Start: 2018-08-05 01:31:04 UTC [wheezy] Package: emboss-lib Source: emboss Version: 6.4.0-2 Installed-Size: 14233 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: libajax5, libajax5-dev, libajax6, libajax6-dev, libnucleus5, libnucleus5-dev, libnucleus6, libnucleus6-dev Depends: libc6 (>= 2.11), libexpat1 (>= 2.0.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libhpdf-2.2.1, libmysqlclient18 (>= 5.5.24+dfsg-1), libpng12-0 (>= 1.2.13-4), libpq5, zlib1g (>= 1:1.1.4) Conflicts: libajax5, libajax5-dev, libajax6, libajax6-dev, libnucleus5, libnucleus5-dev, libnucleus6, libnucleus6-dev Breaks: embassy-domainatrix (<= 0.1.0+20100721-3), embassy-domalign (<= 0.1.0+20100721-3), embassy-domsearch (<= 0.1.0++20100721-3), embassy-phylip (<= 3.69+20100721-3) Description: EMBOSS Libraries Homepage: http://emboss.sourceforge.net Description-md5: 1a4b801fb90e6b942e8beea3b7049542 Tag: devel::lang:c, devel::library, field::biology, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::shared-lib Section: science Priority: optional Filename: pool/main/e/emboss/emboss-lib_6.4.0-2_amd64.deb Size: 2822990 MD5sum: 9595d07844be7ebe711eacb6d52bb42d SHA1: d291eca485b112beb7fd068b7398f2401d34a503 SHA256: 37e0d49f2adf50d8d26a2714bd100233ae165796a67a04124e3fc1aec8a59c52 [wheezy-lts] Package: emboss-lib Source: emboss Version: 6.4.0-2 Installed-Size: 14233 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: libajax5, libajax5-dev, libajax6, libajax6-dev, libnucleus5, libnucleus5-dev, libnucleus6, libnucleus6-dev Depends: libc6 (>= 2.11), libexpat1 (>= 2.0.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libhpdf-2.2.1, libmysqlclient18 (>= 5.5.24+dfsg-1), libpng12-0 (>= 1.2.13-4), libpq5, zlib1g (>= 1:1.1.4) Conflicts: libajax5, libajax5-dev, libajax6, libajax6-dev, libnucleus5, libnucleus5-dev, libnucleus6, libnucleus6-dev Breaks: embassy-domainatrix (<= 0.1.0+20100721-3), embassy-domalign (<= 0.1.0+20100721-3), embassy-domsearch (<= 0.1.0++20100721-3), embassy-phylip (<= 3.69+20100721-3) Description: EMBOSS Libraries Homepage: http://emboss.sourceforge.net Description-md5: 1a4b801fb90e6b942e8beea3b7049542 Tag: devel::lang:c, devel::library, field::biology, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::shared-lib Section: science Priority: optional Filename: pool/main/e/emboss/emboss-lib_6.4.0-2_amd64.deb Size: 2822990 MD5sum: 9595d07844be7ebe711eacb6d52bb42d SHA1: d291eca485b112beb7fd068b7398f2401d34a503 SHA256: 37e0d49f2adf50d8d26a2714bd100233ae165796a67a04124e3fc1aec8a59c52 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt emboss-lib=6.4.0-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.90~201806121501~0.89-1-g6355f063 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt emboss-lib=6.4.0-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-7-amd64 #1 SMP Debian 4.9.110-1 (2018-07-05) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpg__jrB 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpg__jrB 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpg__jrB', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpg__jrB', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpg__jrB/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpg__jrB/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpg__jrB/run/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpg__jrB/run/shm'] 0m1.7s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpg__jrB/tmp/scripts/ 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmpg__jrB/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', 'update'] 0m3.9s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Reading package lists... 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', 'update'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', '-yf', 'dist-upgrade'] 0m4.1s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', '-yf', 'dist-upgrade'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s INFO: Running scripts post_setup 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_dummy_users'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_dummy_users'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_forbid_home'] 0m4.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_forbid_home'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_minimize'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_minimize'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m5.3s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 335 kB of archives. After this operation, 1327 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 335 kB in 0s (25.1 MB/s) Selecting previously unselected package adduser. (Reading database ... 6639 files and directories currently installed.) Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up adduser (3.113+nmu3) ... Setting up ucf (3.0025+nmu3) ... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_zz_backports'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_setup_zz_backports'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m5.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m6.