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYD mysqld 25626 150 37u REG 0,35 3072 2952564873 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYI mysqld 25626 150 38u REG 0,35 1120 2952564874 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYD mysqld 25626 150 39u REG 0,35 18432 2952564879 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYI mysqld 25626 150 40u REG 0,35 104410 2952564880 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYD mysqld 25626 150 41u REG 0,35 20480 2952564876 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYI mysqld 25626 150 42u REG 0,35 9990 2952564877 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYD mysqld 25626 150 43u REG 0,35 21504 2952564870 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYI mysqld 25626 150 44u REG 0,35 482440 2952564871 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYD mysqld 25626 150 45u REG 0,35 1024 2952564912 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 25626 150 46u REG 0,35 0 2952564913 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 25626 150 47u REG 0,35 2048 2952579060 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYI mysqld 25626 150 48u REG 0,35 0 2952579061 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYD mysqld 25626 150 49u REG 0,35 1024 2952578934 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYI mysqld 25626 150 50u REG 0,35 0 2952578935 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYD mysqld 25626 150 51u REG 0,35 1024 2952578943 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYI mysqld 25626 150 52u REG 0,35 0 2952578944 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYD mysqld 25626 150 53u REG 0,35 1024 2952564885 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYI mysqld 25626 150 54u REG 0,35 0 2952564886 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYD mysqld 25626 150 55u REG 0,35 1024 2952564894 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 25626 150 56u REG 0,35 0 2952564895 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 25626 150 57u REG 0,35 1024 2952564882 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYI mysqld 25626 150 58u REG 0,35 0 2952564883 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYD mysqld 25626 150 59u REG 0,35 1024 2952564888 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 25626 150 60u REG 0,35 0 2952564889 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 25626 150 61u REG 0,35 1024 2952564891 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 25626 150 62u REG 0,35 0 2952564892 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 25626 150 63u REG 0,35 35 2952578940 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSM mysqld 25626 150 64r REG 0,35 0 2952578941 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSV logger 25628 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 25628 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 25628 root txt REG 0,35 19400 2952491038 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/logger logger 25628 root mem REG 0,35 1607696 2952500567 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so logger 25628 root mem REG 0,35 136936 2952500573 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so logger 25628 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null 0m40.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpttMO7X to wheezy-lts 0m40.4s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main deb http://security.debian.org wheezy/updates main 0m40.4s INFO: Running scripts pre_distupgrade 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_distupgrade_exceptions'] 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_distupgrade_exceptions'] 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_distupgrade_wheezy'] 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_distupgrade_wheezy'] 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m43.1s DUMP: Upgrading early: mysql-server Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Get:1 http://security.debian.org wheezy/updates Release.gpg [1601 B] Get:2 http://security.debian.org wheezy/updates Release [39.0 kB] Get:3 http://security.debian.org wheezy/updates/main amd64 Packages [615 kB] Get:4 http://security.debian.org wheezy/updates/main Translation-en [337 kB] Fetched 993 kB in 0s (1031 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: mysql-server 1 upgraded, 0 newly installed, 0 to remove and 65 not upgraded. Need to get 78.2 kB of archives. After this operation, 2048 B disk space will be freed. Get:1 http://security.debian.org/ wheezy/updates/main mysql-server all 5.5.59-0+deb7u1 [78.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 78.2 kB in 0s (376 kB/s) (Reading database ... 13055 files and directories currently installed.) Preparing to replace mysql-server 5.5.47-0+deb7u1 (using .../mysql-server_5.5.59-0+deb7u1_all.deb) ... Unpacking replacement mysql-server ... Setting up mysql-server (5.5.59-0+deb7u1) ... 0m43.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m43.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m43.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m43.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', 'update'] 0m44.9s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Hit http://security.debian.org wheezy/updates Release.gpg Hit http://security.debian.org wheezy/updates Release Hit http://security.debian.org wheezy/updates/main amd64 Packages Hit http://security.debian.org wheezy/updates/main Translation-en Reading package lists... 0m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', 'update'] 0m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', '-yf', 'dist-upgrade'] 1m20.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libdrm2 libgl1-mesa-glx libglapi-mesa libsctp1 libxcb-glx0 libxxf86vm1 openjdk-7-jre openjdk-7-jre-headless The following packages will be upgraded: bash ca-certificates default-jre default-jre-headless fontconfig fontconfig-config gnupg gpgv java-common libc-bin libc6 libcairo2 libcups2 libdb5.1 libdbd-mysql-perl libexpat1 libffi5 libfontconfig1 libfreetype6 libgcrypt11 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgssapi-krb5-2 libjasper1 libjsch-java libk5crypto3 libkrb5-3 libkrb5support0 liblcms2-2 libmysql-java libmysqlclient18 libnspr4 libnss3 libpcsclite1 libservlet2.5-java libsndfile1 libsqlite3-0 libssl1.0.0 libtasn1-3 libtiff4 libx11-6 libx11-data libx11-xcb1 libxcursor1 libxfixes3 libxi6 libxml2 libxrandr2 libxrender1 libxtst6 login multiarch-support mysql-client-5.5 mysql-common mysql-server-5.5 mysql-server-core-5.5 openssl passwd perl perl-base perl-modules sensible-utils tar tzdata tzdata-java 65 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 87.4 MB of archives. After this operation, 60.2 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main libdrm2 amd64 2.4.40-1~deb7u2 [459 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main libglapi-mesa amd64 8.0.5-4+deb7u2 [46.8 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb-glx0 amd64 1.8.1-2+deb7u1 [32.2 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libxxf86vm1 amd64 1:1.1.2-1+deb7u1 [19.5 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main libgl1-mesa-glx amd64 8.0.5-4+deb7u2 [134 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main libsctp1 amd64 1.0.11+dfsg-2 [26.1 kB] Get:7 http://security.debian.org/ wheezy/updates/main bash amd64 4.2+dfsg-0.1+deb7u4 [1499 kB] Get:8 http://security.debian.org/ wheezy/updates/main login amd64 1:4.1.5.1-1+deb7u1 [984 kB] Get:9 http://security.debian.org/ wheezy/updates/main perl amd64 5.14.2-21+deb7u5 [4434 kB] Get:10 http://security.debian.org/ wheezy/updates/main perl-base amd64 5.14.2-21+deb7u5 [1534 kB] Get:11 http://security.debian.org/ wheezy/updates/main perl-modules all 5.14.2-21+deb7u5 [3441 kB] Get:12 http://security.debian.org/ wheezy/updates/main libc-bin amd64 2.13-38+deb7u12 [1275 kB] Get:13 http://security.debian.org/ wheezy/updates/main libc6 amd64 2.13-38+deb7u12 [4226 kB] Get:14 http://security.debian.org/ wheezy/updates/main libdb5.1 amd64 5.1.29-5+deb7u1 [723 kB] Get:15 http://security.debian.org/ wheezy/updates/main tar amd64 1.26+dfsg-0.1+deb7u1 [984 kB] Get:16 http://security.debian.org/ wheezy/updates/main libgcrypt11 amd64 1.5.0-5+deb7u6 [301 kB] Get:17 http://security.debian.org/ wheezy/updates/main libssl1.0.0 amd64 1.0.1t-1+deb7u3 [1281 kB] Get:18 http://security.debian.org/ wheezy/updates/main libtasn1-3 amd64 2.13-2+deb7u5 [68.9 kB] Get:19 http://security.debian.org/ wheezy/updates/main libk5crypto3 amd64 1.10.1+dfsg-5+deb7u9 [114 kB] Get:20 http://security.debian.org/ wheezy/updates/main libgssapi-krb5-2 amd64 1.10.1+dfsg-5+deb7u9 [150 kB] Get:21 http://security.debian.org/ wheezy/updates/main libkrb5-3 amd64 1.10.1+dfsg-5+deb7u9 [394 kB] Get:22 http://security.debian.org/ wheezy/updates/main libkrb5support0 amd64 1.10.1+dfsg-5+deb7u9 [50.7 kB] Get:23 http://security.debian.org/ wheezy/updates/main libexpat1 amd64 2.1.0-1+deb7u5 [139 kB] Get:24 http://security.debian.org/ wheezy/updates/main libfreetype6 amd64 2.4.9-1.1+deb7u7 [454 kB] Get:25 http://security.debian.org/ wheezy/updates/main libfontconfig1 amd64 2.9.0-7.1+deb7u1 [300 kB] Get:26 http://security.debian.org/ wheezy/updates/main fontconfig-config all 2.9.0-7.1+deb7u1 [233 kB] Get:27 http://security.debian.org/ wheezy/updates/main libx11-data all 2:1.5.0-1+deb7u4 [189 kB] Get:28 http://security.debian.org/ wheezy/updates/main libx11-6 amd64 2:1.5.0-1+deb7u4 [902 kB] Get:29 http://security.debian.org/ wheezy/updates/main libxrender1 amd64 1:0.9.7-1+deb7u3 [33.5 kB] Get:30 http://security.debian.org/ wheezy/updates/main libcairo2 amd64 1.12.2-3+deb7u1 [912 kB] Get:31 http://security.debian.org/ wheezy/updates/main libcups2 amd64 1.5.3-5+deb7u7 [256 kB] Get:32 http://security.debian.org/ wheezy/updates/main libgdk-pixbuf2.0-0 amd64 2.26.1-1+deb7u8 [161 kB] Get:33 http://security.debian.org/ wheezy/updates/main libgdk-pixbuf2.0-common all 2.26.1-1+deb7u8 [288 kB] Get:34 http://security.debian.org/ wheezy/updates/main libjasper1 amd64 1.900.1-13+deb7u6 [161 kB] Get:35 http://security.debian.org/ wheezy/updates/main libtiff4 amd64 3.9.6-11+deb7u9 [206 kB] Get:36 http://security.debian.org/ wheezy/updates/main libx11-xcb1 amd64 2:1.5.0-1+deb7u4 [139 kB] Get:37 http://security.debian.org/ wheezy/updates/main libxfixes3 amd64 1:5.0-4+deb7u2 [21.6 kB] Get:38 http://security.debian.org/ wheezy/updates/main liblcms2-2 amd64 2.2+git20110628-2.2+deb7u2 [144 kB] Get:39 http://security.debian.org/ wheezy/updates/main mysql-common all 5.5.59-0+deb7u1 [79.9 kB] Get:40 http://security.debian.org/ wheezy/updates/main libmysqlclient18 amd64 5.5.59-0+deb7u1 [686 kB] Get:41 http://security.debian.org/ wheezy/updates/main libnspr4 amd64 2:4.12-1+deb7u1 [141 kB] Get:42 http://security.debian.org/ wheezy/updates/main libsqlite3-0 amd64 3.7.13-1+deb7u4 [454 kB] Get:43 http://security.debian.org/ wheezy/updates/main libnss3 amd64 2:3.26-1+debu7u5 [1134 kB] Get:44 http://security.debian.org/ wheezy/updates/main libpcsclite1 amd64 1.8.4-1+deb7u2 [57.1 kB] Get:45 http://security.debian.org/ wheezy/updates/main libsndfile1 amd64 1.0.25-9.1+deb7u4 [246 kB] Get:46 http://security.debian.org/ wheezy/updates/main libxcursor1 amd64 1:1.1.13-1+deb7u2 [27.1 kB] Get:47 http://security.debian.org/ wheezy/updates/main libxi6 amd64 2:1.6.1-1+deb7u3 [76.4 kB] Get:48 http://security.debian.org/ wheezy/updates/main libxml2 amd64 2.8.0+dfsg1-7+wheezy12 [907 kB] Get:49 http://security.debian.org/ wheezy/updates/main libxrandr2 amd64 2:1.3.2-2+deb7u2 [33.9 kB] Get:50 http://security.debian.org/ wheezy/updates/main libxtst6 amd64 2:1.2.1-1+deb7u2 [27.5 kB] Get:51 http://security.debian.org/ wheezy/updates/main libdbd-mysql-perl amd64 4.021-1+deb7u3 [128 kB] Get:52 http://security.debian.org/ wheezy/updates/main mysql-client-5.5 amd64 5.5.59-0+deb7u1 [1776 kB] Get:53 http://security.debian.org/ wheezy/updates/main passwd amd64 1:4.1.5.1-1+deb7u1 [1262 kB] Get:54 http://security.debian.org/ wheezy/updates/main mysql-server-core-5.5 amd64 5.5.59-0+deb7u1 [3987 kB] Get:55 http://security.debian.org/ wheezy/updates/main mysql-server-5.5 amd64 5.5.59-0+deb7u1 [1963 kB] Get:56 http://security.debian.org/ wheezy/updates/main tzdata-java all 2018c-0+deb7u1 [137 kB] Get:57 http://security.debian.org/ wheezy/updates/main tzdata all 2018c-0+deb7u1 [496 kB] Get:58 http://security.debian.org/ wheezy/updates/main java-common all 0.47+deb7u2 [139 kB] Get:59 http://security.debian.org/ wheezy/updates/main openjdk-7-jre-headless amd64 7u151-2.6.11-2~deb7u3 [41.6 MB] Get:60 http://security.debian.org/ wheezy/updates/main libffi5 amd64 3.0.10-3+deb7u2 [25.5 kB] Get:61 http://security.debian.org/ wheezy/updates/main gpgv amd64 1.4.12-7+deb7u9 [229 kB] Get:62 http://security.debian.org/ wheezy/updates/main gnupg amd64 1.4.12-7+deb7u9 [1954 kB] Get:63 http://security.debian.org/ wheezy/updates/main sensible-utils all 0.0.7+deb7u1 [9000 B] Get:64 http://security.debian.org/ wheezy/updates/main multiarch-support amd64 2.13-38+deb7u12 [152 kB] Get:65 http://security.debian.org/ wheezy/updates/main openssl amd64 1.0.1t-1+deb7u3 [700 kB] Get:66 http://security.debian.org/ wheezy/updates/main ca-certificates all 20130119+deb7u2 [210 kB] Get:67 http://security.debian.org/ wheezy/updates/main default-jre amd64 1:1.7-47+deb7u2 [842 B] Get:68 http://security.debian.org/ wheezy/updates/main default-jre-headless amd64 1:1.7-47+deb7u2 [8794 B] Get:69 http://security.debian.org/ wheezy/updates/main openjdk-7-jre amd64 7u151-2.6.11-2~deb7u3 [217 kB] Get:70 http://security.debian.org/ wheezy/updates/main fontconfig amd64 2.9.0-7.1+deb7u1 [348 kB] Get:71 http://security.debian.org/ wheezy/updates/main libjsch-java all 0.1.42-2+deb7u1 [216 kB] Get:72 http://security.debian.org/ wheezy/updates/main libmysql-java all 5.1.42-1~deb7u1 [1025 kB] Get:73 http://security.debian.org/ wheezy/updates/main libservlet2.5-java all 6.0.45+dfsg-1~deb7u5 [242 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.4 MB in 5s (15.4 MB/s) (Reading database ... 13055 files and directories currently installed.) Preparing to replace bash 4.2+dfsg-0.1+deb7u3 (using .../bash_4.2+dfsg-0.1+deb7u4_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.2+dfsg-0.1+deb7u4) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13055 files and directories currently installed.) Preparing to replace login 1:4.1.5.1-1 (using .../login_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.5.1-1+deb7u1) ... (Reading database ... 13055 files and directories currently installed.) Preparing to replace perl 5.14.2-21+deb7u3 (using .../perl_5.14.2-21+deb7u5_amd64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-21+deb7u3 (using .../perl-base_5.14.2-21+deb7u5_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-21+deb7u5) ... (Reading database ... 13055 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-21+deb7u3 (using .../perl-modules_5.14.2-21+deb7u5_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-38+deb7u12) ... (Reading database ... 13056 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.13-38+deb7u12) ... (Reading database ... 13056 files and directories currently installed.) Preparing to replace libdb5.1:amd64 5.1.29-5 (using .../libdb5.1_5.1.29-5+deb7u1_amd64.deb) ... Unpacking replacement libdb5.1:amd64 ... Setting up libdb5.1:amd64 (5.1.29-5+deb7u1) ... (Reading database ... 13056 files and directories currently installed.) Preparing to replace tar 1.26+dfsg-0.1 (using .../tar_1.26+dfsg-0.1+deb7u1_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.26+dfsg-0.1+deb7u1) ... (Reading database ... 