Start: 2018-09-28 11:38:56 UTC [wheezy] Package: gbrowse-calign Source: gbrowse Version: 2.48~dfsg-1 Installed-Size: 122 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.14.2-7), perlapi-5.14.2, libc6 (>= 2.3), gbrowse Description: CAlign helper Homepage: http://www.gbrowse.org/ Description-md5: 7aa5fca05830bdeaf9c3c3aa626a2408 Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.48~dfsg-1_amd64.deb Size: 35584 MD5sum: 42ccf980d63bef8c4ca359154496963d SHA1: cf95c84b3fda04873c4e62b9318ac9712c3e7fad SHA256: 8fc8afcf6a12b6b7c06d1d8ab824e9182ceaf69fa63b03b6bb20244a6937b8fd [wheezy-lts] Package: gbrowse-calign Source: gbrowse Version: 2.48~dfsg-1 Installed-Size: 122 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.14.2-7), perlapi-5.14.2, libc6 (>= 2.3), gbrowse Description: CAlign helper Homepage: http://www.gbrowse.org/ Description-md5: 7aa5fca05830bdeaf9c3c3aa626a2408 Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.48~dfsg-1_amd64.deb Size: 35584 MD5sum: 42ccf980d63bef8c4ca359154496963d SHA1: cf95c84b3fda04873c4e62b9318ac9712c3e7fad SHA256: 8fc8afcf6a12b6b7c06d1d8ab824e9182ceaf69fa63b03b6bb20244a6937b8fd Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt 'gbrowse-calign=2.48~dfsg-1' 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.93~201809241020~0.92-22-g1ffcf128 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt 'gbrowse-calign=2.48~dfsg-1' 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-8-amd64 #1 SMP Debian 4.9.110-3+deb9u4 (2018-08-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpCK0nkj 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpCK0nkj 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/run/shm'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/run/shm'] 0m2.2s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m2.2s DEBUG: Created policy-rc.d and chmodded it. 0m2.2s DEBUG: Created resolv.conf. 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpCK0nkj/tmp/scripts/ 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmpCK0nkj/tmp/scripts/ 0m2.2s INFO: Running scripts post_chroot_unpack 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', 'update'] 0m4.8s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Reading package lists... 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', 'update'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', '-yf', 'dist-upgrade'] 0m5.1s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', '-yf', 'dist-upgrade'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.4s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.4s INFO: Running scripts post_setup 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_dummy_users'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_dummy_users'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_forbid_home'] 0m6.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_forbid_home'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_minimize'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_minimize'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m7.5s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 335 kB of archives. After this operation, 1327 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 335 kB in 0s (22.2 MB/s) Selecting previously unselected package adduser. (Reading database ... 6639 files and directories currently installed.) Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up adduser (3.113+nmu3) ... Setting up ucf (3.0025+nmu3) ... 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_zz_backports'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_setup_zz_backports'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.5s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.5s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m8.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m8.8s INFO: Running scripts is_testable 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/is_testable_uninstallable'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/is_testable_uninstallable'] 0m8.8s INFO: Running scripts pre_test 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_test_exceptions'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_test_exceptions'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_test_root_password'] 0m8.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_test_root_password'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 0m8.8s DUMP: Package: gbrowse-calign Source: gbrowse Version: 2.48~dfsg-1 Installed-Size: 122 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.14.2-7), perlapi-5.14.2, libc6 (>= 2.3), gbrowse Description-en: CAlign helper This package provides the CAlign helper for use with Realign. It speeds up Smith-Waterman alignment. Homepage: http://www.gbrowse.org/ Description-md5: 7aa5fca05830bdeaf9c3c3aa626a2408 Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.48~dfsg-1_amd64.deb Size: 35584 MD5sum: 42ccf980d63bef8c4ca359154496963d SHA1: cf95c84b3fda04873c4e62b9318ac9712c3e7fad SHA256: 8fc8afcf6a12b6b7c06d1d8ab824e9182ceaf69fa63b03b6bb20244a6937b8fd 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 0m8.8s INFO: apt-cache knows about the following packages: gbrowse-calign 0m8.8s INFO: Running scripts pre_install 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_exceptions'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_exceptions'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_extras'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_extras'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'policy'] 0m8.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'policy'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'policy', 'gbrowse-calign'] 0m8.9s DUMP: gbrowse-calign: Installed: (none) Candidate: 2.48~dfsg-1 Version table: 2.48~dfsg-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'policy', 'gbrowse-calign'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', '-y', 'install', 'gbrowse-calign'] 0m19.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bioperl ca-certificates fontconfig-config gbrowse libbio-graphics-perl libbio-perl-perl libcgi-session-perl libclass-isa-perl libdata-stag-perl libdbd-sqlite3-perl libdbi-perl libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgd-gd2-perl libgd2-xpm libgdbm3 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-socket-ssl-perl libio-string-perl libjpeg8 libjs-prototype libjs-scriptaculous libjson-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libpng12-0 libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libswitch-perl libterm-readkey-perl libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 netbase openssl perl perl-modules sqlite3 ttf-dejavu-core Suggested packages: groff-base gbrowse-data libfile-nfslock-perl libmath-random-perl libxml-sax-expatxs-perl libgd-tools libdata-dump-perl libjson-pp-perl libcrypt-ssleay-perl libmime-base64-perl libauthen-ntlm-perl libterm-readline-gnu-perl libterm-readline-perl-perl make libpod-plainer-perl sqlite3-doc Recommended packages: bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libapache-dbi-perl libxml-simple-perl libyaml-perl libace-perl liblist-moreutils-perl libxml-twig-perl libset-scalar-perl libbio-scf-perl