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m6.3s INFO: Running scripts is_testable 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/is_testable_uninstallable'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/is_testable_uninstallable'] 0m6.3s INFO: Running scripts pre_test 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_test_exceptions'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_test_exceptions'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_test_root_password'] 0m6.4s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_test_root_password'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'show', '--no-all-versions', 'emboss-lib'] 0m6.4s DUMP: Package: emboss-lib Source: emboss Version: 6.4.0-2 Installed-Size: 14233 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: libajax5, libajax5-dev, libajax6, libajax6-dev, libnucleus5, libnucleus5-dev, libnucleus6, libnucleus6-dev Depends: libc6 (>= 2.11), libexpat1 (>= 2.0.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libhpdf-2.2.1, libmysqlclient18 (>= 5.5.24+dfsg-1), libpng12-0 (>= 1.2.13-4), libpq5, zlib1g (>= 1:1.1.4) Conflicts: libajax5, libajax5-dev, libajax6, libajax6-dev, libnucleus5, libnucleus5-dev, libnucleus6, libnucleus6-dev Breaks: embassy-domainatrix (<= 0.1.0+20100721-3), embassy-domalign (<= 0.1.0+20100721-3), embassy-domsearch (<= 0.1.0++20100721-3), embassy-phylip (<= 3.69+20100721-3) Description-en: EMBOSS Libraries This package contains the core libraries of the European Molecular Biology Open Software Suite, EMBOSS. . AJAX covers standard data structures, including strings, sequences, file handles, queues, hashes, heaps, lists, dictionaries, trees and dynamic arrays. It also covers standard algorithms including comparisons, pattern matching, sorting, and iterators. AJAX will also provide a set of high level graphics functions suited to the needs of sequence analysis applications. . The NUCLEUS library provides higher-level functions specific to molecular sequence analysis, including sequence comparisons, translation, codon usage and annotation. . It also contains a eplplot, an EMBOSS, a fork of the plplot library. . In Debian, these libraries are to be considered private. Homepage: http://emboss.sourceforge.net Description-md5: 1a4b801fb90e6b942e8beea3b7049542 Tag: devel::lang:c, devel::library, field::biology, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::shared-lib Section: science Priority: optional Filename: pool/main/e/emboss/emboss-lib_6.4.0-2_amd64.deb Size: 2822990 MD5sum: 9595d07844be7ebe711eacb6d52bb42d SHA1: d291eca485b112beb7fd068b7398f2401d34a503 SHA256: 37e0d49f2adf50d8d26a2714bd100233ae165796a67a04124e3fc1aec8a59c52 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'show', '--no-all-versions', 'emboss-lib'] 0m6.4s INFO: apt-cache knows about the following packages: emboss-lib 0m6.4s INFO: Running scripts pre_install 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_database-server'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_database-server'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_exceptions'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_exceptions'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_extras'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_extras'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'policy'] 0m6.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'policy'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'policy', 'emboss-lib'] 0m6.5s DUMP: emboss-lib: Installed: (none) Candidate: 6.4.0-2 Version table: 6.4.0-2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'policy', 'emboss-lib'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', '-y', 'install', 'emboss-lib'] 0m8.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libexpat1 libfreetype6 libgcrypt11 libgd2-noxpm libgnutls26 libgpg-error0 libgssapi-krb5-2 libhpdf-2.2.1 libjpeg8 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmysqlclient18 libp11-kit0 libpng12-0 libpq5 libsasl2-2 libssl1.0.0 libtasn1-3 mysql-common Suggested packages: rng-tools libgd-tools krb5-doc krb5-user Recommended packages: krb5-locales libsasl2-modules The following NEW packages will be installed: emboss-lib libexpat1 libfreetype6 libgcrypt11 libgd2-noxpm libgnutls26 libgpg-error0 libgssapi-krb5-2 libhpdf-2.2.1 libjpeg8 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmysqlclient18 libp11-kit0 libpng12-0 libpq5 libsasl2-2 libssl1.0.0 libtasn1-3 mysql-common 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. Need to get 8848 kB of archives. After this operation, 30.5 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main libssl1.0.0 amd64 1.0.1e-2+deb7u20 [1263 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libgcrypt11 amd64 1.5.0-5+deb7u4 [301 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main libtasn1-3 amd64 2.13-2+deb7u2 [67.8 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main libgnutls26 amd64 2.12.20-8+deb7u5 [620 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main libkeyutils1 amd64 1.5.5-3+deb7u1 [8664 B] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libkrb5support0 amd64 1.10.1+dfsg-5+deb7u7 [50.5 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libk5crypto3 amd64 1.10.1+dfsg-5+deb7u7 [113 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libkrb5-3 amd64 1.10.1+dfsg-5+deb7u7 [394 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libgssapi-krb5-2 amd64 1.10.1+dfsg-5+deb7u7 [150 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libsasl2-2 amd64 