13056 files and directories currently installed.) Preparing to replace libgcrypt11:amd64 1.5.0-5+deb7u4 (using .../libgcrypt11_1.5.0-5+deb7u6_amd64.deb) ... Unpacking replacement libgcrypt11:amd64 ... Preparing to replace libssl1.0.0:amd64 1.0.1e-2+deb7u20 (using .../libssl1.0.0_1.0.1t-1+deb7u3_amd64.deb) ... Unpacking replacement libssl1.0.0:amd64 ... Preparing to replace libtasn1-3:amd64 2.13-2+deb7u2 (using .../libtasn1-3_2.13-2+deb7u5_amd64.deb) ... Unpacking replacement libtasn1-3:amd64 ... Preparing to replace libk5crypto3:amd64 1.10.1+dfsg-5+deb7u7 (using .../libk5crypto3_1.10.1+dfsg-5+deb7u9_amd64.deb) ... Unpacking replacement libk5crypto3:amd64 ... Preparing to replace libgssapi-krb5-2:amd64 1.10.1+dfsg-5+deb7u7 (using .../libgssapi-krb5-2_1.10.1+dfsg-5+deb7u9_amd64.deb) ... Unpacking replacement libgssapi-krb5-2:amd64 ... Preparing to replace libkrb5-3:amd64 1.10.1+dfsg-5+deb7u7 (using .../libkrb5-3_1.10.1+dfsg-5+deb7u9_amd64.deb) ... Unpacking replacement libkrb5-3:amd64 ... Preparing to replace libkrb5support0:amd64 1.10.1+dfsg-5+deb7u7 (using .../libkrb5support0_1.10.1+dfsg-5+deb7u9_amd64.deb) ... Unpacking replacement libkrb5support0:amd64 ... Preparing to replace libexpat1:amd64 2.1.0-1+deb7u2 (using .../libexpat1_2.1.0-1+deb7u5_amd64.deb) ... Unpacking replacement libexpat1:amd64 ... Preparing to replace libfreetype6:amd64 2.4.9-1.1+deb7u3 (using .../libfreetype6_2.4.9-1.1+deb7u7_amd64.deb) ... Unpacking replacement libfreetype6:amd64 ... Preparing to replace libfontconfig1:amd64 2.9.0-7.1 (using .../libfontconfig1_2.9.0-7.1+deb7u1_amd64.deb) ... Unpacking replacement libfontconfig1:amd64 ... Preparing to replace fontconfig-config 2.9.0-7.1 (using .../fontconfig-config_2.9.0-7.1+deb7u1_all.deb) ... Unpacking replacement fontconfig-config ... Preparing to replace libx11-data 2:1.5.0-1+deb7u2 (using .../libx11-data_2%3a1.5.0-1+deb7u4_all.deb) ... Unpacking replacement libx11-data ... Preparing to replace libx11-6:amd64 2:1.5.0-1+deb7u2 (using .../libx11-6_2%3a1.5.0-1+deb7u4_amd64.deb) ... Unpacking replacement libx11-6:amd64 ... Preparing to replace libxrender1:amd64 1:0.9.7-1+deb7u2 (using .../libxrender1_1%3a0.9.7-1+deb7u3_amd64.deb) ... Unpacking replacement libxrender1:amd64 ... Preparing to replace libcairo2:amd64 1.12.2-3 (using .../libcairo2_1.12.2-3+deb7u1_amd64.deb) ... Unpacking replacement libcairo2:amd64 ... Preparing to replace libcups2:amd64 1.5.3-5+deb7u6 (using .../libcups2_1.5.3-5+deb7u7_amd64.deb) ... Unpacking replacement libcups2:amd64 ... Selecting previously unselected package libdrm2:amd64. Unpacking libdrm2:amd64 (from .../libdrm2_2.4.40-1~deb7u2_amd64.deb) ... Preparing to replace libgdk-pixbuf2.0-0:amd64 2.26.1-1+deb7u3 (using .../libgdk-pixbuf2.0-0_2.26.1-1+deb7u8_amd64.deb) ... Unpacking replacement libgdk-pixbuf2.0-0:amd64 ... Preparing to replace libgdk-pixbuf2.0-common 2.26.1-1+deb7u3 (using .../libgdk-pixbuf2.0-common_2.26.1-1+deb7u8_all.deb) ... Unpacking replacement libgdk-pixbuf2.0-common ... Preparing to replace libjasper1:amd64 1.900.1-13+deb7u4 (using .../libjasper1_1.900.1-13+deb7u6_amd64.deb) ... Unpacking replacement libjasper1:amd64 ... Preparing to replace libtiff4:amd64 3.9.6-11 (using .../libtiff4_3.9.6-11+deb7u9_amd64.deb) ... Unpacking replacement libtiff4:amd64 ... Selecting previously unselected package libglapi-mesa:amd64. Unpacking libglapi-mesa:amd64 (from .../libglapi-mesa_8.0.5-4+deb7u2_amd64.deb) ... Preparing to replace libx11-xcb1:amd64 2:1.5.0-1+deb7u2 (using .../libx11-xcb1_2%3a1.5.0-1+deb7u4_amd64.deb) ... Unpacking replacement libx11-xcb1:amd64 ... Selecting previously unselected package libxcb-glx0:amd64. Unpacking libxcb-glx0:amd64 (from .../libxcb-glx0_1.8.1-2+deb7u1_amd64.deb) ... Preparing to replace libxfixes3:amd64 1:5.0-4+deb7u1 (using .../libxfixes3_1%3a5.0-4+deb7u2_amd64.deb) ... Unpacking replacement libxfixes3:amd64 ... Selecting previously unselected package libxxf86vm1:amd64. Unpacking libxxf86vm1:amd64 (from .../libxxf86vm1_1%3a1.1.2-1+deb7u1_amd64.deb) ... Selecting previously unselected package libgl1-mesa-glx:amd64. Unpacking libgl1-mesa-glx:amd64 (from .../libgl1-mesa-glx_8.0.5-4+deb7u2_amd64.deb) ... Preparing to replace liblcms2-2:amd64 2.2+git20110628-2.2+deb7u1 (using .../liblcms2-2_2.2+git20110628-2.2+deb7u2_amd64.deb) ... Unpacking replacement liblcms2-2:amd64 ... Preparing to replace mysql-common 5.5.47-0+deb7u1 (using .../mysql-common_5.5.59-0+deb7u1_all.deb) ... Unpacking replacement mysql-common ... Preparing to replace libmysqlclient18:amd64 5.5.47-0+deb7u1 (using .../libmysqlclient18_5.5.59-0+deb7u1_amd64.deb) ... Unpacking replacement libmysqlclient18:amd64 ... Preparing to replace libnspr4:amd64 2:4.9.2-1+deb7u3 (using .../libnspr4_2%3a4.12-1+deb7u1_amd64.deb) ... Unpacking replacement libnspr4:amd64 ... Preparing to replace libsqlite3-0:amd64 3.7.13-1+deb7u2 (using .../libsqlite3-0_3.7.13-1+deb7u4_amd64.deb) ... Unpacking replacement libsqlite3-0:amd64 ... Preparing to replace libnss3:amd64 2:3.14.5-1+deb7u5 (using .../libnss3_2%3a3.26-1+debu7u5_amd64.deb) ... Unpacking replacement libnss3:amd64 ... Preparing to replace libpcsclite1:amd64 1.8.4-1+deb7u1 (using .../libpcsclite1_1.8.4-1+deb7u2_amd64.deb) ... Unpacking replacement libpcsclite1:amd64 ... Preparing to replace libsndfile1:amd64 1.0.25-5 (using .../libsndfile1_1.0.25-9.1+deb7u4_amd64.deb) ... Unpacking replacement libsndfile1:amd64 ... Preparing to replace libxcursor1:amd64 1:1.1.13-1+deb7u1 (using .../libxcursor1_1%3a1.1.13-1+deb7u2_amd64.deb) ... Unpacking replacement libxcursor1:amd64 ... Preparing to replace libxi6:amd64 2:1.6.1-1+deb7u1 (using .../libxi6_2%3a1.6.1-1+deb7u3_amd64.deb) ... Unpacking replacement libxi6:amd64 ... Preparing to replace libxml2:amd64 2.8.0+dfsg1-7+wheezy5 (using .../libxml2_2.8.0+dfsg1-7+wheezy12_amd64.deb) ... Unpacking replacement libxml2:amd64 ... Preparing to replace libxrandr2:amd64 2:1.3.2-2+deb7u1 (using .../libxrandr2_2%3a1.3.2-2+deb7u2_amd64.deb) ... Unpacking replacement libxrandr2:amd64 ... Preparing to replace libxtst6:amd64 2:1.2.1-1+deb7u1 (using .../libxtst6_2%3a1.2.1-1+deb7u2_amd64.deb) ... Unpacking replacement libxtst6:amd64 ... Preparing to replace libdbd-mysql-perl 4.021-1+b1 (using .../libdbd-mysql-perl_4.021-1+deb7u3_amd64.deb) ... Unpacking replacement libdbd-mysql-perl ... Preparing to replace mysql-client-5.5 5.5.47-0+deb7u1 (using .../mysql-client-5.5_5.5.59-0+deb7u1_amd64.deb) ... Unpacking replacement mysql-client-5.5 ... Preparing to replace passwd 1:4.1.5.1-1 (using .../passwd_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.5.1-1+deb7u1) ... (Reading database ... 13094 files and directories currently installed.) Preparing to replace mysql-server-core-5.5 5.5.47-0+deb7u1 (using .../mysql-server-core-5.5_5.5.59-0+deb7u1_amd64.deb) ... Unpacking replacement mysql-server-core-5.5 ... Setting up mysql-common (5.5.59-0+deb7u1) ... (Reading database ... 13094 files and directories currently installed.) Preparing to replace mysql-server-5.5 5.5.47-0+deb7u1 (using .../mysql-server-5.5_5.5.59-0+deb7u1_amd64.deb) ... Stopping MySQL database server: mysqld. Stopping MySQL database server: mysqld. Unpacking replacement mysql-server-5.5 ... Preparing to replace tzdata-java 2016d-0+deb7u1 (using .../tzdata-java_2018c-0+deb7u1_all.deb) ... Unpacking replacement tzdata-java ... Preparing to replace tzdata 2016d-0+deb7u1 (using .../tzdata_2018c-0+deb7u1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2018c-0+deb7u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Mar 25 14:38:51 UTC 2018. Universal Time is now: Sun Mar 25 14:38:51 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 13113 files and directories currently installed.) Preparing to replace java-common 0.47 (using .../java-common_0.47+deb7u2_all.deb) ... Unpacking replacement java-common ... Selecting previously unselected package libsctp1. Unpacking libsctp1 (from .../libsctp1_1.0.11+dfsg-2_amd64.deb) ... Selecting previously unselected package openjdk-7-jre-headless:amd64. Unpacking openjdk-7-jre-headless:amd64 (from .../openjdk-7-jre-headless_7u151-2.6.11-2~deb7u3_amd64.deb) ... Preparing to replace libffi5:amd64 3.0.10-3 (using .../libffi5_3.0.10-3+deb7u2_amd64.deb) ... Unpacking replacement libffi5:amd64 ... Preparing to replace gpgv 1.4.12-7+deb7u7 (using .../gpgv_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.12-7+deb7u9) ... (Reading database ... 13340 files and directories currently installed.) Preparing to replace gnupg 1.4.12-7+deb7u7 (using .../gnupg_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.12-7+deb7u9) ... (Reading database ... 13340 files and directories currently installed.) Preparing to replace sensible-utils 0.0.7 (using .../sensible-utils_0.0.7+deb7u1_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.7+deb7u1) ... (Reading database ... 13340 files and directories currently installed.) Preparing to replace multiarch-support 2.13-38+deb7u10 (using .../multiarch-support_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-38+deb7u12) ... (Reading database ... 13340 files and directories currently installed.) Preparing to replace openssl 1.0.1e-2+deb7u20 (using .../openssl_1.0.1t-1+deb7u3_amd64.deb) ... Unpacking replacement openssl ... Preparing to replace ca-certificates 20130119+deb7u1 (using .../ca-certificates_20130119+deb7u2_all.deb) ... Unpacking replacement ca-certificates ... Preparing to replace default-jre 1:1.6-47 (using .../default-jre_1%3a1.7-47+deb7u2_amd64.deb) ... Unpacking replacement default-jre ... Preparing to replace default-jre-headless 1:1.6-47 (using .../default-jre-headless_1%3a1.7-47+deb7u2_amd64.deb) ... Unpacking replacement default-jre-headless ... Selecting previously unselected package openjdk-7-jre:amd64. Unpacking openjdk-7-jre:amd64 (from .../openjdk-7-jre_7u151-2.6.11-2~deb7u3_amd64.deb) ... Preparing to replace fontconfig 2.9.0-7.1 (using .../fontconfig_2.9.0-7.1+deb7u1_amd64.deb) ... Unpacking replacement fontconfig ... Preparing to replace libjsch-java 0.1.42-2 (using .../libjsch-java_0.1.42-2+deb7u1_all.deb) ... Unpacking replacement libjsch-java ... Preparing to replace libmysql-java 5.1.16-2 (using .../libmysql-java_5.1.42-1~deb7u1_all.deb) ... Unpacking replacement libmysql-java ... Preparing to replace libservlet2.5-java 6.0.45+dfsg-1~deb7u1 (using .../libservlet2.5-java_6.0.45+dfsg-1~deb7u5_all.deb) ... Unpacking replacement libservlet2.5-java ... Setting up libgcrypt11:amd64 (1.5.0-5+deb7u6) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb7u3) ... Setting up libtasn1-3:amd64 (2.13-2+deb7u5) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-5+deb7u9) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-5+deb7u9) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-5+deb7u9) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-5+deb7u9) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u5) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u7) ... Setting up fontconfig-config (2.9.0-7.1+deb7u1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u4) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u4) ... Setting up libxrender1:amd64 (1:0.9.7-1+deb7u3) ... Setting up libcairo2:amd64 (1.12.2-3+deb7u1) ... Setting up libcups2:amd64 (1.5.3-5+deb7u7) ... Setting up libdrm2:amd64 (2.4.40-1~deb7u2) ... Setting up libjasper1:amd64 (1.900.1-13+deb7u6) ... Setting up libtiff4:amd64 (3.9.6-11+deb7u9) ... Setting up libgdk-pixbuf2.0-common (2.26.1-1+deb7u8) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.26.1-1+deb7u8) ... Setting up libglapi-mesa:amd64 (8.0.5-4+deb7u2) ... Setting up libx11-xcb1:amd64 (2:1.5.0-1+deb7u4) ... Setting up libxcb-glx0:amd64 (1.8.1-2+deb7u1) ... Setting up libxfixes3:amd64 (1:5.0-4+deb7u2) ... Setting up libxxf86vm1:amd64 (1:1.1.2-1+deb7u1) ... Setting up libgl1-mesa-glx:amd64 (8.0.5-4+deb7u2) ... Setting up liblcms2-2:amd64 (2.2+git20110628-2.2+deb7u2) ... Setting up libmysqlclient18:amd64 (5.5.59-0+deb7u1) ... Setting up libnspr4:amd64 (2:4.12-1+deb7u1) ... Setting up libsqlite3-0:amd64 (3.7.13-1+deb7u4) ... Setting up libnss3:amd64 (2:3.26-1+debu7u5) ... Setting up libpcsclite1:amd64 (1.8.4-1+deb7u2) ... Setting up libsndfile1:amd64 (1.0.25-9.1+deb7u4) ... Setting up libxcursor1:amd64 (1:1.1.13-1+deb7u2) ... Setting up libxi6:amd64 (2:1.6.1-1+deb7u3) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7+wheezy12) ... Setting up libxrandr2:amd64 (2:1.3.2-2+deb7u2) ... Setting up libxtst6:amd64 (2:1.2.1-1+deb7u2) ... Setting up mysql-server-core-5.5 (5.5.59-0+deb7u1) ... Setting up tzdata-java (2018c-0+deb7u1) ... Setting up java-common (0.47+deb7u2) ... Setting up libsctp1 (1.0.11+dfsg-2) ... Setting up openjdk-7-jre-headless:amd64 (7u151-2.6.11-2~deb7u3) ... Setting up libffi5:amd64 (3.0.10-3+deb7u2) ... Setting up openssl (1.0.1t-1+deb7u3) ... Setting up ca-certificates (20130119+deb7u2) ... Setting up default-jre-headless (1:1.7-47+deb7u2) ... Setting up openjdk-7-jre:amd64 (7u151-2.6.11-2~deb7u3) ... Setting up default-jre (1:1.7-47+deb7u2) ... Setting up fontconfig (2.9.0-7.1+deb7u1) ... Regenerating fonts cache... done. Setting up libjsch-java (0.1.42-2+deb7u1) ... Setting up libmysql-java (5.1.42-1~deb7u1) ... Setting up libservlet2.5-java (6.0.45+dfsg-1~deb7u5) ... Setting up perl-modules (5.14.2-21+deb7u5) ... Setting up perl (5.14.2-21+deb7u5) ... Setting up libdbd-mysql-perl (4.021-1+deb7u3) ... Setting up mysql-client-5.5 (5.5.59-0+deb7u1) ... Setting up mysql-server-5.5 (5.5.59-0+deb7u1) ... Stopping MySQL database server: mysqld. Starting MySQL database server: mysqld .. Checking for tables which need an upgrade, are corrupt or were not closed cleanly.. Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 46 added, 52 removed; done. Running hooks in /etc/ca-certificates/update.d.... Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:Certplus_Root_CA_G1.pem Adding debian:Certplus_Root_CA_G2.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:D-TRUST_Root_CA_3_2013.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:ISRG_Root_X1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OpenTrust_Root_CA_G1.pem Adding debian:OpenTrust_Root_CA_G2.pem Adding debian:OpenTrust_Root_CA_G3.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:S-TRUST_Universal_Root_CA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Symantec_Class_1_Public_Primary_Certification_Authority_-_G4.pem Adding debian:Symantec_Class_1_Public_Primary_Certification_Authority_-_G6.pem Adding debian:Symantec_Class_2_Public_Primary_Certification_Authority_-_G4.pem Adding debian:Symantec_Class_2_Public_Primary_Certification_Authority_-_G6.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Removing debian:A-Trust-nQual-03.pem Removing debian:America_Online_Root_Certification_Authority_1.pem Removing debian:America_Online_Root_Certification_Authority_2.pem Removing debian:ApplicationCA_-_Japanese_Government.pem Removing debian:Buypass_Class_2_CA_1.pem Removing debian:Buypass_Class_3_CA_1.pem Removing debian:CA_Disig.pem Removing debian:ComSign_Secured_CA.pem Removing debian:Digital_Signature_Trust_Co._Global_CA_1.pem Removing debian:Digital_Signature_Trust_Co._Global_CA_3.pem Removing debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem Removing debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem Removing debian:Entrust.net_Secure_Server_CA.pem Removing debian:Equifax_Secure_CA.pem Removing debian:Equifax_Secure_Global_eBusiness_CA.pem Removing debian:Equifax_Secure_eBusiness_CA_1.pem Removing debian:GTE_CyberTrust_Global_Root.pem Removing debian:IGC_A.pem Removing debian:Juur-SK.pem Removing debian:Microsec_e-Szigno_Root_CA.pem Removing debian:NetLock_Business_=Class_B=_Root.pem Removing debian:NetLock_Express_=Class_C=_Root.pem Removing debian:NetLock_Notary_=Class_A=_Root.pem Removing debian:NetLock_Qualified_=Class_QA=_Root.pem Removing debian:RSA_Root_Certificate_1.pem Removing debian:RSA_Security_2048_v3.pem Removing debian:Root_CA_Generalitat_Valenciana.pem Removing debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Removing debian:SG_TRUST_SERVICES_RACINE.pem Removing debian:Sonera_Class_1_Root_CA.pem Removing debian:Staat_der_Nederlanden_Root_CA.pem Removing debian:StartCom_Certification_Authority.pem Removing debian:StartCom_Certification_Authority_2.pem Removing debian:StartCom_Certification_Authority_G2.pem Removing debian:TC_TrustCenter_Class_2_CA_II.pem Removing debian:TC_TrustCenter_Universal_CA_I.pem Removing debian:TDC_Internet_Root_CA.pem Removing debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem Removing debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem Removing debian:Thawte_Premium_Server_CA.pem Removing debian:Thawte_Server_CA.pem Removing debian:UTN_DATACorp_SGC_Root_CA.pem Removing debian:ValiCert_Class_1_VA.pem Removing debian:ValiCert_Class_2_VA.pem Removing debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Removing debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem Removing debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Removing debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Removing debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem Removing debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem Removing debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem Removing debian:WellsSecure_Public_Root_Certificate_Authority.pem done. done. 1m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', '-yf', 'dist-upgrade'] 1m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m20.8s DUMP: 5dc83649a5fb621dcb8a652ccf617ebc - 1m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'show', 'biomaj'] 1m20.8s DUMP: Package: biomaj Version: 1.2.1-1 Installed-Size: 4066 Maintainer: Debian Med Packaging Team Architecture: all Depends: debconf (>= 0.5) | debconf-2.0, ant, ant-contrib, ant-optional, junit4, libcommons-cli-java, libcommons-codec-java, libcommons-dbcp-java (>= 1.2), libcommons-httpclient-java, libcommons-logging-java, libcommons-net2-java (>= 2.2), libcommons-pool-java (>= 1.5), libgnujaf-java, libgnumail-java, libhsqldb-java, libjcommon-java (>= 1.0), libjets3t-java, libjgoodies-forms-java (>= 1.2), libjsch-java (>= 0.1.42), liblog4j1.2-java, libmysql-java, liboro-java (>= 2.0), default-jre | java6-runtime, debconf, libregexp-java (>= 1.4), libjdom1-java (>= 1.1), libsaxonb-java (>= 0.9), perl, mysql-server Suggests: ncbi-tools-bin, blast2 Description-en: biological data-bank updater BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily. Homepage: http://biomaj.genouest.org Description-md5: 09323ab0c5ce6116bf73c9371697c6c0 Tag: field::biology, field::biology:bioinformatics, implemented-in::java, interface::commandline, role::program Section: science Priority: optional Filename: pool/main/b/biomaj/biomaj_1.2.1-1_all.deb Size: 3767188 MD5sum: a7af84da040af1eb5f159a0085678606 SHA1: 2dbb21e0de82d77d91ef1c9be3428fa5a0715640 SHA256: cedfe2b50a505908d796152b59be6d5638f82f16c5db8899663ef611de3d1db6 1m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'show', 'biomaj'] 1m20.8s INFO: apt-cache knows about the following packages: biomaj 1m20.8s INFO: Running scripts pre_install 1m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_database-server'] 1m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_database-server'] 1m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_exceptions'] 1m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_exceptions'] 1m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_extras'] 1m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_extras'] 1m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_foreign_architecture'] 1m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_foreign_architecture'] 1m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'policy'] 1m20.