libfile-spec-perl libgd-svg-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libgraph-perl libgraphviz-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libstorable-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk libxml-libxslt-perl libmldbm-perl libhtml-format-perl libio-socket-ip-perl libio-socket-inet6-perl javascript-common libjson-xs-perl libhtml-form-perl libmailtools-perl ifupdown The following NEW packages will be installed: bioperl ca-certificates fontconfig-config gbrowse gbrowse-calign libbio-graphics-perl libbio-perl-perl libcgi-session-perl libclass-isa-perl libdata-stag-perl libdbd-sqlite3-perl libdbi-perl libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgd-gd2-perl libgd2-xpm libgdbm3 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-socket-ssl-perl libio-string-perl libjpeg8 libjs-prototype libjs-scriptaculous libjson-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libpng12-0 libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libswitch-perl libterm-readkey-perl libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 netbase openssl perl perl-modules sqlite3 ttf-dejavu-core 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 28.1 MB of archives. After this operation, 82.7 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main libgdbm3 amd64 1.8.3-11 [46.9 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main libssl1.0.0 amd64 1.0.1e-2+deb7u20 [1263 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libsqlite3-0 amd64 3.7.13-1+deb7u2 [454 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main libfreetype6 amd64 2.4.9-1.1+deb7u3 [452 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main ttf-dejavu-core all 2.33-3 [1021 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main fontconfig-config all 2.9.0-7.1 [233 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libfontconfig1 amd64 2.9.0-7.1 [300 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libjpeg8 amd64 8d-1+deb7u1 [138 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libpng12-0 amd64 1.2.49-1+deb7u2 [191 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb1 amd64 1.8.1-2+deb7u1 [50.2 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-data all 2:1.5.0-1+deb7u2 [194 kB] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-6 amd64 2:1.5.0-1+deb7u2 [901 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main libxpm4 amd64 1:3.5.10-1 [49.4 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main libgd2-xpm amd64 2.0.36~rc1~dfsg-6.1+deb7u2 [234 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main netbase all 5.0 [20.1 kB] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main perl-modules all 5.14.2-21+deb7u3 [3444 kB] Get:21 http://mirror-ubc.debian.org/debian/ wheezy/main perl amd64 5.14.2-21+deb7u3 [4429 kB] Get:22 http://mirror-ubc.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:23 http://mirror-ubc.debian.org/debian/ wheezy/main libio-string-perl all 1.08-2 [12.0 kB] Get:24 http://mirror-ubc.debian.org/debian/ wheezy/main libdata-stag-perl all 0.11-2 [509 kB] Get:25 http://mirror-ubc.debian.org/debian/ wheezy/main libbio-perl-perl all 1.6.901-3 [6143 kB] Get:26 http://mirror-ubc.debian.org/debian/ wheezy/main bioperl all 1.6.901-3 [467 kB] Get:27 http://mirror-ubc.debian.org/debian/ wheezy/main openssl amd64 1.0.1e-2+deb7u20 [702 kB] Get:28 http://mirror-ubc.debian.org/debian/ wheezy/main ca-certificates all 20130119+deb7u1 [210 kB] Get:29 http://mirror-ubc.debian.org/debian/ wheezy/main libgd-gd2-perl amd64 1:2.46-3+b1 [200 kB] Get:30 http://mirror-ubc.debian.org/debian/ wheezy/main libbio-graphics-perl all 2.26-1 [669 kB] Get:31 http://mirror-ubc.debian.org/debian/ wheezy/main libcgi-session-perl all 4.46-1 [123 kB] Get:32 http://mirror-ubc.debian.org/debian/ wheezy/main libjson-perl all 2.53-1 [99.9 kB] Get:33 http://mirror-ubc.debian.org/debian/ wheezy/main libstatistics-descriptive-perl all 3.0603-1 [42.5 kB] Get:34 http://mirror-ubc.debian.org/debian/ wheezy/main libencode-locale-perl all 1.03-1 [13.6 kB] Get:35 http://mirror-ubc.debian.org/debian/ wheezy/main libtimedate-perl all 1.2000-1 [41.2 kB] Get:36 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-date-perl all 6.02-1 [10.7 kB] Get:37 http://mirror-ubc.debian.org/debian/ wheezy/main libfile-listing-perl all 6.04-1 [10.3 kB] Get:38 http://mirror-ubc.debian.org/debian/ wheezy/main liburi-perl all 1.60-1 [100 kB] Get:39 http://mirror-ubc.debian.org/debian/ wheezy/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:40 http://mirror-ubc.debian.org/debian/ wheezy/main libhtml-parser-perl amd64 3.69-2 [114 kB] Get:41 http://mirror-ubc.debian.org/debian/ wheezy/main libhtml-tree-perl all 5.02-1 [225 kB] Get:42 http://mirror-ubc.debian.org/debian/ wheezy/main liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:43 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-message-perl all 6.03-1 [78.5 kB] Get:44 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-cookies-perl all 6.00-2 [23.5 kB] Get:45 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:46 http://mirror-ubc.debian.org/debian/ wheezy/main libnet-ssleay-perl amd64 1.48-1+b1 [335 kB] Get:47 http://mirror-ubc.debian.org/debian/ wheezy/main libio-socket-ssl-perl all 1.76-2 [68.0 kB] Get:48 http://mirror-ubc.debian.org/debian/ wheezy/main libnet-http-perl all 6.03-2 [24.3 kB] Get:49 http://mirror-ubc.debian.org/debian/ wheezy/main liblwp-protocol-https-perl all 6.03-1 [7580 B] Get:50 http://mirror-ubc.debian.org/debian/ wheezy/main libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:51 http://mirror-ubc.debian.org/debian/ wheezy/main libwww-perl all 6.04-1 [203 kB] Get:52 http://mirror-ubc.debian.org/debian/ wheezy/main libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:53 http://mirror-ubc.debian.org/debian/ wheezy/main libterm-readkey-perl amd64 2.30-4+b2 [32.2 kB] Get:54 http://mirror-ubc.debian.org/debian/ wheezy/main sqlite3 amd64 3.7.13-1+deb7u2 [119 kB] Get:55 http://mirror-ubc.debian.org/debian/ wheezy/main libdbi-perl amd64 1.622-1+deb7u1 [892 kB] Get:56 http://mirror-ubc.debian.org/debian/ wheezy/main libdbd-sqlite3-perl amd64 1.37-1 [113 kB] Get:57 http://mirror-ubc.debian.org/debian/ wheezy/main libjs-prototype all 1.7.0-2 [40.9 kB] Get:58 http://mirror-ubc.debian.org/debian/ wheezy/main libjs-scriptaculous all 1.9.0-2 [129 kB] Get:59 http://mirror-ubc.debian.org/debian/ wheezy/main gbrowse all 2.48~dfsg-1 [2634 kB] Get:60 http://mirror-ubc.debian.org/debian/ wheezy/main gbrowse-calign amd64 2.48~dfsg-1 [35.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.1 MB in 1s (20.1 MB/s) Selecting previously unselected package libgdbm3:amd64. (Reading database ... 6768 files and directories currently installed.) Unpacking libgdbm3:amd64 (from .../libgdbm3_1.8.3-11_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package libsqlite3-0:amd64. Unpacking libsqlite3-0:amd64 (from .../libsqlite3-0_3.7.13-1+deb7u2_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libfreetype6:amd64. Unpacking libfreetype6:amd64 (from .../libfreetype6_2.4.9-1.1+deb7u3_amd64.deb) ... Selecting previously unselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-3_all.deb) ... Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ... Selecting previously unselected package libfontconfig1:amd64. Unpacking libfontconfig1:amd64 (from .../libfontconfig1_2.9.0-7.1_amd64.deb) ... Selecting previously unselected package libjpeg8:amd64. Unpacking libjpeg8:amd64 (from .../libjpeg8_8d-1+deb7u1_amd64.deb) ... Selecting previously unselected package libpng12-0:amd64. Unpacking libpng12-0:amd64 (from .../libpng12-0_1.2.49-1+deb7u2_amd64.deb) ... Selecting previously unselected package libxau6:amd64. Unpacking libxau6:amd64 (from .../libxau6_1%3a1.0.7-1_amd64.deb) ... Selecting previously unselected package libxdmcp6:amd64. Unpacking libxdmcp6:amd64 (from .../libxdmcp6_1%3a1.1.1-1_amd64.deb) ... Selecting previously unselected package libxcb1:amd64. Unpacking libxcb1:amd64 (from .../libxcb1_1.8.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1+deb7u2_all.deb) ... Selecting previously unselected package libx11-6:amd64. Unpacking libx11-6:amd64 (from .../libx11-6_2%3a1.5.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package libxpm4:amd64. Unpacking libxpm4:amd64 (from .../libxpm4_1%3a3.5.10-1_amd64.deb) ... Selecting previously unselected package libgd2-xpm:amd64. Unpacking libgd2-xpm:amd64 (from .../libgd2-xpm_2.0.36~rc1~dfsg-6.1+deb7u2_amd64.deb) ... Selecting previously unselected package netbase. Unpacking netbase (from .../archives/netbase_5.0_all.deb) ... Selecting previously unselected package libclass-isa-perl. Unpacking libclass-isa-perl (from .../libclass-isa-perl_0.36-3_all.deb) ... Selecting previously unselected package perl-modules. Unpacking perl-modules (from .../perl-modules_5.14.2-21+deb7u3_all.deb) ... Selecting previously unselected package perl. Unpacking perl (from .../perl_5.14.2-21+deb7u3_amd64.deb) ... Selecting previously unselected package libswitch-perl. Unpacking libswitch-perl (from .../libswitch-perl_2.16-2_all.deb) ... Selecting previously unselected package libio-string-perl. Unpacking libio-string-perl (from .../libio-string-perl_1.08-2_all.deb) ... Selecting previously unselected package libdata-stag-perl. Unpacking libdata-stag-perl (from .../libdata-stag-perl_0.11-2_all.deb) ... Selecting previously unselected package libbio-perl-perl. Unpacking libbio-perl-perl (from .../libbio-perl-perl_1.6.901-3_all.deb) ... Selecting previously unselected package bioperl. Unpacking bioperl (from .../bioperl_1.6.901-3_all.deb) ... Selecting previously unselected package openssl. Unpacking openssl (from .../openssl_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package ca-certificates. Unpacking ca-certificates (from .../ca-certificates_20130119+deb7u1_all.deb) ... Selecting previously unselected package libgd-gd2-perl. Unpacking libgd-gd2-perl (from .../libgd-gd2-perl_1%3a2.46-3+b1_amd64.deb) ... Selecting previously unselected package libbio-graphics-perl. Unpacking libbio-graphics-perl (from .../libbio-graphics-perl_2.26-1_all.deb) ... Selecting previously unselected package libcgi-session-perl. Unpacking libcgi-session-perl (from .../libcgi-session-perl_4.46-1_all.deb) ... Selecting previously unselected package libjson-perl. Unpacking libjson-perl (from .../libjson-perl_2.53-1_all.deb) ... Selecting previously unselected package libstatistics-descriptive-perl. Unpacking libstatistics-descriptive-perl (from .../libstatistics-descriptive-perl_3.0603-1_all.deb) ... Selecting previously unselected package libencode-locale-perl. Unpacking libencode-locale-perl (from .../libencode-locale-perl_1.03-1_all.deb) ... Selecting previously unselected package libtimedate-perl. Unpacking libtimedate-perl (from .../libtimedate-perl_1.2000-1_all.deb) ... Selecting previously unselected package libhttp-date-perl. Unpacking libhttp-date-perl (from .../libhttp-date-perl_6.02-1_all.deb) ... Selecting previously unselected package libfile-listing-perl. Unpacking libfile-listing-perl (from .../libfile-listing-perl_6.04-1_all.deb) ... Selecting previously unselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.60-1_all.deb) ... Selecting previously unselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously unselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.69-2_amd64.deb) ... Selecting previously unselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_5.02-1_all.deb) ... Selecting previously unselected package liblwp-mediatypes-perl. Unpacking liblwp-mediatypes-perl (from .../liblwp-mediatypes-perl_6.02-1_all.deb) ... Selecting previously unselected package libhttp-message-perl. Unpacking libhttp-message-perl (from .../libhttp-message-perl_6.03-1_all.deb) ... Selecting previously unselected package libhttp-cookies-perl. Unpacking libhttp-cookies-perl (from .../libhttp-cookies-perl_6.00-2_all.deb) ... Selecting previously unselected package libhttp-negotiate-perl. Unpacking libhttp-negotiate-perl (from .../libhttp-negotiate-perl_6.00-2_all.deb) ... Selecting previously unselected package libnet-ssleay-perl. Unpacking libnet-ssleay-perl (from .../libnet-ssleay-perl_1.48-1+b1_amd64.deb) ... Selecting previously unselected package libio-socket-ssl-perl. Unpacking libio-socket-ssl-perl (from .../libio-socket-ssl-perl_1.76-2_all.deb) ... Selecting previously unselected package libnet-http-perl. Unpacking libnet-http-perl (from .../libnet-http-perl_6.03-2_all.deb) ... Selecting previously unselected package liblwp-protocol-https-perl. Unpacking liblwp-protocol-https-perl (from .../liblwp-protocol-https-perl_6.03-1_all.deb) ... Selecting previously unselected package libwww-robotrules-perl. Unpacking libwww-robotrules-perl (from .../libwww-robotrules-perl_6.01-1_all.deb) ... Selecting previously unselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_6.04-1_all.deb) ... Selecting previously unselected package libhttp-daemon-perl. Unpacking libhttp-daemon-perl (from .../libhttp-daemon-perl_6.01-1_all.deb) ... Selecting previously unselected package libterm-readkey-perl. Unpacking libterm-readkey-perl (from .../libterm-readkey-perl_2.30-4+b2_amd64.deb) ... Selecting previously unselected package sqlite3. Unpacking sqlite3 (from .../sqlite3_3.7.13-1+deb7u2_amd64.deb) ... Selecting previously unselected package libdbi-perl. Unpacking libdbi-perl (from .../libdbi-perl_1.622-1+deb7u1_amd64.deb) ... Selecting previously unselected package libdbd-sqlite3-perl. Unpacking libdbd-sqlite3-perl (from .../libdbd-sqlite3-perl_1.37-1_amd64.deb) ... Selecting previously unselected package libjs-prototype. Unpacking libjs-prototype (from .../libjs-prototype_1.7.0-2_all.deb) ... Selecting previously unselected package libjs-scriptaculous. Unpacking libjs-scriptaculous (from .../libjs-scriptaculous_1.9.0-2_all.deb) ... Selecting previously unselected package gbrowse. Unpacking gbrowse (from .../gbrowse_2.48~dfsg-1_all.deb) ... Selecting previously unselected package gbrowse-calign. Unpacking gbrowse-calign (from .../gbrowse-calign_2.48~dfsg-1_amd64.deb) ... Setting up libgdbm3:amd64 (1.8.3-11) ... Setting up libssl1.0.0:amd64 (1.0.1e-2+deb7u20) ... Setting up libsqlite3-0:amd64 (3.7.13-1+deb7u2) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u2) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u3) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1) ... Setting up libjpeg8:amd64 (8d-1+deb7u1) ... Setting up libpng12-0:amd64 (1.2.49-1+deb7u2) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u2) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u2) ... Setting up libxpm4:amd64 (1:3.5.10-1) ... Setting up libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Setting up netbase (5.0) ... Setting up libclass-isa-perl (0.36-3) ... Setting up openssl (1.0.1e-2+deb7u20) ... Setting up ca-certificates (20130119+deb7u1) ... Setting up sqlite3 (3.7.13-1+deb7u2) ... Setting up libjs-prototype (1.7.0-2) ... Setting up libjs-scriptaculous (1.9.0-2) ... Setting up libswitch-perl (2.16-2) ... Setting up perl-modules (5.14.2-21+deb7u3) ... Setting up perl (5.14.2-21+deb7u3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libio-string-perl (1.08-2) ... Setting up libdata-stag-perl (0.11-2) ... Setting up libbio-perl-perl (1.6.901-3) ... Setting up bioperl (1.6.901-3) ... Setting up libgd-gd2-perl (1:2.46-3+b1) ... Setting up libbio-graphics-perl (2.26-1) ... Setting up libcgi-session-perl (4.46-1) ... Setting up libjson-perl (2.53-1) ... Setting up libstatistics-descriptive-perl (3.0603-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libtimedate-perl (1.2000-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up liburi-perl (1.60-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-2) ... Setting up libhtml-tree-perl (5.02-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.03-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.48-1+b1) ... Setting up libio-socket-ssl-perl (1.76-2) ... Setting up libnet-http-perl (6.03-2) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libwww-perl (6.04-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libterm-readkey-perl (2.30-4+b2) ... Setting up libdbi-perl (1.622-1+deb7u1) ... Setting up libdbd-sqlite3-perl (1.37-1) ... Setting up gbrowse (2.48~dfsg-1) ... Setting up gbrowse-calign (2.48~dfsg-1) ... Setting up liblwp-protocol-https-perl (6.03-1) ... Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 171 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', '-y', 'install', 'gbrowse-calign'] 0m19.3s INFO: Running scripts post_install 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_install_exceptions'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_install_exceptions'] 0m19.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m20.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m20.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpCK0nkj to wheezy-lts 0m20.0s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main deb http://security.debian.org wheezy/updates main 0m20.0s INFO: Running scripts pre_distupgrade 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_distupgrade_wheezy'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_distupgrade_wheezy'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', 'update'] 0m22.2s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Get:1 http://security.debian.org wheezy/updates Release.gpg [1601 B] Get:2 http://security.debian.org wheezy/updates Release [52.3 kB] Get:3 http://security.debian.org wheezy/updates/main amd64 Packages [589 kB] Get:4 http://security.debian.org wheezy/updates/main Translation-en [338 kB] Fetched 981 kB in 1s (947 kB/s) Reading package lists... 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', 'update'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', '-yf', 'dist-upgrade'] 0m37.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bash ca-certificates fontconfig-config gnupg gpgv libc-bin libc6 libdb5.1 libexpat1 libfontconfig1 libfreetype6 libgd2-xpm libsqlite3-0 libssl1.0.0 libx11-6 libx11-data libxpm4 login multiarch-support openssl passwd perl perl-base perl-modules sensible-utils sqlite3 tar tzdata 28 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 28.5 MB of archives. After this operation, 897 kB of additional disk space will be used. Get:1 http://security.debian.org/ wheezy/updates/main bash amd64 4.2+dfsg-0.1+deb7u4 [1499 kB] Get:2 http://security.debian.org/ wheezy/updates/main login amd64 1:4.1.5.1-1+deb7u1 [984 kB] Get:3 http://security.debian.org/ wheezy/updates/main perl amd64 5.14.2-21+deb7u6 [4434 kB] Get:4 http://security.debian.org/ wheezy/updates/main perl-base amd64 5.14.2-21+deb7u6 [1534 kB] Get:5 http://security.debian.org/ wheezy/updates/main perl-modules all 5.14.2-21+deb7u6 [3441 kB] Get:6 http://security.debian.org/ wheezy/updates/main libc-bin amd64 2.13-38+deb7u12 [1275 kB] Get:7 http://security.debian.org/ wheezy/updates/main libc6 amd64 2.13-38+deb7u12 [4226 kB] Get:8 http://security.debian.org/ wheezy/updates/main libdb5.1 amd64 5.1.29-5+deb7u1 [723 kB] Get:9 http://security.debian.org/ wheezy/updates/main tar amd64 1.26+dfsg-0.1+deb7u1 [984 kB] Get:10 http://security.debian.org/ wheezy/updates/main libssl1.0.0 amd64 1.0.1t-1+deb7u4 [1279 kB] Get:11 http://security.debian.org/ wheezy/updates/main libexpat1 amd64 2.1.0-1+deb7u5 [139 kB] Get:12 http://security.debian.org/ wheezy/updates/main libfreetype6 amd64 2.4.9-1.1+deb7u7 [454 kB] Get:13 http://security.debian.org/ wheezy/updates/main libfontconfig1 amd64 2.9.0-7.1+deb7u1 [300 kB] Get:14 http://security.debian.org/ wheezy/updates/main fontconfig-config all 2.9.0-7.1+deb7u1 [233 kB] Get:15 http://security.debian.org/ wheezy/updates/main libx11-data all 2:1.5.0-1+deb7u4 [189 kB] Get:16 http://security.debian.org/ wheezy/updates/main libx11-6 amd64 2:1.5.0-1+deb7u4 [902 kB] Get:17 http://security.debian.org/ wheezy/updates/main libxpm4 amd64 1:3.5.10-1+deb7u1 [50.4 kB] Get:18 http://security.debian.org/ wheezy/updates/main libgd2-xpm amd64 2.0.36~rc1~dfsg-6.1+deb7u11 [236 kB] Get:19 http://security.debian.org/ wheezy/updates/main sqlite3 amd64 3.7.13-1+deb7u4 [119 kB] Get:20 http://security.debian.org/ wheezy/updates/main libsqlite3-0 amd64 3.7.13-1+deb7u4 [454 kB] Get:21 http://security.debian.org/ wheezy/updates/main gpgv amd64 1.4.12-7+deb7u9 [229 kB] Get:22 http://security.debian.org/ wheezy/updates/main gnupg amd64 1.4.12-7+deb7u9 [1954 kB] Get:23 http://security.debian.org/ wheezy/updates/main passwd amd64 1:4.1.5.1-1+deb7u1 [1262 kB] Get:24 http://security.debian.org/ wheezy/updates/main sensible-utils all 0.0.7+deb7u1 [9000 B] Get:25 http://security.debian.org/ wheezy/updates/main tzdata all 2018e-0+deb7u1 [496 kB] Get:26 http://security.debian.org/ wheezy/updates/main multiarch-support amd64 2.13-38+deb7u12 [152 kB] Get:27 http://security.debian.org/ wheezy/updates/main openssl amd64 1.0.1t-1+deb7u4 [701 kB] Get:28 http://security.debian.org/ wheezy/updates/main ca-certificates all 20130119+deb7u3 [198 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.5 MB in 3s (8332 kB/s) (Reading database ... 12948 files and directories currently installed.) Preparing to replace bash 4.2+dfsg-0.1+deb7u3 (using .../bash_4.2+dfsg-0.1+deb7u4_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.2+dfsg-0.1+deb7u4) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12948 files and directories currently installed.) Preparing to replace login 1:4.1.5.1-1 (using .../login_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.5.1-1+deb7u1) ... (Reading database ... 