2.1.25.dfsg1-6+deb7u1 [120 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libldap-2.4-2 amd64 2.4.31-2+deb7u2 [243 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main libfreetype6 amd64 2.4.9-1.1+deb7u3 [452 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main libjpeg8 amd64 8d-1+deb7u1 [138 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main libpng12-0 amd64 1.2.49-1+deb7u2 [191 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main libgd2-noxpm amd64 2.0.36~rc1~dfsg-6.1+deb7u2 [231 kB] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main mysql-common all 5.5.47-0+deb7u1 [81.9 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main libmysqlclient18 amd64 5.5.47-0+deb7u1 [686 kB] Get:21 http://mirror-ubc.debian.org/debian/ wheezy/main libhpdf-2.2.1 amd64 2.2.1-1 [504 kB] Get:22 http://mirror-ubc.debian.org/debian/ wheezy/main libpq5 amd64 9.1.21-0+deb7u1 [140 kB] Get:23 http://mirror-ubc.debian.org/debian/ wheezy/main emboss-lib amd64 6.4.0-2 [2823 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8848 kB in 0s (16.6 MB/s) Selecting previously unselected package libssl1.0.0:amd64. (Reading database ... 6768 files and directories currently installed.) Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3.1_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. Unpacking libgcrypt11:amd64 (from .../libgcrypt11_1.5.0-5+deb7u4_amd64.deb) ... Selecting previously unselected package libp11-kit0:amd64. Unpacking libp11-kit0:amd64 (from .../libp11-kit0_0.12-3_amd64.deb) ... Selecting previously unselected package libtasn1-3:amd64. Unpacking libtasn1-3:amd64 (from .../libtasn1-3_2.13-2+deb7u2_amd64.deb) ... Selecting previously unselected package libgnutls26:amd64. Unpacking libgnutls26:amd64 (from .../libgnutls26_2.12.20-8+deb7u5_amd64.deb) ... Selecting previously unselected package libkeyutils1:amd64. Unpacking libkeyutils1:amd64 (from .../libkeyutils1_1.5.5-3+deb7u1_amd64.deb) ... Selecting previously unselected package libkrb5support0:amd64. Unpacking libkrb5support0:amd64 (from .../libkrb5support0_1.10.1+dfsg-5+deb7u7_amd64.deb) ... Selecting previously unselected package libk5crypto3:amd64. Unpacking libk5crypto3:amd64 (from .../libk5crypto3_1.10.1+dfsg-5+deb7u7_amd64.deb) ... Selecting previously unselected package libkrb5-3:amd64. Unpacking libkrb5-3:amd64 (from .../libkrb5-3_1.10.1+dfsg-5+deb7u7_amd64.deb) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Unpacking libgssapi-krb5-2:amd64 (from .../libgssapi-krb5-2_1.10.1+dfsg-5+deb7u7_amd64.deb) ... Selecting previously unselected package libsasl2-2:amd64. Unpacking libsasl2-2:amd64 (from .../libsasl2-2_2.1.25.dfsg1-6+deb7u1_amd64.deb) ... Selecting previously unselected package libldap-2.4-2:amd64. Unpacking libldap-2.4-2:amd64 (from .../libldap-2.4-2_2.4.31-2+deb7u2_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libfreetype6:amd64. Unpacking libfreetype6:amd64 (from .../libfreetype6_2.4.9-1.1+deb7u3_amd64.deb) ... Selecting previously unselected package libjpeg8:amd64. Unpacking libjpeg8:amd64 (from .../libjpeg8_8d-1+deb7u1_amd64.deb) ... Selecting previously unselected package libpng12-0:amd64. Unpacking libpng12-0:amd64 (from .../libpng12-0_1.2.49-1+deb7u2_amd64.deb) ... Selecting previously unselected package libgd2-noxpm:amd64. Unpacking libgd2-noxpm:amd64 (from .../libgd2-noxpm_2.0.36~rc1~dfsg-6.1+deb7u2_amd64.deb) ... Selecting previously unselected package mysql-common. Unpacking mysql-common (from .../mysql-common_5.5.47-0+deb7u1_all.deb) ... Selecting previously unselected package libmysqlclient18:amd64. Unpacking libmysqlclient18:amd64 (from .../libmysqlclient18_5.5.47-0+deb7u1_amd64.deb) ... Selecting previously unselected package libhpdf-2.2.1. Unpacking libhpdf-2.2.1 (from .../libhpdf-2.2.1_2.2.1-1_amd64.deb) ... Selecting previously unselected package libpq5. Unpacking libpq5 (from .../libpq5_9.1.21-0+deb7u1_amd64.deb) ... Selecting previously unselected package emboss-lib. Unpacking emboss-lib (from .../emboss-lib_6.4.0-2_amd64.deb) ... Setting up libssl1.0.0:amd64 (1.0.1e-2+deb7u20) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2+deb7u2) ... Setting up libgnutls26:amd64 (2.12.20-8+deb7u5) ... Setting up libkeyutils1:amd64 (1.5.5-3+deb7u1) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-5+deb7u7) ... Setting up libsasl2-2:amd64 (2.1.25.dfsg1-6+deb7u1) ... Setting up libldap-2.4-2:amd64 (2.4.31-2+deb7u2) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u2) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u3) ... Setting up libjpeg8:amd64 (8d-1+deb7u1) ... Setting up libpng12-0:amd64 (1.2.49-1+deb7u2) ... Setting up libgd2-noxpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Setting up mysql-common (5.5.47-0+deb7u1) ... Setting up libmysqlclient18:amd64 (5.5.47-0+deb7u1) ... Setting up libhpdf-2.2.1 (2.2.1-1) ... Setting up libpq5 (9.1.21-0+deb7u1) ... Setting up emboss-lib (6.4.0-2) ... 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', '-y', 'install', 'emboss-lib'] 0m8.9s INFO: Running scripts post_install 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_install_exceptions'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_install_exceptions'] 0m8.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m9.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m9.