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 1m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'policy'] 1m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'policy', 'biomaj'] 1m20.9s DUMP: biomaj: Installed: 1.2.1-1 Candidate: 1.2.1-1 Version table: *** 1.2.1-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 1m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'policy', 'biomaj'] 1m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', '-y', 'install', 'biomaj'] 1m21.1s DUMP: Reading package lists... Building dependency tree... Reading state information... biomaj is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', '-y', 'install', 'biomaj'] 1m21.1s INFO: Running scripts post_install 1m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_install_exceptions'] 1m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_install_exceptions'] 1m21.2s INFO: Running scripts post_distupgrade 1m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_distupgrade_exceptions'] 1m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_distupgrade_exceptions'] 1m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_distupgrade_zz_backports'] 1m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_distupgrade_zz_backports'] 1m21.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 1m21.9s DUMP: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 13615 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 13615 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 13615 root txt REG 0,35 106920 2952489801 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/bin/dash mysqld_sa 13615 root mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld_sa 13615 root mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld_sa 13615 root 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 1w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 10r REG 0,35 27482 2952641571 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/mysqld_safe mysqld 13946 150 cwd DIR 0,35 180 2952540362 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql mysqld 13946 150 rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld 13946 150 txt REG 0,35 12156272 2952638900 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/sbin/mysqld mysqld 13946 150 mem REG 0,35 47616 2952631718 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_files-2.13.so mysqld 13946 150 mem REG 0,35 43560 2952631723 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_nis-2.13.so mysqld 13946 150 mem REG 0,35 31584 2952631715 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_compat-2.13.so mysqld 13946 150 mem REG 0,35 89056 2952631712 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnsl-2.13.so mysqld 13946 150 mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld 13946 150 mem REG 0,35 89056 2952500517 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 13946 150 mem REG 0,35 530736 2952631698 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libm-2.13.so mysqld 13946 150 mem REG 0,35 991600 2952491340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.17 mysqld 13946 150 mem REG 0,35 14768 2952631697 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libdl-2.13.so mysqld 13946 150 mem REG 0,35 35104 2952631696 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libcrypt-2.13.so mysqld 13946 150 mem REG 0,35 40656 2952513890 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 13946 150 mem REG 0,35 31744 2952631733 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/librt-2.13.so mysqld 13946 150 mem REG 0,35 92752 2952500488 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libz.so.1.2.7 mysqld 13946 150 mem REG 0,35 5464 2952513951 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 13946 150 mem REG 0,35 131107 2952631614 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libpthread-2.13.so mysqld 13946 150 mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld 13946 150 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld 13946 150 4uW REG 0,35 18874368 2952565020 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ibdata1 mysqld 13946 150 9uW REG 0,35 5242880 2952565025 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile0 mysqld 13946 150 10uW REG 0,35 5242880 2952565029 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile1 mysqld 13946 150 14u REG 0,35 35 2952564903 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSM mysqld 13946 150 15r REG 0,35 0 2952564904 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSV mysqld 13946 150 16u REG 0,35 2048 2952685667 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYI mysqld 13946 150 17u REG 0,35 328 2952685668 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYD mysqld 13946 150 18u REG 0,35 4096 2952685618 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYI mysqld 13946 150 19u REG 0,35 844 2952685619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYD mysqld 13946 150 20u REG 0,35 5120 2952564934 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYI mysqld 13946 150 21u REG 0,35 1386 2952564935 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYD mysqld 13946 150 22u REG 0,35 2048 2952685658 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYI mysqld 13946 150 23u REG 0,35 0 2952685659 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYD mysqld 13946 150 24u REG 0,35 4096 2952680279 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYI mysqld 13946 150 25u REG 0,35 0 2952680280 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYD mysqld 13946 150 26u REG 0,35 4096 2952680285 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYI mysqld 13946 150 27u REG 0,35 0 2952680286 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYD mysqld 13946 150 28u REG 0,35 1024 2952564861 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYI mysqld 13946 150 29u REG 0,35 0 2952564862 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYD mysqld 13946 150 30u REG 0,35 4096 2952685594 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYI mysqld 13946 150 31u REG 0,35 0 2952685595 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYD mysqld 13946 150 33u REG 0,35 2048 2952685654 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYI mysqld 13946 150 34u REG 0,35 0 2952685655 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYD mysqld 13946 150 37u REG 0,35 3072 2952564873 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYI mysqld 13946 150 38u REG 0,35 1120 2952564874 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYD mysqld 13946 150 39u REG 0,35 19456 2952564879 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYI mysqld 13946 150 40u REG 0,35 105986 2952564880 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYD mysqld 13946 150 41u REG 0,35 22528 2952564876 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYI mysqld 13946 150 42u REG 0,35 10476 2952564877 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYD mysqld 13946 150 43u REG 0,35 19456 2952564870 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYI mysqld 13946 150 44u REG 0,35 491964 2952564871 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYD mysqld 13946 150 45u REG 0,35 1024 2952564912 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 13946 150 46u REG 0,35 0 2952564913 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 13946 150 47u REG 0,35 2048 2952685648 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYI mysqld 13946 150 48u REG 0,35 0 2952685649 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYD mysqld 13946 150 49u REG 0,35 1024 2952680318 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYI mysqld 13946 150 50u REG 0,35 0 2952680319 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYD mysqld 13946 150 51u REG 0,35 1024 2952680340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYI mysqld 13946 150 52u REG 0,35 0 2952680341 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYD mysqld 13946 150 53u REG 0,35 1024 2952564885 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYI mysqld 13946 150 54u REG 0,35 0 2952564886 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYD mysqld 13946 150 55u REG 0,35 1024 2952564894 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 13946 150 56u REG 0,35 0 2952564895 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 13946 150 57u REG 0,35 1024 2952564882 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYI mysqld 13946 150 58u REG 0,35 0 2952564883 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYD mysqld 13946 150 59u REG 0,35 1024 2952564888 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 13946 150 60u REG 0,35 0 2952564889 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 13946 150 61u REG 0,35 1024 2952564891 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 13946 150 62u REG 0,35 0 2952564892 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 13946 150 63u REG 0,35 35 2952680337 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSM mysqld 13946 150 64r REG 0,35 0 2952680338 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSV logger 13947 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 13947 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 13947 root txt REG 0,35 19400 2952491038 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/logger logger 13947 root mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so logger 13947 root mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so logger 13947 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null 1m21.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 1m21.9s ERROR: WARN: Processes are running inside chroot: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 13615 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 13615 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 13615 root txt REG 0,35 106920 2952489801 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/bin/dash mysqld_sa 13615 root mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld_sa 13615 root mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld_sa 13615 root 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 1w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 10r REG 0,35 27482 2952641571 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/mysqld_safe mysqld 13946 150 cwd DIR 0,35 180 2952540362 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql mysqld 13946 150 rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld 13946 150 txt REG 0,35 12156272 2952638900 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/sbin/mysqld mysqld 13946 150 mem REG 0,35 47616 2952631718 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_files-2.13.so mysqld 13946 150 mem REG 0,35 43560 2952631723 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_nis-2.13.so mysqld 13946 150 mem REG 0,35 31584 2952631715 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_compat-2.13.so mysqld 13946 150 mem REG 0,35 89056 2952631712 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnsl-2.13.so mysqld 13946 150 mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld 13946 150 mem REG 0,35 89056 2952500517 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 13946 150 mem REG 0,35 530736 2952631698 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libm-2.13.so mysqld 13946 150 mem REG 0,35 991600 2952491340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.17 mysqld 13946 150 mem REG 0,35 14768 2952631697 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libdl-2.13.so mysqld 13946 150 mem REG 0,35 35104 2952631696 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libcrypt-2.13.so mysqld 13946 150 mem REG 0,35 40656 2952513890 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 13946 150 mem REG 0,35 31744 2952631733 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/librt-2.13.so mysqld 13946 150 mem REG 0,35 92752 2952500488 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libz.so.1.2.7 mysqld 13946 150 mem REG 0,35 5464 2952513951 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 13946 150 mem REG 0,35 131107 2952631614 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libpthread-2.13.so mysqld 13946 150 mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld 13946 150 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld 13946 150 4uW REG 0,35 18874368 2952565020 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ibdata1 mysqld 13946 150 9uW REG 0,35 5242880 2952565025 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile0 mysqld 13946 150 10uW REG 0,35 5242880 2952565029 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile1 mysqld 13946 150 14u REG 0,35 35 2952564903 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSM mysqld 13946 150 15r REG 0,35 0 2952564904 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSV mysqld 13946 150 16u REG 0,35 2048 2952685667 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYI mysqld 13946 150 17u REG 0,35 328 2952685668 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYD mysqld 13946 150 18u REG 0,35 4096 2952685618 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYI mysqld 13946 150 19u REG 0,35 844 2952685619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYD mysqld 13946 150 20u REG 0,35 5120 2952564934 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYI mysqld 13946 150 21u REG 0,35 1386 2952564935 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYD mysqld 13946 150 22u REG 0,35 2048 2952685658 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYI mysqld 13946 150 23u REG 0,35 0 2952685659 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYD mysqld 13946 150 24u REG 0,35 4096 2952680279 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYI mysqld 13946 150 25u REG 0,35 0 2952680280 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYD mysqld 13946 150 26u REG 0,35 4096 2952680285 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYI mysqld 13946 150 27u REG 0,35 0 2952680286 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYD mysqld 13946 150 28u REG 0,35 1024 2952564861 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYI mysqld 13946 150 29u REG 0,35 0 2952564862 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYD mysqld 13946 150 30u REG 0,35 4096 2952685594 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYI mysqld 13946 150 31u REG 0,35 0 2952685595 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYD mysqld 13946 150 33u REG 0,35 2048 2952685654 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYI mysqld 13946 150 34u REG 0,35 0 2952685655 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYD mysqld 13946 150 37u REG 0,35 3072 2952564873 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYI mysqld 13946 150 38u REG 0,35 1120 2952564874 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYD mysqld 13946 150 39u REG 0,35 19456 2952564879 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYI mysqld 13946 150 40u REG 0,35 105986 2952564880 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYD mysqld 13946 150 41u REG 0,35 22528 2952564876 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYI mysqld 13946 150 42u REG 0,35 10476 2952564877 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYD mysqld 13946 150 43u REG 0,35 19456 2952564870 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYI mysqld 13946 150 44u REG 0,35 491964 2952564871 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYD mysqld 13946 150 45u REG 0,35 1024 2952564912 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 13946 150 46u REG 0,35 0 2952564913 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 13946 150 47u REG 0,35 2048 2952685648 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYI mysqld 13946 150 48u REG 0,35 0 2952685649 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYD mysqld 13946 150 49u REG 0,35 1024 2952680318 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYI mysqld 13946 150 50u REG 0,35 0 2952680319 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYD mysqld 13946 150 51u REG 0,35 1024 2952680340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYI mysqld 13946 150 52u REG 0,35 0 2952680341 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYD mysqld 13946 150 53u REG 0,35 1024 2952564885 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYI mysqld 13946 150 54u REG 0,35 0 2952564886 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYD mysqld 13946 150 55u REG 0,35 1024 2952564894 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 13946 150 56u REG 0,35 0 2952564895 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 13946 150 57u REG 0,35 1024 2952564882 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYI mysqld 13946 150 58u REG 0,35 0 2952564883 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYD mysqld 13946 150 59u REG 0,35 1024 2952564888 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 13946 150 60u REG 0,35 0 2952564889 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 13946 150 61u REG 0,35 1024 2952564891 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 13946 150 62u REG 0,35 0 2952564892 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 13946 150 63u REG 0,35 35 2952680337 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSM mysqld 13946 150 64r REG 0,35 0 2952680338 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSV logger 13947 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 13947 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 13947 root txt REG 0,35 19400 2952491038 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/logger logger 13947 root mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so logger 13947 root mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so logger 13947 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null 1m21.