12948 files and directories currently installed.) Preparing to replace perl 5.14.2-21+deb7u3 (using .../perl_5.14.2-21+deb7u6_amd64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-21+deb7u3 (using .../perl-base_5.14.2-21+deb7u6_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-21+deb7u6) ... (Reading database ... 12948 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-21+deb7u3 (using .../perl-modules_5.14.2-21+deb7u6_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-38+deb7u12) ... (Reading database ... 12949 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.13-38+deb7u12) ... (Reading database ... 12949 files and directories currently installed.) Preparing to replace libdb5.1:amd64 5.1.29-5 (using .../libdb5.1_5.1.29-5+deb7u1_amd64.deb) ... Unpacking replacement libdb5.1:amd64 ... Setting up libdb5.1:amd64 (5.1.29-5+deb7u1) ... (Reading database ... 12949 files and directories currently installed.) Preparing to replace tar 1.26+dfsg-0.1 (using .../tar_1.26+dfsg-0.1+deb7u1_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.26+dfsg-0.1+deb7u1) ... (Reading database ... 12949 files and directories currently installed.) Preparing to replace libssl1.0.0:amd64 1.0.1e-2+deb7u20 (using .../libssl1.0.0_1.0.1t-1+deb7u4_amd64.deb) ... Unpacking replacement libssl1.0.0:amd64 ... Preparing to replace libexpat1:amd64 2.1.0-1+deb7u2 (using .../libexpat1_2.1.0-1+deb7u5_amd64.deb) ... Unpacking replacement libexpat1:amd64 ... Preparing to replace libfreetype6:amd64 2.4.9-1.1+deb7u3 (using .../libfreetype6_2.4.9-1.1+deb7u7_amd64.deb) ... Unpacking replacement libfreetype6:amd64 ... Preparing to replace libfontconfig1:amd64 2.9.0-7.1 (using .../libfontconfig1_2.9.0-7.1+deb7u1_amd64.deb) ... Unpacking replacement libfontconfig1:amd64 ... Preparing to replace fontconfig-config 2.9.0-7.1 (using .../fontconfig-config_2.9.0-7.1+deb7u1_all.deb) ... Unpacking replacement fontconfig-config ... Preparing to replace libx11-data 2:1.5.0-1+deb7u2 (using .../libx11-data_2%3a1.5.0-1+deb7u4_all.deb) ... Unpacking replacement libx11-data ... Preparing to replace libx11-6:amd64 2:1.5.0-1+deb7u2 (using .../libx11-6_2%3a1.5.0-1+deb7u4_amd64.deb) ... Unpacking replacement libx11-6:amd64 ... Preparing to replace libxpm4:amd64 1:3.5.10-1 (using .../libxpm4_1%3a3.5.10-1+deb7u1_amd64.deb) ... Unpacking replacement libxpm4:amd64 ... Preparing to replace libgd2-xpm:amd64 2.0.36~rc1~dfsg-6.1+deb7u2 (using .../libgd2-xpm_2.0.36~rc1~dfsg-6.1+deb7u11_amd64.deb) ... Unpacking replacement libgd2-xpm:amd64 ... Preparing to replace sqlite3 3.7.13-1+deb7u2 (using .../sqlite3_3.7.13-1+deb7u4_amd64.deb) ... Unpacking replacement sqlite3 ... Preparing to replace libsqlite3-0:amd64 3.7.13-1+deb7u2 (using .../libsqlite3-0_3.7.13-1+deb7u4_amd64.deb) ... Unpacking replacement libsqlite3-0:amd64 ... Preparing to replace gpgv 1.4.12-7+deb7u7 (using .../gpgv_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.12-7+deb7u9) ... (Reading database ... 12949 files and directories currently installed.) Preparing to replace gnupg 1.4.12-7+deb7u7 (using .../gnupg_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.12-7+deb7u9) ... (Reading database ... 12949 files and directories currently installed.) Preparing to replace passwd 1:4.1.5.1-1 (using .../passwd_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.5.1-1+deb7u1) ... (Reading database ... 12949 files and directories currently installed.) Preparing to replace sensible-utils 0.0.7 (using .../sensible-utils_0.0.7+deb7u1_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.7+deb7u1) ... (Reading database ... 12949 files and directories currently installed.) Preparing to replace tzdata 2016d-0+deb7u1 (using .../tzdata_2018e-0+deb7u1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2018e-0+deb7u1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Sep 28 11:39:26 UTC 2018. Universal Time is now: Fri Sep 28 11:39:26 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 12961 files and directories currently installed.) Preparing to replace multiarch-support 2.13-38+deb7u10 (using .../multiarch-support_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-38+deb7u12) ... (Reading database ... 12961 files and directories currently installed.) Preparing to replace openssl 1.0.1e-2+deb7u20 (using .../openssl_1.0.1t-1+deb7u4_amd64.deb) ... Unpacking replacement openssl ... Preparing to replace ca-certificates 20130119+deb7u1 (using .../ca-certificates_20130119+deb7u3_all.deb) ... Unpacking replacement ca-certificates ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb7u4) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u5) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u7) ... Setting up fontconfig-config (2.9.0-7.1+deb7u1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u4) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u4) ... Setting up libxpm4:amd64 (1:3.5.10-1+deb7u1) ... Setting up libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u11) ... Setting up libsqlite3-0:amd64 (3.7.13-1+deb7u4) ... Setting up sqlite3 (3.7.13-1+deb7u4) ... Setting up openssl (1.0.1t-1+deb7u4) ... Setting up ca-certificates (20130119+deb7u3) ... Setting up perl-modules (5.14.2-21+deb7u6) ... Setting up perl (5.14.2-21+deb7u6) ... Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 54 added, 70 removed; done. Running hooks in /etc/ca-certificates/update.d....done. 0m37.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', '-yf', 'dist-upgrade'] 0m37.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m38.1s DUMP: fb1ccc436f778eea085ae099e3151787 - 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 0m38.1s DUMP: Package: gbrowse-calign Source: gbrowse Version: 2.48~dfsg-1 Installed-Size: 122 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.14.2-7), perlapi-5.14.2, libc6 (>= 2.3), gbrowse Description-en: CAlign helper This package provides the CAlign helper for use with Realign. It speeds up Smith-Waterman alignment. Homepage: http://www.gbrowse.org/ Description-md5: 7aa5fca05830bdeaf9c3c3aa626a2408 Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.48~dfsg-1_amd64.deb Size: 35584 MD5sum: 42ccf980d63bef8c4ca359154496963d SHA1: cf95c84b3fda04873c4e62b9318ac9712c3e7fad SHA256: 8fc8afcf6a12b6b7c06d1d8ab824e9182ceaf69fa63b03b6bb20244a6937b8fd 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 0m38.1s INFO: apt-cache knows about the following packages: gbrowse-calign 0m38.1s INFO: Running scripts pre_install 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_database-server'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_database-server'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_exceptions'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_exceptions'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_extras'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_extras'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'policy'] 0m38.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'policy'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'policy', 'gbrowse-calign'] 0m38.2s DUMP: gbrowse-calign: Installed: 2.48~dfsg-1 Candidate: 2.48~dfsg-1 Version table: *** 2.48~dfsg-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'policy', 'gbrowse-calign'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', '-y', 'install', 'gbrowse-calign'] 0m38.5s DUMP: Reading package lists... Building dependency tree... Reading state information... gbrowse-calign is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m38.