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpg__jrB to wheezy-lts 0m9.3s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main deb http://security.debian.org wheezy/updates main 0m9.3s INFO: Running scripts pre_distupgrade 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_distupgrade_wheezy'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_distupgrade_wheezy'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', 'update'] 0m11.3s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Get:1 http://security.debian.org wheezy/updates Release.gpg [1601 B] Get:2 http://security.debian.org wheezy/updates Release [52.3 kB] Get:3 http://security.debian.org wheezy/updates/main amd64 Packages [589 kB] Get:4 http://security.debian.org wheezy/updates/main Translation-en [338 kB] Fetched 981 kB in 1s (957 kB/s) Reading package lists... 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', 'update'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', '-yf', 'dist-upgrade'] 0m17.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bash gnupg gpgv libc-bin libc6 libdb5.1 libexpat1 libfreetype6 libgcrypt11 libgd2-noxpm libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libmysqlclient18 libpq5 libssl1.0.0 libtasn1-3 login multiarch-support mysql-common passwd perl-base sensible-utils tar tzdata 27 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 19.7 MB of archives. After this operation, 758 kB of additional disk space will be used. Get:1 http://security.debian.org/ wheezy/updates/main bash amd64 4.2+dfsg-0.1+deb7u4 [1499 kB] Get:2 http://security.debian.org/ wheezy/updates/main login amd64 1:4.1.5.1-1+deb7u1 [984 kB] Get:3 http://security.debian.org/ wheezy/updates/main perl-base amd64 5.14.2-21+deb7u6 [1534 kB] Get:4 http://security.debian.org/ wheezy/updates/main tar amd64 1.26+dfsg-0.1+deb7u1 [984 kB] Get:5 http://security.debian.org/ wheezy/updates/main libc-bin amd64 2.13-38+deb7u12 [1275 kB] Get:6 http://security.debian.org/ wheezy/updates/main libc6 amd64 2.13-38+deb7u12 [4226 kB] Get:7 http://security.debian.org/ wheezy/updates/main libdb5.1 amd64 5.1.29-5+deb7u1 [723 kB] Get:8 http://security.debian.org/ wheezy/updates/main libgcrypt11 amd64 1.5.0-5+deb7u6 [301 kB] Get:9 http://security.debian.org/ wheezy/updates/main libssl1.0.0 amd64 1.0.1t-1+deb7u4 [1279 kB] Get:10 http://security.debian.org/ wheezy/updates/main libtasn1-3 amd64 2.13-2+deb7u5 [68.9 kB] Get:11 http://security.debian.org/ wheezy/updates/main libk5crypto3 amd64 1.10.1+dfsg-5+deb7u9 [114 kB] Get:12 http://security.debian.org/ wheezy/updates/main libgssapi-krb5-2 amd64 1.10.1+dfsg-5+deb7u9 [150 kB] Get:13 http://security.debian.org/ wheezy/updates/main libkrb5-3 amd64 1.10.1+dfsg-5+deb7u9 [394 kB] Get:14 http://security.debian.org/ wheezy/updates/main libkrb5support0 amd64 1.10.1+dfsg-5+deb7u9 [50.7 kB] Get:15 http://security.debian.org/ wheezy/updates/main libexpat1 amd64 2.1.0-1+deb7u5 [139 kB] Get:16 http://security.debian.org/ wheezy/updates/main libfreetype6 amd64 2.4.9-1.1+deb7u7 [454 kB] Get:17 http://security.debian.org/ wheezy/updates/main libgd2-noxpm amd64 2.0.36~rc1~dfsg-6.1+deb7u11 [234 kB] Get:18 http://security.debian.org/ wheezy/updates/main libldap-2.4-2 amd64 2.4.31-2+deb7u3 [244 kB] Get:19 http://security.debian.org/ wheezy/updates/main mysql-common all 5.5.60-0+deb7u1 [75.2 kB] Get:20 http://security.debian.org/ wheezy/updates/main libmysqlclient18 amd64 5.5.60-0+deb7u1 [682 kB] Get:21 http://security.debian.org/ wheezy/updates/main gpgv amd64 1.4.12-7+deb7u9 [229 kB] Get:22 http://security.debian.org/ wheezy/updates/main gnupg amd64 1.4.12-7+deb7u9 [1954 kB] Get:23 http://security.debian.org/ wheezy/updates/main passwd amd64 1:4.1.5.1-1+deb7u1 [1262 kB] Get:24 http://security.debian.org/ wheezy/updates/main sensible-utils all 0.0.7+deb7u1 [9000 B] Get:25 http://security.debian.org/ wheezy/updates/main tzdata all 2018e-0+deb7u1 [496 kB] Get:26 http://security.debian.org/ wheezy/updates/main multiarch-support amd64 2.13-38+deb7u12 [152 kB] Get:27 http://security.debian.org/ wheezy/updates/main libpq5 amd64 9.1.24lts2-0+deb7u2 [141 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.7 MB in 2s (9235 kB/s) (Reading database ... 7281 files and directories currently installed.) Preparing to replace bash 4.2+dfsg-0.1+deb7u3 (using .../bash_4.2+dfsg-0.1+deb7u4_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.2+dfsg-0.1+deb7u4) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 7281 files and directories currently installed.) Preparing to replace login 1:4.1.5.1-1 (using .../login_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.5.1-1+deb7u1) ... (Reading database ... 7281 files and directories currently installed.) Preparing to replace perl-base 5.14.2-21+deb7u3 (using .../perl-base_5.14.2-21+deb7u6_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-21+deb7u6) ... (Reading database ... 7281 files and directories currently installed.) Preparing to replace tar 1.26+dfsg-0.1 (using .../tar_1.26+dfsg-0.1+deb7u1_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.26+dfsg-0.1+deb7u1) ... (Reading database ... 7281 files and directories currently installed.) Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-38+deb7u12) ... (Reading database ... 7281 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.13-38+deb7u12) ... (Reading database ... 