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 1m22.8s DUMP: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 13615 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 13615 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 13615 root txt REG 0,35 106920 2952489801 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/bin/dash mysqld_sa 13615 root mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld_sa 13615 root mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld_sa 13615 root 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 1w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 10r REG 0,35 27482 2952641571 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/mysqld_safe mysqld 13946 150 cwd DIR 0,35 180 2952540362 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql mysqld 13946 150 rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld 13946 150 txt REG 0,35 12156272 2952638900 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/sbin/mysqld mysqld 13946 150 mem REG 0,35 47616 2952631718 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_files-2.13.so mysqld 13946 150 mem REG 0,35 43560 2952631723 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_nis-2.13.so mysqld 13946 150 mem REG 0,35 31584 2952631715 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_compat-2.13.so mysqld 13946 150 mem REG 0,35 89056 2952631712 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnsl-2.13.so mysqld 13946 150 mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld 13946 150 mem REG 0,35 89056 2952500517 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 13946 150 mem REG 0,35 530736 2952631698 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libm-2.13.so mysqld 13946 150 mem REG 0,35 991600 2952491340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.17 mysqld 13946 150 mem REG 0,35 14768 2952631697 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libdl-2.13.so mysqld 13946 150 mem REG 0,35 35104 2952631696 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libcrypt-2.13.so mysqld 13946 150 mem REG 0,35 40656 2952513890 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 13946 150 mem REG 0,35 31744 2952631733 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/librt-2.13.so mysqld 13946 150 mem REG 0,35 92752 2952500488 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libz.so.1.2.7 mysqld 13946 150 mem REG 0,35 5464 2952513951 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 13946 150 mem REG 0,35 131107 2952631614 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libpthread-2.13.so mysqld 13946 150 mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld 13946 150 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld 13946 150 4uW REG 0,35 18874368 2952565020 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ibdata1 mysqld 13946 150 9uW REG 0,35 5242880 2952565025 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile0 mysqld 13946 150 10uW REG 0,35 5242880 2952565029 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile1 mysqld 13946 150 14u REG 0,35 35 2952564903 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSM mysqld 13946 150 15r REG 0,35 0 2952564904 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSV mysqld 13946 150 16u REG 0,35 2048 2952685667 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYI mysqld 13946 150 17u REG 0,35 328 2952685668 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYD mysqld 13946 150 18u REG 0,35 4096 2952685618 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYI mysqld 13946 150 19u REG 0,35 844 2952685619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYD mysqld 13946 150 20u REG 0,35 5120 2952564934 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYI mysqld 13946 150 21u REG 0,35 1386 2952564935 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYD mysqld 13946 150 22u REG 0,35 2048 2952685658 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYI mysqld 13946 150 23u REG 0,35 0 2952685659 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYD mysqld 13946 150 24u REG 0,35 4096 2952680279 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYI mysqld 13946 150 25u REG 0,35 0 2952680280 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYD mysqld 13946 150 26u REG 0,35 4096 2952680285 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYI mysqld 13946 150 27u REG 0,35 0 2952680286 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYD mysqld 13946 150 28u REG 0,35 1024 2952564861 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYI mysqld 13946 150 29u REG 0,35 0 2952564862 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYD mysqld 13946 150 30u REG 0,35 4096 2952685594 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYI mysqld 13946 150 31u REG 0,35 0 2952685595 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYD mysqld 13946 150 33u REG 0,35 2048 2952685654 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYI mysqld 13946 150 34u REG 0,35 0 2952685655 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYD mysqld 13946 150 37u REG 0,35 3072 2952564873 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYI mysqld 13946 150 38u REG 0,35 1120 2952564874 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYD mysqld 13946 150 39u REG 0,35 19456 2952564879 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYI mysqld 13946 150 40u REG 0,35 105986 2952564880 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYD mysqld 13946 150 41u REG 0,35 22528 2952564876 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYI mysqld 13946 150 42u REG 0,35 10476 2952564877 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYD mysqld 13946 150 43u REG 0,35 19456 2952564870 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYI mysqld 13946 150 44u REG 0,35 491964 2952564871 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYD mysqld 13946 150 45u REG 0,35 1024 2952564912 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 13946 150 46u REG 0,35 0 2952564913 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 13946 150 47u REG 0,35 2048 2952685648 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYI mysqld 13946 150 48u REG 0,35 0 2952685649 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYD mysqld 13946 150 49u REG 0,35 1024 2952680318 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYI mysqld 13946 150 50u REG 0,35 0 2952680319 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYD mysqld 13946 150 51u REG 0,35 1024 2952680340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYI mysqld 13946 150 52u REG 0,35 0 2952680341 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYD mysqld 13946 150 53u REG 0,35 1024 2952564885 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYI mysqld 13946 150 54u REG 0,35 0 2952564886 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYD mysqld 13946 150 55u REG 0,35 1024 2952564894 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 13946 150 56u REG 0,35 0 2952564895 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 13946 150 57u REG 0,35 1024 2952564882 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYI mysqld 13946 150 58u REG 0,35 0 2952564883 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYD mysqld 13946 150 59u REG 0,35 1024 2952564888 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 13946 150 60u REG 0,35 0 2952564889 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 13946 150 61u REG 0,35 1024 2952564891 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 13946 150 62u REG 0,35 0 2952564892 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 13946 150 63u REG 0,35 35 2952680337 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSM mysqld 13946 150 64r REG 0,35 0 2952680338 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSV logger 13947 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 13947 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 13947 root txt REG 0,35 19400 2952491038 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/logger logger 13947 root mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so logger 13947 root mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so logger 13947 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null 1m22.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 1m22.8s ERROR: WARN: Processes are running inside chroot: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 13615 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 13615 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 13615 root txt REG 0,35 106920 2952489801 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/bin/dash mysqld_sa 13615 root mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld_sa 13615 root mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld_sa 13615 root 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 1w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 10r REG 0,35 27482 2952641571 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/mysqld_safe mysqld 13946 150 cwd DIR 0,35 180 2952540362 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql mysqld 13946 150 rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld 13946 150 txt REG 0,35 12156272 2952638900 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/sbin/mysqld mysqld 13946 150 mem REG 0,35 47616 2952631718 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_files-2.13.so mysqld 13946 150 mem REG 0,35 43560 2952631723 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_nis-2.13.so mysqld 13946 150 mem REG 0,35 31584 2952631715 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_compat-2.13.so mysqld 13946 150 mem REG 0,35 89056 2952631712 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnsl-2.13.so mysqld 13946 150 mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld 13946 150 mem REG 0,35 89056 2952500517 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 13946 150 mem REG 0,35 530736 2952631698 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libm-2.13.so mysqld 13946 150 mem REG 0,35 991600 2952491340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.17 mysqld 13946 150 mem REG 0,35 14768 2952631697 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libdl-2.13.so mysqld 13946 150 mem REG 0,35 35104 2952631696 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libcrypt-2.13.so mysqld 13946 150 mem REG 0,35 40656 2952513890 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 13946 150 mem REG 0,35 31744 2952631733 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/librt-2.13.so mysqld 13946 150 mem REG 0,35 92752 2952500488 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libz.so.1.2.7 mysqld 13946 150 mem REG 0,35 5464 2952513951 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 13946 150 mem REG 0,35 131107 2952631614 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libpthread-2.13.so mysqld 13946 150 mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld 13946 150 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld 13946 150 4uW REG 0,35 18874368 2952565020 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ibdata1 mysqld 13946 150 9uW REG 0,35 5242880 2952565025 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile0 mysqld 13946 150 10uW REG 0,35 5242880 2952565029 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile1 mysqld 13946 150 14u REG 0,35 35 2952564903 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSM mysqld 13946 150 15r REG 0,35 0 2952564904 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSV mysqld 13946 150 16u REG 0,35 2048 2952685667 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYI mysqld 13946 150 17u REG 0,35 328 2952685668 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYD mysqld 13946 150 18u REG 0,35 4096 2952685618 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYI mysqld 13946 150 19u REG 0,35 844 2952685619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYD mysqld 13946 150 20u REG 0,35 5120 2952564934 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYI mysqld 13946 150 21u REG 0,35 1386 2952564935 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYD mysqld 13946 150 22u REG 0,35 2048 2952685658 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYI mysqld 13946 150 23u REG 0,35 0 2952685659 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYD mysqld 13946 150 24u REG 0,35 4096 2952680279 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYI mysqld 13946 150 25u REG 0,35 0 2952680280 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYD mysqld 13946 150 26u REG 0,35 4096 2952680285 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYI mysqld 13946 150 27u REG 0,35 0 2952680286 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYD mysqld 13946 150 28u REG 0,35 1024 2952564861 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYI mysqld 13946 150 29u REG 0,35 0 2952564862 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYD mysqld 13946 150 30u REG 0,35 4096 2952685594 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYI mysqld 13946 150 31u REG 0,35 0 2952685595 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYD mysqld 13946 150 33u REG 0,35 2048 2952685654 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYI mysqld 13946 150 34u REG 0,35 0 2952685655 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYD mysqld 13946 150 37u REG 0,35 3072 2952564873 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYI mysqld 13946 150 38u REG 0,35 1120 2952564874 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYD mysqld 13946 150 39u REG 0,35 19456 2952564879 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYI mysqld 13946 150 40u REG 0,35 105986 2952564880 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYD mysqld 13946 150 41u REG 0,35 22528 2952564876 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYI mysqld 13946 150 42u REG 0,35 10476 2952564877 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYD mysqld 13946 150 43u REG 0,35 19456 2952564870 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYI mysqld 13946 150 44u REG 0,35 491964 2952564871 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYD mysqld 13946 150 45u REG 0,35 1024 2952564912 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 13946 150 46u REG 0,35 0 2952564913 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 13946 150 47u REG 0,35 2048 2952685648 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYI mysqld 13946 150 48u REG 0,35 0 2952685649 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYD mysqld 13946 150 49u REG 0,35 1024 2952680318 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYI mysqld 13946 150 50u REG 0,35 0 2952680319 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYD mysqld 13946 150 51u REG 0,35 1024 2952680340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYI mysqld 13946 150 52u REG 0,35 0 2952680341 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYD mysqld 13946 150 53u REG 0,35 1024 2952564885 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYI mysqld 13946 150 54u REG 0,35 0 2952564886 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYD mysqld 13946 150 55u REG 0,35 1024 2952564894 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 13946 150 56u REG 0,35 0 2952564895 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 13946 150 57u REG 0,35 1024 2952564882 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYI mysqld 13946 150 58u REG 0,35 0 2952564883 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYD mysqld 13946 150 59u REG 0,35 1024 2952564888 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 13946 150 60u REG 0,35 0 2952564889 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 13946 150 61u REG 0,35 1024 2952564891 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 13946 150 62u REG 0,35 0 2952564892 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 13946 150 63u REG 0,35 35 2952680337 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSM mysqld 13946 150 64r REG 0,35 0 2952680338 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSV logger 13947 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 13947 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 13947 root txt REG 0,35 19400 2952491038 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/logger logger 13947 root mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so logger 13947 root mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so logger 13947 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null 1m22.8s INFO: Running scripts pre_install 1m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_database-server'] 1m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_database-server'] 1m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_exceptions'] 1m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_exceptions'] 1m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_extras'] 1m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_extras'] 1m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_foreign_architecture'] 1m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_foreign_architecture'] 1m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'policy'] 1m22.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 1m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'policy'] 1m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'policy', 'biomaj'] 1m22.8s DUMP: biomaj: Installed: 1.2.1-1 Candidate: 1.2.1-1 Version table: *** 1.2.1-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 1m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-cache', 'policy', 'biomaj'] 1m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', '-y', 'install', 'biomaj=1.2.1-1'] 1m23.1s DUMP: Reading package lists... Building dependency tree... Reading state information... biomaj is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', '-y', 'install', 'biomaj=1.2.1-1'] 1m23.1s INFO: Running scripts post_install 1m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_install_exceptions'] 1m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_install_exceptions'] 1m23.