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', '-y', 'install', 'gbrowse-calign'] 0m38.5s INFO: Running scripts post_install 0m38.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_install_exceptions'] 0m38.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_install_exceptions'] 0m38.5s INFO: Running scripts post_distupgrade 0m38.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m38.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m38.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_distupgrade_exceptions'] 0m38.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_distupgrade_exceptions'] 0m38.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m38.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m39.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m39.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m39.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m39.9s INFO: Running scripts pre_install 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_database-server'] 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_database-server'] 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_exceptions'] 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_exceptions'] 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_extras'] 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_extras'] 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_foreign_architecture'] 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_foreign_architecture'] 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'policy'] 0m40.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'policy'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'policy', 'gbrowse-calign'] 0m40.1s DUMP: gbrowse-calign: Installed: 2.48~dfsg-1 Candidate: 2.48~dfsg-1 Version table: *** 2.48~dfsg-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-cache', 'policy', 'gbrowse-calign'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', '-y', 'install', 'gbrowse-calign=2.48~dfsg-1'] 0m40.3s DUMP: Reading package lists... Building dependency tree... Reading state information... gbrowse-calign is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', '-y', 'install', 'gbrowse-calign=2.48~dfsg-1'] 0m40.3s INFO: Running scripts post_install 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_install_exceptions'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_install_exceptions'] 0m40.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m41.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m41.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m41.0s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u4 install ok installed bioperl bioperl 1.6.901-3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed ca-certificates ca-certificates 20130119+deb7u3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed fontconfig-config fontconfig-config 2.9.0-7.1+deb7u1 install ok installed gbrowse gbrowse 2.48~dfsg-1 install ok installed gbrowse-calign gbrowse-calign 2.48~dfsg-1 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u9 install ok installed gpgv gpgv 1.4.12-7+deb7u9 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libbio-graphics-perl libbio-graphics-perl 2.26-1 install ok installed libbio-perl-perl libbio-perl-perl 1.6.901-3 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u12 install ok installed libc6:amd64 libc6 2.13-38+deb7u12 install ok installed libcgi-session-perl libcgi-session-perl 4.46-1 install ok installed libclass-isa-perl libclass-isa-perl 0.36-3 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdata-stag-perl libdata-stag-perl 0.11-2 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5+deb7u1 install ok installed libdbd-sqlite3-perl libdbd-sqlite3-perl 1.37-1 install ok installed libdbi-perl libdbi-perl 1.622-1+deb7u1 install ok installed libencode-locale-perl libencode-locale-perl 1.03-1 install ok installed libexpat1:amd64 libexpat1 2.1.0-1+deb7u5 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.9.0-7.1+deb7u1 install ok installed libfreetype6:amd64 libfreetype6 2.4.9-1.1+deb7u7 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libgd-gd2-perl libgd-gd2-perl 1:2.46-3+b1 install ok installed libgd2-xpm:amd64 libgd2-xpm 2.0.36~rc1~dfsg-6.1+deb7u11 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-11 install ok installed libhtml-parser-perl libhtml-parser-perl 3.69-2 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-2 install ok installed libhtml-tree-perl libhtml-tree-perl 5.02-1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.00-2 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.03-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 1.76-2 install ok installed libio-string-perl libio-string-perl 1.08-2 install ok installed libjpeg8:amd64 libjpeg8 8d-1+deb7u1 install ok installed libjs-prototype libjs-prototype 1.7.0-2 install ok installed libjs-scriptaculous libjs-scriptaculous 1.9.0-2 install ok installed libjson-perl libjson-perl 2.53-1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.03-1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libnet-http-perl libnet-http-perl 6.03-2 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.48-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libpng12-0:amd64 libpng12-0 1.2.49-1+deb7u2 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.7.13-1+deb7u4 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb7u4 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0603-1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libswitch-perl libswitch-perl 2.16-2 install ok installed libterm-readkey-perl libterm-readkey-perl 2.30-4+b2 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtimedate-perl libtimedate-perl 1.2000-1 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed liburi-perl liburi-perl 1.60-1 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed libwww-perl libwww-perl 6.04-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.5.0-1+deb7u4 install ok installed libx11-data libx11-data 2:1.5.0-1+deb7u4 install ok installed libxau6:amd64 libxau6 1:1.0.7-1 install ok installed libxcb1:amd64 libxcb1 1.8.1-2+deb7u1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.10-1+deb7u1 install ok installed login login 1:4.1.5.1-1+deb7u1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u12 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed netbase netbase 5.0 install ok installed openssl openssl 1.0.1t-1+deb7u4 install ok installed passwd passwd 1:4.1.5.1-1+deb7u1 install ok installed perl perl 5.14.2-21+deb7u6 install ok installed perl-base perl-base 5.14.2-21+deb7u6 install ok installed perl-modules perl-modules 5.14.2-21+deb7u6 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7+deb7u1 install ok installed sqlite3 sqlite3 3.7.13-1+deb7u4 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1+deb7u1 install ok installed ttf-dejavu-core ttf-dejavu-core 2.33-3 install ok installed tzdata tzdata 2018e-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m41.