7281 files and directories currently installed.) Preparing to replace libdb5.1:amd64 5.1.29-5 (using .../libdb5.1_5.1.29-5+deb7u1_amd64.deb) ... Unpacking replacement libdb5.1:amd64 ... Setting up libdb5.1:amd64 (5.1.29-5+deb7u1) ... (Reading database ... 7281 files and directories currently installed.) Preparing to replace libgcrypt11:amd64 1.5.0-5+deb7u4 (using .../libgcrypt11_1.5.0-5+deb7u6_amd64.deb) ... Unpacking replacement libgcrypt11:amd64 ... Preparing to replace libssl1.0.0:amd64 1.0.1e-2+deb7u20 (using .../libssl1.0.0_1.0.1t-1+deb7u4_amd64.deb) ... Unpacking replacement libssl1.0.0:amd64 ... Preparing to replace libtasn1-3:amd64 2.13-2+deb7u2 (using .../libtasn1-3_2.13-2+deb7u5_amd64.deb) ... Unpacking replacement libtasn1-3:amd64 ... Preparing to replace libk5crypto3:amd64 1.10.1+dfsg-5+deb7u7 (using .../libk5crypto3_1.10.1+dfsg-5+deb7u9_amd64.deb) ... Unpacking replacement libk5crypto3:amd64 ... Preparing to replace libgssapi-krb5-2:amd64 1.10.1+dfsg-5+deb7u7 (using .../libgssapi-krb5-2_1.10.1+dfsg-5+deb7u9_amd64.deb) ... Unpacking replacement libgssapi-krb5-2:amd64 ... Preparing to replace libkrb5-3:amd64 1.10.1+dfsg-5+deb7u7 (using .../libkrb5-3_1.10.1+dfsg-5+deb7u9_amd64.deb) ... Unpacking replacement libkrb5-3:amd64 ... Preparing to replace libkrb5support0:amd64 1.10.1+dfsg-5+deb7u7 (using .../libkrb5support0_1.10.1+dfsg-5+deb7u9_amd64.deb) ... Unpacking replacement libkrb5support0:amd64 ... Preparing to replace libexpat1:amd64 2.1.0-1+deb7u2 (using .../libexpat1_2.1.0-1+deb7u5_amd64.deb) ... Unpacking replacement libexpat1:amd64 ... Preparing to replace libfreetype6:amd64 2.4.9-1.1+deb7u3 (using .../libfreetype6_2.4.9-1.1+deb7u7_amd64.deb) ... Unpacking replacement libfreetype6:amd64 ... Preparing to replace libgd2-noxpm:amd64 2.0.36~rc1~dfsg-6.1+deb7u2 (using .../libgd2-noxpm_2.0.36~rc1~dfsg-6.1+deb7u11_amd64.deb) ... Unpacking replacement libgd2-noxpm:amd64 ... Preparing to replace libldap-2.4-2:amd64 2.4.31-2+deb7u2 (using .../libldap-2.4-2_2.4.31-2+deb7u3_amd64.deb) ... Unpacking replacement libldap-2.4-2:amd64 ... Preparing to replace mysql-common 5.5.47-0+deb7u1 (using .../mysql-common_5.5.60-0+deb7u1_all.deb) ... Unpacking replacement mysql-common ... Preparing to replace libmysqlclient18:amd64 5.5.47-0+deb7u1 (using .../libmysqlclient18_5.5.60-0+deb7u1_amd64.deb) ... Unpacking replacement libmysqlclient18:amd64 ... Preparing to replace gpgv 1.4.12-7+deb7u7 (using .../gpgv_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.12-7+deb7u9) ... (Reading database ... 7281 files and directories currently installed.) Preparing to replace gnupg 1.4.12-7+deb7u7 (using .../gnupg_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.12-7+deb7u9) ... (Reading database ... 7281 files and directories currently installed.) Preparing to replace passwd 1:4.1.5.1-1 (using .../passwd_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.5.1-1+deb7u1) ... (Reading database ... 7281 files and directories currently installed.) Preparing to replace sensible-utils 0.0.7 (using .../sensible-utils_0.0.7+deb7u1_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.7+deb7u1) ... (Reading database ... 7281 files and directories currently installed.) Preparing to replace tzdata 2016d-0+deb7u1 (using .../tzdata_2018e-0+deb7u1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2018e-0+deb7u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Aug 5 01:31:21 UTC 2018. Universal Time is now: Sun Aug 5 01:31:21 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 7293 files and directories currently installed.) Preparing to replace multiarch-support 2.13-38+deb7u10 (using .../multiarch-support_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-38+deb7u12) ... (Reading database ... 7293 files and directories currently installed.) Preparing to replace libpq5 9.1.21-0+deb7u1 (using .../libpq5_9.1.24lts2-0+deb7u2_amd64.deb) ... Unpacking replacement libpq5 ... Setting up libgcrypt11:amd64 (1.5.0-5+deb7u6) ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb7u4) ... Setting up libtasn1-3:amd64 (2.13-2+deb7u5) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-5+deb7u9) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-5+deb7u9) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-5+deb7u9) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-5+deb7u9) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u5) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u7) ... Setting up libgd2-noxpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u11) ... Setting up libldap-2.4-2:amd64 (2.4.31-2+deb7u3) ... Setting up mysql-common (5.5.60-0+deb7u1) ... Setting up libmysqlclient18:amd64 (5.5.60-0+deb7u1) ... Setting up libpq5 (9.1.24lts2-0+deb7u2) ... 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', '-yf', 'dist-upgrade'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m17.2s DUMP: fb1ccc436f778eea085ae099e3151787 - 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'show', '--no-all-versions', 'emboss-lib'] 0m17.2s DUMP: Package: emboss-lib Source: emboss Version: 6.4.0-2 Installed-Size: 14233 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: libajax5, libajax5-dev, libajax6, libajax6-dev, libnucleus5, libnucleus5-dev, libnucleus6, libnucleus6-dev Depends: libc6 (>= 2.11), libexpat1 (>= 2.0.