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 1m23.9s DUMP: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 13615 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 13615 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 13615 root txt REG 0,35 106920 2952489801 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/bin/dash mysqld_sa 13615 root mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld_sa 13615 root mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld_sa 13615 root 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 1w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 10r REG 0,35 27482 2952641571 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/mysqld_safe mysqld 13946 150 cwd DIR 0,35 180 2952540362 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql mysqld 13946 150 rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld 13946 150 txt REG 0,35 12156272 2952638900 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/sbin/mysqld mysqld 13946 150 mem REG 0,35 47616 2952631718 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_files-2.13.so mysqld 13946 150 mem REG 0,35 43560 2952631723 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_nis-2.13.so mysqld 13946 150 mem REG 0,35 31584 2952631715 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_compat-2.13.so mysqld 13946 150 mem REG 0,35 89056 2952631712 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnsl-2.13.so mysqld 13946 150 mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld 13946 150 mem REG 0,35 89056 2952500517 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 13946 150 mem REG 0,35 530736 2952631698 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libm-2.13.so mysqld 13946 150 mem REG 0,35 991600 2952491340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.17 mysqld 13946 150 mem REG 0,35 14768 2952631697 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libdl-2.13.so mysqld 13946 150 mem REG 0,35 35104 2952631696 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libcrypt-2.13.so mysqld 13946 150 mem REG 0,35 40656 2952513890 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 13946 150 mem REG 0,35 31744 2952631733 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/librt-2.13.so mysqld 13946 150 mem REG 0,35 92752 2952500488 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libz.so.1.2.7 mysqld 13946 150 mem REG 0,35 5464 2952513951 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 13946 150 mem REG 0,35 131107 2952631614 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libpthread-2.13.so mysqld 13946 150 mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld 13946 150 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld 13946 150 4uW REG 0,35 18874368 2952565020 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ibdata1 mysqld 13946 150 9uW REG 0,35 5242880 2952565025 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile0 mysqld 13946 150 10uW REG 0,35 5242880 2952565029 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile1 mysqld 13946 150 14u REG 0,35 35 2952564903 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSM mysqld 13946 150 15r REG 0,35 0 2952564904 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSV mysqld 13946 150 16u REG 0,35 2048 2952685667 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYI mysqld 13946 150 17u REG 0,35 328 2952685668 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYD mysqld 13946 150 18u REG 0,35 4096 2952685618 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYI mysqld 13946 150 19u REG 0,35 844 2952685619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYD mysqld 13946 150 20u REG 0,35 5120 2952564934 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYI mysqld 13946 150 21u REG 0,35 1386 2952564935 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYD mysqld 13946 150 22u REG 0,35 2048 2952685658 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYI mysqld 13946 150 23u REG 0,35 0 2952685659 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYD mysqld 13946 150 24u REG 0,35 4096 2952680279 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYI mysqld 13946 150 25u REG 0,35 0 2952680280 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYD mysqld 13946 150 26u REG 0,35 4096 2952680285 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYI mysqld 13946 150 27u REG 0,35 0 2952680286 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYD mysqld 13946 150 28u REG 0,35 1024 2952564861 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYI mysqld 13946 150 29u REG 0,35 0 2952564862 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYD mysqld 13946 150 30u REG 0,35 4096 2952685594 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYI mysqld 13946 150 31u REG 0,35 0 2952685595 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYD mysqld 13946 150 33u REG 0,35 2048 2952685654 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYI mysqld 13946 150 34u REG 0,35 0 2952685655 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYD mysqld 13946 150 37u REG 0,35 3072 2952564873 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYI mysqld 13946 150 38u REG 0,35 1120 2952564874 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYD mysqld 13946 150 39u REG 0,35 19456 2952564879 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYI mysqld 13946 150 40u REG 0,35 105986 2952564880 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYD mysqld 13946 150 41u REG 0,35 22528 2952564876 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYI mysqld 13946 150 42u REG 0,35 10476 2952564877 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYD mysqld 13946 150 43u REG 0,35 19456 2952564870 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYI mysqld 13946 150 44u REG 0,35 491964 2952564871 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYD mysqld 13946 150 45u REG 0,35 1024 2952564912 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 13946 150 46u REG 0,35 0 2952564913 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 13946 150 47u REG 0,35 2048 2952685648 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYI mysqld 13946 150 48u REG 0,35 0 2952685649 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYD mysqld 13946 150 49u REG 0,35 1024 2952680318 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYI mysqld 13946 150 50u REG 0,35 0 2952680319 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYD mysqld 13946 150 51u REG 0,35 1024 2952680340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYI mysqld 13946 150 52u REG 0,35 0 2952680341 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYD mysqld 13946 150 53u REG 0,35 1024 2952564885 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYI mysqld 13946 150 54u REG 0,35 0 2952564886 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYD mysqld 13946 150 55u REG 0,35 1024 2952564894 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 13946 150 56u REG 0,35 0 2952564895 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 13946 150 57u REG 0,35 1024 2952564882 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYI mysqld 13946 150 58u REG 0,35 0 2952564883 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYD mysqld 13946 150 59u REG 0,35 1024 2952564888 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 13946 150 60u REG 0,35 0 2952564889 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 13946 150 61u REG 0,35 1024 2952564891 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 13946 150 62u REG 0,35 0 2952564892 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 13946 150 63u REG 0,35 35 2952680337 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSM mysqld 13946 150 64r REG 0,35 0 2952680338 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSV logger 13947 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 13947 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 13947 root txt REG 0,35 19400 2952491038 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/logger logger 13947 root mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so logger 13947 root mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so logger 13947 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null 1m23.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 1m23.9s ERROR: WARN: Processes are running inside chroot: COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME mysqld_sa 13615 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 13615 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld_sa 13615 root txt REG 0,35 106920 2952489801 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/bin/dash mysqld_sa 13615 root mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld_sa 13615 root mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld_sa 13615 root 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 1w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld_sa 13615 root 10r REG 0,35 27482 2952641571 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/mysqld_safe mysqld 13946 150 cwd DIR 0,35 180 2952540362 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql mysqld 13946 150 rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X mysqld 13946 150 txt REG 0,35 12156272 2952638900 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/sbin/mysqld mysqld 13946 150 mem REG 0,35 47616 2952631718 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_files-2.13.so mysqld 13946 150 mem REG 0,35 43560 2952631723 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_nis-2.13.so mysqld 13946 150 mem REG 0,35 31584 2952631715 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnss_compat-2.13.so mysqld 13946 150 mem REG 0,35 89056 2952631712 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libnsl-2.13.so mysqld 13946 150 mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so mysqld 13946 150 mem REG 0,35 89056 2952500517 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libgcc_s.so.1 mysqld 13946 150 mem REG 0,35 530736 2952631698 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libm-2.13.so mysqld 13946 150 mem REG 0,35 991600 2952491340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.17 mysqld 13946 150 mem REG 0,35 14768 2952631697 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libdl-2.13.so mysqld 13946 150 mem REG 0,35 35104 2952631696 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libcrypt-2.13.so mysqld 13946 150 mem REG 0,35 40656 2952513890 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libwrap.so.0.7.6 mysqld 13946 150 mem REG 0,35 31744 2952631733 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/librt-2.13.so mysqld 13946 150 mem REG 0,35 92752 2952500488 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libz.so.1.2.7 mysqld 13946 150 mem REG 0,35 5464 2952513951 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libaio.so.1.0.1 mysqld 13946 150 mem REG 0,35 131107 2952631614 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libpthread-2.13.so mysqld 13946 150 mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so mysqld 13946 150 0r CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null mysqld 13946 150 4uW REG 0,35 18874368 2952565020 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ibdata1 mysqld 13946 150 9uW REG 0,35 5242880 2952565025 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile0 mysqld 13946 150 10uW REG 0,35 5242880 2952565029 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/ib_logfile1 mysqld 13946 150 14u REG 0,35 35 2952564903 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSM mysqld 13946 150 15r REG 0,35 0 2952564904 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/general_log.CSV mysqld 13946 150 16u REG 0,35 2048 2952685667 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYI mysqld 13946 150 17u REG 0,35 328 2952685668 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/user.MYD mysqld 13946 150 18u REG 0,35 4096 2952685618 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYI mysqld 13946 150 19u REG 0,35 844 2952685619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proc.MYD mysqld 13946 150 20u REG 0,35 5120 2952564934 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYI mysqld 13946 150 21u REG 0,35 1386 2952564935 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/proxies_priv.MYD mysqld 13946 150 22u REG 0,35 2048 2952685658 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYI mysqld 13946 150 23u REG 0,35 0 2952685659 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/db.MYD mysqld 13946 150 24u REG 0,35 4096 2952680279 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYI mysqld 13946 150 25u REG 0,35 0 2952680280 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/tables_priv.MYD mysqld 13946 150 26u REG 0,35 4096 2952680285 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYI mysqld 13946 150 27u REG 0,35 0 2952680286 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/columns_priv.MYD mysqld 13946 150 28u REG 0,35 1024 2952564861 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYI mysqld 13946 150 29u REG 0,35 0 2952564862 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/servers.MYD mysqld 13946 150 30u REG 0,35 4096 2952685594 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYI mysqld 13946 150 31u REG 0,35 0 2952685595 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/procs_priv.MYD mysqld 13946 150 33u REG 0,35 2048 2952685654 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYI mysqld 13946 150 34u REG 0,35 0 2952685655 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/host.MYD mysqld 13946 150 37u REG 0,35 3072 2952564873 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYI mysqld 13946 150 38u REG 0,35 1120 2952564874 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_category.MYD mysqld 13946 150 39u REG 0,35 19456 2952564879 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYI mysqld 13946 150 40u REG 0,35 105986 2952564880 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_keyword.MYD mysqld 13946 150 41u REG 0,35 22528 2952564876 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYI mysqld 13946 150 42u REG 0,35 10476 2952564877 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_relation.MYD mysqld 13946 150 43u REG 0,35 19456 2952564870 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYI mysqld 13946 150 44u REG 0,35 491964 2952564871 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/help_topic.MYD mysqld 13946 150 45u REG 0,35 1024 2952564912 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYI mysqld 13946 150 46u REG 0,35 0 2952564913 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/ndb_binlog_index.MYD mysqld 13946 150 47u REG 0,35 2048 2952685648 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYI mysqld 13946 150 48u REG 0,35 0 2952685649 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/event.MYD mysqld 13946 150 49u REG 0,35 1024 2952680318 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYI mysqld 13946 150 50u REG 0,35 0 2952680319 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/func.MYD mysqld 13946 150 51u REG 0,35 1024 2952680340 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYI mysqld 13946 150 52u REG 0,35 0 2952680341 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/plugin.MYD mysqld 13946 150 53u REG 0,35 1024 2952564885 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYI mysqld 13946 150 54u REG 0,35 0 2952564886 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone.MYD mysqld 13946 150 55u REG 0,35 1024 2952564894 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYI mysqld 13946 150 56u REG 0,35 0 2952564895 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_leap_second.MYD mysqld 13946 150 57u REG 0,35 1024 2952564882 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYI mysqld 13946 150 58u REG 0,35 0 2952564883 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_name.MYD mysqld 13946 150 59u REG 0,35 1024 2952564888 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYI mysqld 13946 150 60u REG 0,35 0 2952564889 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition.MYD mysqld 13946 150 61u REG 0,35 1024 2952564891 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYI mysqld 13946 150 62u REG 0,35 0 2952564892 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/time_zone_transition_type.MYD mysqld 13946 150 63u REG 0,35 35 2952680337 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSM mysqld 13946 150 64r REG 0,35 0 2952680338 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/var/lib/mysql/mysql/slow_log.CSV logger 13947 root cwd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 13947 root rtd DIR 0,35 480 2952489487 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X logger 13947 root txt REG 0,35 19400 2952491038 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/usr/bin/logger logger 13947 root mem REG 0,35 1607696 2952631619 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/libc-2.13.so logger 13947 root mem REG 0,35 136936 2952631616 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/lib/x86_64-linux-gnu/ld-2.13.so logger 13947 root 2w CHR 1,3 0t0 2952489848 /srv/piuparts.debian.org/../piuparts-workspace//tmpttMO7X/dev/null 1m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m23.9s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed ant ant 1.8.2-4 install ok installed ant-contrib ant-contrib 1.0~b3+svn177-5 install ok installed ant-optional ant-optional 1.8.2-4 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u4 install ok installed biomaj biomaj 1.2.1-1 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed ca-certificates ca-certificates 20130119+deb7u2 install ok installed ca-certificates-java ca-certificates-java 20121112+nmu2 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed default-jre default-jre 1:1.7-47+deb7u2 install ok installed