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m41.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', '-ac', '--ignore-obsolete'] 0m42.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', '-ac', '--ignore-obsolete'] 0m42.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m42.6s DUMP: 0.15.1 0m42.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m42.6s INFO: Running adequate version 0.15.1 now. 0m42.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'gbrowse-calign'] 0m42.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'gbrowse-calign'] 0m42.6s INFO: Running scripts pre_remove 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m42.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m42.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_remove_exceptions'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/pre_remove_exceptions'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', 'remove', 'libx11-data', 'libgd-gd2-perl', 'libfreetype6:amd64', 'libcgi-session-perl', 'libencode-locale-perl', 'libnet-ssleay-perl', 'libio-socket-ssl-perl', 'libdbd-sqlite3-perl', 'libx11-6:amd64', 'libbio-perl-perl', 'libdbi-perl', 'libfontconfig1:amd64', 'libjpeg8:amd64', 'liblwp-protocol-https-perl', 'fontconfig-config', 'bioperl', 'libwww-perl', 'libclass-isa-perl', 'libjs-scriptaculous', 'perl-modules', 'libhttp-negotiate-perl', 'libswitch-perl', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'perl', 'libbio-graphics-perl', 'libhttp-daemon-perl', 'netbase', 'libjson-perl', 'libtimedate-perl', 'libterm-readkey-perl', 'libxcb1:amd64', 'libsqlite3-0:amd64', 'libjs-prototype', 'libstatistics-descriptive-perl', 'libhtml-parser-perl', 'libhttp-message-perl', 'libxdmcp6:amd64', 'libexpat1:amd64', 'libxau6:amd64', 'libhttp-cookies-perl', 'sqlite3', 'ca-certificates', 'liburi-perl', 'libpng12-0:amd64', 'libdata-stag-perl', 'libxpm4:amd64', 'libfile-listing-perl', 'gbrowse', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libnet-http-perl', 'libgd2-xpm:amd64', 'libhtml-tree-perl', 'openssl', 'libwww-robotrules-perl', 'libhttp-date-perl', 'libio-string-perl', 'libhtml-tagset-perl', 'gbrowse-calign'] 0m44.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bioperl ca-certificates fontconfig-config gbrowse gbrowse-calign libbio-graphics-perl libbio-perl-perl libcgi-session-perl libclass-isa-perl libdata-stag-perl libdbd-sqlite3-perl libdbi-perl libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgd-gd2-perl libgd2-xpm libgdbm3 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-socket-ssl-perl libio-string-perl libjpeg8 libjs-prototype libjs-scriptaculous libjson-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libpng12-0 libsqlite3-0 libssl1.0.0 libstatistics-descriptive-perl libswitch-perl libterm-readkey-perl libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 netbase openssl perl perl-modules sqlite3 ttf-dejavu-core 0 upgraded, 0 newly installed, 60 to remove and 0 not upgraded. After this operation, 82.9 MB disk space will be freed. (Reading database ... 12950 files and directories currently installed.) Removing gbrowse-calign ... Removing gbrowse ... Removing libbio-graphics-perl ... Removing bioperl ... Removing libgd-gd2-perl ... Removing libgd2-xpm:amd64 ... Removing libfontconfig1:amd64 ... Removing fontconfig-config ... Removing libbio-perl-perl ... Removing libcgi-session-perl ... Removing libhttp-daemon-perl ... Removing libterm-readkey-perl ... Removing libstatistics-descriptive-perl ... Removing libjson-perl ... Removing libdata-stag-perl ... Removing libio-string-perl ... Removing libdbd-sqlite3-perl ... Removing libdbi-perl ... Removing libexpat1:amd64 ... Removing libfreetype6:amd64 ... Removing libjpeg8:amd64 ... Removing libjs-scriptaculous ... Removing libjs-prototype ... Removing libpng12-0:amd64 ... Removing sqlite3 ... Removing libsqlite3-0:amd64 ... Removing libxpm4:amd64 ... Removing libx11-6:amd64 ... Removing libx11-data ... Removing libxcb1:amd64 ... Removing libxau6:amd64 ... Removing libxdmcp6:amd64 ... Removing ttf-dejavu-core ... Removing libwww-perl ... Removing liblwp-protocol-https-perl ... Removing ca-certificates ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libwww-robotrules-perl ... Removing libhttp-negotiate-perl ... Removing libhttp-cookies-perl ... Removing libhttp-message-perl ... Removing libhtml-tree-perl ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing libfile-listing-perl ... Removing libhttp-date-perl ... Removing libtimedate-perl ... Removing libio-socket-ssl-perl ... Removing libnet-ssleay-perl ... Removing libnet-http-perl ... Removing liblwp-mediatypes-perl ... Removing libhtml-tagset-perl ... Removing libencode-locale-perl ... Removing perl ... Removing perl-modules ... Removing libswitch-perl ... Removing libclass-isa-perl ... Removing libgdbm3:amd64 ... Removing openssl ... Removing libssl1.0.0:amd64 ... Removing netbase ... 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', 'remove', 'libx11-data', 'libgd-gd2-perl', 'libfreetype6:amd64', 'libcgi-session-perl', 'libencode-locale-perl', 'libnet-ssleay-perl', 'libio-socket-ssl-perl', 'libdbd-sqlite3-perl', 'libx11-6:amd64', 'libbio-perl-perl', 'libdbi-perl', 'libfontconfig1:amd64', 'libjpeg8:amd64', 'liblwp-protocol-https-perl', 'fontconfig-config', 'bioperl', 'libwww-perl', 'libclass-isa-perl', 'libjs-scriptaculous', 'perl-modules', 'libhttp-negotiate-perl', 'libswitch-perl', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'perl', 'libbio-graphics-perl', 'libhttp-daemon-perl', 'netbase', 'libjson-perl', 'libtimedate-perl', 'libterm-readkey-perl', 'libxcb1:amd64', 'libsqlite3-0:amd64', 'libjs-prototype', 'libstatistics-descriptive-perl', 'libhtml-parser-perl', 'libhttp-message-perl', 'libxdmcp6:amd64', 'libexpat1:amd64', 'libxau6:amd64', 'libhttp-cookies-perl', 'sqlite3', 'ca-certificates', 'liburi-perl', 'libpng12-0:amd64', 'libdata-stag-perl', 'libxpm4:amd64', 'libfile-listing-perl', 'gbrowse', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libnet-http-perl', 'libgd2-xpm:amd64', 'libhtml-tree-perl', 'openssl', 'libwww-robotrules-perl', 'libhttp-date-perl', 'libio-string-perl', 'libhtml-tagset-perl', 'gbrowse-calign'] 0m44.8s INFO: Running scripts post_remove 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_remove_exceptions'] 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_remove_exceptions'] 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg', '--purge', 'libx11-data', 'libgd-gd2-perl', 'libfreetype6:amd64', 'libcgi-session-perl', 'libencode-locale-perl', 'libnet-ssleay-perl', 'libio-socket-ssl-perl', 'libdbd-sqlite3-perl', 'libx11-6:amd64', 'libbio-perl-perl', 'libdbi-perl', 'libfontconfig1:amd64', 'libjpeg8:amd64', 'liblwp-protocol-https-perl', 'fontconfig-config', 'bioperl', 'libwww-perl', 'libclass-isa-perl', 'libjs-scriptaculous', 'perl-modules', 'libhttp-negotiate-perl', 'libswitch-perl', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'perl', 'libbio-graphics-perl', 'libhttp-daemon-perl', 'netbase', 'libjson-perl', 'libtimedate-perl', 'libterm-readkey-perl', 'libxcb1:amd64', 'libsqlite3-0:amd64', 'libjs-prototype', 'libstatistics-descriptive-perl', 'libhtml-parser-perl', 'libhttp-message-perl', 'libxdmcp6:amd64', 'libexpat1:amd64', 'libxau6:amd64', 'libhttp-cookies-perl', 'sqlite3', 'ca-certificates', 'liburi-perl', 'libpng12-0:amd64', 'libdata-stag-perl', 'libxpm4:amd64', 'libfile-listing-perl', 'gbrowse', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libnet-http-perl', 'libgd2-xpm:amd64', 'libhtml-tree-perl', 'openssl', 'libwww-robotrules-perl', 'libhttp-date-perl', 'libio-string-perl', 'libhtml-tagset-perl'] 0m45.5s DUMP: dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libgd-gd2-perl which isn't installed (Reading database ... 