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libhpdf-2.2.1, libmysqlclient18 (>= 5.5.24+dfsg-1), libpng12-0 (>= 1.2.13-4), libpq5, zlib1g (>= 1:1.1.4) Conflicts: libajax5, libajax5-dev, libajax6, libajax6-dev, libnucleus5, libnucleus5-dev, libnucleus6, libnucleus6-dev Breaks: embassy-domainatrix (<= 0.1.0+20100721-3), embassy-domalign (<= 0.1.0+20100721-3), embassy-domsearch (<= 0.1.0++20100721-3), embassy-phylip (<= 3.69+20100721-3) Description-en: EMBOSS Libraries This package contains the core libraries of the European Molecular Biology Open Software Suite, EMBOSS. . AJAX covers standard data structures, including strings, sequences, file handles, queues, hashes, heaps, lists, dictionaries, trees and dynamic arrays. It also covers standard algorithms including comparisons, pattern matching, sorting, and iterators. AJAX will also provide a set of high level graphics functions suited to the needs of sequence analysis applications. . The NUCLEUS library provides higher-level functions specific to molecular sequence analysis, including sequence comparisons, translation, codon usage and annotation. . It also contains a eplplot, an EMBOSS, a fork of the plplot library. . In Debian, these libraries are to be considered private. Homepage: http://emboss.sourceforge.net Description-md5: 1a4b801fb90e6b942e8beea3b7049542 Tag: devel::lang:c, devel::library, field::biology, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::shared-lib Section: science Priority: optional Filename: pool/main/e/emboss/emboss-lib_6.4.0-2_amd64.deb Size: 2822990 MD5sum: 9595d07844be7ebe711eacb6d52bb42d SHA1: d291eca485b112beb7fd068b7398f2401d34a503 SHA256: 37e0d49f2adf50d8d26a2714bd100233ae165796a67a04124e3fc1aec8a59c52 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'show', '--no-all-versions', 'emboss-lib'] 0m17.2s INFO: apt-cache knows about the following packages: emboss-lib 0m17.2s INFO: Running scripts pre_install 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_database-server'] 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_database-server'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_exceptions'] 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_exceptions'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_extras'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_extras'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'policy'] 0m17.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'policy'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'policy', 'emboss-lib'] 0m17.3s DUMP: emboss-lib: Installed: 6.4.0-2 Candidate: 6.4.0-2 Version table: *** 6.4.0-2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'policy', 'emboss-lib'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', '-y', 'install', 'emboss-lib'] 0m17.5s DUMP: Reading package lists... Building dependency tree... Reading state information... emboss-lib is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', '-y', 'install', 'emboss-lib'] 0m17.5s INFO: Running scripts post_install 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_install_exceptions'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_install_exceptions'] 0m17.5s INFO: Running scripts post_distupgrade 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m17.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m17.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m18.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m18.4s INFO: Running scripts pre_install 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_database-server'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_database-server'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_exceptions'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_exceptions'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_extras'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_extras'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'policy'] 0m18.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'policy'] 0m18.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'policy', 'emboss-lib'] 0m18.5s DUMP: emboss-lib: Installed: 6.4.0-2 Candidate: 6.4.0-2 Version table: *** 6.4.0-2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-cache', 'policy', 'emboss-lib'] 0m18.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', '-y', 'install', 'emboss-lib=6.4.0-2'] 0m18.7s DUMP: Reading package lists... Building dependency tree... Reading state information... emboss-lib is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', '-y', 'install', 'emboss-lib=6.4.0-2'] 0m18.7s INFO: Running scripts post_install 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_install_exceptions'] 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_install_exceptions'] 0m18.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m19.