default-jre-headless default-jre-headless 1:1.7-47+deb7u2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed fontconfig fontconfig 2.9.0-7.1+deb7u1 install ok installed fontconfig-config fontconfig-config 2.9.0-7.1+deb7u1 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u9 install ok installed gpgv gpgv 1.4.12-7+deb7u9 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed java-common java-common 0.47+deb7u2 install ok installed junit4 junit4 4.10-3 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libaio1:amd64 libaio1 0.3.109-3 install ok installed libapache-pom-java libapache-pom-java 10-2 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libasound2:amd64 libasound2 1.0.25-4 install ok installed libasyncns0:amd64 libasyncns0 0.8-4 install ok installed libatk-wrapper-java libatk-wrapper-java 0.30.4-3 install ok installed libatk-wrapper-java-jni:amd64 libatk-wrapper-java-jni 0.30.4-3 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.4.0-2 install ok installed libatk1.0-data libatk1.0-data 2.4.0-2 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.31-2 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.31-2 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.31-2 install ok installed libaxis-java libaxis-java 1.4-16.2+deb7u1 install ok installed libbackport-util-concurrent-java libbackport-util-concurrent-java 3.1-3 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u12 install ok installed libc6:amd64 libc6 2.13-38+deb7u12 install ok installed libcairo2:amd64 libcairo2 1.12.2-3+deb7u1 install ok installed libcap2:amd64 libcap2 1:2.22-1.2 install ok installed libclass-isa-perl libclass-isa-perl 0.36-3 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libcommons-cli-java libcommons-cli-java 1.2-3 install ok installed libcommons-codec-java libcommons-codec-java 1.6-1 install ok installed libcommons-dbcp-java libcommons-dbcp-java 1.4-3 install ok installed libcommons-discovery-java libcommons-discovery-java 0.5-3 install ok installed libcommons-httpclient-java libcommons-httpclient-java 3.1-10.2+deb7u2 install ok installed libcommons-lang-java libcommons-lang-java 2.6-3 install ok installed libcommons-logging-java libcommons-logging-java 1.1.1-9 install ok installed libcommons-net2-java libcommons-net2-java 2.2-2 install ok installed libcommons-parent-java libcommons-parent-java 22-2 install ok installed libcommons-pool-java libcommons-pool-java 1.5.6-1 install ok installed libcups2:amd64 libcups2 1.5.3-5+deb7u7 install ok installed libdatrie1:amd64 libdatrie1 0.2.5-3 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5+deb7u1 install ok installed libdbd-mysql-perl libdbd-mysql-perl 4.021-1+deb7u3 install ok installed libdbi-perl libdbi-perl 1.622-1+deb7u1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.6.8-1+deb7u6 install ok installed libdom4j-java libdom4j-java 1.6.1+dfsg.2-6 install ok installed libdrm2:amd64 libdrm2 2.4.40-1~deb7u2 install ok installed libexpat1:amd64 libexpat1 2.1.0-1+deb7u5 install ok installed libffi5:amd64 libffi5 3.0.10-3+deb7u2 install ok installed libflac8:amd64 libflac8 1.2.1-6+deb7u1 install ok installed libfontconfig1:amd64 libfontconfig1 2.9.0-7.1+deb7u1 install ok installed libfreetype6:amd64 libfreetype6 2.4.9-1.1+deb7u7 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libgcrypt11:amd64 libgcrypt11 1.5.0-5+deb7u6 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-11 install ok installed libgdk-pixbuf2.0-0:amd64 libgdk-pixbuf2.0-0 2.26.1-1+deb7u8 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.26.1-1+deb7u8 install ok installed libgif4 libgif4 4.1.6-10+deb7u1 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 8.0.5-4+deb7u2 install ok installed libglapi-mesa:amd64 libglapi-mesa 8.0.5-4+deb7u2 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.33.12+really2.32.4-5 install ok installed libgnuinet-java libgnuinet-java 1.1.2-2 install ok installed libgnujaf-java libgnujaf-java 1.1.1-8 install ok installed libgnumail-java libgnumail-java 1.1.2-7 install ok installed libgnutls26:amd64 libgnutls26 2.12.20-8+deb7u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.10-3.1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.10.1+dfsg-5+deb7u9 install ok installed libgtk2.0-0:amd64 libgtk2.0-0 2.24.10-2 install ok installed libgtk2.0-common libgtk2.0-common 2.24.10-2 install ok installed libhamcrest-java libhamcrest-java 1.2-2 install ok installed libhsqldb-java libhsqldb-java 1.8.0.10+dfsg-0+deb7u1 install ok installed libice6:amd64 libice6 2:1.0.8-2 install ok installed libjasper1:amd64 libjasper1 1.900.1-13+deb7u6 install ok installed libjava-xmlbuilder-java libjava-xmlbuilder-java 0.4-2 install ok installed libjaxen-java libjaxen-java 1.1.3-1 install ok installed libjaxme-java libjaxme-java 0.5.2+dfsg-6 install ok installed libjbig0:amd64 libjbig0 2.0-2+deb7u1 install ok installed libjcommon-java libjcommon-java 1.0.16-2 install ok installed libjdom1-java libjdom1-java 1.1.2+dfsg-2 install ok installed libjets3t-java libjets3t-java 0.8.1+dfsg-1 install ok installed libjgoodies-forms-java libjgoodies-forms-java 1.3.0-2 install ok installed libjpeg8:amd64 libjpeg8 8d-1+deb7u1 install ok installed libjsch-java libjsch-java 0.1.42-2+deb7u1 install ok installed libjson0:amd64 libjson0 0.10-1.2 install ok installed libk5crypto3:amd64 libk5crypto3 1.10.1+dfsg-5+deb7u9 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.5-3+deb7u1 install ok installed libkrb5-3:amd64 libkrb5-3 1.10.1+dfsg-5+deb7u9 install ok installed libkrb5support0:amd64 libkrb5support0 1.10.1+dfsg-5+deb7u9 install ok installed liblcms2-2:amd64 liblcms2-2 2.2+git20110628-2.2+deb7u2 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblog4j1.2-java liblog4j1.2-java 1.2.16-3 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libmysql-java libmysql-java 5.1.42-1~deb7u1 install ok installed libmysqlclient18:amd64 libmysqlclient18 5.5.59-0+deb7u1 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libnspr4:amd64 libnspr4 2:4.12-1+deb7u1 install ok installed libnss3:amd64 libnss3 2:3.26-1+debu7u5 install ok installed libogg0:amd64 libogg0 1.3.0-4 install ok installed liboro-java liboro-java 2.0.8a-8 install ok installed libp11-kit0:amd64 libp11-kit0 0.12-3 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libpango1.0-0:amd64 libpango1.0-0 1.30.0-1 install ok installed libpcre3:amd64 libpcre3 1:8.30-5 install ok installed libpcsclite1:amd64 libpcsclite1 1.8.4-1+deb7u2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.26.0-4+deb7u2 install ok installed libpng12-0:amd64 libpng12-0 1.2.49-1+deb7u2 install ok installed libpulse0:amd64 libpulse0 2.0-6.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libregexp-java libregexp-java 1.5-3 install ok installed libsaxonb-java libsaxonb-java 9.1.0.8-1 install ok installed libsctp1 libsctp1 1.0.11+dfsg-2 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libservlet2.5-java libservlet2.5-java 6.0.45+dfsg-1~deb7u5 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libsm6:amd64 libsm6 2:1.2.1-2 install ok installed libsndfile1:amd64 libsndfile1 1.0.25-9.1+deb7u4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.7.13-1+deb7u4 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb7u3 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libswitch-perl libswitch-perl 2.16-2 install ok installed libtasn1-3:amd64 libtasn1-3 2.13-2+deb7u5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libthai-data libthai-data 0.1.18-2 install ok installed libthai0:amd64 libthai0 0.1.18-2 install ok installed libtiff4:amd64 libtiff4 3.9.6-11+deb7u9 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed libvorbis0a:amd64 libvorbis0a 1.3.2-1.3 install ok installed libvorbisenc2:amd64 libvorbisenc2 1.3.2-1.3 install ok installed libwrap0:amd64 libwrap0 7.6.q-24 install ok installed libwsdl4j-java libwsdl4j-java 1.6.2-4 install ok installed libx11-6:amd64 libx11-6 2:1.5.0-1+deb7u4 install ok installed libx11-data libx11-data 2:1.5.0-1+deb7u4 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.5.0-1+deb7u4 install ok installed libxau6:amd64 libxau6 1:1.0.7-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.8.1-2+deb7u1 install ok installed libxcb-render0:amd64 libxcb-render0 1.8.1-2+deb7u1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.8.1-2+deb7u1 install ok installed libxcb1:amd64 libxcb1 1.8.1-2+deb7u1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.3-2 install ok installed libxcursor1:amd64 libxcursor1 1:1.1.13-1+deb7u2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.3-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1 install ok installed libxerces2-java libxerces2-java 2.11.0-6 install ok installed libxext6:amd64 libxext6 2:1.3.1-2+deb7u1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0-4+deb7u2 install ok installed libxft2:amd64 libxft2 2.3.1-1 install ok installed libxi6:amd64 libxi6 2:1.6.1-1+deb7u3 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.2-1+deb7u1 install ok installed libxml-commons-external-java libxml-commons-external-java 1.4.01-2 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-7 install ok installed libxml2:amd64 libxml2 2.8.0+dfsg1-7+wheezy12 install ok installed libxom-java libxom-java 1.2.1-3 install ok installed libxpp2-java libxpp2-java 2.1.10-7 install ok installed libxpp3-java libxpp3-java 1.1.4c-2 install ok installed libxrandr2:amd64 libxrandr2 2:1.3.2-2+deb7u2 install ok installed libxrender1:amd64 libxrender1 1:0.9.7-1+deb7u3 install ok installed libxtst6:amd64 libxtst6 2:1.2.1-1+deb7u2 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.2-1+deb7u1 install ok installed login login 1:4.1.5.1-1+deb7u1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u12 install ok installed mysql-client-5.5 mysql-client-5.5 5.5.59-0+deb7u1 install ok installed mysql-common mysql-common 5.5.59-0+deb7u1 install ok installed mysql-server mysql-server 5.5.59-0+deb7u1 install ok installed mysql-server-5.5 mysql-server-5.5 5.5.59-0+deb7u1 install ok installed mysql-server-core-5.5 mysql-server-core-5.5 5.5.59-0+deb7u1 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed openjdk-6-jre:amd64 openjdk-6-jre 6b38-1.13.10-1~deb7u1 install ok installed openjdk-6-jre-headless:amd64 openjdk-6-jre-headless 6b38-1.13.10-1~deb7u1 install ok installed openjdk-6-jre-lib openjdk-6-jre-lib 6b38-1.13.10-1~deb7u1 install ok installed openjdk-7-jre:amd64 openjdk-7-jre 7u151-2.6.11-2~deb7u3 install ok installed openjdk-7-jre-headless:amd64 openjdk-7-jre-headless 7u151-2.6.11-2~deb7u3 install ok installed openssl openssl 1.0.1t-1+deb7u3 install ok installed passwd passwd 1:4.1.5.1-1+deb7u1 install ok installed perl perl 5.14.2-21+deb7u5 install ok installed perl-base perl-base 5.14.2-21+deb7u5 install ok installed perl-modules perl-modules 5.14.2-21+deb7u5 install ok installed psmisc psmisc 22.19-1+deb7u1 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7+deb7u1 install ok installed shared-mime-info shared-mime-info 1.0-1+b1 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1+deb7u1 install ok installed ttf-dejavu-core ttf-dejavu-core 2.33-3 install ok installed tzdata tzdata 2018c-0+deb7u1 install ok installed tzdata-java tzdata-java 2018c-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed x11-common x11-common 1:7.7+3~deb7u1 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 1m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m24.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpttMO7X', '-ac', '--ignore-obsolete'] 1m26.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpttMO7X', '-ac', '--ignore-obsolete'] 1m26.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m26.2s DUMP: 0.15.1 1m26.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m26.2s INFO: Running adequate version 0.15.1 now. 1m26.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'biomaj'] 1m26.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'biomaj'] 1m26.2s INFO: Running scripts pre_remove 1m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_remove_exceptions'] 1m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/pre_remove_exceptions'] 1m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', 'remove', 'java-common', 'libgdk-pixbuf2.0-0:amd64', 'libgssapi-krb5-2:amd64', 'libjbig0:amd64', 'libdbi-perl', 'libfreetype6:amd64', 'mysql-common', 'libatk-wrapper-java', 'libgnuinet-java', 'libdbus-1-3:amd64', 'libdatrie1:amd64', 'liboro-java', 'libgdbm3:amd64', 'fontconfig', 'libcap2:amd64', 'libgtk2.0-0:amd64', 'libxom-java', 'libnspr4:amd64', 'libdom4j-java', 'libjcommon-java', 'ant', 'libxdamage1:amd64', 'libvorbisenc2:amd64', 'libgdk-pixbuf2.0-common', 'libkrb5-3:amd64', 'mysql-client-5.5', 'libjgoodies-forms-java', 'ca-certificates', 'libglib2.0-0:amd64', 'libpng12-0:amd64', 'libjasper1:amd64', 'mysql-server-core-5.5', 'libaio1:amd64', 'libp11-kit0:amd64', 'libmysql-java', 'libcommons-httpclient-java', 'libatk1.0-0:amd64', 'libcommons-logging-java', 'psmisc', 'libcommons-discovery-java', 'libcommons-parent-java', 'libavahi-client3:amd64', 'libjson0:amd64', 'shared-mime-info', 'libxerces2-java', 'libcommons-dbcp-java', 'libxi6:amd64', 'libgcrypt11:amd64', 'libx11-6:amd64', 'libk5crypto3:amd64', 'mysql-server-5.5', 'libjpeg8:amd64', 'junit4', 'libdrm2:amd64', 'libcommons-net2-java', 'libcommons-lang-java', 'libjdom1-java', 'libswitch-perl', 'libsaxonb-java', 'libsndfile1:amd64', 'libaxis-java', 'libxtst6:amd64', 'liblog4j1.2-java', 'ant-contrib', 'libxext6:amd64', 'libthai0:amd64', 'libcommons-codec-java', 'libxdmcp6:amd64', 'libcommons-pool-java', 'libasyncns0:amd64', 'libasound2:amd64', 'libpango1.0-0:amd64', 'libflac8:amd64', 'libgl1-mesa-glx:amd64', 'openjdk-6-jre-lib', 'libxpp2-java', 'libxml2:amd64', 'libcommons-cli-java', 'libxcomposite1:amd64', 'libxrandr2:amd64', 'ca-certificates-java', 'openssl', 'fontconfig-config', 'libxinerama1:amd64', 'libxft2:amd64', 'libapache-pom-java', 'libx11-data', 'openjdk-7-jre-headless:amd64', 'libthai-data', 'libglapi-mesa:amd64', 'libpulse0:amd64', 'libfontconfig1:amd64', 'openjdk-6-jre-headless:amd64', 'mysql-server', 'libtasn1-3:amd64', 'libsm6:amd64', 'ant-optional', 'libwsdl4j-java', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libpcre3:amd64', 'liblcms2-2:amd64', 'x11-common', 'libxpp3-java', 'libssl1.0.0:amd64', 'libxcb-glx0:amd64', 'libservlet2.5-java', 'libxrender1:amd64', 'libgpg-error0:amd64', 'tzdata-java', 'libxml-commons-resolver1.1-java', 'libhamcrest-java', 'libxcb1:amd64', 'ttf-dejavu-core', 'libice6:amd64', 'libbackport-util-concurrent-java', 'libatk-wrapper-java-jni:amd64', 'libxcursor1:amd64', 'libavahi-common3:amd64', 'libxau6:amd64', 'libxcb-render0:amd64', 'libjava-xmlbuilder-java', 'libcairo2:amd64', 'openjdk-6-jre:amd64', 'default-jre-headless', 'libgnujaf-java', 'libffi5:amd64', 'libvorbis0a:amd64', 'libjaxen-java', 'libkeyutils1:amd64', 'libpixman-1-0:amd64', 'openjdk-7-jre:amd64', 'libhsqldb-java', 'perl-modules', 'libtiff4:amd64', 'default-jre', 'libjets3t-java', 'libxfixes3:amd64', 'libsctp1', 'libgnumail-java', 'libgtk2.0-common', 'libpcsclite1:amd64', 'libxxf86vm1:amd64', 'libatk1.0-data', 'libx11-xcb1:amd64', 'libexpat1:amd64', 'libjsch-java', 'libxcb-shm0:amd64', 'perl', 'libmysqlclient18:amd64', 'libwrap0:amd64', 'libdbd-mysql-perl', 'libnss3:amd64', 'libogg0:amd64', 'libgnutls26:amd64', 'libxml-commons-external-java', 'libgif4', 'libavahi-common-data:amd64', 'libkrb5support0:amd64', 'libjaxme-java', 'libcups2:amd64', 'libregexp-java', 'biomaj'] 1m31.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ant ant-contrib ant-optional biomaj ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig fontconfig-config java-common junit4 libaio1 libapache-pom-java libasound2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libbackport-util-concurrent-java libcairo2 libcap2 libclass-isa-perl libcommons-cli-java libcommons-codec-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-lang-java libcommons-logging-java libcommons-net2-java libcommons-parent-java libcommons-pool-java libcups2 libdatrie1 libdbd-mysql-perl libdbi-perl libdbus-1-3 libdom4j-java libdrm2 libexpat1 libffi5 libflac8 libfontconfig1 libfreetype6 libgcrypt11 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif4 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgnuinet-java libgnujaf-java libgnumail-java libgnutls26 libgpg-error0 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libhamcrest-java libhsqldb-java libice6 libjasper1 libjava-xmlbuilder-java libjaxen-java libjaxme-java libjbig0 libjcommon-java libjdom1-java libjets3t-java libjgoodies-forms-java libjpeg8 libjsch-java libjson0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblog4j1.2-java libmysql-java libmysqlclient18 libnspr4 libnss3 libogg0 liboro-java libp11-kit0 libpango1.0-0 libpcre3 libpcsclite1 libpixman-1-0 libpng12-0 libpulse0 libregexp-java libsaxonb-java libsctp1 libservlet2.5-java libsm6 libsndfile1 libsqlite3-0 libssl1.0.0 libswitch-perl libtasn1-3 libthai-data libthai0 libtiff4 libvorbis0a libvorbisenc2 libwrap0 libwsdl4j-java libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-glx0 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxom-java libxpp2-java libxpp3-java libxrandr2 libxrender1 libxtst6 libxxf86vm1 mysql-client-5.5 mysql-common mysql-server mysql-server-5.5 mysql-server-core-5.5 openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib openjdk-7-jre openjdk-7-jre-headless openssl perl perl-modules psmisc shared-mime-info ttf-dejavu-core tzdata-java x11-common 0 upgraded, 0 newly installed, 163 to remove and 0 not upgraded. After this operation, 361 MB disk space will be freed. (Reading database ... 