6904 files and directories currently installed.) Removing libfreetype6:amd64 ... Purging configuration files for libfreetype6:amd64 ... dpkg: warning: ignoring request to remove libcgi-session-perl which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed Removing libx11-6:amd64 ... Purging configuration files for libx11-6:amd64 ... dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed Removing libfontconfig1:amd64 ... Purging configuration files for libfontconfig1:amd64 ... dpkg: warning: ignoring request to remove libjpeg8 which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed Removing fontconfig-config ... Purging configuration files for fontconfig-config ... dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libclass-isa-perl which isn't installed dpkg: warning: ignoring request to remove libjs-scriptaculous which isn't installed Removing perl-modules ... Purging configuration files for perl-modules ... dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libswitch-perl which isn't installed Removing libssl1.0.0:amd64 ... Purging configuration files for libssl1.0.0:amd64 ... Removing libgdbm3:amd64 ... Purging configuration files for libgdbm3:amd64 ... dpkg: warning: ignoring request to remove perl which isn't installed dpkg: warning: ignoring request to remove libbio-graphics-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed Removing netbase ... Purging configuration files for netbase ... dpkg: warning: ignoring request to remove libjson-perl which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed Removing libxcb1:amd64 ... Purging configuration files for libxcb1:amd64 ... Removing libsqlite3-0:amd64 ... Purging configuration files for libsqlite3-0:amd64 ... dpkg: warning: ignoring request to remove libjs-prototype which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed Removing libxdmcp6:amd64 ... Purging configuration files for libxdmcp6:amd64 ... Removing libexpat1:amd64 ... Purging configuration files for libexpat1:amd64 ... Removing libxau6:amd64 ... Purging configuration files for libxau6:amd64 ... dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove sqlite3 which isn't installed Removing ca-certificates ... Purging configuration files for ca-certificates ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove liburi-perl which isn't installed Removing libpng12-0:amd64 ... Purging configuration files for libpng12-0:amd64 ... dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed Removing libxpm4:amd64 ... Purging configuration files for libxpm4:amd64 ... dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed Removing gbrowse ... Purging configuration files for gbrowse ... dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove ttf-dejavu-core which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed Removing libgd2-xpm:amd64 ... Purging configuration files for libgd2-xpm:amd64 ... dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed Removing openssl ... Purging configuration files for openssl ... dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg', '--purge', 'libx11-data', 'libgd-gd2-perl', 'libfreetype6:amd64', 'libcgi-session-perl', 'libencode-locale-perl', 'libnet-ssleay-perl', 'libio-socket-ssl-perl', 'libdbd-sqlite3-perl', 'libx11-6:amd64', 'libbio-perl-perl', 'libdbi-perl', 'libfontconfig1:amd64', 'libjpeg8:amd64', 'liblwp-protocol-https-perl', 'fontconfig-config', 'bioperl', 'libwww-perl', 'libclass-isa-perl', 'libjs-scriptaculous', 'perl-modules', 'libhttp-negotiate-perl', 'libswitch-perl', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'perl', 'libbio-graphics-perl', 'libhttp-daemon-perl', 'netbase', 'libjson-perl', 'libtimedate-perl', 'libterm-readkey-perl', 'libxcb1:amd64', 'libsqlite3-0:amd64', 'libjs-prototype', 'libstatistics-descriptive-perl', 'libhtml-parser-perl', 'libhttp-message-perl', 'libxdmcp6:amd64', 'libexpat1:amd64', 'libxau6:amd64', 'libhttp-cookies-perl', 'sqlite3', 'ca-certificates', 'liburi-perl', 'libpng12-0:amd64', 'libdata-stag-perl', 'libxpm4:amd64', 'libfile-listing-perl', 'gbrowse', 'liblwp-mediatypes-perl', 'ttf-dejavu-core', 'libnet-http-perl', 'libgd2-xpm:amd64', 'libhtml-tree-perl', 'openssl', 'libwww-robotrules-perl', 'libhttp-date-perl', 'libio-string-perl', 'libhtml-tagset-perl'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg', '--purge', 'gbrowse-calign'] 0m45.5s DUMP: dpkg: warning: ignoring request to remove gbrowse-calign which isn't installed 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg', '--purge', 'gbrowse-calign'] 0m45.5s INFO: Running scripts post_purge 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_purge_exceptions'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_purge_exceptions'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg', '--purge', '--pending'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg', '--purge', '--pending'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg', '--remove', '--pending'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg', '--remove', '--pending'] 0m45.5s INFO: Running scripts post_test 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_test_exceptions'] 0m45.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'tmp/scripts/post_test_exceptions'] 0m45.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m46.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg-divert', '--list'] 0m46.2s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'dpkg-divert', '--list'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', 'clean'] 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpCK0nkj', 'apt-get', 'clean'] 0m46.2s DEBUG: Recording chroot state 0m47.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/run/shm'] 0m47.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/run/shm'] 0m47.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/console'] 0m47.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/console'] 0m47.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/ptmx'] 0m47.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/ptmx'] 0m47.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/pts'] 0m47.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/dev/pts'] 0m47.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/proc'] 0m47.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpCK0nkj/proc'] 0m47.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m47.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpCK0nkj'] 0m47.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpCK0nkj 0m47.6s INFO: PASS: Upgrading between Debian distributions. 0m47.6s INFO: PASS: All tests. 0m47.6s INFO: piuparts run ends. ret=0 End: 2018-09-28 11:39:43 UTC