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.3s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u4 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed emboss-lib emboss-lib 6.4.0-2 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u9 install ok installed gpgv gpgv 1.4.12-7+deb7u9 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u12 install ok installed libc6:amd64 libc6 2.13-38+deb7u12 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5+deb7u1 install ok installed libexpat1:amd64 libexpat1 2.1.0-1+deb7u5 install ok installed libfreetype6:amd64 libfreetype6 2.4.9-1.1+deb7u7 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libgcrypt11:amd64 libgcrypt11 1.5.0-5+deb7u6 install ok installed libgd2-noxpm:amd64 libgd2-noxpm 2.0.36~rc1~dfsg-6.1+deb7u11 install ok installed libgnutls26:amd64 libgnutls26 2.12.20-8+deb7u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.10-3.1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.10.1+dfsg-5+deb7u9 install ok installed libhpdf-2.2.1 libhpdf-2.2.1 2.2.1-1 install ok installed libjpeg8:amd64 libjpeg8 8d-1+deb7u1 install ok installed libk5crypto3:amd64 libk5crypto3 1.10.1+dfsg-5+deb7u9 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.5-3+deb7u1 install ok installed libkrb5-3:amd64 libkrb5-3 1.10.1+dfsg-5+deb7u9 install ok installed libkrb5support0:amd64 libkrb5support0 1.10.1+dfsg-5+deb7u9 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.31-2+deb7u3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libmysqlclient18:amd64 libmysqlclient18 5.5.60-0+deb7u1 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libp11-kit0:amd64 libp11-kit0 0.12-3 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libpng12-0:amd64 libpng12-0 1.2.49-1+deb7u2 install ok installed libpq5 libpq5 9.1.24lts2-0+deb7u2 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.25.dfsg1-6+deb7u1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb7u4 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtasn1-3:amd64 libtasn1-3 2.13-2+deb7u5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1+deb7u1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u12 install ok installed mysql-common mysql-common 5.5.60-0+deb7u1 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1+deb7u1 install ok installed perl-base perl-base 5.14.2-21+deb7u6 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7+deb7u1 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1+deb7u1 install ok installed tzdata tzdata 2018e-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpg__jrB', '-ac', '--ignore-obsolete'] 0m20.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpg__jrB', '-ac', '--ignore-obsolete'] 0m20.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.3s DUMP: 0.15.1 0m20.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.3s INFO: Running adequate version 0.15.1 now. 0m20.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'emboss-lib'] 0m20.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'emboss-lib'] 0m20.4s INFO: Running scripts pre_remove 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_remove_exceptions'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/pre_remove_exceptions'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', 'remove', 'libfreetype6:amd64', 'libgssapi-krb5-2:amd64', 'libgcrypt11:amd64', 'libgd2-noxpm:amd64', 'mysql-common', 'libjpeg8:amd64', 'libkeyutils1:amd64', 'libtasn1-3:amd64', 'libkrb5support0:amd64', 'libssl1.0.0:amd64', 'libhpdf-2.2.1', 'libpq5', 'libexpat1:amd64', 'libgpg-error0:amd64', 'libkrb5-3:amd64', 'libpng12-0:amd64', 'libmysqlclient18:amd64', 'libp11-kit0:amd64', 'libgnutls26:amd64', 'libsasl2-2:amd64', 'libk5crypto3:amd64', 'libldap-2.4-2:amd64', 'emboss-lib'] 0m21.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: emboss-lib libexpat1 libfreetype6 libgcrypt11 libgd2-noxpm libgnutls26 libgpg-error0 libgssapi-krb5-2 libhpdf-2.2.1 libjpeg8 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmysqlclient18 libp11-kit0 libpng12-0 libpq5 libsasl2-2 libssl1.0.0 libtasn1-3 mysql-common 0 upgraded, 0 newly installed, 23 to remove and 0 not upgraded. After this operation, 30.6 MB disk space will be freed. (Reading database ... 7293 files and directories currently installed.) Removing emboss-lib ... Removing libexpat1:amd64 ... Removing libgd2-noxpm:amd64 ... Removing libfreetype6:amd64 ... Removing libpq5 ... Removing libldap-2.4-2:amd64 ... Removing libgnutls26:amd64 ... Removing libgcrypt11:amd64 ... Removing libgpg-error0:amd64 ... Removing libgssapi-krb5-2:amd64 ... Removing libhpdf-2.2.1 ... Removing libjpeg8:amd64 ... Removing libkrb5-3:amd64 ... Removing libk5crypto3:amd64 ... Removing libkrb5support0:amd64 ... Removing libkeyutils1:amd64 ... Removing libmysqlclient18:amd64 ... Removing libp11-kit0:amd64 ... Removing libpng12-0:amd64 ... Removing libsasl2-2:amd64 ... Removing libssl1.0.0:amd64 ... Removing libtasn1-3:amd64 ... Removing mysql-common ... 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', 'remove', 'libfreetype6:amd64', 'libgssapi-krb5-2:amd64', 'libgcrypt11:amd64', 'libgd2-noxpm:amd64', 'mysql-common', 'libjpeg8:amd64', 'libkeyutils1:amd64', 'libtasn1-3:amd64', 'libkrb5support0:amd64', 'libssl1.0.0:amd64', 'libhpdf-2.2.1', 'libpq5', 'libexpat1:amd64', 'libgpg-error0:amd64', 'libkrb5-3:amd64', 'libpng12-0:amd64', 'libmysqlclient18:amd64', 'libp11-kit0:amd64', 'libgnutls26:amd64', 'libsasl2-2:amd64', 'libk5crypto3:amd64', 'libldap-2.4-2:amd64', 'emboss-lib'] 0m21.5s INFO: Running scripts post_remove 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_remove_exceptions'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_remove_exceptions'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg', '--purge', 'libfreetype6:amd64', 'libgssapi-krb5-2:amd64', 'libgcrypt11:amd64', 'libgd2-noxpm:amd64', 'mysql-common', 'libjpeg8:amd64', 'libkeyutils1:amd64', 'libtasn1-3:amd64', 'libkrb5support0:amd64', 'libssl1.0.0:amd64', 'libhpdf-2.2.1', 'libpq5', 'libexpat1:amd64', 'libgpg-error0:amd64', 'libkrb5-3:amd64', 'libpng12-0:amd64', 'libmysqlclient18:amd64', 'libp11-kit0:amd64', 'libgnutls26:amd64', 'libsasl2-2:amd64', 'libk5crypto3:amd64', 'libldap-2.4-2:amd64'] 0m21.7s DUMP: (Reading database ... 