13362 files and directories currently installed.) Removing biomaj ... Warning, BioMAJ database for MySQL is not deleted by process removal. Removing ant-optional ... Removing ant ... Removing ant-contrib ... Removing default-jre ... Removing openjdk-7-jre:amd64 ... Removing junit4 ... Removing default-jre-headless ... Removing openjdk-7-jre-headless:amd64 ... Removing openjdk-6-jre:amd64 ... Removing libatk-wrapper-java-jni:amd64 ... Removing libgtk2.0-0:amd64 ... Removing libpango1.0-0:amd64 ... Removing fontconfig ... Removing libcairo2:amd64 ... Removing libxft2:amd64 ... Removing libfontconfig1:amd64 ... Removing fontconfig-config ... Removing mysql-server ... Removing mysql-server-5.5 ... Stopping MySQL database server: mysqld. Removing mysql-server-core-5.5 ... Removing libaio1:amd64 ... Removing libjets3t-java ... Removing libaxis-java ... Removing libcommons-discovery-java ... Removing libcommons-httpclient-java ... Removing libcommons-logging-java ... Removing libcommons-cli-java ... Removing libcommons-lang-java ... Removing libcommons-parent-java ... Removing libapache-pom-java ... Removing libasound2:amd64 ... Removing libpulse0:amd64 ... Removing libasyncns0:amd64 ... Removing libatk-wrapper-java ... Removing libatk1.0-0:amd64 ... Removing libatk1.0-data ... Removing libsaxonb-java ... Removing libdom4j-java ... Removing libbackport-util-concurrent-java ... Removing libcap2:amd64 ... Removing mysql-client-5.5 ... Removing libdbd-mysql-perl ... Removing libdbi-perl ... Removing libjaxme-java ... Removing libcommons-codec-java ... Removing libcommons-dbcp-java ... Removing libcommons-net2-java ... Removing libcommons-pool-java ... Removing libthai0:amd64 ... Removing libdatrie1:amd64 ... Removing libgl1-mesa-glx:amd64 ... Removing libdrm2:amd64 ... Removing libexpat1:amd64 ... Removing libgdk-pixbuf2.0-0:amd64 ... Removing shared-mime-info ... Removing libglib2.0-0:amd64 ... Removing libffi5:amd64 ... Removing libsndfile1:amd64 ... Removing libflac8:amd64 ... Removing libgdk-pixbuf2.0-common ... Removing libgif4 ... Removing libglapi-mesa:amd64 ... Removing libgnumail-java ... Removing libgnuinet-java ... Removing libgnujaf-java ... Removing libgtk2.0-common ... Removing libhamcrest-java ... Removing libhsqldb-java ... Removing libsm6:amd64 ... Removing libice6:amd64 ... Removing libjasper1:amd64 ... Removing libjava-xmlbuilder-java ... Removing libxom-java ... Removing libjdom1-java ... Removing libjaxen-java ... Removing libtiff4:amd64 ... Removing libjbig0:amd64 ... Removing libjcommon-java ... Removing libjgoodies-forms-java ... Removing libjsch-java ... Removing libjson0:amd64 ... Removing liblog4j1.2-java ... Removing libmysql-java ... Removing libmysqlclient18:amd64 ... Removing libvorbisenc2:amd64 ... Removing libvorbis0a:amd64 ... Removing libogg0:amd64 ... Removing liboro-java ... Removing libpcre3:amd64 ... Removing libpixman-1-0:amd64 ... Removing libpng12-0:amd64 ... Removing libregexp-java ... Removing libsctp1 ... Removing libservlet2.5-java ... Removing libthai-data ... Removing libwrap0:amd64 ... Removing libwsdl4j-java ... Removing libxtst6:amd64 ... Removing libxrandr2:amd64 ... Removing libxcursor1:amd64 ... Removing libxrender1:amd64 ... Removing libxi6:amd64 ... Removing libxdamage1:amd64 ... Removing libxfixes3:amd64 ... Removing libx11-xcb1:amd64 ... Removing libxxf86vm1:amd64 ... Removing libxinerama1:amd64 ... Removing libxext6:amd64 ... Removing libxcomposite1:amd64 ... Removing libx11-6:amd64 ... Removing libx11-data ... Removing libxcb-shm0:amd64 ... Removing libxcb-render0:amd64 ... Removing libxcb-glx0:amd64 ... Removing libxcb1:amd64 ... Removing libxau6:amd64 ... Removing libxdmcp6:amd64 ... Removing libxerces2-java ... Removing libxml-commons-external-java ... Removing libxml-commons-resolver1.1-java ... Removing libxml2:amd64 ... Removing libxpp2-java ... Removing libxpp3-java ... Removing mysql-common ... Removing psmisc ... Removing ttf-dejavu-core ... Removing x11-common ... invoke-rc.d: policy-rc.d denied execution of stop. Removing openjdk-6-jre-lib ... Removing perl ... Removing perl-modules ... Removing libswitch-perl ... Removing libclass-isa-perl ... Removing libgdbm3:amd64 ... Removing ca-certificates-java ... Removing openjdk-6-jre-headless:amd64 ... Removing ca-certificates ... Removing dangling symlinks from /etc/ssl/certs... done. Removing java-common ... Removing libcups2:amd64 ... Removing libavahi-client3:amd64 ... Removing libavahi-common3:amd64 ... Removing libavahi-common-data:amd64 ... Removing libdbus-1-3:amd64 ... Removing libfreetype6:amd64 ... Removing libgnutls26:amd64 ... Removing libgcrypt11:amd64 ... Removing libgpg-error0:amd64 ... Removing libgssapi-krb5-2:amd64 ... Removing libjpeg8:amd64 ... Removing libkrb5-3:amd64 ... Removing libk5crypto3:amd64 ... Removing libkrb5support0:amd64 ... Removing libkeyutils1:amd64 ... Removing liblcms2-2:amd64 ... Removing libnss3:amd64 ... Removing libnspr4:amd64 ... Removing libp11-kit0:amd64 ... Removing libpcsclite1:amd64 ... Removing libsqlite3-0:amd64 ... Removing openssl ... Removing libssl1.0.0:amd64 ... Removing libtasn1-3:amd64 ... Removing tzdata-java ... 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', 'remove', 'java-common', 'libgdk-pixbuf2.0-0:amd64', 'libgssapi-krb5-2:amd64', 'libjbig0:amd64', 'libdbi-perl', 'libfreetype6:amd64', 'mysql-common', 'libatk-wrapper-java', 'libgnuinet-java', 'libdbus-1-3:amd64', 'libdatrie1:amd64', 'liboro-java', 'libgdbm3:amd64', 'fontconfig', 'libcap2:amd64', 'libgtk2.0-0:amd64', 'libxom-java', 'libnspr4:amd64', 'libdom4j-java', 'libjcommon-java', 'ant', 'libxdamage1:amd64', 'libvorbisenc2:amd64', 'libgdk-pixbuf2.0-common', 'libkrb5-3:amd64', 'mysql-client-5.5', 'libjgoodies-forms-java', 'ca-certificates', 'libglib2.0-0:amd64', 'libpng12-0:amd64', 'libjasper1:amd64', 'mysql-server-core-5.5', 'libaio1:amd64', 'libp11-kit0:amd64', 'libmysql-java', 'libcommons-httpclient-java', 'libatk1.0-0:amd64', 'libcommons-logging-java', 'psmisc', 'libcommons-discovery-java', 'libcommons-parent-java', 'libavahi-client3:amd64', 'libjson0:amd64', 'shared-mime-info', 'libxerces2-java', 'libcommons-dbcp-java', 'libxi6:amd64', 'libgcrypt11:amd64', 'libx11-6:amd64', 'libk5crypto3:amd64', 'mysql-server-5.5', 'libjpeg8:amd64', 'junit4', 'libdrm2:amd64', 'libcommons-net2-java', 'libcommons-lang-java', 'libjdom1-java', 'libswitch-perl', 'libsaxonb-java', 'libsndfile1:amd64', 'libaxis-java', 'libxtst6:amd64', 'liblog4j1.2-java', 'ant-contrib', 'libxext6:amd64', 'libthai0:amd64', 'libcommons-codec-java', 'libxdmcp6:amd64', 'libcommons-pool-java', 'libasyncns0:amd64', 'libasound2:amd64', 'libpango1.0-0:amd64', 'libflac8:amd64', 'libgl1-mesa-glx:amd64', 'openjdk-6-jre-lib', 'libxpp2-java', 'libxml2:amd64', 'libcommons-cli-java', 'libxcomposite1:amd64', 'libxrandr2:amd64', 'ca-certificates-java', 'openssl', 'fontconfig-config', 'libxinerama1:amd64', 'libxft2:amd64', 'libapache-pom-java', 'libx11-data', 'openjdk-7-jre-headless:amd64', 'libthai-data', 'libglapi-mesa:amd64', 'libpulse0:amd64', 'libfontconfig1:amd64', 'openjdk-6-jre-headless:amd64', 'mysql-server', 'libtasn1-3:amd64', 'libsm6:amd64', 'ant-optional', 'libwsdl4j-java', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libpcre3:amd64', 'liblcms2-2:amd64', 'x11-common', 'libxpp3-java', 'libssl1.0.0:amd64', 'libxcb-glx0:amd64', 'libservlet2.5-java', 'libxrender1:amd64', 'libgpg-error0:amd64', 'tzdata-java', 'libxml-commons-resolver1.1-java', 'libhamcrest-java', 'libxcb1:amd64', 'ttf-dejavu-core', 'libice6:amd64', 'libbackport-util-concurrent-java', 'libatk-wrapper-java-jni:amd64', 'libxcursor1:amd64', 'libavahi-common3:amd64', 'libxau6:amd64', 'libxcb-render0:amd64', 'libjava-xmlbuilder-java', 'libcairo2:amd64', 'openjdk-6-jre:amd64', 'default-jre-headless', 'libgnujaf-java', 'libffi5:amd64', 'libvorbis0a:amd64', 'libjaxen-java', 'libkeyutils1:amd64', 'libpixman-1-0:amd64', 'openjdk-7-jre:amd64', 'libhsqldb-java', 'perl-modules', 'libtiff4:amd64', 'default-jre', 'libjets3t-java', 'libxfixes3:amd64', 'libsctp1', 'libgnumail-java', 'libgtk2.0-common', 'libpcsclite1:amd64', 'libxxf86vm1:amd64', 'libatk1.0-data', 'libx11-xcb1:amd64', 'libexpat1:amd64', 'libjsch-java', 'libxcb-shm0:amd64', 'perl', 'libmysqlclient18:amd64', 'libwrap0:amd64', 'libdbd-mysql-perl', 'libnss3:amd64', 'libogg0:amd64', 'libgnutls26:amd64', 'libxml-commons-external-java', 'libgif4', 'libavahi-common-data:amd64', 'libkrb5support0:amd64', 'libjaxme-java', 'libcups2:amd64', 'libregexp-java', 'biomaj'] 1m31.9s INFO: Running scripts post_remove 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_remove_exceptions'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_remove_exceptions'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg', '--purge', 'java-common', 'libgdk-pixbuf2.0-0:amd64', 'libgssapi-krb5-2:amd64', 'libjbig0:amd64', 'libdbi-perl', 'libfreetype6:amd64', 'mysql-common', 'libatk-wrapper-java', 'libgnuinet-java', 'libdbus-1-3:amd64', 'libdatrie1:amd64', 'liboro-java', 'libgdbm3:amd64', 'fontconfig', 'libcap2:amd64', 'libgtk2.0-0:amd64', 'libxom-java', 'libnspr4:amd64', 'libdom4j-java', 'libjcommon-java', 'ant', 'libxdamage1:amd64', 'libvorbisenc2:amd64', 'libgdk-pixbuf2.0-common', 'libkrb5-3:amd64', 'mysql-client-5.5', 'libjgoodies-forms-java', 'ca-certificates', 'libglib2.0-0:amd64', 'libpng12-0:amd64', 'libjasper1:amd64', 'mysql-server-core-5.5', 'libaio1:amd64', 'libp11-kit0:amd64', 'libmysql-java', 'libcommons-httpclient-java', 'libatk1.0-0:amd64', 'libcommons-logging-java', 'psmisc', 'libcommons-discovery-java', 'libcommons-parent-java', 'libavahi-client3:amd64', 'libjson0:amd64', 'shared-mime-info', 'libxerces2-java', 'libcommons-dbcp-java', 'libxi6:amd64', 'libgcrypt11:amd64', 'libx11-6:amd64', 'libk5crypto3:amd64', 'mysql-server-5.5', 'libjpeg8:amd64', 'junit4', 'libdrm2:amd64', 'libcommons-net2-java', 'libcommons-lang-java', 'libjdom1-java', 'libswitch-perl', 'libsaxonb-java', 'libsndfile1:amd64', 'libaxis-java', 'libxtst6:amd64', 'liblog4j1.2-java', 'ant-contrib', 'libxext6:amd64', 'libthai0:amd64', 'libcommons-codec-java', 'libxdmcp6:amd64', 'libcommons-pool-java', 'libasyncns0:amd64', 'libasound2:amd64', 'libpango1.0-0:amd64', 'libflac8:amd64', 'libgl1-mesa-glx:amd64', 'openjdk-6-jre-lib', 'libxpp2-java', 'libxml2:amd64', 'libcommons-cli-java', 'libxcomposite1:amd64', 'libxrandr2:amd64', 'ca-certificates-java', 'openssl', 'fontconfig-config', 'libxinerama1:amd64', 'libxft2:amd64', 'libapache-pom-java', 'libx11-data', 'openjdk-7-jre-headless:amd64', 'libthai-data', 'libglapi-mesa:amd64', 'libpulse0:amd64', 'libfontconfig1:amd64', 'openjdk-6-jre-headless:amd64', 'mysql-server', 'libtasn1-3:amd64', 'libsm6:amd64', 'ant-optional', 'libwsdl4j-java', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libpcre3:amd64', 'liblcms2-2:amd64', 'x11-common', 'libxpp3-java', 'libssl1.0.0:amd64', 'libxcb-glx0:amd64', 'libservlet2.5-java', 'libxrender1:amd64', 'libgpg-error0:amd64', 'tzdata-java', 'libxml-commons-resolver1.1-java', 'libhamcrest-java', 'libxcb1:amd64', 'ttf-dejavu-core', 'libice6:amd64', 'libbackport-util-concurrent-java', 'libatk-wrapper-java-jni:amd64', 'libxcursor1:amd64', 'libavahi-common3:amd64', 'libxau6:amd64', 'libxcb-render0:amd64', 'libjava-xmlbuilder-java', 'libcairo2:amd64', 'openjdk-6-jre:amd64', 'default-jre-headless', 'libgnujaf-java', 'libffi5:amd64', 'libvorbis0a:amd64', 'libjaxen-java', 'libkeyutils1:amd64', 'libpixman-1-0:amd64', 'openjdk-7-jre:amd64', 'libhsqldb-java', 'perl-modules', 'libtiff4:amd64', 'default-jre', 'libjets3t-java', 'libxfixes3:amd64', 'libsctp1', 'libgnumail-java', 'libgtk2.0-common', 'libpcsclite1:amd64', 'libxxf86vm1:amd64', 'libatk1.0-data', 'libx11-xcb1:amd64', 'libexpat1:amd64', 'libjsch-java', 'libxcb-shm0:amd64', 'perl', 'libmysqlclient18:amd64', 'libwrap0:amd64', 'libdbd-mysql-perl', 'libnss3:amd64', 'libogg0:amd64', 'libgnutls26:amd64', 'libxml-commons-external-java', 'libgif4', 'libavahi-common-data:amd64', 'libkrb5support0:amd64', 'libjaxme-java', 'libcups2:amd64', 'libregexp-java'] 1m32.7s DUMP: (Reading database ... 6935 files and directories currently installed.) Removing java-common ... Purging configuration files for java-common ... Removing libgdk-pixbuf2.0-0:amd64 ... Purging configuration files for libgdk-pixbuf2.0-0:amd64 ... Removing libgssapi-krb5-2:amd64 ... Purging configuration files for libgssapi-krb5-2:amd64 ... Removing libjbig0:amd64 ... Purging configuration files for libjbig0:amd64 ... dpkg: warning: ignoring request to remove libdbi-perl which isn't installed Removing libfreetype6:amd64 ... Purging configuration files for libfreetype6:amd64 ... Removing mysql-common ... Purging configuration files for mysql-common ... dpkg: warning: ignoring request to remove libatk-wrapper-java which isn't installed dpkg: warning: ignoring request to remove libgnuinet-java which isn't installed Removing libdbus-1-3:amd64 ... Purging configuration files for libdbus-1-3:amd64 ... Removing libdatrie1:amd64 ... Purging configuration files for libdatrie1:amd64 ... dpkg: warning: ignoring request to remove liboro-java which isn't installed Removing libgdbm3:amd64 ... Purging configuration files for libgdbm3:amd64 ... Removing fontconfig ... Purging configuration files for fontconfig ... Removing libcap2:amd64 ... Purging configuration files for libcap2:amd64 ... Removing libgtk2.0-0:amd64 ... Purging configuration files for libgtk2.0-0:amd64 ... dpkg: warning: ignoring request to remove libxom-java which isn't installed Removing libnspr4:amd64 ... Purging configuration files for libnspr4:amd64 ... dpkg: warning: ignoring request to remove libdom4j-java which isn't installed dpkg: warning: ignoring request to remove libjcommon-java which isn't installed dpkg: warning: ignoring request to remove ant which isn't installed Removing libxdamage1:amd64 ... Purging configuration files for libxdamage1:amd64 ... Removing libvorbisenc2:amd64 ... Purging configuration files for libvorbisenc2:amd64 ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed Removing libkrb5-3:amd64 ... Purging configuration files for libkrb5-3:amd64 ... dpkg: warning: ignoring request to remove mysql-client-5.5 which isn't installed dpkg: warning: ignoring request to remove libjgoodies-forms-java which isn't installed Removing ca-certificates ... Purging configuration files for ca-certificates ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libglib2.0-0:amd64 ... Purging configuration files for libglib2.0-0:amd64 ... Removing libpng12-0:amd64 ... Purging configuration files for libpng12-0:amd64 ... Removing libjasper1:amd64 ... Purging configuration files for libjasper1:amd64 ... dpkg: warning: ignoring request to remove mysql-server-core-5.5 which isn't installed Removing libaio1:amd64 ... Purging configuration files for libaio1:amd64 ... Removing libp11-kit0:amd64 ... Purging configuration files for libp11-kit0:amd64 ... dpkg: warning: ignoring request to remove libmysql-java which isn't installed dpkg: warning: ignoring request to remove libcommons-httpclient-java which isn't installed Removing libatk1.0-0:amd64 ... Purging configuration files for libatk1.0-0:amd64 ... dpkg: warning: ignoring request to remove libcommons-logging-java which isn't installed Removing psmisc ... Purging configuration files for psmisc ... dpkg: warning: ignoring request to remove libcommons-discovery-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed Removing libavahi-client3:amd64 ... Purging configuration files for libavahi-client3:amd64 ... Removing libjson0:amd64 ... Purging configuration files for libjson0:amd64 ... Removing shared-mime-info ... Purging configuration files for shared-mime-info ... dpkg: warning: ignoring request to remove libxerces2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-dbcp-java which isn't installed Removing libxi6:amd64 ... Purging configuration files for libxi6:amd64 ... Removing libgcrypt11:amd64 ... Purging configuration files for libgcrypt11:amd64 ... Removing libx11-6:amd64 ... Purging configuration files for libx11-6:amd64 ... Removing libk5crypto3:amd64 ... Purging configuration files for libk5crypto3:amd64 ... Removing mysql-server-5.5 ... Purging configuration files for mysql-server-5.5 ... dpkg: warning: while removing mysql-server-5.5, directory '/etc/mysql' not empty so not removed dpkg: warning: ignoring request to remove libjpeg8 which isn't installed dpkg: warning: ignoring request to remove junit4 which isn't installed Removing libdrm2:amd64 ... Purging configuration files for libdrm2:amd64 ... dpkg: warning: ignoring request to remove libcommons-net2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang-java which isn't installed dpkg: warning: ignoring request to remove libjdom1-java which isn't installed dpkg: warning: ignoring request to remove libswitch-perl which isn't installed dpkg: warning: ignoring request to remove libsaxonb-java which isn't installed Removing libsndfile1:amd64 ... Purging configuration files for libsndfile1:amd64 ... dpkg: warning: ignoring request to remove libaxis-java which isn't installed Removing libxtst6:amd64 ... Purging configuration files for libxtst6:amd64 ... dpkg: warning: ignoring request to remove liblog4j1.2-java which isn't installed dpkg: warning: ignoring request to remove ant-contrib which isn't installed Removing libxext6:amd64 ... Purging configuration files for libxext6:amd64 ... Removing libthai0:amd64 ... Purging configuration files for libthai0:amd64 ... dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed Removing libxdmcp6:amd64 ... Purging configuration files for libxdmcp6:amd64 ... dpkg: warning: ignoring request to remove libcommons-pool-java which isn't installed Removing libasyncns0:amd64 ... Purging configuration files for libasyncns0:amd64 ... Removing libasound2:amd64 ... Purging configuration files for libasound2:amd64 ... Removing libpango1.0-0:amd64 ... Purging configuration files for libpango1.0-0:amd64 ... Removing libflac8:amd64 ... Purging configuration files for libflac8:amd64 ... Removing libgl1-mesa-glx:amd64 ... Purging configuration files for libgl1-mesa-glx:amd64 ... dpkg: warning: ignoring request to remove openjdk-6-jre-lib