6786 files and directories currently installed.) Removing libfreetype6:amd64 ... Purging configuration files for libfreetype6:amd64 ... Removing libgssapi-krb5-2:amd64 ... Purging configuration files for libgssapi-krb5-2:amd64 ... Removing libgcrypt11:amd64 ... Purging configuration files for libgcrypt11:amd64 ... Removing libgd2-noxpm:amd64 ... Purging configuration files for libgd2-noxpm:amd64 ... Removing mysql-common ... Purging configuration files for mysql-common ... dpkg: warning: ignoring request to remove libjpeg8 which isn't installed Removing libkeyutils1:amd64 ... Purging configuration files for libkeyutils1:amd64 ... Removing libtasn1-3:amd64 ... Purging configuration files for libtasn1-3:amd64 ... Removing libkrb5support0:amd64 ... Purging configuration files for libkrb5support0:amd64 ... Removing libssl1.0.0:amd64 ... Purging configuration files for libssl1.0.0:amd64 ... Removing libhpdf-2.2.1 ... Purging configuration files for libhpdf-2.2.1 ... Removing libpq5 ... Purging configuration files for libpq5 ... Removing libexpat1:amd64 ... Purging configuration files for libexpat1:amd64 ... Removing libgpg-error0:amd64 ... Purging configuration files for libgpg-error0:amd64 ... Removing libkrb5-3:amd64 ... Purging configuration files for libkrb5-3:amd64 ... Removing libpng12-0:amd64 ... Purging configuration files for libpng12-0:amd64 ... Removing libmysqlclient18:amd64 ... Purging configuration files for libmysqlclient18:amd64 ... Removing libp11-kit0:amd64 ... Purging configuration files for libp11-kit0:amd64 ... Removing libgnutls26:amd64 ... Purging configuration files for libgnutls26:amd64 ... Removing libsasl2-2:amd64 ... Purging configuration files for libsasl2-2:amd64 ... Removing libk5crypto3:amd64 ... Purging configuration files for libk5crypto3:amd64 ... Removing libldap-2.4-2:amd64 ... Purging configuration files for libldap-2.4-2:amd64 ... 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg', '--purge', 'libfreetype6:amd64', 'libgssapi-krb5-2:amd64', 'libgcrypt11:amd64', 'libgd2-noxpm:amd64', 'mysql-common', 'libjpeg8:amd64', 'libkeyutils1:amd64', 'libtasn1-3:amd64', 'libkrb5support0:amd64', 'libssl1.0.0:amd64', 'libhpdf-2.2.1', 'libpq5', 'libexpat1:amd64', 'libgpg-error0:amd64', 'libkrb5-3:amd64', 'libpng12-0:amd64', 'libmysqlclient18:amd64', 'libp11-kit0:amd64', 'libgnutls26:amd64', 'libsasl2-2:amd64', 'libk5crypto3:amd64', 'libldap-2.4-2:amd64'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg', '--purge', 'emboss-lib'] 0m21.7s DUMP: (Reading database ... 6780 files and directories currently installed.) Removing emboss-lib ... Purging configuration files for emboss-lib ... 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg', '--purge', 'emboss-lib'] 0m21.7s INFO: Running scripts post_purge 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_purge_exceptions'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_purge_exceptions'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg', '--purge', '--pending'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg', '--purge', '--pending'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg', '--remove', '--pending'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg', '--remove', '--pending'] 0m21.8s INFO: Running scripts post_test 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_test_exceptions'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'tmp/scripts/post_test_exceptions'] 0m21.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m22.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg-divert', '--list'] 0m22.3s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'dpkg-divert', '--list'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', 'clean'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg__jrB', 'apt-get', 'clean'] 0m22.3s DEBUG: Recording chroot state 0m23.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg__jrB/run/shm'] 0m23.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg__jrB/run/shm'] 0m23.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/console'] 0m23.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/console'] 0m23.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/ptmx'] 0m23.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/ptmx'] 0m23.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/pts'] 0m23.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg__jrB/dev/pts'] 0m23.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg__jrB/proc'] 0m23.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg__jrB/proc'] 0m23.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m23.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpg__jrB'] 0m23.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpg__jrB 0m23.7s INFO: PASS: Upgrading between Debian distributions. 0m23.7s INFO: PASS: All tests. 0m23.7s INFO: piuparts run ends. ret=0 End: 2018-08-05 01:31:28 UTC