which isn't installed dpkg: warning: ignoring request to remove libxpp2-java which isn't installed Removing libxml2:amd64 ... Purging configuration files for libxml2:amd64 ... dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed Removing libxcomposite1:amd64 ... Purging configuration files for libxcomposite1:amd64 ... Removing libxrandr2:amd64 ... Purging configuration files for libxrandr2:amd64 ... Removing ca-certificates-java ... Purging configuration files for ca-certificates-java ... Removing openssl ... Purging configuration files for openssl ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing libxinerama1:amd64 ... Purging configuration files for libxinerama1:amd64 ... Removing libxft2:amd64 ... Purging configuration files for libxft2:amd64 ... dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed Removing openjdk-7-jre-headless:amd64 ... Purging configuration files for openjdk-7-jre-headless:amd64 ... dpkg: warning: ignoring request to remove libthai-data which isn't installed Removing libglapi-mesa:amd64 ... Purging configuration files for libglapi-mesa:amd64 ... Removing libpulse0:amd64 ... Purging configuration files for libpulse0:amd64 ... Removing libfontconfig1:amd64 ... Purging configuration files for libfontconfig1:amd64 ... Removing openjdk-6-jre-headless:amd64 ... Purging configuration files for openjdk-6-jre-headless:amd64 ... dpkg: warning: ignoring request to remove mysql-server which isn't installed Removing libtasn1-3:amd64 ... Purging configuration files for libtasn1-3:amd64 ... Removing libsm6:amd64 ... Purging configuration files for libsm6:amd64 ... dpkg: warning: ignoring request to remove ant-optional which isn't installed dpkg: warning: ignoring request to remove libwsdl4j-java which isn't installed Removing libsqlite3-0:amd64 ... Purging configuration files for libsqlite3-0:amd64 ... dpkg: warning: ignoring request to remove libclass-isa-perl which isn't installed Removing libpcre3:amd64 ... Purging configuration files for libpcre3:amd64 ... Removing liblcms2-2:amd64 ... Purging configuration files for liblcms2-2:amd64 ... Removing x11-common ... Purging configuration files for x11-common ... dpkg: warning: ignoring request to remove libxpp3-java which isn't installed Removing libssl1.0.0:amd64 ... Purging configuration files for libssl1.0.0:amd64 ... Removing libxcb-glx0:amd64 ... Purging configuration files for libxcb-glx0:amd64 ... dpkg: warning: ignoring request to remove libservlet2.5-java which isn't installed Removing libxrender1:amd64 ... Purging configuration files for libxrender1:amd64 ... Removing libgpg-error0:amd64 ... Purging configuration files for libgpg-error0:amd64 ... dpkg: warning: ignoring request to remove tzdata-java which isn't installed Removing libxml-commons-resolver1.1-java ... Purging configuration files for libxml-commons-resolver1.1-java ... dpkg: warning: ignoring request to remove libhamcrest-java which isn't installed Removing libxcb1:amd64 ... Purging configuration files for libxcb1:amd64 ... dpkg: warning: ignoring request to remove ttf-dejavu-core which isn't installed Removing libice6:amd64 ... Purging configuration files for libice6:amd64 ... dpkg: warning: ignoring request to remove libbackport-util-concurrent-java which isn't installed Removing libatk-wrapper-java-jni:amd64 ... Purging configuration files for libatk-wrapper-java-jni:amd64 ... Removing libxcursor1:amd64 ... Purging configuration files for libxcursor1:amd64 ... Removing libavahi-common3:amd64 ... Purging configuration files for libavahi-common3:amd64 ... Removing libxau6:amd64 ... Purging configuration files for libxau6:amd64 ... Removing libxcb-render0:amd64 ... Purging configuration files for libxcb-render0:amd64 ... dpkg: warning: ignoring request to remove libjava-xmlbuilder-java which isn't installed Removing libcairo2:amd64 ... Purging configuration files for libcairo2:amd64 ... dpkg: warning: ignoring request to remove openjdk-6-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove libgnujaf-java which isn't installed Removing libffi5:amd64 ... Purging configuration files for libffi5:amd64 ... Removing libvorbis0a:amd64 ... Purging configuration files for libvorbis0a:amd64 ... dpkg: warning: ignoring request to remove libjaxen-java which isn't installed Removing libkeyutils1:amd64 ... Purging configuration files for libkeyutils1:amd64 ... Removing libpixman-1-0:amd64 ... Purging configuration files for libpixman-1-0:amd64 ... dpkg: warning: ignoring request to remove openjdk-7-jre which isn't installed dpkg: warning: ignoring request to remove libhsqldb-java which isn't installed Removing perl-modules ... Purging configuration files for perl-modules ... Removing libtiff4:amd64 ... Purging configuration files for libtiff4:amd64 ... dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove libjets3t-java which isn't installed Removing libxfixes3:amd64 ... Purging configuration files for libxfixes3:amd64 ... Removing libsctp1 ... Purging configuration files for libsctp1 ... dpkg: warning: ignoring request to remove libgnumail-java which isn't installed Removing libgtk2.0-common ... Purging configuration files for libgtk2.0-common ... Removing libpcsclite1:amd64 ... Purging configuration files for libpcsclite1:amd64 ... Removing libxxf86vm1:amd64 ... Purging configuration files for libxxf86vm1:amd64 ... dpkg: warning: ignoring request to remove libatk1.0-data which isn't installed Removing libx11-xcb1:amd64 ... Purging configuration files for libx11-xcb1:amd64 ... Removing libexpat1:amd64 ... Purging configuration files for libexpat1:amd64 ... dpkg: warning: ignoring request to remove libjsch-java which isn't installed Removing libxcb-shm0:amd64 ... Purging configuration files for libxcb-shm0:amd64 ... dpkg: warning: ignoring request to remove perl which isn't installed Removing libmysqlclient18:amd64 ... Purging configuration files for libmysqlclient18:amd64 ... Removing libwrap0:amd64 ... Purging configuration files for libwrap0:amd64 ... dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed Removing libnss3:amd64 ... Purging configuration files for libnss3:amd64 ... Removing libogg0:amd64 ... Purging configuration files for libogg0:amd64 ... Removing libgnutls26:amd64 ... Purging configuration files for libgnutls26:amd64 ... dpkg: warning: ignoring request to remove libxml-commons-external-java which isn't installed Removing libgif4 ... Purging configuration files for libgif4 ... dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed Removing libkrb5support0:amd64 ... Purging configuration files for libkrb5support0:amd64 ... dpkg: warning: ignoring request to remove libjaxme-java which isn't installed Removing libcups2:amd64 ... Purging configuration files for libcups2:amd64 ... dpkg: warning: ignoring request to remove libregexp-java which isn't installed 1m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg', '--purge', 'java-common', 'libgdk-pixbuf2.0-0:amd64', 'libgssapi-krb5-2:amd64', 'libjbig0:amd64', 'libdbi-perl', 'libfreetype6:amd64', 'mysql-common', 'libatk-wrapper-java', 'libgnuinet-java', 'libdbus-1-3:amd64', 'libdatrie1:amd64', 'liboro-java', 'libgdbm3:amd64', 'fontconfig', 'libcap2:amd64', 'libgtk2.0-0:amd64', 'libxom-java', 'libnspr4:amd64', 'libdom4j-java', 'libjcommon-java', 'ant', 'libxdamage1:amd64', 'libvorbisenc2:amd64', 'libgdk-pixbuf2.0-common', 'libkrb5-3:amd64', 'mysql-client-5.5', 'libjgoodies-forms-java', 'ca-certificates', 'libglib2.0-0:amd64', 'libpng12-0:amd64', 'libjasper1:amd64', 'mysql-server-core-5.5', 'libaio1:amd64', 'libp11-kit0:amd64', 'libmysql-java', 'libcommons-httpclient-java', 'libatk1.0-0:amd64', 'libcommons-logging-java', 'psmisc', 'libcommons-discovery-java', 'libcommons-parent-java', 'libavahi-client3:amd64', 'libjson0:amd64', 'shared-mime-info', 'libxerces2-java', 'libcommons-dbcp-java', 'libxi6:amd64', 'libgcrypt11:amd64', 'libx11-6:amd64', 'libk5crypto3:amd64', 'mysql-server-5.5', 'libjpeg8:amd64', 'junit4', 'libdrm2:amd64', 'libcommons-net2-java', 'libcommons-lang-java', 'libjdom1-java', 'libswitch-perl', 'libsaxonb-java', 'libsndfile1:amd64', 'libaxis-java', 'libxtst6:amd64', 'liblog4j1.2-java', 'ant-contrib', 'libxext6:amd64', 'libthai0:amd64', 'libcommons-codec-java', 'libxdmcp6:amd64', 'libcommons-pool-java', 'libasyncns0:amd64', 'libasound2:amd64', 'libpango1.0-0:amd64', 'libflac8:amd64', 'libgl1-mesa-glx:amd64', 'openjdk-6-jre-lib', 'libxpp2-java', 'libxml2:amd64', 'libcommons-cli-java', 'libxcomposite1:amd64', 'libxrandr2:amd64', 'ca-certificates-java', 'openssl', 'fontconfig-config', 'libxinerama1:amd64', 'libxft2:amd64', 'libapache-pom-java', 'libx11-data', 'openjdk-7-jre-headless:amd64', 'libthai-data', 'libglapi-mesa:amd64', 'libpulse0:amd64', 'libfontconfig1:amd64', 'openjdk-6-jre-headless:amd64', 'mysql-server', 'libtasn1-3:amd64', 'libsm6:amd64', 'ant-optional', 'libwsdl4j-java', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'libpcre3:amd64', 'liblcms2-2:amd64', 'x11-common', 'libxpp3-java', 'libssl1.0.0:amd64', 'libxcb-glx0:amd64', 'libservlet2.5-java', 'libxrender1:amd64', 'libgpg-error0:amd64', 'tzdata-java', 'libxml-commons-resolver1.1-java', 'libhamcrest-java', 'libxcb1:amd64', 'ttf-dejavu-core', 'libice6:amd64', 'libbackport-util-concurrent-java', 'libatk-wrapper-java-jni:amd64', 'libxcursor1:amd64', 'libavahi-common3:amd64', 'libxau6:amd64', 'libxcb-render0:amd64', 'libjava-xmlbuilder-java', 'libcairo2:amd64', 'openjdk-6-jre:amd64', 'default-jre-headless', 'libgnujaf-java', 'libffi5:amd64', 'libvorbis0a:amd64', 'libjaxen-java', 'libkeyutils1:amd64', 'libpixman-1-0:amd64', 'openjdk-7-jre:amd64', 'libhsqldb-java', 'perl-modules', 'libtiff4:amd64', 'default-jre', 'libjets3t-java', 'libxfixes3:amd64', 'libsctp1', 'libgnumail-java', 'libgtk2.0-common', 'libpcsclite1:amd64', 'libxxf86vm1:amd64', 'libatk1.0-data', 'libx11-xcb1:amd64', 'libexpat1:amd64', 'libjsch-java', 'libxcb-shm0:amd64', 'perl', 'libmysqlclient18:amd64', 'libwrap0:amd64', 'libdbd-mysql-perl', 'libnss3:amd64', 'libogg0:amd64', 'libgnutls26:amd64', 'libxml-commons-external-java', 'libgif4', 'libavahi-common-data:amd64', 'libkrb5support0:amd64', 'libjaxme-java', 'libcups2:amd64', 'libregexp-java'] 1m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg', '--purge', 'biomaj'] 1m32.8s DUMP: (Reading database ... 6789 files and directories currently installed.) Removing biomaj ... Purging configuration files for biomaj ... Warning, BioMAJ database for MySQL is not deleted by process removal. 1m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg', '--purge', 'biomaj'] 1m32.8s INFO: Running scripts post_purge 1m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_purge_exceptions'] 1m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_purge_exceptions'] 1m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg', '--purge', '--pending'] 1m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg', '--purge', '--pending'] 1m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg', '--remove', '--pending'] 1m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg', '--remove', '--pending'] 1m32.8s INFO: Running scripts post_test 1m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_test_exceptions'] 1m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'tmp/scripts/post_test_exceptions'] 1m32.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 1m33.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 1m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg-divert', '--list'] 1m33.3s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'dpkg-divert', '--list'] 1m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', 'clean'] 1m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpttMO7X', 'apt-get', 'clean'] 1m33.4s DEBUG: Recording chroot state 1m34.0s INFO: Warning: Package purging left files on system: /etc/mysql/ owned by: mysql-server-5.5, mysql-common /etc/mysql/debian.cnf not owned /var/lib/mysql-files/ not owned /var/lib/mysql/ not owned /var/lib/mysql/debian-5.5.flag not owned /var/lib/mysql/ib_logfile0 not owned /var/lib/mysql/ib_logfile1 not owned /var/lib/mysql/ibdata1 not owned /var/lib/mysql/mysql/ not owned /var/lib/mysql/mysql/columns_priv.MYD not owned /var/lib/mysql/mysql/columns_priv.MYI not owned /var/lib/mysql/mysql/columns_priv.frm not owned /var/lib/mysql/mysql/db.MYD not owned /var/lib/mysql/mysql/db.MYI not owned /var/lib/mysql/mysql/db.frm not owned /var/lib/mysql/mysql/event.MYD not owned /var/lib/mysql/mysql/event.MYI not owned /var/lib/mysql/mysql/event.frm not owned /var/lib/mysql/mysql/func.MYD not owned /var/lib/mysql/mysql/func.MYI not owned /var/lib/mysql/mysql/func.frm not owned /var/lib/mysql/mysql/general_log.CSM not owned /var/lib/mysql/mysql/general_log.CSV not owned /var/lib/mysql/mysql/general_log.frm not owned /var/lib/mysql/mysql/help_category.MYD not owned /var/lib/mysql/mysql/help_category.MYI not owned /var/lib/mysql/mysql/help_category.frm not owned /var/lib/mysql/mysql/help_keyword.MYD not owned /var/lib/mysql/mysql/help_keyword.MYI not owned /var/lib/mysql/mysql/help_keyword.frm not owned /var/lib/mysql/mysql/help_relation.MYD not owned /var/lib/mysql/mysql/help_relation.MYI not owned /var/lib/mysql/mysql/help_relation.frm not owned /var/lib/mysql/mysql/help_topic.MYD not owned /var/lib/mysql/mysql/help_topic.MYI not owned /var/lib/mysql/mysql/help_topic.frm not owned /var/lib/mysql/mysql/host.MYD not owned /var/lib/mysql/mysql/host.MYI not owned /var/lib/mysql/mysql/host.frm not owned /var/lib/mysql/mysql/ndb_binlog_index.MYD not owned /var/lib/mysql/mysql/ndb_binlog_index.MYI not owned /var/lib/mysql/mysql/ndb_binlog_index.frm not owned /var/lib/mysql/mysql/plugin.MYD not owned /var/lib/mysql/mysql/plugin.MYI not owned /var/lib/mysql/mysql/plugin.frm not owned /var/lib/mysql/mysql/proc.MYD not owned /var/lib/mysql/mysql/proc.MYI not owned /var/lib/mysql/mysql/proc.frm not owned /var/lib/mysql/mysql/procs_priv.MYD not owned /var/lib/mysql/mysql/procs_priv.MYI not owned /var/lib/mysql/mysql/procs_priv.frm not owned /var/lib/mysql/mysql/proxies_priv.MYD not owned /var/lib/mysql/mysql/proxies_priv.MYI not owned /var/lib/mysql/mysql/proxies_priv.frm not owned /var/lib/mysql/mysql/servers.MYD not owned /var/lib/mysql/mysql/servers.MYI not owned /var/lib/mysql/mysql/servers.frm not owned /var/lib/mysql/mysql/slow_log.CSM not owned /var/lib/mysql/mysql/slow_log.CSV not owned /var/lib/mysql/mysql/slow_log.frm not owned /var/lib/mysql/mysql/tables_priv.MYD not owned /var/lib/mysql/mysql/tables_priv.MYI not owned /var/lib/mysql/mysql/tables_priv.frm not owned /var/lib/mysql/mysql/time_zone.MYD not owned /var/lib/mysql/mysql/time_zone.MYI not owned /var/lib/mysql/mysql/time_zone.frm not owned /var/lib/mysql/mysql/time_zone_leap_second.MYD not owned /var/lib/mysql/mysql/time_zone_leap_second.MYI not owned /var/lib/mysql/mysql/time_zone_leap_second.frm not owned /var/lib/mysql/mysql/time_zone_name.MYD not owned /var/lib/mysql/mysql/time_zone_name.MYI not owned /var/lib/mysql/mysql/time_zone_name.frm not owned /var/lib/mysql/mysql/time_zone_transition.MYD not owned /var/lib/mysql/mysql/time_zone_transition.MYI not owned /var/lib/mysql/mysql/time_zone_transition.frm not owned /var/lib/mysql/mysql/time_zone_transition_type.MYD not owned /var/lib/mysql/mysql/time_zone_transition_type.MYI not owned /var/lib/mysql/mysql/time_zone_transition_type.frm not owned /var/lib/mysql/mysql/user.MYD not owned /var/lib/mysql/mysql/user.MYI not owned /var/lib/mysql/mysql/user.frm not owned /var/lib/mysql/mysql_upgrade_info not owned /var/lib/mysql/performance_schema/ not owned /var/lib/mysql/performance_schema/cond_instances.frm not owned /var/lib/mysql/performance_schema/db.opt not owned /var/lib/mysql/performance_schema/events_waits_current.frm not owned /var/lib/mysql/performance_schema/events_waits_history.frm not owned /var/lib/mysql/performance_schema/events_waits_history_long.frm not owned /var/lib/mysql/performance_schema/events_waits_summary_by_instance.frm not owned /var/lib/mysql/performance_schema/events_waits_summary_by_thread_by_event_name.frm not owned /var/lib/mysql/performance_schema/events_waits_summary_global_by_event_name.frm not owned /var/lib/mysql/performance_schema/file_instances.frm not owned /var/lib/mysql/performance_schema/file_summary_by_event_name.frm not owned /var/lib/mysql/performance_schema/file_summary_by_instance.frm not owned /var/lib/mysql/performance_schema/mutex_instances.frm not owned /var/lib/mysql/performance_schema/performance_timers.frm not owned /var/lib/mysql/performance_schema/rwlock_instances.frm not owned /var/lib/mysql/performance_schema/setup_consumers.frm not owned /var/lib/mysql/performance_schema/setup_instruments.frm not owned /var/lib/mysql/performance_schema/setup_timers.frm not owned /var/lib/mysql/performance_schema/threads.frm not owned 1m34.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpttMO7X/run/shm'] 1m34.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpttMO7X/run/shm'] 1m34.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/console'] 1m34.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/console'] 1m34.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/ptmx'] 1m34.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/ptmx'] 1m34.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/pts'] 1m34.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpttMO7X/dev/pts'] 1m34.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpttMO7X/proc'] 1m34.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpttMO7X/proc'] 1m34.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 1m34.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpttMO7X'] 1m34.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpttMO7X 1m34.7s INFO: PASS: Upgrading between Debian distributions. 1m34.7s INFO: PASS: All tests. 1m34.7s INFO: piuparts run ends. ret=0 End: 2018-03-25 14:39:28 UTC